BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus
Liberibacter asiaticus str. psy62]
(78 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|237815887|ref|ZP_04594884.1| cold-shock family protein [Brucella abortus str. 2308 A]
gi|237789185|gb|EEP63396.1| cold-shock family protein [Brucella abortus str. 2308 A]
Length = 110
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 42 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 99 SGRSSADNL 107
>gi|17986801|ref|NP_539435.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
gi|17982433|gb|AAL51699.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
Length = 101
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 33 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 89
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 90 SGRSSADNL 98
>gi|82700304|ref|YP_414878.1| cold shock DNA-binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|297248768|ref|ZP_06932486.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
bv. 5 str. B3196]
gi|82616405|emb|CAJ11468.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
2308]
gi|297175937|gb|EFH35284.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
bv. 5 str. B3196]
Length = 101
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 33 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 89
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 90 SGRSSADNL 98
>gi|158424300|ref|YP_001525592.1| cold shock DNA-binding domain-containing protein [Azorhizobium
caulinodans ORS 571]
gi|158331189|dbj|BAF88674.1| cold-shock DNA-binding domain [Azorhizobium caulinodans ORS 571]
Length = 117
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP+KG+GFI P+ G D F+H SAV AGL L EGQ V YD V +
Sbjct: 48 MTTGTVKWFNPEKGFGFIAPDD---GGADAFVHISAVERAGLPPLREGQKVNYDLVADKR 104
Query: 62 NGKYSAENLKLVP 74
+GK SA NL LVP
Sbjct: 105 SGKSSASNLTLVP 117
>gi|239832368|ref|ZP_04680697.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
gi|239824635|gb|EEQ96203.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
Length = 110
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 42 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRR 98
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 99 SGRSSADNL 107
>gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254040590|gb|ACT57386.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 78
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND
Sbjct: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
Query: 61 ANGKYSAENLKLVPKSSN 78
ANGKYSAENLKLVPKSSN
Sbjct: 61 ANGKYSAENLKLVPKSSN 78
>gi|148559048|ref|YP_001259374.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|148370305|gb|ABQ60284.1| cold-shock family protein [Brucella ovis ATCC 25840]
Length = 105
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 42 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98
Query: 62 NGKYSA 67
+G+ SA
Sbjct: 99 SGRSSA 104
>gi|207724747|ref|YP_002255144.1| hypothetical transcription regulator protein [Ralstonia
solanacearum MolK2]
gi|206589970|emb|CAQ36931.1| hypothetical transcription regulator protein [Ralstonia
solanacearum MolK2]
Length = 131
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q
Sbjct: 64 IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGP 120
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 121 KGK--QASNIQ 129
>gi|300697692|ref|YP_003748353.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum
CFBP2957]
gi|299074416|emb|CBJ53966.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum
CFBP2957]
Length = 128
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q
Sbjct: 61 IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGP 117
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 118 KGK--QASNIQ 126
>gi|34498661|ref|NP_902876.1| cold shock transcription regulator protein [Chromobacterium
violaceum ATCC 12472]
gi|34104514|gb|AAQ60872.1| cold shock transcription regulator protein [Chromobacterium
violaceum ATCC 12472]
Length = 110
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E GDDVF H S + + G +L E Q V++D V+
Sbjct: 44 MATGTVKWFNDSKGFGFITPD---EGGDDVFAHFSQINAKGFRSLAENQRVSFDIVEGPK 100
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 101 GK--QASNIQPI 110
>gi|269954913|ref|YP_003324702.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269303594|gb|ACZ29144.1| cold-shock DNA-binding domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 67
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI PE DVF H SA+ + G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGYGFIAPED---GSQDVFAHYSAIQTNGYRTLEEGQRVEFDTAQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--LQAENIRAL 67
>gi|58040591|ref|YP_192555.1| cold shock protein [Gluconobacter oxydans 621H]
gi|58003005|gb|AAW61899.1| Cold shock protein [Gluconobacter oxydans 621H]
Length = 96
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H S + AG+ L EGQ V+Y+ ++
Sbjct: 29 MATGTVKWFNSTKGFGFIQPDN---GGQDAFVHISELERAGMHTLNEGQHVSYEL-ESGR 84
Query: 62 NGKYSAENLKLV 73
NGK SA ++K +
Sbjct: 85 NGKTSAVSIKAI 96
>gi|220911419|ref|YP_002486728.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|325961974|ref|YP_004239880.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
gi|219858297|gb|ACL38639.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|323468061|gb|ADX71746.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 67
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF H SA+AS+G +L E Q V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAPDD---GSADVFAHYSAIASSGYRSLDENQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|254702210|ref|ZP_05164038.1| cold shock protein CSPA [Brucella suis bv. 5 str. 513]
gi|261752785|ref|ZP_05996494.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 5 str. 513]
gi|261742538|gb|EEY30464.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 5 str. 513]
Length = 69
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 1 MATGTVKWFNATKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 58 SGRSSADNL 66
>gi|115375489|ref|ZP_01462749.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310821373|ref|YP_003953731.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
gi|2493774|sp|P72366|CSPA_STIAD RecName: Full=Cold shock-like protein CspA
gi|1616777|gb|AAB16850.1| cold shock-like protein [Stigmatella aurantiaca DW4/3-1]
gi|115367532|gb|EAU66507.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309394445|gb|ADO71904.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
Length = 68
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H SA+ G L EGQ V ++ +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPK 57
Query: 62 NGKYSAENLKLVP 74
A+N++ +P
Sbjct: 58 G--LQAQNVRSIP 68
>gi|26987721|ref|NP_743146.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
gi|24982409|gb|AAN66610.1|AE016288_9 cold-shock domain family protein [Pseudomonas putida KT2440]
Length = 165
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ
Sbjct: 100 RQKGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 155
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 156 G--MQADKVQPV 165
>gi|312795290|ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312167065|emb|CBW74068.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 98
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFITP+ E G+D+F H SA+ G L EGQ V+++ VQ
Sbjct: 31 MATGTVKWFNDAKGYGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPK 87
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 88 GK--QASNIQ 95
>gi|116669038|ref|YP_829971.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
FB24]
gi|116609147|gb|ABK01871.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
Length = 67
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF H SA+A++G +L E Q V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAPDD---GSADVFAHYSAIATSGYRSLDENQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|227818999|ref|YP_002822970.1| cold shock protein Y4CH [Sinorhizobium fredii NGR234]
gi|227337998|gb|ACP22217.1| probable cold shock protein Y4CH [Sinorhizobium fredii NGR234]
Length = 69
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AGL L EGQ V+++ Q+
Sbjct: 1 MASGTVKWFNSTKGFGFIAPDD---GSPDVFVHISAVERAGLSTLKEGQKVSFEATQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA+NL+ +
Sbjct: 58 SGKTSADNLRAL 69
>gi|16519680|ref|NP_443800.1| putative cold-shock DNA-binding domain-containing protein
[Sinorhizobium fredii NGR234]
gi|2493775|sp|P55390|Y4CH_RHISN RecName: Full=Probable cold shock protein y4cH
gi|2182333|gb|AAB92423.1| putative cold-shock DNA-binding domain-containing protein
[Sinorhizobium fredii NGR234]
Length = 69
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G++KW+N KG+GFI P+ DVF+H SAV AGL L +GQ ++Y+ V++
Sbjct: 1 MMATGTVKWFNATKGFGFIQPDD---GSADVFVHISAVERAGLRELKDGQKISYELVKDR 57
Query: 61 ANGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 KSGKMSADNLQ 68
>gi|218281154|ref|ZP_03487680.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989]
gi|218217600|gb|EEC91138.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989]
Length = 90
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT E G DVF+H S++ S G L EGQ VTYD V++D
Sbjct: 21 MSTGKVKWFNAEKGYGFITSED----GKDVFVHYSSINSEGFKTLEEGQTVTYDVVESDR 76
Query: 62 NGKYSAENLKLVPKSS 77
A N+ +V ++
Sbjct: 77 G--QQANNVTVVDTAA 90
>gi|332715879|ref|YP_004443345.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
gi|325062564|gb|ADY66254.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
Length = 69
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ G DVF+H SAV AGL +L +GQ +TYD VQ+
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDN---GGTDVFVHISAVERAGLRSLNDGQKITYDIVQDRK 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|302869749|ref|YP_003838386.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|315503769|ref|YP_004082656.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|302572608|gb|ADL48810.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
gi|315410388|gb|ADU08505.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
Length = 67
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITP+ G DVF H SA+ ++G +L E Q V ++ Q
Sbjct: 1 MAIGTVKWFNADKGFGFITPDD---GGADVFAHFSAIQTSGYRSLDENQRVEFEVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|23502361|ref|NP_698488.1| cold-shock family protein [Brucella suis 1330]
gi|161619440|ref|YP_001593327.1| hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
gi|163843747|ref|YP_001628151.1| hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
gi|225627936|ref|ZP_03785972.1| cold-shock family protein [Brucella ceti str. Cudo]
gi|225852973|ref|YP_002733206.1| hypothetical protein BMEA_A1545 [Brucella melitensis ATCC 23457]
gi|254704745|ref|ZP_05166573.1| cold shock protein CSPA [Brucella suis bv. 3 str. 686]
gi|254708158|ref|ZP_05169986.1| cold shock protein CSPA [Brucella pinnipedialis M163/99/10]
gi|254710530|ref|ZP_05172341.1| cold shock protein CSPA [Brucella pinnipedialis B2/94]
gi|254714712|ref|ZP_05176523.1| cold shock protein CSPA [Brucella ceti M644/93/1]
gi|254717773|ref|ZP_05179584.1| cold shock protein CSPA [Brucella ceti M13/05/1]
gi|254719531|ref|ZP_05181342.1| cold shock protein CSPA [Brucella sp. 83/13]
gi|256032023|ref|ZP_05445637.1| cold shock protein CSPA [Brucella pinnipedialis M292/94/1]
gi|256045115|ref|ZP_05448016.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. Rev.1]
gi|256061545|ref|ZP_05451687.1| cold shock protein CSPA [Brucella neotomae 5K33]
gi|256160221|ref|ZP_05457915.1| cold shock protein CSPA [Brucella ceti M490/95/1]
gi|256255427|ref|ZP_05460963.1| cold shock protein CSPA [Brucella ceti B1/94]
