HHsearch alignment for GI: 254780913 and conserved domain: PRK05054

>PRK05054 exoribonuclease II; Provisional.
Probab=96.93  E-value=0.0022  Score=39.81  Aligned_cols=60  Identities=20%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf             7762775146887465885488778837999950002358844689988999999869997111059996357
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK   75 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~   75 (78)
T Consensus        22 v~G~~~~--~~~GfGFv~~d----~~~difI~~~~~~~-----a~~GD~V~v~v~~~--~~r~~~~~~~iv~r   81 (644)
T PRK05054         22 VEGVVKA--TEKGFGFLEVD----AKKSYFIPPPQMKK-----VMHGDRIIAVIHTE--KERESAEPEELIEP   81 (644)
T ss_pred             EEEEEEE--ECCCCEEEEEC----CCCCEEECHHHHHH-----CCCCCEEEEEEEEC--CCCCEEEEEEEEEE
T ss_conf             8999999--48963898508----98657699899944-----78999999999854--99846789999995