HHsearch alignment for GI: 254780913 and conserved domain: PRK05054
>PRK05054 exoribonuclease II; Provisional.
Probab=96.93 E-value=0.0022 Score=39.81 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=41.3
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf 7762775146887465885488778837999950002358844689988999999869997111059996357
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~ 75 (78)
T Consensus 22 v~G~~~~--~~~GfGFv~~d----~~~difI~~~~~~~-----a~~GD~V~v~v~~~--~~r~~~~~~~iv~r 81 (644)
T PRK05054 22 VEGVVKA--TEKGFGFLEVD----AKKSYFIPPPQMKK-----VMHGDRIIAVIHTE--KERESAEPEELIEP 81 (644)
T ss_pred EEEEEEE--ECCCCEEEEEC----CCCCEEECHHHHHH-----CCCCCEEEEEEEEC--CCCCEEEEEEEEEE
T ss_conf 8999999--48963898508----98657699899944-----78999999999854--99846789999995