gi|256369909|ref|YP_003107420.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260169160|ref|ZP_05755971.1| cold shock protein CSPA [Brucella sp. F5/99]
gi|260565284|ref|ZP_05835768.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260566008|ref|ZP_05836478.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 4 str. 40]
gi|261219622|ref|ZP_05933903.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261315666|ref|ZP_05954863.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261322510|ref|ZP_05961707.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261325555|ref|ZP_05964752.1| cold-shock DNA-binding domain-containing protein [Brucella
neotomae 5K33]
gi|261755443|ref|ZP_05999152.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 3 str. 686]
gi|265989135|ref|ZP_06101692.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|265991548|ref|ZP_06104105.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265998596|ref|ZP_06111153.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|306838469|ref|ZP_07471310.1| cold-shock family protein [Brucella sp. NF 2653]
gi|306843158|ref|ZP_07475777.1| cold-shock family protein [Brucella sp. BO2]
gi|306844496|ref|ZP_07477085.1| cold-shock family protein [Brucella sp. BO1]
gi|23348343|gb|AAN30403.1| cold-shock family protein [Brucella suis 1330]
gi|161336251|gb|ABX62556.1| Hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
gi|163674470|gb|ABY38581.1| Hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
gi|225617099|gb|EEH14145.1| cold-shock family protein [Brucella ceti str. Cudo]
gi|225641338|gb|ACO01252.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|256000072|gb|ACU48471.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260151352|gb|EEW86446.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260155526|gb|EEW90606.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 4 str. 40]
gi|260924711|gb|EEX91279.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261295200|gb|EEX98696.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261301535|gb|EEY05032.1| cold-shock DNA-binding domain-containing protein [Brucella
neotomae 5K33]
gi|261304692|gb|EEY08189.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261745196|gb|EEY33122.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 3 str. 686]
gi|262553220|gb|EEZ09054.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|263002332|gb|EEZ14907.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|264661332|gb|EEZ31593.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|306275107|gb|EFM56863.1| cold-shock family protein [Brucella sp. BO1]
gi|306286653|gb|EFM58214.1| cold-shock family protein [Brucella sp. BO2]
gi|306406433|gb|EFM62671.1| cold-shock family protein [Brucella sp. NF 2653]
Length = 69
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 58 SGRSSADNL 66
>gi|85703785|ref|ZP_01034889.1| Cold-shock protein [Roseovarius sp. 217]
gi|85672713|gb|EAQ27570.1| Cold-shock protein [Roseovarius sp. 217]
Length = 114
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G G DVF+H SAV AGL L + Q VT+D ++
Sbjct: 47 MATGTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADDQKVTFDI-ESGR 102
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 103 DGRESASNISL 113
>gi|62290382|ref|YP_222175.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|189024609|ref|YP_001935377.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|254689680|ref|ZP_05152934.1| cold shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|254694170|ref|ZP_05155998.1| cold shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
gi|254697823|ref|ZP_05159651.1| cold shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|254730712|ref|ZP_05189290.1| cold shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|256257931|ref|ZP_05463467.1| cold shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
gi|260546920|ref|ZP_05822659.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus NCTC 8038]
gi|260755213|ref|ZP_05867561.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|260758433|ref|ZP_05870781.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|260762259|ref|ZP_05874602.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|261214476|ref|ZP_05928757.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
gi|62196514|gb|AAX74814.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|189020181|gb|ACD72903.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|260095970|gb|EEW79847.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus NCTC 8038]
gi|260668751|gb|EEX55691.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|260672691|gb|EEX59512.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|260675321|gb|EEX62142.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|260916083|gb|EEX82944.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
Length = 69
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 58 SGRSSADNL 66
>gi|116693857|ref|YP_839390.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|116651857|gb|ABK12497.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
Length = 170
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+
Sbjct: 104 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYETKNGPK 160
Query: 62 NGKYSAENL 70
A N+
Sbjct: 161 G--LQASNI 167
>gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Corynebacterium efficiens YS-314]
gi|23494573|dbj|BAC19539.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 251
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P DVF+H S + G NL E Q V ++ +
Sbjct: 185 MAQGTVKWFNAEKGFGFIAPSD---GSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAK 241
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 242 G--PQAQQVRAL 251
>gi|23004357|ref|ZP_00047730.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 67
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI PE DVF H SA+ S G L E Q V +D Q
Sbjct: 1 MATGTVKWFNSEKGYGFIAPED---GSADVFAHYSAIQSQGFRTLEENQRVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ V
Sbjct: 58 G--PQAENIRPV 67
>gi|330469983|ref|YP_004407726.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328812954|gb|AEB47126.1| cold-shock DNA-binding domain protein [Verrucosispora maris
AB-18-032]
Length = 67
Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITP+G G DVF H SA+ S+G +L E Q V ++ VQ
Sbjct: 1 MAIGTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEVVQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|298290653|ref|YP_003692592.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296927164|gb|ADH87973.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 69
Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV AGL L EGQ V+Y+ +
Sbjct: 1 MATGTVKWFNSQKGYGFIQPD---AGSSDVFVHISAVERAGLSTLNEGQKVSYEVEADRR 57
Query: 62 NGKYSAENLKLV 73
GK SA NL+ +
Sbjct: 58 TGKSSAANLRAL 69
>gi|254786018|ref|YP_003073447.1| cold shock domain-containing protein CspD [Teredinibacter
turnerae T7901]
gi|237686702|gb|ACR13966.1| cold shock domain protein CspD [Teredinibacter turnerae T7901]
Length = 95
Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S+V G L GQ V++D Q D
Sbjct: 1 MPTGTVKWFNNAKGFGFILPEG---GGEDLFAHYSSVEMDGYRTLKAGQPVSFDIEQGDK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A++++++ ++
Sbjct: 58 G--LHAKHIRVLKTPAS 72
>gi|153009006|ref|YP_001370221.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151560894|gb|ABS14392.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 69
Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRR 57
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 58 SGRSSADNL 66
>gi|297182471|gb|ADI18634.1| cold shock proteins [uncultured Rhodospirillales bacterium
HF4000_24M03]
Length = 89
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI PE +D F+H SAV SAGL L EGQ V+Y+ Q
Sbjct: 21 MATGTVKWFNPAKGFGFIEPED---GSNDAFVHISAVESAGLTTLNEGQKVSYEL-QPGK 76
Query: 62 NGKYSAENLKLVP 74
NGK SAENL +
Sbjct: 77 NGKSSAENLSVTE 89
>gi|238060935|ref|ZP_04605644.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|237882746|gb|EEP71574.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
Length = 67
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITP+G G DVF H SA+ S+G +L E Q V ++ Q
Sbjct: 1 MAIGTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|119898894|ref|YP_934107.1| cold shock-like protein [Azoarcus sp. BH72]
gi|119671307|emb|CAL95220.1| cold shock-like protein [Azoarcus sp. BH72]
Length = 67
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE G+D+F H SA+ +G +L EGQ V ++ +
Sbjct: 1 MATGTVKWFNDAKGFGFITPEN---GGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--QQASNIRPL 67
>gi|329114551|ref|ZP_08243310.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
gi|326696031|gb|EGE47713.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
Length = 82
Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KGYGFI P+ G DVF+H +AV +AGL L +GQ V++D V+
Sbjct: 15 LMPTGTVKWFNATKGYGFIAPDD---GGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE- 70
Query: 61 ANGKYSAENLKL 72
GK +A NLK+
Sbjct: 71 -RGKQAATNLKV 81
>gi|302865133|ref|YP_003833770.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|315501633|ref|YP_004080520.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|302567992|gb|ADL44194.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
gi|315408252|gb|ADU06369.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
Length = 67
Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI+P+ G DVF H SA++++G +L E Q V +D Q
Sbjct: 1 MTTGTVKWFNADKGFGFISPDD---GGADVFAHFSAISASGFRSLDENQKVEFDITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|290963042|ref|YP_003494224.1| cold shock protein [Streptomyces scabiei 87.22]
gi|260652568|emb|CBG75701.1| putative cold shock protein [Streptomyces scabiei 87.22]
Length = 96
Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ VT+D Q
Sbjct: 30 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQK 86
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 87 G--PQAENITP 95
>gi|15965864|ref|NP_386217.1| cold shock transcription regulator protein [Sinorhizobium
meliloti 1021]
gi|150397206|ref|YP_001327673.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|307309620|ref|ZP_07589273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307321759|ref|ZP_07601147.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|15075133|emb|CAC46690.1| Probable cold shock transcription regulator [Sinorhizobium
meliloti 1021]
gi|150028721|gb|ABR60838.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|306892581|gb|EFN23379.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306899955|gb|EFN30577.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 69
Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AGL L +GQ V+++ Q+
Sbjct: 1 MASGTVKWFNSTKGFGFIQPDD---GAADVFVHISAVERAGLSTLKDGQKVSFELTQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA+NL+ +
Sbjct: 58 SGKTSADNLRAL 69
>gi|311742699|ref|ZP_07716508.1| CspA family cold shock transcriptional regulator [Aeromicrobium
marinum DSM 15272]
gi|311314327|gb|EFQ84235.1| CspA family cold shock transcriptional regulator [Aeromicrobium
marinum DSM 15272]
Length = 67
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI P+ +DVF H +A+ S+G +L E Q V +D Q
Sbjct: 1 MATGTVKWFNADKGFGFIAPDD---GSEDVFAHFTAIQSSGYRSLNENQKVEFDVEQGQK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANIRPL 67
>gi|315498658|ref|YP_004087462.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
gi|315416670|gb|ADU13311.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
Length = 69
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G+DVF+H SAV +GL L EGQ VT++ ++
Sbjct: 1 MSTGTVKWFNGTKGYGFIQPDD---GGNDVFVHISAVERSGLRGLNEGQKVTFELARDKR 57
Query: 62 NGKYSAENLKL 72
+GK SAENL++
Sbjct: 58 SGKMSAENLQV 68
