HHSEARCH alignment of GI: 254780913 and SCOP domain: d1a62a2

Alignment

Probab=96.09  E-value=0.0046  Score=35.48  Aligned_cols=59  Identities=15%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             CCCEEEEEE--CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCC-CCCEEEEECC
Q ss_conf             887465885--4887788379999500023588446899889999998699971-1105999635
Q gi|254780913|r   13 DKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLVP   74 (78)
Q Consensus        13 ~kGfGFI~~--d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk-~~A~~v~~i~   74 (78)
                      ..|||||..  .+..-+-.||||..|.|+..+   |+.|+.|+=.+.....+-| ++...|..+.
T Consensus        12 ~dGyGFLR~~~~~y~~~~~DiyVs~s~Irrfg---LR~GD~V~G~vr~p~~~ek~~~L~~V~~VN   73 (78)
T d1a62a2          12 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVN   73 (78)
T ss_dssp             TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEET
T ss_pred             CCCCEEEECCCCCCCCCCCCEEECHHHHHHHC---CCCCCEEEEEEECCCCCCCCEEEEEEEEEC
T ss_conf             89828958886577988761677999999829---986758999888898888751058996467

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Rho termination factor, RNA-binding domain
species: Escherichia coli [TaxId: 562]