Query gi|254780912|ref|YP_003065325.1| hypothetical protein CLIBASIA_04055 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:32:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780912.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n1fa_ a.26.1.3 (A:) Interleu 16.3 34 0.0025 14.1 1.9 48 7-54 82-138 (156)
2 d1q5za_ a.196.1.1 (A:) Invasio 13.7 25 0.0018 14.8 0.7 17 52-68 122-138 (145)
3 d1wvfa1 d.58.32.1 (A:243-521) 9.4 27 0.002 14.7 -0.3 15 46-60 259-273 (279)
4 d2a6qa1 d.306.1.1 (A:10-92) An 5.8 88 0.0064 11.8 2.5 18 6-23 52-69 (83)
5 d2hjsa1 c.2.1.3 (A:3-129,A:320 5.5 91 0.0066 11.8 0.8 16 49-64 121-136 (144)
6 d3bzka1 a.60.2.6 (A:474-563) T 5.3 96 0.007 11.6 2.1 28 16-45 8-35 (90)
7 d1rp4a_ a.227.1.1 (A:) Endopla 3.9 1.2E+02 0.0089 11.1 0.9 20 21-40 286-305 (374)
8 d2gola1 a.61.1.1 (A:7-107) HIV 3.9 99 0.0072 11.6 0.0 17 17-33 43-59 (101)
9 d2g17a1 c.2.1.3 (A:1-153,A:309 3.3 60 0.0044 12.8 -1.5 15 50-64 147-161 (179)
10 d2cvoa1 c.2.1.3 (A:68-218,A:38 3.2 82 0.006 12.0 -0.9 24 39-64 136-159 (183)
No 1
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.25 E-value=34 Score=14.14 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6863699999999999999999999---------97422002278765432231018
Q gi|254780912|r 7 SLLSLPSFMKSLLRSLELCSQIMQC---------VSKEKNTINKASVRAGARNAISN 54 (68)
Q Consensus 7 sllslpsfmksllrslelcsqimqc---------vskekntinkasvragarnaisn 54 (68)
.+-|+-.+..+|-+.|..|-.-..| +..-+++..+-.+.+|+..||+.
T Consensus 82 ~v~sLan~f~~L~~~L~~C~~~~~C~~~~~~~~~v~~~~~~~~kl~~~~g~~KAiGE 138 (156)
T d1n1fa_ 82 KISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGE 138 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 798999999999999986755157888528999999999999973516788999989
No 2
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=13.73 E-value=25 Score=14.85 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=13.4
Q ss_pred HCCCHHHHHHHHHHHHC
Q ss_conf 01828999999985429
Q gi|254780912|r 52 ISNPGKYVISGLLEGLL 68 (68)
Q Consensus 52 isnpgkyvisgllegll 68 (68)
...|..|+.||+|.||.
T Consensus 122 lk~etdylls~~LDgli 138 (145)
T d1q5za_ 122 LKGETDYVLSNVLDGLI 138 (145)
T ss_dssp TGGGSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 45763289999999875
No 3
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Probab=9.45 E-value=27 Score=14.69 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=8.5
Q ss_pred HHHHHHHCCCHHHHH
Q ss_conf 432231018289999
Q gi|254780912|r 46 AGARNAISNPGKYVI 60 (68)
Q Consensus 46 agarnaisnpgkyvi 60 (68)
+=--+.|-|||||-|
T Consensus 259 alDP~~IlNPGK~Gi 273 (279)
T d1wvfa1 259 AVDPNNILAPGRSGI 273 (279)
T ss_dssp HHCTTCCBCTTGGGC
T ss_pred HHCCCCCCCCCCCCC
T ss_conf 819886779897889
No 4
>d2a6qa1 d.306.1.1 (A:10-92) Antitoxin YefM {Escherichia coli [TaxId: 562]}
Probab=5.79 E-value=88 Score=11.84 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 668636999999999999
Q gi|254780912|r 6 LSLLSLPSFMKSLLRSLE 23 (68)
Q Consensus 6 lsllslpsfmksllrsle 23 (68)
+.|||-|.+++.|.++.+
T Consensus 52 l~lls~p~n~~~L~~s~~ 69 (83)
