HHsearch alignment for GI: 254780913 and conserved domain: PRK11642

>PRK11642 exoribonuclease R; Provisional.
Probab=97.71  E-value=9.9e-05  Score=47.35  Aligned_cols=65  Identities=23%  Similarity=0.450  Sum_probs=49.1

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             776277514688746588548877883799995000235884468998899999986999711105999635788
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS   77 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i~~~~   77 (78)
T Consensus        85 v~G~v~~--~~~GfgFv~~e~---~~eDifI~~~~l~~-----a~~GDrVlvr~~~~~r~gr~Eg~Vv~IleR~~  149 (813)
T PRK11642         85 LKGTVIG--HRDGYGFLRVEG---RKDDLYLSSEQMKT-----CIHGDQVLAQPLGADRKGRREARIVRVLVPKT  149 (813)
T ss_pred             EEEEEEE--CCCCCEEEECCC---CCCCEEECHHHHCC-----CCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf             6899998--888777887079---87770008467432-----67999999998247788986179999995188