HHsearch alignment for GI: 254780913 and conserved domain: COG1158
>COG1158 Rho Transcription termination factor [Transcription].
Probab=90.18 E-value=0.27 Score=28.16 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=36.0
Q ss_pred CCCEEEEEECC--CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCC-CCCC
Q ss_conf 88746588548--8778837999950002358844689988999999869997-1110
Q gi|254780913|r 13 DKGYGFITPEG--STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSA 67 (78)
Q Consensus 13 ~kGfGFI~~d~--~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~g-k~~A 67 (78)
T Consensus 62 ~dGfGFLR~~~~~yl~~~~DiYvSpSQIRrf~---LrtGD~v~G~vR~-Pke~Ery~a 115 (422)
T COG1158 62 PDGFGFLRSADSSYLPGPDDIYVSPSQIRRFN---LRTGDTVEGKVRP-PKEGERYFA 115 (422)
T ss_pred CCCCCEEECCCCCCCCCCCCEEECHHHHHHCC---CCCCCEEEEEECC-CCCCCCEEE
T ss_conf 67742440576455789776678789986506---7668877666448-876430000