HHsearch alignment for GI: 254780913 and conserved domain: pfam00313

>pfam00313 CSD 'Cold-shock' DNA-binding domain.
Probab=99.88  E-value=1.6e-22  Score=146.64  Aligned_cols=66  Identities=44%  Similarity=0.827  Sum_probs=60.2

Q ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             77627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         3 ~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
T Consensus         1 ~tG~VK~f~~~kGfGFI~~~---~~~~DiFvH~s~l~~~~~~~L~~G~~V~f~v~~~~kG--~~A~nV~~i   66 (66)
T pfam00313         1 MTGTVKWFNAKKGFGFITPE---DGDKDVFVHFSAIQGDGFRSLQEGQRVEFDIVEGTKG--PQAANVTLL   66 (66)
T ss_pred             CCEEEEEEECCCCEEEEEEC---CCCCEEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf             94899999599996999978---9984699992681214786179999999999979998--663899989