T d2a6qa1 52 AYLLRSPANARRLMDSID 69 (83)
T ss_dssp HHHHHSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH
T ss_conf 999719899999999999
No 5
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.50 E-value=91 Score=11.78 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=11.8
Q ss_pred HHHHCCCHHHHHHHHH
Q ss_conf 2310182899999998
Q gi|254780912|r 49 RNAISNPGKYVISGLL 64 (68)
Q Consensus 49 rnaisnpgkyvisgll 64 (68)
.+-|+|||-|.++-++
T Consensus 121 ~~iIANPgC~t~~~ll 136 (144)
T d2hjsa1 121 PFLLSSPAALNAVLLG 136 (144)
T ss_dssp SCEEECCCHHHHHHHH
T ss_pred CCEECCCCHHHHHHHH
T ss_conf 9878367389999999
No 6
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.25 E-value=96 Score=11.65 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997422002278765
Q gi|254780912|r 16 KSLLRSLELCSQIMQCVSKEKNTINKASVR 45 (68)
Q Consensus 16 ksllrslelcsqimqcvskekntinkasvr 45 (68)
+-|.++|+.+ +..||+.-+-.||.|+..
T Consensus 8 ~~L~~~l~~~--~~~~v~~vgidiN~As~~ 35 (90)
T d3bzka1 8 LKLARSLDAV--VEDCVNAVGVDVNTASAA 35 (90)
T ss_dssp HHHHHHHHHH--HHHHHHHHCEETTTCCHH
T ss_pred HHHHHHHHHH--HHHHHHHCCEEHHHCCHH
T ss_conf 9999999999--998633146514139899
No 7
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.88 E-value=1.2e+02 Score=11.06 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999974220022
Q gi|254780912|r 21 SLELCSQIMQCVSKEKNTIN 40 (68)
Q Consensus 21 slelcsqimqcvskekntin 40 (68)
-..--|.||.||.=+|--.-
T Consensus 286 ~frnisriMDCV~CeKCrLw 305 (374)
T d1rp4a_ 286 RFKNVTKIMDCVQCDRCRLW 305 (374)
T ss_dssp HHHHHHHGGGGCCSHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999716676376756
No 8
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.87 E-value=99 Score=11.57 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997
Q gi|254780912|r 17 SLLRSLELCSQIMQCVS 33 (68)
Q Consensus 17 sllrslelcsqimqcvs 33 (68)
+||.+-|=|.|||.-..
T Consensus 43 ~LLeT~eGC~qil~qlq 59 (101)
T d2gola1 43 GLLETSEGCRQILGQLQ 59 (101)
T ss_dssp GGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 02335999999999846
No 9
>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=3.27 E-value=60 Score=12.76 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHCCCHHHHHHHHH
Q ss_conf 310182899999998
Q gi|254780912|r 50 NAISNPGKYVISGLL 64 (68)
Q Consensus 50 naisnpgkyvisgll 64 (68)
+-|+|||-|..+-+|
T Consensus 147 ~~IAnPGCyaTa~~l 161 (179)
T d2g17a1 147 NLIAVPGLLKGAAAQ 161 (179)
T ss_dssp SEEECCCTTTTTHHH
T ss_pred CEEECCCCHHHHHHH
T ss_conf 999858965999999
No 10
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=3.16 E-value=82 Score=12.03 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 22787654322310182899999998
Q gi|254780912|r 39 INKASVRAGARNAISNPGKYVISGLL 64 (68)
Q Consensus 39 inkasvragarnaisnpgkyvisgll 64 (68)
+|+...+.+-. |+|||-|.++-+|
T Consensus 136 ~~r~~i~~a~~--IANPgC~~t~~~l 159 (183)
T d2cvoa1 136 VLRNEIRNARL--VANPGLVKGASGQ 159 (183)
T ss_dssp HHHHHHHHCSE--EECCCTTTTTHHH
T ss_pred HHHHHHHHCCE--EECCCCHHHHHHH
T ss_conf 77999860898--3089847999999
Done!