HHsearch alignment for GI: 254780913 and conserved domain: pfam00313
>pfam00313 CSD 'Cold-shock' DNA-binding domain.
Probab=99.88 E-value=1.6e-22 Score=146.64 Aligned_cols=66 Identities=44% Similarity=0.827 Sum_probs=60.2
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 77627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
T Consensus 1 ~tG~VK~f~~~kGfGFI~~~---~~~~DiFvH~s~l~~~~~~~L~~G~~V~f~v~~~~kG--~~A~nV~~i 66 (66)
T pfam00313 1 MTGTVKWFNAKKGFGFITPE---DGDKDVFVHFSAIQGDGFRSLQEGQRVEFDIVEGTKG--PQAANVTLL 66 (66)
T ss_pred CCEEEEEEECCCCEEEEEEC---CCCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf 94899999599996999978---9984699992681214786179999999999979998--663899989