>gi|227535413|ref|ZP_03965462.1| CspA family cold shock transcriptional regulator [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227187009|gb|EEI67076.1| CspA family cold shock transcriptional regulator [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 99
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D
Sbjct: 33 LMEHGTVKWFNAEKGYGFITRED----GSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 88
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 89 RG--PQAVNVNK 98
>gi|159185613|ref|NP_357478.2| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|159140747|gb|AAK90263.2| cold shock protein [Agrobacterium tumefaciens str. C58]
Length = 69
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ +L +GQ ++Y+ VQ+
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDN---GGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLQ 67
>gi|152967580|ref|YP_001363364.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
SRS30216]
gi|151362097|gb|ABS05100.1| putative cold-shock DNA-binding domain protein [Kineococcus
radiotolerans SRS30216]
Length = 67
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT + G DVF+H SA+ + G +L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNSEKGYGFITVDD---GGADVFVHYSAITADGYRSLEEGQRVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
AE+++ +
Sbjct: 58 G--PQAESVRAL 67
>gi|219882627|ref|YP_002477791.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|219861633|gb|ACL41974.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
Length = 67
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF H SA+AS+G +L E Q V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAPDD---GSADVFAHYSAIASSGYRSLDENQKVQFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIQPL 67
>gi|86157415|ref|YP_464200.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197121458|ref|YP_002133409.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|220916162|ref|YP_002491466.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85773926|gb|ABC80763.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196171307|gb|ACG72280.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|219954016|gb|ACL64400.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 67
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G GDDVF H +A+ + G L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGDDVFCHHTAIQADGFRTLAEGQKVEFDVTRGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANVRAI 67
>gi|145593188|ref|YP_001157485.1| cold-shock DNA-binding domain-containing protein [Salinispora
tropica CNB-440]
gi|145302525|gb|ABP53107.1| cold-shock DNA-binding protein family [Salinispora tropica
CNB-440]
Length = 67
Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITP+G G DVF H SA+A++G +L E Q V +D Q
Sbjct: 1 MTTGTVKWFNADKGFGFITPDG---GGADVFAHFSAIATSGFRSLDENQKVEFDITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|197123689|ref|YP_002135640.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|196173538|gb|ACG74511.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
Length = 67
Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ S G +L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQSEGFRSLAEGQKVEFDVTKGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANVRPL 67
>gi|170741171|ref|YP_001769826.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium sp. 4-46]
gi|168195445|gb|ACA17392.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 73
Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G++KW+N KG+GFI P+ G DVF+H SAV +GL L+EGQ V+Y+ +
Sbjct: 4 MMSTGTVKWFNGQKGFGFIQPDD---GGKDVFVHISAVERSGLQTLSEGQKVSYELETDR 60
Query: 61 ANGKYSAENLK 71
+GK SA +L+
Sbjct: 61 RSGKQSAGSLR 71
>gi|115379755|ref|ZP_01466829.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|115363242|gb|EAU62403.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 85
Score = 97.4 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT +G G+DVF H +A+ + G +LTEGQ V ++ +
Sbjct: 19 MATGVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPK 75
Query: 62 NGKYSAENLKLV 73
A+N+K +
Sbjct: 76 G--LQAQNVKPI 85
>gi|332671934|ref|YP_004454942.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340972|gb|AEE47555.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
484]
Length = 67
Score = 97.4 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ G DVF H SA+ S+G +L E Q V +D Q
Sbjct: 1 MPVGTVKWFNAEKGFGFIAPDD---GGPDVFAHYSAIQSSGYRSLEENQKVQFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQASNITPL 67
>gi|284031585|ref|YP_003381516.1| cold-shock DNA-binding domain-containing protein [Kribbella
flavida DSM 17836]
gi|283810878|gb|ADB32717.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
17836]
Length = 67
Score = 97.4 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITP+ G DVF H SA+ ++G +L E Q V ++ Q
Sbjct: 1 MAVGTVKWFNADKGFGFITPDD---GGADVFAHYSAIQTSGFRSLDENQRVEFEITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--LQAENIRPI 67
>gi|159036600|ref|YP_001535853.1| cold-shock DNA-binding domain-containing protein [Salinispora
arenicola CNS-205]
gi|157915435|gb|ABV96862.1| cold-shock DNA-binding domain protein [Salinispora arenicola
CNS-205]
Length = 67
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI+P+G G DVF H SA++++G +L E Q V ++ Q
Sbjct: 1 MATGTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFEITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|323136224|ref|ZP_08071306.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322398298|gb|EFY00818.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 70
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EGQ V+Y+ V +
Sbjct: 1 MATGTVKWFNSQKGFGFIQPD---AGGADVFVHISAVERAGLRDLLEGQKVSYEVVVDTR 57
Query: 62 NGKYSAENLKL 72
GK SA+NL++
Sbjct: 58 RGKSSADNLQI 68
>gi|269127093|ref|YP_003300463.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268312051|gb|ACY98425.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
DSM 43183]
Length = 68
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N +KGYGFI +G G DVF+H SA+ S+G L E Q V ++ Q
Sbjct: 1 MPQQGTVKWFNAEKGYGFIAVDG---DGPDVFVHYSAIQSSGYRTLDENQRVEFEVTQGS 57
Query: 61 ANGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 RG--PQADQVRPL 68
>gi|296447314|ref|ZP_06889242.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296255179|gb|EFH02278.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 69
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ +G DVF+H SAV AGL +L EGQ + Y+ Q+
Sbjct: 1 MATGTVKWFNAQKGYGFIQPDD---NGKDVFVHISAVERAGLRDLREGQKLDYELTQDRR 57
Query: 62 NGKYSAENLKLV 73
GK +A+ LK +
Sbjct: 58 TGKSAADRLKAL 69
>gi|294509040|ref|YP_003565929.1| cold shock domain protein [Bacillus megaterium QM B1551]
gi|294352344|gb|ADE72666.1| cold shock domain protein [Bacillus megaterium QM B1551]
Length = 130
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G++KW+N DKG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q
Sbjct: 64 IMTQGTVKWFNADKGFGFIEIE----GGDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQGQ 119
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 120 RG--AQAANVHK 129
>gi|330466858|ref|YP_004404601.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328809829|gb|AEB44001.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 67
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFIT +G G DVF+H SA+ S+G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQSSGYRTLEENQRVEFEIAQGQK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEQVRPL 67
>gi|220918462|ref|YP_002493766.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956316|gb|ACL66700.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 67
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ + G +L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSLAEGQKVEFDVTKGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANVRPI 67
>gi|223973253|gb|ACN30814.1| unknown [Zea mays]
Length = 444
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61
Query: 62 NGKYSAENLKLVPKSSN 78
+G+ A ++ P S+
Sbjct: 62 DGRTKAVDVTG-PDGSS 77
>gi|163793339|ref|ZP_02187314.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
proteobacterium BAL199]
gi|159181141|gb|EDP65656.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
proteobacterium BAL199]
Length = 70
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G G D F+H SAV +GL +L EGQ V Y+ V +
Sbjct: 1 MATGTVKWFNAQKGFGFIEPDG---GGSDAFVHISAVERSGLSDLREGQKVDYELVSDRK 57
Query: 62 NGKYSAENLKLVP 74
+GK SA+NLK++
Sbjct: 58 SGKMSADNLKVLD 70
>gi|226495947|ref|NP_001141714.1| hypothetical protein LOC100273843 [Zea mays]
gi|194705650|gb|ACF86909.1| unknown [Zea mays]
Length = 303
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 60 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 115
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 116 DGRTKAVDVT 125
>gi|256114052|ref|ZP_05454822.1| cold shock protein CSPA [Brucella melitensis bv. 3 str. Ether]
gi|265995386|ref|ZP_06107943.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|262766499|gb|EEZ12288.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
Length = 69
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G +VF+H SAV AGL L EGQ V+Y+ VQ+
Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGTNVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57
Query: 62 NGKYSAENL 70
+G+ SA+NL
Sbjct: 58 SGRSSADNL 66
>gi|238062414|ref|ZP_04607123.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|237884225|gb|EEP73053.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
Length = 67
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI+P+G G DVF H SA++++G +L E Q V +D Q
Sbjct: 1 MTTGTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFDITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|115377442|ref|ZP_01464645.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|115365540|gb|EAU64572.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 100
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V +D +
Sbjct: 34 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPK 90
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 91 G--LQAQNVR 98
>gi|254454339|ref|ZP_05067776.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
238]
gi|198268745|gb|EDY93015.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
238]
Length = 152
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VT+D +
Sbjct: 85 MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTFDV-EAGR 140
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 141 DGRESAVNLAL 151
>gi|170743586|ref|YP_001772241.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium sp. 4-46]
gi|168197860|gb|ACA19807.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 69
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KGYGFI P+ G DVF+H SAV AGL L EGQ V+Y+ +
Sbjct: 1 MNTGTVKWFNDQKGYGFIQPDD---GGKDVFVHISAVERAGLRGLAEGQKVSYELQTDKR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKVAAANLQ 67
>gi|326331965|ref|ZP_08198251.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
gi|325950278|gb|EGD42332.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
Length = 67
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ + G L E Q V +D Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAQED---GGDDVFVHYSAIQTQGYKTLDENQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENVRPL 67
>gi|170745542|ref|YP_001766999.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170659143|gb|ACB28197.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EGQ + YD +
Sbjct: 1 MATGTVKWFNETKGYGFIQPDD---GGKDVFVHISAVERAGLRSLNEGQKIAYDVEADRR 57
Query: 62 NGKYSAENLK 71
+GK SA NLK
Sbjct: 58 SGKESAANLK 67
>gi|27379706|ref|NP_771235.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27352858|dbj|BAC49860.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 75
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ V+++ V +
