RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Score = 271 bits (693), Expect = 2e-73 Identities = 116/282 (41%), Positives = 175/282 (62%), Gaps = 5/282 (1%) Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIA 62 ++LT++CPS + + L C + +++ F+D +++ F+R F Sbjct: 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRV 69 Query: 63 D-----FQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117 D F+PI ++F +Q++I + K LI+VS+ +HCL DLL+RW +G L ++IVG+V Sbjct: 70 DALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIV 129 Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177 SNH L + LPF + P+T K + E + +++ E + EL+ILARYMQ+LS Sbjct: 130 SNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQVLSPEAS 189 Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 ++ R INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPIIEQ V RV Sbjct: 190 ARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVD 249 Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 H+ E +A+G+++E L +AV A I++RVF+N +T+VF Sbjct: 250 HSYRPEQLLAVGRDVECITLARAVKAFIERRVFLNGDRTVVF 291 >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Score = 235 bits (600), Expect = 1e-62 Identities = 108/282 (38%), Positives = 175/282 (62%), Gaps = 3/282 (1%) Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---M 57 M ++ L I CP I + + ++L++ I + S +D + FMR +T + Sbjct: 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDL 79 Query: 58 KLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117 F F PI ++FS+ + I ++ + + +++ S+ HCL DLL+RW+ L +I V+ Sbjct: 80 DGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVI 139 Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177 SNH + +VE + +P+Y++P+ ++K + ++ ++ + ++++LARYMQIL LC Sbjct: 140 SNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPPQLC 199 Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 + ++INIHHSFLPSF GA PY QA GVK+IGAT HY ELDAGPIIEQDVVRV+ Sbjct: 200 REYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVS 259 Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 H +IE+ + G+++E VL + + AH++ RV ++ KT+VF Sbjct: 260 HRDSIENMVRFGRDVEKMVLARGLRAHLEDRVLVHDNKTVVF 301 >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Score = 229 bits (584), Expect = 7e-61 Identities = 118/281 (41%), Positives = 176/281 (62%), Gaps = 4/281 (1%) Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC---MKL 59 Y+LT++CP I S + +L G NILD Q+ND ++ FMR+ F + Sbjct: 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLAS 65 Query: 60 FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSN 119 F I +F++ + +R+ + K ++LVSQ DHCL D+LYRW +G L + +VSN Sbjct: 66 LRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSN 125 Query: 120 HTTHKKLVENYQ-LPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 H ++ +PFY+ P+ + + + E + +I + + +L++LARYMQILSD + Sbjct: 126 HPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSA 185 Query: 179 KMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238 ++ GR INIHHSFLP FKGA PY QA++ GVK+IGATAHY LD GPII+QDV R++H Sbjct: 186 RLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISH 245 Query: 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 T D + G++IE +VL++A++ H+ RV +N RKT+VF Sbjct: 246 RDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVF 286 >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Score = 224 bits (573), Expect = 2e-59 Identities = 117/278 (42%), Positives = 168/278 (60%), Gaps = 2/278 (0%) Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL--F 60 ++ILT CPS ++ YL Q C + + F+D + + F+R+ F F Sbjct: 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGF 67 Query: 61 IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120 A + F + + + K +I+VS+ DHCLNDLLYR IG L +++V VVSNH Sbjct: 68 RAGLAERSEAFGMAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNH 127 Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180 + L +++P+Y+ + ++K E+K++ +IE+ EL+ILARYMQ+LS LC ++ Sbjct: 128 PDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQVLSPELCRRL 187 Query: 181 TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240 G INIHHS LP FKGA PY QAY GVK++GATAHY +LD GPII Q V V H+ Sbjct: 188 DGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPIIAQGVEVVDHSH 247 Query: 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIV 278 ED IA G++IE L +AV HI++RVF+N +T+V Sbjct: 248 YPEDLIAKGRDIECLTLARAVGYHIERRVFLNANRTVV 285 >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Score = 224 bits (572), Expect = 2e-59 Identities = 120/278 (43%), Positives = 178/278 (64%), Gaps = 2/278 (0%) Query: 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTC-MKLFIA 62 Y+L++ C I S + +L G NI++ QFND D+SK FMR+S + F + Sbjct: 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNS 67 Query: 63 DFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTT 122 F +V++++ ++ R + K +I+VS+ DHCL DLLYR +G L + +VG++SNH Sbjct: 68 AFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPR 127 Query: 123 HKKLV-ENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMT 181 V +PF+YLP+T K E ++ NI+ ++ +L++LARYMQILSD L ++ Sbjct: 128 EALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLS 187 Query: 182 GRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQT 241 GR INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPII QDV V+H + Sbjct: 188 GRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDS 247 Query: 242 IEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 ED + G++IE +VL++AV ++ R+ +N +T+VF Sbjct: 248 AEDLVRKGRDIERRVLSRAVLLFLEDRLIVNGERTVVF 285 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Score = 145 bits (368), Expect = 8e-36 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 3/199 (1%) Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKL---VENYQLPFYYLPMTE 141 ++L+S L ++ + + V SN L + + Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61 Query: 142 QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY 201 ++ +++LI+ I+ ++++LA +M+ILS GR++NIH S LP + G + + Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121 Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261 +QA E G + G + H+ ELD GP+I Q V V + +D A + E + + Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181 Query: 262 NAHIQQRVFINKRKTIVFP 280 + R+ +++ + Sbjct: 182 SWFADGRLKMHENAAWLDG 200 >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Length = 215 Score = 141 bits (356), Expect = 2e-34 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 2/195 (1%) Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNK 144 + +L+S L L ++ ++ I V+SN+ + L+ + + K Sbjct: 10 RVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVV--KRK 67 Query: 145 IESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQA 204 + + ++ +++V+L+ LA +M IL + +IINIH S LPSFKG N +QA Sbjct: 68 PLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQA 127 Query: 205 YEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAH 264 Y+ GVKI G T HY ELDAGPII Q V V T E + E K V Sbjct: 128 YKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLI 187 Query: 265 IQQRVFINKRKTIVF 279 Q ++ + T+ Sbjct: 188 AQDKIKLCDDGTVQC 202 >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Score = 133 bits (335), Expect = 6e-32 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 3/198 (1%) Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHK--KLVENYQLPFYYLPMTE- 141 + +L+S L L+ + I V+SN E +P + Sbjct: 2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61 Query: 142 QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY 201 +N++E + + ++E+ +++++ LA +M+ILS K G+++NIH S LPSFKG+N + Sbjct: 62 KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAH 121 Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261 +QA E GV + G T H+ ++DAG II Q+ V V T+ K E K+ A+ Sbjct: 122 EQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAAL 181 Query: 262 NAHIQQRVFINKRKTIVF 279 V + + I + Sbjct: 182 QLVASGTVQLGENGKICW 199 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Score = 116 bits (290), Expect = 8e-27 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 3/205 (1%) Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYL---PMTE 141 K +LVS L ++ G + +I V+S++ + + Sbjct: 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEF 62 Query: 142 QNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPY 201 +K E E+++ ++K VEL++LA +M+ILS + ++INIH S +P+F+G + Sbjct: 63 PSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQ 122 Query: 202 KQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAV 261 KQA E+GVK G T H +DAGP+I Q VV V E K+L + V Sbjct: 123 KQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTV 