BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate
deformylase [Candidatus Liberibacter asiaticus str. psy62]
         (288 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 288

 Score =  597 bits (1539), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF 60
           MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF
Sbjct: 1   MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLF 60

Query: 61  IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120
           IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH
Sbjct: 61  IADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNH 120

Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180
           TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM
Sbjct: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180

Query: 181 TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240
           TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ
Sbjct: 181 TGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTHAQ 240

Query: 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNYFQ 288
           TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNYFQ
Sbjct: 241 TIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNYFQ 288


>gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 205

 Score = 72.4 bits (176), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 113 IVGVVSNHTTHKKLVE--NYQLPFYYLPMTEQ-NKIESEQKLINIIEKNNVELMILARYM 169
           IVGV S+++  + LV+    ++P + +P  +  ++ E E+ ++  +     +L+ LA YM
Sbjct: 33  IVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYM 92

Query: 170 QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229
           ++LS         +I+NIH S LP F G + +++  + G+KI G T H     +D GPII
Sbjct: 93  RLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPII 152

Query: 230 EQDVVRVTHAQT 241
            Q  V V+   T
Sbjct: 153 AQAAVPVSSQDT 164


>gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 310

 Score = 32.0 bits (71), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180
             HKK  + + LP   L  T+  + E EQ L       N ++ ++  Y  ++   + +  
Sbjct: 50  AVHKK-AQEFSLP--ALVPTKLGQEEYEQFL-----SFNADVAVVVAYGLVIPQRILNAT 101

Query: 181 TGRIINIHHSFLPSFKGANPYKQAY-----EYGVKIIGATAHYAICELDAGPI 228
                N H S LP ++GA P ++A      E G+ I+    H     LD GP+
Sbjct: 102 KLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKH-----LDTGPV 149


>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 542

 Score = 26.2 bits (56), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 43  SKLFMRISFVF--NTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCL 97
           S++  RIS     N+ ++++I +++P   +      ++NT+E    L+ VSQ   CL
Sbjct: 478 SRIIYRISGTDTENSTLRVYIDNYEPDSSKH-----LKNTQEMLSDLVEVSQRISCL 529


>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 22.3 bits (46), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 13  NEEITSIIPDYLSTQGCNILDISQ-FNDLDTSKLF--MRIS 50
           N  +  +IP YL+    +I+ ISQ   ++D++ LF  +R+S
Sbjct: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,641
Number of Sequences: 1233
Number of extensions: 7713
Number of successful extensions: 17
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 288
length of database: 328,796
effective HSP length: 73
effective length of query: 215
effective length of database: 238,787
effective search space: 51339205
effective search space used: 51339205
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 38 (19.2 bits)