Sbjct: 7 MNTGTVKWFNGQKGFGFIQPD---QGGQDVFVHISAVERAGMSTLNEGQKVSFEIVADRR 63
Query: 62 NGKYSAENLKLV 73
GK +AENL+ V
Sbjct: 64 TGKSAAENLRAV 75
>gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
10542]
gi|269095781|gb|ACZ20217.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
10542]
Length = 67
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF H SA+ S+G +L E Q V +D Q
Sbjct: 1 MAVGTVKWFNAEKGFGFIAPED---GSADVFAHYSAIQSSGYRSLDENQKVEFDITQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|289640776|ref|ZP_06472947.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
gi|289509352|gb|EFD30280.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
Length = 67
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+P+G DVF+H SA+A+ G L E Q V +D Q
Sbjct: 1 MTQGTVKWFNAEKGFGFISPDG---GSPDVFVHFSAIATNGYKTLEENQRVEFDTTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENVRPL 67
>gi|229551920|ref|ZP_04440645.1| CspA family cold shock transcriptional regulator [Lactobacillus
rhamnosus LMS2-1]
gi|229314655|gb|EEN80628.1| CspA family cold shock transcriptional regulator [Lactobacillus
rhamnosus LMS2-1]
Length = 99
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D
Sbjct: 33 LMEHGTVKWFNAEKGYGFITRED----GSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 88
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 89 RG--PQAVNVNK 98
>gi|86156680|ref|YP_463465.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197120682|ref|YP_002132633.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|220915394|ref|YP_002490698.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85773191|gb|ABC80028.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196170531|gb|ACG71504.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|219953248|gb|ACL63632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 67
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT + G+DVF H SA++ G +L EGQ V +D V+
Sbjct: 1 MATGTVKWFNDAKGFGFITQDD---GGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--LQAANVRKV 67
>gi|145594319|ref|YP_001158616.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
gi|159037387|ref|YP_001536640.1| cold-shock DNA-binding domain-containing protein [Salinispora
arenicola CNS-205]
gi|145303656|gb|ABP54238.1| cold-shock DNA-binding protein family [Salinispora tropica
CNB-440]
gi|157916222|gb|ABV97649.1| cold-shock DNA-binding domain protein [Salinispora arenicola
CNS-205]
Length = 67
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFIT +G G DVF+H SA+ ++G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEQVRPL 67
>gi|302535905|ref|ZP_07288247.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302444800|gb|EFL16616.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 69
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKLVPKS 76
A+ +KL P
Sbjct: 57 G--PQADMVKLAPAG 69
>gi|71907020|ref|YP_284607.1| cold-shock DNA-binding protein family protein [Dechloromonas
aromatica RCB]
gi|71846641|gb|AAZ46137.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
RCB]
Length = 67
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + G+D+F H SA+ S+G LTEGQ V++D
Sbjct: 1 MATGTVKWFNDSKGFGFITPD---QGGEDLFAHFSAIQSSGFKTLTEGQKVSFDVTTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--LQASNIQPV 67
>gi|328951178|ref|YP_004368513.1| cold-shock DNA-binding domain protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451502|gb|AEB12403.1| cold-shock DNA-binding domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 73
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KGYGFI E DVF+H +A+ G L EG +VT++
Sbjct: 1 MQRGRVKWFNATKGYGFIERE----GDSDVFVHYTAINGTGFRTLNEGDIVTFEVEPGRP 56
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 57 GKGPQATNVTVVEPA 71
>gi|153006954|ref|YP_001381279.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. Fw109-5]
gi|152030527|gb|ABS28295.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 67
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ + G L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQTQGFRTLAEGQKVEFDVQRGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANVRPL 67
>gi|115375364|ref|ZP_01462627.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310819145|ref|YP_003951503.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
gi|115367648|gb|EAU66620.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309392217|gb|ADO69676.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
Length = 67
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+D+F H +A+ + G +L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDLFCHHTAIQTQGFRSLQEGQKVEFDVARGPK 57
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 58 G--LQAQNVRPV 67
>gi|119962819|ref|YP_946960.1| cold shock protein [Arthrobacter aurescens TC1]
gi|119949678|gb|ABM08589.1| putative cold shock protein [Arthrobacter aurescens TC1]
Length = 67
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+PE DVF H SA+ S+G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFISPED---GSQDVFAHYSAINSSGYRSLEENQKVSFDVEQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQAVNIQAI 67
>gi|220911902|ref|YP_002487211.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|219858780|gb|ACL39122.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
Length = 67
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+P+ S+ DVF H SA+ S+G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFISPDDSS---QDVFAHYSAINSSGFRSLEENQKVSFDTEQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQATNIQAL 67
>gi|297624347|ref|YP_003705781.1| cold-shock DNA-binding domain-containing protein [Truepera
radiovictrix DSM 17093]
gi|297165527|gb|ADI15238.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
17093]
Length = 84
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GFI +G G DVF H SA+ ++G +L EG V ++ Q
Sbjct: 1 MATGRVKWFSNEKGFGFIEQDG---GGADVFCHFSAINASGYRSLNEGDEVEFEVEQGQK 57
Query: 62 NGKYSAENLKLVPKSS 77
A+N++++ +
Sbjct: 58 G--LQAKNVEVINAAP 71
>gi|23009266|ref|ZP_00050379.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 69
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ VT+D +
Sbjct: 1 MNTGTVKWFDEIKGYGFIQPDN---GGKDVFVHISAVQQAGLRGLAEGQKVTFDIENDRR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67
>gi|119718488|ref|YP_925453.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
JS614]
gi|119539149|gb|ABL83766.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
Length = 67
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ + G +L E Q V +D Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAQED---GGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENVRPI 67
>gi|153003150|ref|YP_001377475.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. Fw109-5]
gi|152026723|gb|ABS24491.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 67
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT + G+DVF H SA+ G +L EGQ V +D V+
Sbjct: 1 MATGTVKWFNDAKGFGFITQDN---GGEDVFCHYSAIQGDGFKSLAEGQKVEFDVVKGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 G--LQAANVRK 66
>gi|238063836|ref|ZP_04608545.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|302866724|ref|YP_003835361.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|315503139|ref|YP_004082026.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|237885647|gb|EEP74475.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|302569583|gb|ADL45785.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
gi|315409758|gb|ADU07875.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
Length = 67
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFIT +G G DVF+H SA+ ++G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEQVRPI 67
>gi|323357927|ref|YP_004224323.1| cold shock proteins [Microbacterium testaceum StLB037]
gi|323274298|dbj|BAJ74443.1| cold shock proteins [Microbacterium testaceum StLB037]
Length = 70
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N +KG+GFI P+ G DVF H SA+ S G +L E Q V ++ Q
Sbjct: 3 MSTQGTVKWFNSEKGFGFIAPDD---GGQDVFAHYSAIQSGGYRSLEENQRVEFEIAQGP 59
Query: 61 ANGKYSAENLKLV 73
AE+++ +
Sbjct: 60 KG--LQAEDIRPI 70
>gi|209966586|ref|YP_002299501.1| hypothetical protein RC1_3328 [Rhodospirillum centenum SW]
gi|209960052|gb|ACJ00689.1| conserved domain protein [Rhodospirillum centenum SW]
Length = 69
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE G DVF+H SAV AGL L+EGQ V+Y+ ++
Sbjct: 1 MPVGTVKWFNSTKGYGFIQPEN---GGADVFVHISAVERAGLSTLSEGQRVSYEEQRDPR 57
Query: 62 NGKYSAENLK 71
GK SAENLK
Sbjct: 58 RGKTSAENLK 67
>gi|150377524|ref|YP_001314119.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150032071|gb|ABR64186.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 68
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AGL +L +GQ +TY+ V++
Sbjct: 1 MATGTVKWFNATKGFGFIQPDD---GSPDVFVHISAVERAGLQDLKDGQKITYELVKDRK 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKMSADNLR 67
>gi|227819992|ref|YP_002823963.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
gi|36958641|gb|AAQ87109.1| Cold shock protein cspA [Sinorhizobium fredii NGR234]
gi|227338991|gb|ACP23210.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
Length = 69
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AGL +L EGQ VTYD V+++
Sbjct: 1 MSSGTVKWFNSTKGFGFIQPDD---GSTDVFVHISAVERAGLRSLVEGQKVTYDIVRDNR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|297626180|ref|YP_003687943.1| Cold shock-like protein CspA [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921945|emb|CBL56505.1| Cold shock-like protein CspA [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 68
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI +GS+ DDVF+H SA+ S G +L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGYGFIAVDGSS---DDVFVHYSAIDSTGFRSLDEGQKVEFDIAQGPK 57
Query: 62 NGKYSAENLKLV 73
AE++KLV
Sbjct: 58 G--QQAEHVKLV 67
>gi|15805932|ref|NP_294631.1| CSD family cold shock protein [Deinococcus radiodurans R1]
gi|6458627|gb|AAF10483.1|AE001943_3 cold shock protein, CSD family [Deinococcus radiodurans R1]
Length = 133
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI EGS DVF H SA+ S+G L EG V ++
Sbjct: 48 MATGRVKWFNAEKGFGFIETEGS----ADVFAHYSAINSSGFRKLNEGDEVEFEIEPGQN 103
Query: 62 NGKYSAENLKLVPKSS 77
A+N+ + +
Sbjct: 104 GKGPQAKNIVVTKAAP 119
>gi|324997373|ref|ZP_08118485.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
sp. P1]
Length = 67
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFITP+G G D+F+H SA+ S+G +L EGQ VT++ Q
Sbjct: 1 MPQGTVKWFNAEKGYGFITPDG---GGQDLFVHFSAIQSSGYRSLDEGQAVTFEVTQGQK 57
Query: 62 NGKYSAENL 70
A+ +
Sbjct: 58 G--PQADQV 64
>gi|325962509|ref|YP_004240415.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468596|gb|ADX72281.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 67
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+P+ S+ DVF H SA+ S G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFISPDDSS---QDVFAHYSAINSNGFRSLEENQKVSFDTEQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQATNIQAL 67
>gi|116669616|ref|YP_830549.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
FB24]
gi|116609725|gb|ABK02449.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
Length = 67
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+P+ S+ DVF H SA+ S+G +L E Q V+++ Q
Sbjct: 1 MATGTVKWFNAEKGFGFISPDDSS---QDVFAHYSAINSSGFRSLEENQKVSFETEQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQATNIQAI 67
>gi|298291123|ref|YP_003693062.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296927634|gb|ADH88443.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 70
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KGYGFI P+ G DVF+H SAV +GL L +G+ ++++ +
Sbjct: 1 MADTGTVKWFNEQKGYGFIQPDS---GGKDVFVHISAVQRSGLQGLRDGEKISFELQTDQ 57
Query: 61 ANGKYSAENLKLV 73
+GK SA NL+ +
Sbjct: 58 RSGKTSAVNLRPL 70
