RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate
deformylase [Candidatus Liberibacter asiaticus str. psy62]
(288 letters)
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 271 bits (693), Expect = 2e-73
Identities = 116/282 (41%), Positives = 175/282 (62%), Gaps = 5/282 (1%)
Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIA 62
++LT++CPS + + L C + +++ F+D +++ F+R F
Sbjct: 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRV 69
Query: 63 D-----FQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117
D F+PI ++F +Q++I + K LI+VS+ +HCL DLL+RW +G L ++IVG+V
Sbjct: 70 DALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIV 129
Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177
SNH L + LPF + P+T K + E + +++ E + EL+ILARYMQ+LS
Sbjct: 130 SNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQVLSPEAS 189
Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237
++ R INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPIIEQ V RV
Sbjct: 190 ARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVD 249
Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279
H+ E +A+G+++E L +AV A I++RVF+N +T+VF
Sbjct: 250 HSYRPEQLLAVGRDVECITLARAVKAFIERRVFLNGDRTVVF 291
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae
PV}
Length = 302
Score = 235 bits (600), Expect = 1e-62
Identities = 108/282 (38%), Positives = 175/282 (62%), Gaps = 3/282 (1%)
Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---M 57
M ++ L I CP I + + ++L++ I + S +D + FMR +T +
Sbjct: 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDL 79
Query: 58 KLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117
F F PI ++FS+ + I ++ + + +++ S+ HCL DLL+RW+ L +I V+
Sbjct: 80 DGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVI 139
Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177
SNH + +VE + +P+Y++P+ ++K + ++ ++ + ++++LARYMQIL LC
Sbjct: 140 SNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPPQLC 199
Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237
+ ++INIHHSFLPSF GA PY QA GVK+IGAT HY ELDAGPIIEQDVVRV+
Sbjct: 200 REYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVS 259
Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279
H +IE+ + G+++E VL + + AH++ RV ++ KT+VF
Sbjct: 260 HRDSIENMVRFGRDVEKMVLARGLRAHLEDRVLVHDNKTVVF 301
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas
palustris}
Length = 288
Score = 229 bits (584), Expect = 7e-61
Identities = 118/281 (41%), Positives = 176/281 (62%), Gaps = 4/281 (1%)
Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---MKL 59
Y+LT++CP I S + +L G NILD Q+ND ++ FMR+ F +
Sbjct: 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLAS 65
Query: 60 FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSN 119
F I +F++ + +R+ + K ++LVSQ DHCL D+LYRW +G L + +VSN
Sbjct: 66 LRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSN 125
Query: 120 HTTHKKLVENYQ-LPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178
H ++ +PFY+ P+ + + + E + +I + + +L++LARYMQILSD +
Sbjct: 126 HPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSA 185
Query: 179 KMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238
++ GR INIHHSFLP FKGA PY QA++ GVK+IGATAHY LD GPII+QDV R++H
Sbjct: 186 RLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISH 245
Query: 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279
T D + G++IE +VL++A++ H+ RV +N RKT+VF
Sbjct: 246 RDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVF 286
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 224 bits (573), Expect = 2e-59
Identities = 117/278 (42%), Positives = 168/278 (60%), Gaps = 2/278 (0%)
Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL--F 60
++ILT CPS ++ YL Q C + + F+D + + F+R+ F F
Sbjct: 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGF 67
Query: 61 IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120
A + F + + + K +I+VS+ DHCLNDLLYR IG L +++V VVSNH
Sbjct: 68 RAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNH 127
Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180
+ L +++P+Y+ + ++K E+K++ +IE+ EL+ILARYMQ+LS LC ++
Sbjct: 128 PDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQVLSPELCRRL 187
Query: 181 TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240
