HHsearch alignment for GI: 254780913 and conserved domain: TIGR02063
>TIGR02063 RNase_R ribonuclease R; InterPro: IPR011805 This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in Escherichia coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Not included in this entry are shorter, divergent forms from the Chlamydiae and the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans , .; GO: 0003723 RNA binding, 0004518 nuclease activity.
Probab=96.31 E-value=0.0084 Score=36.58 Aligned_cols=67 Identities=19% Similarity=0.512 Sum_probs=48.1
Q ss_pred CCEEEEEECCCCEEEEEECCCC--CCCCEEEEEEEECCCCCCCCCCC--CCEEEEEEEECCCC--C-CCCCEEEEECCCC
Q ss_conf 7627751468874658854887--78837999950002358844689--98899999986999--7-1110599963578
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGST--ESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN--G-KYSAENLKLVPKS 76 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~--d~g~DvFvH~s~i~~~g~~~l~~--G~~V~F~i~~~~~~--g-k~~A~~v~~i~~~ 76 (78)
T Consensus 76 ~G~~~--~~~~GfgF~~~~~~~~~~~~~d~~~~~~~~~~-----a~~G~gD~V~~~~~~~~~~~~~~~~eg~v~kil~r~ 148 (755)
T TIGR02063 76 KGTVI--AHRDGFGFLRPEDDKYDEDEEDIFIPPEELNG-----AMHGLGDRVLVKITGKEDEKKGDRAEGRVIKILERA 148 (755)
T ss_pred EEEEE--ECCCCCEEEEECCCCCCCCCCCEEECHHHHHH-----HHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCC
T ss_conf 99999--63765137885045576556511107588866-----434899789999603643458798525899996088
Q ss_pred C
Q ss_conf 8
Q gi|254780913|r 77 S 77 (78)
Q Consensus 77 ~ 77 (78)
T Consensus 149 ~ 149 (755)
T TIGR02063 149 N 149 (755)
T ss_pred C
T ss_conf 7