>gi|170723167|ref|YP_001750855.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida W619]
gi|169761170|gb|ACA74486.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
Length = 197
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 128 MRDTGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183
Query: 61 ANGKYSAENLKLV 73
AE++ V
Sbjct: 184 KG--LQAEDVVAV 194
>gi|29831363|ref|NP_825997.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29608478|dbj|BAC72532.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 67
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQSVSFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 58 G--PQAENVTPL 67
>gi|83312382|ref|YP_422646.1| cold shock protein [Magnetospirillum magneticum AMB-1]
gi|82947223|dbj|BAE52087.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
Length = 69
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ GS+KW+N KGYGFI P+ G DVF+H SAV AGL L +GQ V+++ ++
Sbjct: 1 MPNGSVKWFNSTKGYGFIAPDN---GGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPR 57
Query: 62 NGKYSAENLKLV 73
GK SA NLK++
Sbjct: 58 KGKTSAVNLKVL 69
>gi|256390666|ref|YP_003112230.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256356892|gb|ACU70389.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 67
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI+ + E G DVF+H SA+ S+G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNGEKGYGFISQD---EGGPDVFVHFSAIQSSGYRSLEENQRVEFEVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ V
Sbjct: 58 G--AQAENVRPV 67
>gi|330502213|ref|YP_004379082.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
gi|328916499|gb|AEB57330.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
Length = 204
Score = 95.9 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + +Q D
Sbjct: 134 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRDK 189
Query: 62 NGKYSAENLKLVPKSSN 78
AE++ + + +
Sbjct: 190 G--LQAEDV--IAAAPS 202
>gi|146306295|ref|YP_001186760.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina ymp]
gi|145574496|gb|ABP84028.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
Length = 205
Score = 95.9 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + +Q D
Sbjct: 135 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRDK 190
Query: 62 NGKYSAENLKLVPKSSN 78
AE++ + + +
Sbjct: 191 G--LQAEDV--IAAAPS 203
>gi|115373612|ref|ZP_01460907.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310824928|ref|YP_003957286.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
gi|115369315|gb|EAU68255.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309398000|gb|ADO75459.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
Length = 67
Score = 95.9 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G+ G+D+F H SA+ + G +L EGQ V +D +
Sbjct: 1 MANGTVKWFNDAKGFGFITQDGA---GEDLFCHHSAIQADGFRSLQEGQKVQFDVARGPK 57
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 58 G--LQAQNVRPV 67
>gi|302868803|ref|YP_003837440.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|315504727|ref|YP_004083614.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|302571662|gb|ADL47864.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
gi|315411346|gb|ADU09463.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
Length = 67
Score = 95.9 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ S+G L EGQ V ++ Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIQSSGYRELNEGQKVEFEVTQGQK 57
Query: 62 NGKYSAENLKL 72
A+N++
Sbjct: 58 G--PQADNVRP 66
>gi|192360604|ref|YP_001983030.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107]
gi|190686769|gb|ACE84447.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107]
Length = 125
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KGYGFI + E G+D+F H SA++ G L GQ V+++ + D
Sbjct: 41 IMPTGTVKWFNNAKGYGFILAD---EGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGD 97
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 98 KG--LHAINI 105
>gi|284990416|ref|YP_003408970.1| cold-shock DNA-binding domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063661|gb|ADB74599.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GF TP+G G DVF+H SA+ ++G +L EGQ +++D Q
Sbjct: 1 MPEGTVKWFNAEKGFGFATPDG---GGPDVFVHYSAIQTSGYRSLDEGQRISFDIEQGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQAANVNPL 67
>gi|46200113|ref|YP_005780.1| cold shock protein [Thermus thermophilus HB27]
gi|46197741|gb|AAS82153.1| cold shock protein [Thermus thermophilus HB27]
Length = 85
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E DVF+H +A+ + G L EG +VT+D
Sbjct: 13 MQKGRVKWFNAEKGYGFIERE----GDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRN 68
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 69 GKGPQAVNVTVVEPA 83
>gi|311743915|ref|ZP_07717721.1| CspA family cold shock transcriptional regulator [Aeromicrobium
marinum DSM 15272]
gi|311313045|gb|EFQ82956.1| CspA family cold shock transcriptional regulator [Aeromicrobium
marinum DSM 15272]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI P+G G+D+F H S++A++G +L E Q V +D Q
Sbjct: 1 MATGTVKWFNADKGFGFIAPDG---GGEDLFAHFSSIAASGFRSLDENQKVEFDVEQGQK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANIRPL 67
>gi|148272792|ref|YP_001222353.1| putative cold shock protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170781984|ref|YP_001710316.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus]
gi|147830722|emb|CAN01662.1| putative cold shock protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169156552|emb|CAQ01703.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF H SA+A+ G +L E Q V ++ Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAPDN---GTADVFAHYSAIATGGYKSLDENQKVEFEVAQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|91784982|ref|YP_560188.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|187925141|ref|YP_001896783.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|209517460|ref|ZP_03266301.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295677450|ref|YP_003605974.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|296157173|ref|ZP_06840009.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|307730770|ref|YP_003907994.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323527133|ref|YP_004229286.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|91688936|gb|ABE32136.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|187716335|gb|ACD17559.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|209502114|gb|EEA02129.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295437293|gb|ADG16463.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|295892509|gb|EFG72291.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|307585305|gb|ADN58703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323384135|gb|ADX56226.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 68
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ VT++ VQ
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVTFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|163853346|ref|YP_001641389.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218532203|ref|YP_002423019.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240140762|ref|YP_002965242.1| cold shock protein A [Methylobacterium extorquens AM1]
gi|254563272|ref|YP_003070367.1| cold shock protein A [Methylobacterium extorquens DM4]
gi|163664951|gb|ABY32318.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218524506|gb|ACK85091.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240010739|gb|ACS41965.1| cold shock protein A [Methylobacterium extorquens AM1]
gi|254270550|emb|CAX26553.1| cold shock protein A [Methylobacterium extorquens DM4]
Length = 69
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ V++D +
Sbjct: 1 MQTGTVKWFDEVKGYGFIQPDT---GGKDVFVHISAVQQAGLRGLVEGQKVSFDVENDRR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67
>gi|320333925|ref|YP_004170636.1| cold-shock DNA-binding domain-containing protein [Deinococcus
maricopensis DSM 21211]
gi|319755214|gb|ADV66971.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis
DSM 21211]
Length = 86
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI +GS DVF H SA+ +AG L EG V +D +
Sbjct: 1 MAVGRVKWFNAEKGFGFIEVDGS----PDVFAHFSAIKAAGFKKLNEGDEVEFDIEEGQR 56
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ + +
Sbjct: 57 GKGPQAANIVVTKAAPE 73
>gi|170751403|ref|YP_001757663.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170657925|gb|ACB26980.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL L EGQ V+Y+ +
Sbjct: 1 MSTGTVKWFNETKGYGFIQPDD---GGKDVFVHISAVERAGLRGLNEGQKVSYELETDRR 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKQSAGQLQ 67
>gi|110634259|ref|YP_674467.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
BNC1]
gi|110285243|gb|ABG63302.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 69
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L EGQ + ++ V++
Sbjct: 1 MTTGTVKWFNATKGFGFIQPDS---GQPDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPK 57
Query: 62 NGKYSAENLKLV 73
+GK +A NL+ V
Sbjct: 58 SGKSAAANLQAV 69
>gi|153006879|ref|YP_001381204.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. Fw109-5]
gi|152030452|gb|ABS28220.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT + G+DVF H +A+ + G L EGQ V +D +
Sbjct: 1 MSTGTVKWFNDAKGFGFITQDS---GGEDVFCHHTAINAQGFRTLAEGQKVEFDVTKGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANVRPL 67
>gi|88856605|ref|ZP_01131262.1| cold shock protein [marine actinobacterium PHSC20C1]
gi|88814259|gb|EAR24124.1| cold shock protein [marine actinobacterium PHSC20C1]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF H SA+A+ G +L E Q V +D Q
Sbjct: 1 MALGTVKWFNAEKGFGFIAPED---GSPDVFAHYSAIATNGYKSLDENQKVEFDITQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPI 67
>gi|309812766|ref|ZP_07706505.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185]
gi|308433283|gb|EFP57176.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF+H SA+ + G +L EGQ V ++ Q D
Sbjct: 1 MAQGTVKWFNAEKGFGFIEQDG---GGADVFVHFSAIQTNGYRSLDEGQRVEFEITQGDK 57
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 58 G--PQASNVT 65
>gi|27379097|ref|NP_770626.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27352247|dbj|BAC49251.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 69
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV AGL +L EGQ V++D V +
Sbjct: 1 MAMGTVKWFNTQKGYGFIQPDD---GQKDVFVHISAVERAGLSSLNEGQKVSFDIVADRR 57
Query: 62 NGKYSAENLKL 72
+GK SA+NL++
Sbjct: 58 SGKSSADNLRV 68
>gi|310825508|ref|YP_003957866.1| cold-shock DNA-binding domain-containing protein [Stigmatella
aurantiaca DW4/3-1]
gi|309398580|gb|ADO76039.1| Cold-shock DNA-binding domain protein [Stigmatella aurantiaca
DW4/3-1]
Length = 67
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT +G G+DVF H +A+ + G +LTEGQ V ++ +
Sbjct: 1 MATGVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPK 57
Query: 62 NGKYSAENLKLV 73
A+N+K +
Sbjct: 58 G--LQAQNVKPI 67
>gi|296390681|ref|ZP_06880156.1| cold-shock protein [Pseudomonas aeruginosa PAb1]
Length = 204
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D
Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192
Query: 62 NGKYSAENL 70
AE++
Sbjct: 193 G--LQAEDV 199
>gi|254245244|ref|ZP_04938566.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
gi|126198622|gb|EAZ62685.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
Length = 203
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D
Sbjct: 136 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 191
Query: 62 NGKYSAENL 70
AE++
Sbjct: 192 G--LQAEDV 198
>gi|152987217|ref|YP_001349896.1| cold-shock protein [Pseudomonas aeruginosa PA7]
gi|150962375|gb|ABR84400.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
Length = 203
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D
