BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780912|ref|YP_003065325.1| hypothetical protein
CLIBASIA_04055 [Candidatus Liberibacter asiaticus str. psy62]
(68 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780912|ref|YP_003065325.1| hypothetical protein CLIBASIA_04055 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 134 bits (336), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MINNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRAGARNAISNPGKYVI 60
MINNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRAGARNAISNPGKYVI
Sbjct: 1 MINNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTINKASVRAGARNAISNPGKYVI 60
Query: 61 SGLLEGLL 68
SGLLEGLL
Sbjct: 61 SGLLEGLL 68
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 23.1 bits (48), Expect = 0.99, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 30 QCVSKEKNTINKASVRAGARNAISN 54
+CV +E TIN+ +V G + + +
Sbjct: 91 KCVIREGVTINRGTVEYGGKTIVGD 115
>gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62]
Length = 424
Score = 22.7 bits (47), Expect = 1.2, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 16 KSLLRSLELCSQIMQCVS 33
+S LR+LE+ Q+M C S
Sbjct: 348 RSYLRALEISKQVMFCGS 365
>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Length = 701
Score = 21.9 bits (45), Expect = 2.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 3 NNPLSLLSLPSFMKSLLRSLELCSQIMQCVSKEKNTIN 40
++PLS+L+ S + SL C +SK + +N
Sbjct: 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLN 348
>537021.9.peg.477_1
Length = 235
Score = 20.8 bits (42), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 48 ARNAISNPGKYVISGLLEGLL 68
ARN + P K+ I ++ G +
Sbjct: 93 ARNDVKTPAKFYILSIVMGFV 113
>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 419
Score = 20.8 bits (42), Expect = 4.3, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 20 RSLELCSQIMQCVSKEKN 37
R+L+ CS+I+ + K+K+
Sbjct: 36 RTLQKCSKIIDSIYKKKS 53
>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
asiaticus str. psy62]
Length = 265
Score = 20.4 bits (41), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 21 SLELCSQIMQCVSKEKNTINKA 42
+LE SQ+++ V + + T+N A
Sbjct: 159 ALEGLSQLLETVEEVRRTVNSA 180
>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 805
Score = 20.0 bits (40), Expect = 7.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 2 INNPLSLLSLPSFMKSLLRSLELCSQI-MQCVSKEKNTI 39
I+ PLS S+P +K L LC M CV +N +
Sbjct: 191 ISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNV 229
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,586
Number of Sequences: 1233
Number of extensions: 920
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space: 8140561
effective search space used: 8140561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)