HHsearch alignment for GI: 254780913 and conserved domain: smart00357
>smart00357 CSP Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Probab=99.83 E-value=1.7e-20 Score=135.39 Aligned_cols=64 Identities=44% Similarity=0.848 Sum_probs=57.3
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 7627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 (78)
Q Consensus 4 ~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i 73 (78)
T Consensus 1 tG~Vk~f~--kGfGFI~~~---~g~~DvFvH~s~i~-~~~~~l~~Gd~V~f~v~~~~~~~~~~A~~v~~l 64 (64)
T smart00357 1 TGVVKWFN--KGFGFIRPD---DGGKDVFVHPSQIQ-GGLKSLREGDEVEFKVVSPRGGGKPEAENVVKL 64 (64)
T ss_pred CCEEEEEE--CCEEEEEEC---CCCCCEEEEHHHHC-CCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEC
T ss_conf 94796982--844888618---99940999869954-677744758789999998899998441898979