G INIHHS LP FKGA PY QAY GVK++GATAHY +LD GPII Q V V H+
Sbjct: 188 DGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPIIAQGVEVVDHSH 247
Query: 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIV 278
ED IA G++IE L +AV HI++RVF+N +T+V
Sbjct: 248 YPEDLIAKGRDIECLTLARAVGYHIERRVFLNANRTVV 285
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 224 bits (572), Expect = 2e-59
Identities = 120/278 (43%), Positives = 178/278 (64%), Gaps = 2/278 (0%)
Query: 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC-MKLFIA 62
Y+L++ C I S + +L G NI++ QFND D+SK FMR+S + F +
Sbjct: 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNS 67
Query: 63 DFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTT 122
F +V++++ ++ R + K +I+VS+ DHCL DLLYR +G L + +VG++SNH
Sbjct: 68 AFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPR 127
Query: 123 HKKLV-ENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMT 181
V +PF+YLP+T K E ++ NI+ ++ +L++LARYMQILSD L ++
Sbjct: 128 EALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLS 187
Query: 182 GRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQT 241
GR INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPII QDV V+H +
Sbjct: 188 GRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDS 247
Query: 242 IEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279
ED + G++IE +VL++AV ++ R+ +N +T+VF
Sbjct: 248 AEDLVRKGRDIERRVLSRAVLLFLEDRLIVNGERTVVF 285
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 145 bits (368), Expect = 8e-36
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL---VENYQLPFYYLPMTE 141
++L+S L ++ + + V SN L + +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 142 QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY 201
++ +++LI+ I+ ++++LA +M+ILS GR++NIH S LP + G + +
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121
Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261
+QA E G + G + H+ ELD GP+I Q V V + +D A + E + +
Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181
Query: 262 NAHIQQRVFINKRKTIVFP 280
+ R+ +++ +
Sbjct: 182 SWFADGRLKMHENAAWLDG 200
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural genomics center for infectious
disease; 2.20A {Anaplasma phagocytophilum HZ}
Length = 215
Score = 141 bits (356), Expect = 2e-34
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNK 144
+ +L+S L L ++ ++ I V+SN+ + L+ + + K
Sbjct: 10 RVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVV--KRK 67
Query: 145 IESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQA 204
+ + ++ +++V+L+ LA +M IL + +IINIH S LPSFKG N +QA
Sbjct: 68 PLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQA 127
Query: 205 YEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAH 264
Y+ GVKI G T HY ELDAGPII Q V V T E + E K V
Sbjct: 128 YKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLI 187
Query: 265 IQQRVFINKRKTIVF 279
Q ++ + T+
Sbjct: 188 AQDKIKLCDDGTVQC 202
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 133 bits (335), Expect = 6e-32
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK--KLVENYQLPFYYLPMTE- 141
+ +L+S L L+ + I V+SN E +P +
Sbjct: 2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61
Query: 142 QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY 201
+N++E + + ++E+ +++++ LA +M+ILS K G+++NIH S LPSFKG+N +
Sbjct: 62 KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAH 121
Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261
+QA E GV + G T H+ ++DAG II Q+ V V T+ K E K+ A+
Sbjct: 122 EQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAAL 181
Query: 262 NAHIQQRVFINKRKTIVF 279
V + + I +
Sbjct: 182 QLVASGTVQLGENGKICW 199
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 116 bits (290), Expect = 8e-27
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 3/205 (1%)
Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYL---PMTE 141
K +LVS L ++ G + +I V+S++ + +
Sbjct: 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEF 62
Query: 142 QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY 201
+K E E+++ ++K VEL++LA +M+ILS + ++INIH S +P+F+G +
Sbjct: 63 PSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQ 122
Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261