182 Query: 262 NAHIQQRVFINKRKTIVFPAYPNNY 286 Q R+ I+ RK IV A Sbjct: 183 QWFAQDRIIIDGRKVIVKDATYGTL 207 >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Length = 314 Score = 111 bits (279), Expect = 2e-25 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 18/170 (10%) Query: 112 NIVGVVSN------------HTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNN 159 N+VGV + + K L E LP + Q Q+ ++ + Sbjct: 28 NVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF------QPVSLRPQENQQLVAELQ 81 Query: 160 VELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYA 219 ++M++ Y IL + IN+H S LP ++GA P +++ G G T Sbjct: 82 ADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQM 141 Query: 220 ICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRV 269 LD G ++ + +T T + + L + Sbjct: 142 DVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTA 191 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Score = 87.6 bits (216), Expect = 3e-18 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 3/198 (1%) Query: 85 KTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLP--FYYLPMTEQ 142 + ++L S L LL +G +V V + + F Sbjct: 14 RLVVLASGTGSLLRSLL-DAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHP 72 Query: 143 NKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYK 202 ++ + + + +L++ A +M+IL + GR +N H + LP+F G + Sbjct: 73 SRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVA 132 Query: 203 QAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVN 262 A YGVK+ GAT H D GPI+ Q V V E K E ++L AV Sbjct: 133 DALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVA 192 Query: 263 AHIQQRVFINKRKTIVFP 280 A V + R + Sbjct: 193 ALATHGVTVVGRTATMGR 210 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Score = 84.3 bits (208), Expect = 3e-17 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 15/161 (9%) Query: 112 NIVGVVSN---------HTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVEL 162 I + ++ + + +L +P Y + + I + + ++ Sbjct: 25 EISAIFTHTDNPGEKAFYGSVARLAAERGIPVY------APDNVNHPLWVERIAQLSPDV 78 Query: 163 MILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICE 222 + Y ++ D + N+H S LP ++G P G G T H + Sbjct: 79 IFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKR 138 Query: 223 LDAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNA 263 DAG I+ Q + + + ++L + + A Sbjct: 139 ADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPA 179 >1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 Length = 91 Score = 53.2 bits (128), Expect = 7e-08 Identities = 14/76 (18%), Positives = 31/76 (40%) Query: 4 YILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIAD 63 I+T+ I + + ++ G NI DISQ + + +S + Sbjct: 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNE 65 Query: 64 FQPIVQQFSLQYSIRN 79 F+ Q +++ +I++ Sbjct: 66 FEAFGQTLNVKINIQS 81 >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 Score = 47.7 bits (112), Expect = 3e-06 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 7/140 (5%) Query: 112 NIVGVVS------NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMIL 165 +VGV + E +P + + K ++ ++ + EL +L Sbjct: 47 EVVGVFTVPDKDGKADPLGLEAEKDGVPVFK-YSRWRAKGQALPDVVAKYQALGAELNVL 105 Query: 166 ARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDA 225 Q + + I H S LP +GA+ +G K G + +A LD Sbjct: 106 PFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDT 165 Query: 226 GPIIEQDVVRVTHAQTIEDY 245 G ++ Q V T+ Sbjct: 166 GDLLLQKECEVLPDDTVSTL 185 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.9 bits (106), Expect = 2e-05 Identities = 55/364 (15%), Positives = 96/364 (26%), Gaps = 177/364 (48%) Query: 2 SSYILT--ITCPSNEEITSII-----PDYLSTQGCNILDIS--QFNDL------------ 40 Y+L+ I+CP +I Y+ T +L + + Sbjct: 228 KDYLLSIPISCP-------LIGVIQLAHYVVT--AKLLGFTPGELRSYLKGATGHSQGLV 278 Query: 41 --------DTSKLFMRISFVFNTCMKL--FIA----------DFQPIVQQFSLQY----- 75 D+ + F + + FI P + + SL+ Sbjct: 279 TAVAIAETDSWESFFVSV---RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335 Query: 76 ----SIRN-TKEATKTLILVSQPDHCLNDL-----LYRWNIGTLAL-----NIVGVVSNH 120 SI N T+E + + + + L + ++L N+V VS Sbjct: 336 SPMLSISNLTQEQVQDYV-----NKTNSHLPAGKQVE------ISLVNGAKNLV--VSGP 382 Query: 121 TTHKKLVE-NYQL-----PFYYLPMTEQNKIE-SEQKLINIIEKNNVELMILARYMQILS 173 + L N