HHsearch alignment for GI: 254780913 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=92.22 E-value=0.18 Score=29.16 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=37.1
Q ss_pred CCCEEEEEEC--CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 8874658854--887788379999500023588446899889999998699971110599963
Q gi|254780913|r 13 DKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 13 ~kGfGFI~~d--~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
T Consensus 26 ~dGyGFLR~~~~nYlp~pdDiYVS~sqIrrf~---LR~GD~V~G~iR~-p~~ge-aL~~V~~V 83 (379)
T PRK12608 26 GKGFGFLRSPERNYLPSPDDVYVSPALIRRFG---LRTGDLVEGVIRA-PREKE-TLVRIDSV 83 (379)
T ss_pred CCCCEEEECCCCCCCCCCCCEEECHHHHHHCC---CCCCCEEEEEECC-CCCCH-HHEEEHHC
T ss_conf 89975835898788999988100999997549---9999989998638-99874-20414523