KQA E+GVK G T H +DAGP+I Q VV V E K+L + V
Sbjct: 123 KQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTV 182
Query: 262 NAHIQQRVFINKRKTIVFPAYPNNY 286
Q R+ I+ RK IV A
Sbjct: 183 QWFAQDRIIIDGRKVIVKDATYGTL 207
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A*
Length = 314
Score = 111 bits (279), Expect = 2e-25
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 18/170 (10%)
Query: 112 NIVGVVSN------------HTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNN 159
N+VGV + + K L E LP + Q Q+ ++ +
Sbjct: 28 NVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF------QPVSLRPQENQQLVAELQ 81
Query: 160 VELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYA 219
++M++ Y IL + IN+H S LP ++GA P +++ G G T
Sbjct: 82 ADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQM 141
Query: 220 ICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRV 269
LD G ++ + +T T + + L +
Sbjct: 142 DVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTA 191
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 87.6 bits (216), Expect = 3e-18
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 3/198 (1%)
Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLP--FYYLPMTEQ 142
+ ++L S L LL +G +V V + + F
Sbjct: 14 RLVVLASGTGSLLRSLL-DAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHP 72
Query: 143 NKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYK 202
++ + + + +L++ A +M+IL + GR +N H + LP+F G +
Sbjct: 73 SRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVA 132
Query: 203 QAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVN 262
A YGVK+ GAT H D GPI+ Q V V E K E ++L AV
Sbjct: 133 DALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVA 192
Query: 263 AHIQQRVFINKRKTIVFP 280
A V + R +
Sbjct: 193 ALATHGVTVVGRTATMGR 210
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 84.3 bits (208), Expect = 3e-17
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 15/161 (9%)
Query: 112 NIVGVVSN---------HTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVEL 162
I + ++ + + +L +P Y + + I + + ++
Sbjct: 25 EISAIFTHTDNPGEKAFYGSVARLAAERGIPVY------APDNVNHPLWVERIAQLSPDV 78
Query: 163 MILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICE 222
+ Y ++ D + N+H S LP ++G P G G T H +
Sbjct: 79 IFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKR 138
Query: 223 LDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNA 263
DAG I+ Q + + + ++L + + A
Sbjct: 139 ADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPA 179
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP:
d.58.18.7
Length = 91
Score = 53.2 bits (128), Expect = 7e-08
Identities = 14/76 (18%), Positives = 31/76 (40%)
Query: 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIAD 63
I+T+ I + + ++ G NI DISQ + + +S +
Sbjct: 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNE 65
Query: 64 FQPIVQQFSLQYSIRN 79
F+ Q +++ +I++
Sbjct: 66 FEAFGQTLNVKINIQS 81
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 47.7 bits (112), Expect = 3e-06
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 7/140 (5%)
Query: 112 NIVGVVS------NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMIL 165
+VGV + E +P + + K ++ ++ + EL +L
Sbjct: 47 EVVGVFTVPDKDGKADPLGLEAEKDGVPVFK-YSRWRAKGQALPDVVAKYQALGAELNVL 105
Query: 166 ARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDA 225
Q + + I H S LP +GA+ +G K G + +A LD
Sbjct: 106 PFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDT 165
Query: 226 GPIIEQDVVRVTHAQTIEDY 245
G ++ Q V T+
Sbjct: 166 GDLLLQKECEVLPDDTVSTL 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.9 bits (106), Expect = 2e-05
Identities = 55/364 (15%), Positives = 96/364 (26%), Gaps = 177/364 (48%)
Query: 2 SSYILT--ITCPSNEEITSII-----PDYLSTQGCNILDIS--QFNDL------------ 40
Y+L+ I+CP +I Y+ T +L + +
Sbjct: 228 KDYLLSIPISCP-------LIGVIQLAHYVVT--AKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 41 --------DTSKLFMRISFVFNTCMKL--FIA----------DFQPIVQQFSLQY----- 75
D+ + F + + FI P + + SL+
Sbjct: 279 TAVAIAETDSWESFFVSV---RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 76 ----SIRN-TKEATKTLILVSQPDHCLNDL-----LYRWNIGTLAL-----NIVGVVSNH 120
SI N T+E + + + + L + ++L N+V VS
Sbjct: 336 SPMLSISNLTQEQVQDYV-----NKTNSHLPAGKQVE------ISLVNGAKNLV--VSGP 382
