HHsearch alignment for GI: 254780913 and conserved domain: COG1278

>COG1278 CspC Cold shock proteins [Transcription].
Probab=99.91  E-value=5.7e-25  Score=160.32  Aligned_cols=67  Identities=45%  Similarity=0.830  Sum_probs=61.3

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
T Consensus         1 ~~~GtVKwfn~~KGfGFI~p~---~G~~DvFVH~Sai~~~g~~~L~eGQ~V~f~~~~g~kg--p~A~nv~~~   67 (67)
T COG1278           1 MATGTVKWFNATKGFGFITPE---DGGKDVFVHISAIQRAGFRTLREGQKVEFEVEQGRKG--PSAANVRAL   67 (67)
T ss_pred             CCCCEEEEEECCCCCEEECCC---CCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCC--CCEEEEEEC
T ss_conf             986168885089863370789---9985779980125127886557998899999528999--722678829