HHsearch results for GI: 254780913 and protein with PDBid: 3l0o_A

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=92.95  E-value=0.099  Score=29.40  Aligned_cols=50  Identities=24%  Similarity=0.492  Sum_probs=35.7

Q ss_pred             CCCEEEEEE-C-CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             887465885-4-8877883799995000235884468998899999986999711
Q gi|254780913|r   13 DKGYGFITP-E-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY   65 (78)
Q Consensus        13 ~kGfGFI~~-d-~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~   65 (78)
                      ..||||+.. + +...+..||||..|.|+..+   |+.|+.|+..+..-..+-|+
T Consensus        66 ~dg~GflR~~~~~y~~~~~Diyvs~~qir~f~---Lr~Gd~v~g~~r~p~~~e~~  117 (427)
T 3l0o_A           66 PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFN---LNTGDIISGVIRKPKEGEKY  117 (427)
T ss_dssp             TTSCEEEECGGGTTCCCSSCEEECHHHHHHTT---CCTTCEEEEEEECCCSSSCS
T ss_pred             CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCC
T ss_conf             89867986686688899878034889984717---88899899988557778775