L P +Q++I SE+KL Sbjct: 383 P--QSLYGLNLTLRKAKAP----SGLDQSRIPFSERKL---------------------- 414 Query: 174 DHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAH--YAICEL-DAGPIIE 230 + FLP + + H L A +I Sbjct: 415 ------------KFSNRFLP------------------VASPFHSHL----LVPASDLIN 440 Query: 231 QDVVR-------------VTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTI 277 +D+V+ V D + +I + V+ I+ V T Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI----SERIVDCIIRLPV--KWETTT 494 Query: 278 VFPA 281 F A Sbjct: 495 QFKA 498 Score = 38.8 bits (90), Expect = 0.001 Identities = 54/367 (14%), Positives = 94/367 (25%), Gaps = 173/367 (47%) Query: 60 FIADFQPIVQQFSLQYSIRNTKE-ATKTLILVS---QPDHC----------LN----DLL 101 F + F+ E K L VS +P L L Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96 Query: 102 YRWNIGTLALNIVGVVSNHTT---HKKLVENYQLPFYYLPMTEQNKIESEQ-KLINIIEK 157 +I LA ++ N TT K+L++NY M ++ + L + + Sbjct: 97 EGNDIHALAAKLLQ--ENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVGE 151 Query: 158 NNVELM-------------------------ILARYMQILSDHLCH---------KMTGR 183 N +L+ ++ ++ ++ L K+ + Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211 Query: 184 IINIHH-----------SFL---P-SFKGANPYKQAYEYGVKIIGAT--AHYAI-C---E 222 +NI +L P S P +IG AHY + Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISC----P----------LIGVIQLAHYVVTAKLLG 257 Query: 223 LDAGPIIEQDVVR-----VT-HAQTI------------EDYIA-----------IG---- 249 G E +R T H+Q + E + IG Sbjct: 258 FTPG---E---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311 Query: 250 ------------------------------KNIEAKVLTK---AVNAHIQ--QRVFI--- 271 N+ + + N+H+ ++V I Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371 Query: 272 NKRKTIV 278 N K +V Sbjct: 372 NGAKNLV 378 >1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 Length = 260 Score = 43.3 bits (101), Expect = 6e-05 Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 124 KKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKMTGR 183 +K + + + +T ++++ ++ N E ++ + I+ + T Sbjct: 47 QKFKKENESKYNTTIITNKDELT-----FEKVKLINPEYILFPHWSWIIPKEIFENFT-- 99 Query: 184 IINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229 + H + LP +G +P + E G+K +A +D G I Sbjct: 100 CVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIF 145 >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192 Score = 40.9 bits (95), Expect = 3e-04 Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 11/174 (6%) Query: 1 MSSY-ILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKL 59 ++ + ++T I + + ++ GCNI+D L M IS + + Sbjct: 3 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITR- 61 Query: 60 FIADFQPIVQQFSLQYSIRNT----KEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVG 115 + QQ L ++ T + + V L ++ I Sbjct: 62 VETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGM 121 Query: 116 VVSNHTTHKKLVENYQLPFYYLPMT-----EQNKIESEQKLINIIEKNNVELMI 164 + T K + + +++ ++ N ++ +++ + +V+ + Sbjct: 122 ASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDVQGSL 175 >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195 Score = 38.6 bits (89), Expect = 0.002 Identities = 16/174 (9%), Positives = 45/174 (25%), Gaps = 14/174 (8%) Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF 60 S+++++ I L N+ + + +S + Sbjct: 3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQ 62 Query: 61 ------IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIV 114 + FQ ++ S + + + + V PD ++ + + Sbjct: 63 SALESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDS--EGIVEA--VTAVLAKKG 118 Query: 115 GVVSNHTTHKKLVENYQLPFYYLPMT----EQNKIESEQKLINIIEKNNVELMI 164 + T + + E L + E+ V++ + Sbjct: 119 ANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVDIDL 172 >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Length = 415 Score = 30.5 bits (68), Expect = 0.48 Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQ 36 S ++T+T +T+ + + LS G +L++ Q Sbjct: 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQ 45 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.2 bits (64), Expect = 1.3 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 7/26 (26%) Query: 57 MKLFIADFQPIVQQFSLQYSIRNTKE 82 +KL+ D P +L +I+ T E Sbjct: 29 LKLYADDSAP-----AL--AIKATME 47 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Length = 207 Score = 27.2 bits (60), Expect = 4.0 Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 9/85 (10%) Query: 137 LPMTEQNKIESEQKLI---------NIIEKNNVELMILARYMQILSDHLCHKMTGRIINI 187 + + + +E+ + L + E + A ++S L ++ Sbjct: 44 ITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAALAQAR 103 Query: 188 HHSFLPSFKGANPYKQAYEYGVKII 212 +LP ++A G+ + Sbjct: 104 GVPYLPGVLTPTEVERALALGLSAL 128 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Length = 225 Score = 27.2 bits (60), Expect = 4.2 Identities = 10/104 (9%), Positives = 33/104 (31%), Gaps = 7/104 (6%) Query: 153 NIIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKII 212 +++++ + A +++ + + ++ LP + Y G + Sbjct: 84 TVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRF 143 Query: 213 -----GATAHYAICELDAGPIIEQDVVRV--THAQTIEDYIAIG 249 + A + GP + + + +Y+A+ Sbjct: 144 KLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALP 187 >3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein structure initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis H37RV} Length = 495 Score = 27.0 bits (59), Expect = 5.2 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%) Query: 224 DAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLT 258 GP+I + +E YIA G A+++ Sbjct: 326 QIGPLISEK-----QRTRVEGYIAKGIEEGARLVC 355 >1omw_A G-protein coupled receptor kinase 2; WD-40 repeat, transferase; 2.50A {Bos taurus} SCOP: a.91.1.1 b.55.1.1 d.144.1.7 PDB: 1ym7_A 2bcj_A* 3cik_A 1bak_A Length = 689 Score = 26.8 bits (59), Expect = 5.7 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 24/154 (15%) Query: 19 IIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIADFQPIVQQFSLQYSIR 78 +IP + DI F++ DT + Q + + F L S R Sbjct: 470 LIPPRGEVNAADAFDIGSFDEEDTK-------------GIKLLDSDQELYRNFPLTISER 516 Query: 79 NTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPF---- 134 +E +T+ + + + L + + PF Sbjct: 517 WQQEVAETVFDTINAETDRLEARKKTKNKQLGHEEDYALGKDCIMHGYMSKMGNPFLTQW 576 Query: 135 -----YYLPMTEQNKIESE--QKLINIIEKNNVE 161 Y P + + E E Q L+ + E +VE Sbjct: 577 QRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVE 610 >3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} Length = 497 Score = 26.8 bits (59), Expect = 6.0 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 5/35 (14%) Query: 224 DAGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLT 258 GP++ ++ I+D I G + A ++T Sbjct: 341 HIGPVVSKE-----QYDKIQDLIQSGIDEGATLVT 370 >2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* Length = 479 Score = 26.2 bits (57), Expect = 8.6 Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 5/84 (5%) Query: 175 HLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVV 234 +G++ N + + ++ + ++ GP+I Sbjct: 275 DSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAA-- 332 Query: 235 RVTHAQTIEDYIAIGKNIEAKVLT 258 + +E +A A+V Sbjct: 333 ---ALERVEQKVARAVEEGARVAF 353 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Length = 212 Score = 26.2 bits (57), Expect = 9.0 Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 7/103 (6%) Query: 154 IIEKNNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIG 213 +++ V+ + I++ ++ ++ R + + P A A E G + + Sbjct: 67 VLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALK 126 Query: 214 ATAHYAI----CELDAGPIIEQDVVRVT---HAQTIEDYIAIG 249 A + + V + + +I G Sbjct: 127 IFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAG 169 >3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* Length = 561 Score = 26.3 bits (57), Expect = 9.7 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 6/42 (14%) Query: 225 AGPIIEQDVVRVTHAQTIEDYIAIGKNIEAKVLTKAVNAHIQ 266 AG + Q V A I+ G+ + A + Sbjct: 84 AGRVALQGASLVDDA--IKS----GEIYTGEGYRYLHGAFSK 119 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.137 0.402 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,415,164 Number of extensions: 106363 Number of successful extensions: 294 Number of sequences better than 10.0: 1 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 32 Length of query: 288 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 197 Effective length of database: 3,487,026 Effective search space: 686944122 Effective search space used: 686944122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 56 (25.9 bits)