HHSEARCH alignment of GI: 254780913 and SCOP domain: d1mjca_

Alignment

Probab=99.87  E-value=6e-23  Score=146.50  Aligned_cols=67  Identities=39%  Similarity=0.720  Sum_probs=60.2

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             877627751468874658854887788379999500023588446899889999998699971110599963
Q gi|254780913|r    2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV   73 (78)
Q Consensus         2 m~~G~VKwfn~~kGfGFI~~d~~~d~g~DvFvH~s~i~~~g~~~l~~G~~V~F~i~~~~~~gk~~A~~v~~i   73 (78)
                      ..+|+|||||.+||||||+||   ++++|||||+|+|+..+++.|.+||+|+|++.+++++  ++|.||+.|
T Consensus         3 r~~G~Vk~f~~~kGfGFI~~d---~g~~diFvH~s~l~~~~~~~L~~G~~V~f~~~~~~~G--~~A~~V~~l   69 (69)
T d1mjca_           3 KMTGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG--PAAGNVTSL   69 (69)
T ss_dssp             CEEEEEEEEETTTTEEEEEET---TSCCCEEEEGGGBCCTTTCCCCTTCEEEEEEECCSSS--CEEEEEEEC
T ss_pred             CEEEEEEEEECCCCEEEEEEC---CCCCCEEEEHHHHCCCCCCCCCCCCEEEEEEEECCCC--CEEEEEEEC
T ss_conf             788999999399997999976---8983299995890522798689999999999959899--677879949

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Major cold shock protein
species: Escherichia coli [TaxId: 562]