Sbjct: 136 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 191
Query: 62 NGKYSAENL 70
AE++
Sbjct: 192 G--LQAEDV 198
>gi|107100418|ref|ZP_01364336.1| hypothetical protein PaerPA_01001443 [Pseudomonas aeruginosa PACS2]
Length = 204
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D
Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192
Query: 62 NGKYSAENL 70
AE++
Sbjct: 193 G--LQAEDV 199
>gi|116048886|ref|YP_792313.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|313105848|ref|ZP_07792111.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
gi|115584107|gb|ABJ10122.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|310878613|gb|EFQ37207.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
Length = 204
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D
Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192
Query: 62 NGKYSAENL 70
AE++
Sbjct: 193 G--LQAEDV 199
>gi|186475334|ref|YP_001856804.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184191793|gb|ACC69758.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 68
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|253995969|ref|YP_003048033.1| cold-shock DNA-binding domain-containing protein [Methylotenera
mobilis JLW8]
gi|253982648|gb|ACT47506.1| cold-shock DNA-binding domain protein [Methylotenera mobilis
JLW8]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H SA+ +G +L EGQ V++D +
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGDDLFAHFSAIVESGYKSLKEGQRVSFDLTEGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|319408889|emb|CBI82546.1| cold shock protein [Bartonella schoenbuchensis R1]
Length = 70
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFI P DVF+H SAV +GL NL EGQ ++Y+ VQ+
Sbjct: 1 MSSTGTVKWFNTTKGFGFIQPND---GSADVFVHISAVERSGLSNLNEGQKISYEVVQDR 57
Query: 61 ANGKYSAENLKLV 73
+GK +A NL ++
Sbjct: 58 RSGKLAAGNLAVL 70
>gi|114797127|ref|YP_758844.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
gi|114737301|gb|ABI75426.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
Length = 69
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ G D+F+H SAV +GL L E Q ++Y+ +++
Sbjct: 1 MATGKVKWFNDQKGFGFIKPDD---GGADIFVHISAVERSGLKTLAENQSISYELYKDER 57
Query: 62 NGKYSAENLKLV 73
GK SA +LK++
Sbjct: 58 RGKTSAVDLKVL 69
>gi|297201608|ref|ZP_06919005.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|197711021|gb|EDY55055.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|311897871|dbj|BAJ30279.1| putative cold shock protein [Kitasatospora setae KM-6054]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQAVSFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVTPV 67
>gi|225075510|ref|ZP_03718709.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens
NRL30031/H210]
gi|269213456|ref|ZP_05982011.2| cold shock transcription regulator protein [Neisseria cinerea
ATCC 14685]
gi|284800098|ref|ZP_05985718.2| cold shock transcription regulator protein [Neisseria subflava
NJ9703]
gi|224953145|gb|EEG34354.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens
NRL30031/H210]
gi|269146157|gb|EEZ72575.1| cold shock transcription regulator protein [Neisseria cinerea
ATCC 14685]
gi|284795950|gb|EFC51297.1| cold shock transcription regulator protein [Neisseria subflava
NJ9703]
Length = 80
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFDVTTGP 69
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 70 KGK--QAANIQ 78
>gi|302553359|ref|ZP_07305701.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
gi|302559146|ref|ZP_07311488.1| cold shock transcription regulator protein [Streptomyces
griseoflavus Tu4000]
gi|302470977|gb|EFL34070.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
gi|302476764|gb|EFL39857.1| cold shock transcription regulator protein [Streptomyces
griseoflavus Tu4000]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQQVSFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVTPV 67
>gi|149928086|ref|ZP_01916333.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
gi|149823172|gb|EDM82409.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
Length = 73
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + D++F H SA+ ++G L EGQ VT++ V
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---QGSDELFAHFSAIQASGFRTLKEGQKVTFEVVDGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A+N+ ++ +S
Sbjct: 58 GK--QAQNISVMDATS 71
>gi|114764472|ref|ZP_01443697.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
gi|114543039|gb|EAU46058.1| cold shock family protein [Roseovarius sp. HTCC2601]
Length = 68
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG DVF+H SA+ +GL L + Q V+Y+ Q+
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPEG---GSKDVFVHISALERSGLTELKDNQKVSYEL-QSGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NL+L+
Sbjct: 57 DGRESAINLELL 68
>gi|281490768|ref|YP_003352748.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|281374537|gb|ADA64058.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147]
Length = 91
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFIT E G D+F H SA+ S G +L EGQ V +D +
Sbjct: 25 IMANGTVKWFNATKGFGFITSED----GQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQ 80
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 81 RG--PQAVNITK 90
>gi|284990904|ref|YP_003409458.1| cold-shock DNA-binding domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284064149|gb|ADB75087.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF H SA++ +G +L E Q V +D Q
Sbjct: 1 MTQGTVKWFNAEKGFGFIEQDG---GGPDVFCHFSAISGSGYRSLDEAQRVEFDVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENVRAI 67
>gi|55980144|ref|YP_143441.1| cold shock protein [Thermus thermophilus HB8]
gi|291463422|pdb|3A0J|A Chain A, Crystal Structure Of Cold Shock Protein 1 From Thermus
Thermophilus Hb8
gi|291463423|pdb|3A0J|B Chain B, Crystal Structure Of Cold Shock Protein 1 From Thermus
Thermophilus Hb8
gi|27374959|dbj|BAC53777.1| cold shock protein homolog [Thermus thermophilus]
gi|55771557|dbj|BAD69998.1| cold shock protein [Thermus thermophilus HB8]
Length = 73
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E DVF+H +A+ + G L EG +VT+D
Sbjct: 1 MQKGRVKWFNAEKGYGFIERE----GDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRN 56
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 57 GKGPQAVNVTVVEPA 71
>gi|21222688|ref|NP_628467.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|302559987|ref|ZP_07312329.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|8248794|emb|CAB93055.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|11933021|emb|CAC19350.1| cold-shock like protein [Streptomyces coelicolor]
gi|302477605|gb|EFL40698.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ ++L
Sbjct: 57 G--PQADMVRL 65
>gi|330469179|ref|YP_004406922.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328812150|gb|AEB46322.1| cold-shock DNA-binding domain protein [Verrucosispora maris
AB-18-032]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+AS+G LTEGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIASSGYRELTEGQKVEFDVTQGQK 57
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 58 G--PQADNVR 65
>gi|319936790|ref|ZP_08011202.1| cold-shock DNA-binding domain-containing protein [Coprobacillus
sp. 29_1]
gi|319808058|gb|EFW04630.1| cold-shock DNA-binding domain-containing protein [Coprobacillus
sp. 29_1]
Length = 66
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFIT + G D+F+H SA+A +G L EGQ V+++ + D
Sbjct: 1 MNTGKVKWFNSEKGFGFITVD----GGKDIFVHFSAIAGSGYKTLEEGQNVSFEITEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 G--PQASNVTVL 66
>gi|73538959|ref|YP_299326.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72122296|gb|AAZ64482.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 67
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITP+ G D+F H S + +G +L EG V +D Q
Sbjct: 1 MATGIVKWFNNEKGYGFITPDD---GGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQASNIRKL 67
>gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera
radiovictrix DSM 17093]
gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
17093]
Length = 79
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GFI + G DVF H SA+ +G +L EG V ++ Q
Sbjct: 1 MATGRVKWFSNEKGFGFIEQDD---GGADVFCHFSAITGSGYRSLNEGDEVEFEVEQGQK 57
Query: 62 NGKYSAENLKLVPKSS 77
A+N+ + +
Sbjct: 58 G--LQAKNVTVTNAAP 71
>gi|242063850|ref|XP_002453214.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
gi|241933045|gb|EES06190.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
Length = 251
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|226227592|ref|YP_002761698.1| cold shock protein [Gemmatimonas aurantiaca T-27]
gi|226090783|dbj|BAH39228.1| cold shock protein [Gemmatimonas aurantiaca T-27]
Length = 69
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFITP D F+H SA+ G +LTEG+ V +D VQ
Sbjct: 1 MRTTGTVKWFNDAKGFGFITPSD---GQKDCFVHHSAIQGNGFKSLTEGETVEFDIVQGQ 57
Query: 61 ANGKYSAENLK 71
+AEN+
Sbjct: 58 KG--PAAENVT 66
>gi|161869773|ref|YP_001598941.1| transcriptional regulator [Neisseria meningitidis 053442]
gi|304387853|ref|ZP_07370027.1| cold shock transcription regulator protein [Neisseria
meningitidis ATCC 13091]
gi|161595326|gb|ABX72986.1| transcriptional regulator [Neisseria meningitidis 053442]
gi|304338118|gb|EFM04254.1| cold shock transcription regulator protein [Neisseria
meningitidis ATCC 13091]
gi|325129992|gb|EGC52787.1| putative transcriptional regulator [Neisseria meningitidis
OX99.30304]
gi|325132021|gb|EGC54719.1| putative transcriptional regulator [Neisseria meningitidis M6190]
gi|325134026|gb|EGC56681.1| putative transcriptional regulator [Neisseria meningitidis
M13399]
gi|325135947|gb|EGC58557.1| putative transcriptional regulator [Neisseria meningitidis M0579]
gi|325137775|gb|EGC60350.1| putative transcriptional regulator [Neisseria meningitidis
ES14902]
gi|325140014|gb|EGC62543.1| putative transcriptional regulator [Neisseria meningitidis CU385]
gi|325142116|gb|EGC64542.1| putative transcriptional regulator [Neisseria meningitidis
961-5945]
gi|325144132|gb|EGC66439.1| putative transcriptional regulator [Neisseria meningitidis
M01-240013]
gi|325198041|gb|ADY93497.1| putative transcriptional regulator [Neisseria meningitidis G2136]
gi|325200482|gb|ADY95937.1| putative transcriptional regulator [Neisseria meningitidis
H44/76]
gi|325202374|gb|ADY97828.1| putative transcriptional regulator [Neisseria meningitidis
M01-240149]
gi|325203909|gb|ADY99362.1| putative transcriptional regulator [Neisseria meningitidis
M01-240355]
gi|325206328|gb|ADZ01781.1| putative transcriptional regulator [Neisseria meningitidis
M04-240196]
gi|325207874|gb|ADZ03326.1| putative transcriptional regulator [Neisseria meningitidis
NZ-05/33]
Length = 80
Score = 95.1 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGP 69
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 70 KGK--QAANIQ 78
>gi|134100407|ref|YP_001106068.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291007339|ref|ZP_06565312.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133913030|emb|CAM03143.1| cold-shock DNA-binding domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 67
Score = 95.1 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+G G DVF H SA+ + G L E Q V ++ Q
Sbjct: 1 MATGTVKWFNAEKGFGFITPDG---GGADVFAHYSAIDATGFRTLDENQRVEFEIAQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQAAQIRTI 67
>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans]
gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein
[Janthinobacterium sp. Marseille]
gi|329905635|ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
gi|133739526|emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas
arsenicoxydans]
gi|151283362|gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp.
