HHsearch alignment for GI: 254780913 and conserved domain: PRK11642
>PRK11642 exoribonuclease R; Provisional.
Probab=97.71 E-value=9.9e-05 Score=47.35 Aligned_cols=65 Identities=23% Similarity=0.450 Sum_probs=49.1
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~ 77 (78)
T Consensus 85 v~G~v~~--~~~GfgFv~~e~---~~eDifI~~~~l~~-----a~~GDrVlvr~~~~~r~gr~Eg~Vv~IleR~~ 149 (813)
T PRK11642 85 LKGTVIG--HRDGYGFLRVEG---RKDDLYLSSEQMKT-----CIHGDQVLAQPLGADRKGRREARIVRVLVPKT 149 (813)
T ss_pred EEEEEEE--CCCCCEEEECCC---CCCCEEECHHHHCC-----CCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 6899998--888777887079---87770008467432-----67999999998247788986179999995188