HHsearch results for GI: 254780913 and protein with PDBid: 1a62_A

>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=94.11  E-value=0.045  Score=31.29  Aligned_cols=65  Identities=18%  Similarity=0.374  Sum_probs=41.8

Q ss_pred             CCEEEEEECCCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCC-EEEEEC
Q ss_conf             762775146887465885--4887788379999500023588446899889999998699971110-599963
Q gi|254780913|r    4 RGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA-ENLKLV   73 (78)
Q Consensus         4 ~G~VKwfn~~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A-~~v~~i   73 (78)
                      .|++.-.  ..||||+..  .+...+..||||..|.|+..+   |++|+.|+=.+..-..+-|+-| ..|.-+
T Consensus        52 eG~Lei~--~dg~GflR~~~~~y~~~~~DiyVs~sqirrf~---Lr~Gd~v~G~~r~p~~~er~~al~~v~~v  119 (130)
T 1a62_A           52 DGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEV  119 (130)
T ss_dssp             EEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEE
T ss_pred             EEEEEEC--CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCCEEEHHH
T ss_conf             7788861--78743453576577998344104999999848---97444567775289888775100451341