Marseille]
gi|327547557|gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
Length = 67
Score = 95.1 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ G L EGQ V ++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|91776492|ref|YP_546248.1| cold-shock DNA-binding protein family protein [Methylobacillus
flagellatus KT]
gi|91710479|gb|ABE50407.1| cold-shock DNA-binding protein family [Methylobacillus
flagellatus KT]
Length = 67
Score = 95.1 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H SA+ AG +L EGQ V++D +
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGDDLFAHFSAIVEAGYKSLKEGQRVSFDVTEGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|86139243|ref|ZP_01057813.1| cold shock family protein [Roseobacter sp. MED193]
gi|85824087|gb|EAQ44292.1| cold shock family protein [Roseobacter sp. MED193]
Length = 120
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D +
Sbjct: 53 MATGTVKWFNSTKGFGFIAPDG---GTKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 108
Query: 62 NGKYSAENLKLV 73
+G+ +A NL LV
Sbjct: 109 DGREAAVNLALV 120
>gi|297744636|emb|CBI37898.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ GDD+F+H+S++ S G +L EG+ V + V++ +G
Sbjct: 5 TGTVKWFNDQKGFGFITPDD---GGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 61 RTKAVDVT 68
>gi|46201253|ref|ZP_00055476.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
gi|83310692|ref|YP_420956.1| cold shock protein [Magnetospirillum magneticum AMB-1]
gi|82945533|dbj|BAE50397.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
Length = 69
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE D+F+H SAV AG+ NL EGQ ++++ ++
Sbjct: 1 MPNGTVKWFNATKGYGFIQPED---GSADIFVHISAVERAGIGNLKEGQKLSFETERDPR 57
Query: 62 NGKYSAENLKLV 73
GK SA NLK +
Sbjct: 58 KGKSSAVNLKAL 69
>gi|254294491|ref|YP_003060514.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
gi|254043022|gb|ACT59817.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
Length = 69
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H +AV AGL L EGQ V ++ V +
Sbjct: 1 MTTGTVKWFNATKGYGFIAPDD---GGADVFVHVTAVQQAGLAGLDEGQKVEFELVTDPK 57
Query: 62 NGKYSAENLK 71
GK SA +LK
Sbjct: 58 RGKTSAGDLK 67
>gi|253998300|ref|YP_003050363.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. SIP3-4]
gi|255599837|ref|XP_002537322.1| cold shock domain containing proteins, putative [Ricinus
communis]
gi|313200374|ref|YP_004039032.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. MP688]
gi|223516741|gb|EEF25061.1| cold shock domain containing proteins, putative [Ricinus
communis]
gi|253984979|gb|ACT49836.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
gi|312439690|gb|ADQ83796.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H SA+ +G +L EGQ V++D +
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGDDLFAHFSAIVESGYKSLKEGQRVSFDVTEGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|58581493|ref|YP_200509.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58426087|gb|AAW75124.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 75
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+PE DVF H SA+ S G +L EGQ V+YD Q
Sbjct: 8 MPNGTVKWFNDAKGFGFISPED---GSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 64
Query: 62 NGKYSAENLKLVP 74
A N+ V
Sbjct: 65 G--AQASNITPVE 75
>gi|23012538|ref|ZP_00052598.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 69
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ GS+KW+N KG+GFI P+ G DVF+H SAV AGL L +GQ V+++ ++
Sbjct: 1 MPNGSVKWFNSTKGFGFIAPDN---GGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPR 57
Query: 62 NGKYSAENLKLV 73
GK SA NLK++
Sbjct: 58 KGKTSAVNLKVL 69
>gi|326406197|gb|ADZ63268.1| cold shock protein beta-ribbon [Lactococcus lactis subsp. lactis
CV56]
Length = 91
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFIT E G D+F H S++ S G +L EGQ V +D +
Sbjct: 25 IMANGTVKWFNATKGFGFITSED----GQDLFAHFSSIQSDGFKSLDEGQKVEFDVEEGQ 80
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 81 RG--PQAVNITK 90
>gi|300310729|ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum
seropedicae SmR1]
gi|300073514|gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae
SmR1]
Length = 68
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|108763346|ref|YP_634172.1| cold-shock protein CspE [Myxococcus xanthus DK 1622]
gi|4193398|gb|AAD10037.1| CspE [Myxococcus xanthus]
gi|108467226|gb|ABF92411.1| cold-shock protein CspE [Myxococcus xanthus DK 1622]
Length = 68
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V ++ +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLAEGQKVEFEVTRGPK 57
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 58 G--LQAQNVR 65
>gi|163850319|ref|YP_001638362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218528876|ref|YP_002419692.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240137390|ref|YP_002961861.1| major cold shock protein [Methylobacterium extorquens AM1]
gi|254559570|ref|YP_003066665.1| major cold shock protein [Methylobacterium extorquens DM4]
gi|163661924|gb|ABY29291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218521179|gb|ACK81764.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240007358|gb|ACS38584.1| major cold shock protein [Methylobacterium extorquens AM1]
gi|254266848|emb|CAX22647.1| major cold shock protein [Methylobacterium extorquens DM4]
Length = 69
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ V+Y+ + +
Sbjct: 1 MDTGTVKWFNETKGYGFIQPDD---GGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKR 57
Query: 62 NGKYSAENLKLV 73
+GK +A NL+ V
Sbjct: 58 SGKDAAGNLQAV 69
>gi|309775820|ref|ZP_07670814.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308916358|gb|EFP62104.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 66
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT + G D+F+H S++ S G L EGQ V +D V++D
Sbjct: 1 MSTGKVKWFNAEKGYGFITSDD----GKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESDR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--QQAANVTV 65
>gi|114332012|ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
eutropha C91]
gi|114309026|gb|ABI60269.1| cold-shock DNA-binding protein family [Nitrosomonas eutropha C91]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ +G L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMSGFKTLKEGQKVSFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|86748914|ref|YP_485410.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris HaA2]
gi|91977978|ref|YP_570637.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
BisB5]
gi|148258227|ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|192292560|ref|YP_001993165.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
gi|86571942|gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
gi|91684434|gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
gi|146410400|gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
gi|192286309|gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 70
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V +
Sbjct: 1 MSMGTVKWFNATKGYGFIQPDD---GGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|326332603|ref|ZP_08198871.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
gi|325949604|gb|EGD41676.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI +G G+DVF+H SA+ S G +L E Q V +D Q
Sbjct: 1 MAQGTVKWFNADKGFGFIAQDG---GGEDVFVHFSAIQSNGYKSLDENQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+++
Sbjct: 58 G--PQAENVRV 66
>gi|331004967|ref|ZP_08328377.1| Cold shock protein [gamma proteobacterium IMCC1989]
gi|330421209|gb|EGG95465.1| Cold shock protein [gamma proteobacterium IMCC1989]
Length = 98
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G+D+F H S++ G L GQ V++D + D
Sbjct: 1 MATGTVKWFNNAKGYGFILPDD---GGEDLFAHYSSIEMDGYKTLKAGQPVSFDTIGGDK 57
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 58 G--LHATNIT 65
>gi|290958273|ref|YP_003489455.1| cold shock protein [Streptomyces scabiei 87.22]
gi|260647799|emb|CBG70904.1| cold shock protein [Streptomyces scabiei 87.22]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQQVSFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVTPV 67
>gi|300023882|ref|YP_003756493.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525703|gb|ADJ24172.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 69
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G G+DVF+H SAV AGL L EGQ ++++ V +
Sbjct: 1 MQTGTVKWFNSQKGFGFIQPDG---GGNDVFVHISAVERAGLNGLNEGQKISFEIVADRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA+NL+ V
Sbjct: 58 SGKSSADNLRPV 69
>gi|255065177|ref|ZP_05317032.1| cold shock transcription regulator protein [Neisseria sicca ATCC
29256]
gi|269214299|ref|ZP_06158484.1| cold shock transcription regulator protein [Neisseria lactamica
ATCC 23970]
gi|288575418|ref|ZP_05976942.2| cold shock transcription regulator protein [Neisseria mucosa ATCC
25996]
gi|297250909|ref|ZP_06865276.2| cold shock transcription regulator protein [Neisseria
polysaccharea ATCC 43768]
gi|255050598|gb|EET46062.1| cold shock transcription regulator protein [Neisseria sicca ATCC
29256]
gi|269210156|gb|EEZ76611.1| cold shock transcription regulator protein [Neisseria lactamica