Query: 121 TTHKKLVE-NYQL-----PFYYLPMTEQNKIE-SEQKLINIIEKNNVELMILARYMQILS 173
+ L N L P +Q++I SE+KL
Sbjct: 383 P--QSLYGLNLTLRKAKAP----SGLDQSRIPFSERKL---------------------- 414
Query: 174 DHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAH--YAICEL-DAGPIIE 230
+ FLP + + H L A +I
Sbjct: 415 ------------KFSNRFLP------------------VASPFHSHL----LVPASDLIN 440
Query: 231 QDVVR-------------VTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTI 277
+D+V+ V D + +I + V+ I+ V T
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI----SERIVDCIIRLPV--KWETTT 494
Query: 278 VFPA 281
F A
Sbjct: 495 QFKA 498
Score = 38.8 bits (90), Expect = 0.001
Identities = 54/367 (14%), Positives = 94/367 (25%), Gaps = 173/367 (47%)
Query: 60 FIADFQPIVQQFSLQYSIRNTKE-ATKTLILVS---QPDHC----------LN----DLL 101
F + F+ E K L VS +P L L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 102 YRWNIGTLALNIVGVVSNHTT---HKKLVENYQLPFYYLPMTEQNKIESEQ-KLINIIEK 157
+I LA ++ N TT K+L++NY M ++ + L + +
Sbjct: 97 EGNDIHALAAKLLQ--ENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVGE 151
Query: 158 NNVELM-------------------------ILARYMQILSDHLCH---------KMTGR 183
N +L+ ++ ++ ++ L K+ +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 184 IINIHH-----------SFL---P-SFKGANPYKQAYEYGVKIIGAT--AHYAI-C---E 222
+NI +L P S P +IG AHY +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISC----P----------LIGVIQLAHYVVTAKLLG 257
Query: 223 LDAGPIIEQDVVR-----VT-HAQTI------------EDYIA-----------IG---- 249
G E +R T H+Q + E + IG
Sbjct: 258 FTPG---E---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 250 ------------------------------KNIEAKVLTK---AVNAHIQ--QRVFI--- 271
N+ + + N+H+ ++V I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 272 NKRKTIV 278
N K +V
Sbjct: 372 NGAKNLV 378
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP:
b.46.1.1 c.65.1.1
Length = 260
Score = 43.3 bits (101), Expect = 6e-05
Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGR 183
+K + + + +T ++++ ++ N E ++ + I+ + T
Sbjct: 47 QKFKKENESKYNTTIITNKDELT-----FEKVKLINPEYILFPHWSWIIPKEIFENFT-- 99
Query: 184 IINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229
+ H + LP +G +P + E G+K +A +D G I
Sbjct: 100 CVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIF 145
>1u8s_A Glycine cleavage system transcriptional repressor, putative;
structural genomics, protein structure initiative (PSI),
domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5
d.58.18.5
Length = 192
Score = 40.9 bits (95), Expect = 3e-04
Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 11/174 (6%)
Query: 1 MSSY-ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL 59
++ + ++T I + + ++ GCNI+D L M IS + +
Sbjct: 3 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITR- 61
Query: 60 FIADFQPIVQQFSLQYSIRNT----KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVG 115
+ QQ L ++ T + + V L ++ I
Sbjct: 62 VETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGM 121
Query: 116 VVSNHTTHKKLVENYQLPFYYLPMT-----EQNKIESEQKLINIIEKNNVELMI 164
+ T K + + +++ ++ N ++ +++ + +V+ +
Sbjct: 122 ASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDVQGSL 175
>2nyi_A Unknown protein; protein structure initiative, PSI, center for
eukaryotic structural genomics, CESG, structural
genomics; 1.80A {Galdieria sulphuraria}
Length = 195
Score = 38.6 bits (89), Expect = 0.002
Identities = 16/174 (9%), Positives = 45/174 (25%), Gaps = 14/174 (8%)
Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF 60
S+++++ I L N+ + + +S +
Sbjct: 3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQ 62
Query: 61 ------IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIV 114
+ FQ ++ S + + + + V PD ++ + +
Sbjct: 63 SALESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDS--EGIVEA--VTAVLAKKG 118
Query: 115 GVVSNHTTHKKLVENYQLPFYYLPMT----EQNKIESEQKLINIIEKNNVELMI 164
+ T + + E L + E+ V++ +
Sbjct: 119 ANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVDIDL 172
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 30.5 bits (68), Expect = 0.48
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQ 36
S ++T+T +T+ + + LS G +L++ Q
Sbjct: 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQ 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.2 bits (64), Expect = 1.3
