HHSEARCH alignment of GI: 254780913 and SCOP domain: d1c9oa_

Alignment

Probab=99.87  E-value=5.2e-23  Score=146.85  Aligned_cols=66  Identities=42%  Similarity=0.808  Sum_probs=59.9

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
                      |++|+|||||++||||||++|    +|+|||+|+|+|+.++++.|.+|++|+|++.+++++  ++|.+|+.|
T Consensus         1 M~~G~Vk~fn~~kGfGFI~~d----~g~DiF~H~s~l~~~~~~~L~~G~~V~f~~~~~~~G--~~A~~V~~l   66 (66)
T d1c9oa_           1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG--PQAANVVKL   66 (66)
T ss_dssp             CEEEEEEEEETTTTEEEEEET----TEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE--EEEEEEEEC
T ss_pred             CCCEEEEEEECCCCEEEEEEC----CCCEEEEEEHHCCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf             998199999799998999866----993399990462613687689999999999989999--797888979

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Major cold shock protein
species: Bacillus caldolyticus [TaxId: 1394]