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 7/26 (26%)
Query: 57 MKLFIADFQPIVQQFSLQYSIRNTKE 82
+KL+ D P +L +I+ T E
Sbjct: 29 LKLYADDSAP-----AL--AIKATME 47
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus HB8} PDB: 2yw4_A
Length = 207
Score = 27.2 bits (60), Expect = 4.0
Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 137 LPMTEQNKIESEQKLI---------NIIEKNNVELMILARYMQILSDHLCHKMTGRIINI 187
+ + + +E+ + L + E + A ++S L ++
Sbjct: 44 ITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQAR 103
Query: 188 HHSFLPSFKGANPYKQAYEYGVKII 212
+LP ++A G+ +
Sbjct: 104 GVPYLPGVLTPTEVERALALGLSAL 128
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP:
c.1.10.1
Length = 225
Score = 27.2 bits (60), Expect = 4.2
Identities = 10/104 (9%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 153 NIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKII 212
+++++ + A +++ + + ++ LP + Y G +
Sbjct: 84 TVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRF 143
Query: 213 -----GATAHYAICELDAGPIIEQDVVRV--THAQTIEDYIAIG 249
+ A + GP + + + +Y+A+
Sbjct: 144 KLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALP 187
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein structure initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis H37RV}
Length = 495
Score = 27.0 bits (59), Expect = 5.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 224 DAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLT 258
GP+I + +E YIA G A+++
Sbjct: 326 QIGPLISEK-----QRTRVEGYIAKGIEEGARLVC 355
>1omw_A G-protein coupled receptor kinase 2; WD-40 repeat, transferase;
2.50A {Bos taurus} SCOP: a.91.1.1 b.55.1.1 d.144.1.7
PDB: 1ym7_A 2bcj_A* 3cik_A 1bak_A
Length = 689
Score = 26.8 bits (59), Expect = 5.7
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 24/154 (15%)
Query: 19 IIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIR 78
+IP + DI F++ DT + Q + + F L S R
Sbjct: 470 LIPPRGEVNAADAFDIGSFDEEDTK-------------GIKLLDSDQELYRNFPLTISER 516
Query: 79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPF---- 134
+E +T+ + + + L + + PF
Sbjct: 517 WQQEVAETVFDTINAETDRLEARKKTKNKQLGHEEDYALGKDCIMHGYMSKMGNPFLTQW 576
Query: 135 -----YYLPMTEQNKIESE--QKLINIIEKNNVE 161
Y P + + E E Q L+ + E +VE
Sbjct: 577 QRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVE 610
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 26.8 bits (59), Expect = 6.0
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 224 DAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLT 258
GP++ ++ I+D I G + A ++T
Sbjct: 341 HIGPVVSKE-----QYDKIQDLIQSGIDEGATLVT 370
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 26.2 bits (57), Expect = 8.6
Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 175 HLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVV 234
+G++ N + + ++ + ++ GP+I
Sbjct: 275 DSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAA-- 332
Query: 235 RVTHAQTIEDYIAIGKNIEAKVLT 258
+ +E +A A+V
Sbjct: 333 ---ALERVEQKVARAVEEGARVAF 353
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 26.2 bits (57), Expect = 9.0
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 154 IIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIG 213
+++ V+ + I++ ++ ++ R + + P A A E G + +
Sbjct: 67 VLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALK 126
Query: 214 ATAHYAI----CELDAGPIIEQDVVRVT---HAQTIEDYIAIG 249
A + + V + + +I G
Sbjct: 127 IFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAG 169
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B*
Length = 561
Score = 26.3 bits (57), Expect = 9.7
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 225 AGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQ 266
AG + Q V A I+ G+ + A +
Sbjct: 84 AGRVALQGASLVDDA--IKS----GEIYTGEGYRYLHGAFSK 119
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,415,164
Number of extensions: 106363
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 32
Length of query: 288
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 197
Effective length of database: 3,487,026
Effective search space: 686944122
Effective search space used: 686944122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.9 bits)