ATCC 23970]
gi|288568095|gb|EFC89655.1| cold shock transcription regulator protein [Neisseria mucosa ATCC
25996]
gi|296837712|gb|EFH21650.1| cold shock transcription regulator protein [Neisseria
polysaccharea ATCC 43768]
Length = 80
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGP 69
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 70 KGK--QAANIQ 78
>gi|74316697|ref|YP_314437.1| cold-shock DNA-binding protein family protein [Thiobacillus
denitrificans ATCC 25259]
gi|74056192|gb|AAZ96632.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
denitrificans ATCC 25259]
Length = 68
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ + G +L E Q V+++
Sbjct: 1 METGTVKWFNDAKGFGFITPDN---GGEDLFAHFSAINANGFKSLQENQRVSFEVTTGPK 57
Query: 62 NGKYSAENLKLVP 74
A N+++V
Sbjct: 58 GK--QASNIQVVS 68
>gi|291295051|ref|YP_003506449.1| cold-shock DNA-binding domain-containing protein [Meiothermus
ruber DSM 1279]
gi|290470010|gb|ADD27429.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM
1279]
Length = 75
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E DVF+H SA+ S G L EG +VT++
Sbjct: 1 MQKGKVKWFNAEKGYGFIQREEGE---PDVFVHYSAIQSRGFRTLNEGDVVTFEIEPGKN 57
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 58 GKGPQAANVSVVEPA 72
>gi|163792428|ref|ZP_02186405.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
gi|159182133|gb|EDP66642.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
Length = 68
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE DVF+H SAV AG+ +L EGQ V++D +
Sbjct: 1 MATGTVKWFNATKGYGFIEPED---GSADVFVHISAVERAGIASLNEGQKVSFDV-ERGR 56
Query: 62 NGKYSAENLKLV 73
NGKY+A +L+ +
Sbjct: 57 NGKYAATDLRPL 68
>gi|260597282|ref|YP_003209853.1| Cold shock-like protein cspD [Cronobacter turicensis z3032]
gi|260216459|emb|CBA29590.1| Cold shock-like protein cspD [Cronobacter turicensis z3032]
Length = 99
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 24 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 80
Query: 62 NGKYSAENLKLVPKS 76
A + +
Sbjct: 81 GN--HASVIVPLEAE 93
>gi|304311205|ref|YP_003810803.1| Cold-shock protein CspD [gamma proteobacterium HdN1]
gi|301796938|emb|CBL45151.1| Cold-shock protein CspD [gamma proteobacterium HdN1]
Length = 97
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI P+G GDD+F+H S + G +L GQ+VTY+ +
Sbjct: 1 MATGKVKWFNNAKGYGFIRPDG---EGDDLFVHYSYIHMDGYKSLKAGQVVTYEIREAPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ LV + +
Sbjct: 58 G--LHAVNIGLVEHAHD 72
>gi|226310536|ref|YP_002770430.1| cold shock protein [Brevibacillus brevis NBRC 100599]
gi|226093484|dbj|BAH41926.1| cold shock protein [Brevibacillus brevis NBRC 100599]
Length = 66
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V ++ V+ +
Sbjct: 1 MQTGTVKWFNAEKGYGFIAVE----GGNDVFVHFSAIQGDGFKTLEEGQRVEFNVVEGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVTKL 66
>gi|115376123|ref|ZP_01463367.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|310824812|ref|YP_003957170.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1]
gi|115366846|gb|EAU65837.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
gi|309397884|gb|ADO75343.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+T +G G+DVF H SA+ G L EGQ V++D +
Sbjct: 1 MATGTVKWFNDAKGFGFLTQDG---GGEDVFCHHSAINMDGFRTLAEGQKVSFDVTRGPK 57
Query: 62 NGKYSAENLKL 72
A+N++
Sbjct: 58 G--LQAQNVRP 66
>gi|83593249|ref|YP_427001.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|83576163|gb|ABC22714.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
Length = 68
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H +A+ AG+ +L EGQ VTYD +
Sbjct: 1 MSTGTVKWFNTTKGFGFIAPDN---GGADAFVHITALERAGIHSLNEGQRVTYDL-EMGR 56
Query: 62 NGKYSAENLKL 72
GK +A N++L
Sbjct: 57 TGKMAAINIRL 67
>gi|297195982|ref|ZP_06913380.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486]
gi|197718880|gb|EDY62788.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q V +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVEFDITQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ V
Sbjct: 58 G--PQAENVRPV 67
>gi|325981354|ref|YP_004293756.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
sp. AL212]
gi|325530873|gb|ADZ25594.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212]
Length = 67
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ +G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMSGFKTLKEGQKVSFDVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|94985111|ref|YP_604475.1| cold-shock DNA-binding domain-containing protein [Deinococcus
geothermalis DSM 11300]
gi|94555392|gb|ABF45306.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis
DSM 11300]
Length = 89
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI DVF+H SA+ S+G L EG V ++
Sbjct: 1 MAQGRVKWFNVEKGYGFIE----HPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQG 56
Query: 62 NGKYSAENLKLVPKSS 77
N A+N+ + +
Sbjct: 57 NKGPQAKNVVVTNAAP 72
>gi|238015158|gb|ACR38614.1| unknown [Zea mays]
Length = 240
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|224033945|gb|ACN36048.1| unknown [Zea mays]
Length = 249
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|320449421|ref|YP_004201517.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
gi|320149590|gb|ADW20968.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
Length = 73
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E DVF+H SA+ + G L EG +VT+D
Sbjct: 1 MQKGRVKWFNAEKGYGFIERE----GDTDVFVHFSAINAKGFRTLNEGDIVTFDVEPGKN 56
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 57 GKGPQAVNVTVVEPA 71
>gi|225867733|ref|YP_002743681.1| cold shock protein [Streptococcus equi subsp. zooepidemicus]
gi|225869669|ref|YP_002745616.1| cold shock protein [Streptococcus equi subsp. equi 4047]
gi|225699073|emb|CAW92213.1| cold shock protein [Streptococcus equi subsp. equi 4047]
gi|225701009|emb|CAW97768.1| cold shock protein [Streptococcus equi subsp. zooepidemicus]
Length = 69
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ S G +L EGQ VT+D
Sbjct: 3 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQSDGFRSLDEGQRVTFDVEDGQR 58
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 59 G--PQAVNITKLS 69
>gi|146338131|ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
gi|146190937|emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
Length = 70
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V +
Sbjct: 1 MSMGTVKWFNATKGYGFIQPDD---GGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|226228145|ref|YP_002762251.1| cold shock protein [Gemmatimonas aurantiaca T-27]
gi|226091336|dbj|BAH39781.1| cold shock protein [Gemmatimonas aurantiaca T-27]
Length = 70
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N KG+GFITP+ D F+H SA+ G L EG+ V +D VQ
Sbjct: 1 MRTTGKVKWFNDAKGFGFITPDD---GSKDCFVHHSAIQGGGFRTLAEGERVEFDIVQGQ 57
Query: 61 ANGKYSAENLKLV 73
+AE + V
Sbjct: 58 KG--PAAEQVTKV 68
>gi|307328611|ref|ZP_07607784.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306885723|gb|EFN16736.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQAVTFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVSPV 67
>gi|241896392|ref|ZP_04783688.1| CspA family cold shock transcriptional regulator [Weissella
paramesenteroides ATCC 33313]
gi|241870372|gb|EER74123.1| CspA family cold shock transcriptional regulator [Weissella
paramesenteroides ATCC 33313]
Length = 75
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFI+ E SGDDVF+H SA+ + G +L EGQ V+++ Q D
Sbjct: 10 MEQGTVKWFNADKGYGFISRE----SGDDVFVHFSAIQTDGFKSLEEGQAVSFEVQQGDR 65
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 66 G--LQAANVSKL 75
>gi|195977285|ref|YP_002122529.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195973990|gb|ACG61516.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ S G +L EGQ VT+D
Sbjct: 1 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQSDGFRSLDEGQRVTFDVEDGQR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--PQAVNITKLS 67
>gi|92116417|ref|YP_576146.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91799311|gb|ABE61686.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 69
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G G D+F+H SAV AGL +L +GQ V+++ +
Sbjct: 1 MATGTVKWFNATKGFGFIQPDG---GGQDIFVHISAVERAGLSSLNDGQKVSFEAKTDSM 57
Query: 62 NGKYSAENLKL 72
GK SAENL++
Sbjct: 58 RGKTSAENLRV 68
>gi|332670111|ref|YP_004453119.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332339149|gb|AEE45732.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
484]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI +G G DVF+H SA+ + G +L EGQ V ++ Q D
Sbjct: 1 MAQGAVKWFNAEKGYGFIAQDG---GGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGDK 57
Query: 62 NGKYSAENLKLV 73
AE+++ +
Sbjct: 58 G--PQAEHVRPL 67
>gi|302335495|ref|YP_003800702.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084]
gi|301319335|gb|ADK67822.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V +D
Sbjct: 1 MAQGTVKWFNPDKGYGFISRED----GDDLFVHYSEIQMDGFKTLDEGQAVEFDITTGQ- 55
Query: 62 NGKYSAENLKL 72
NGK A N++
Sbjct: 56 NGKLQASNVRK 66
>gi|68164476|gb|AAY87205.1| predicted cold shock family protein [uncultured bacterium
BAC17H8]
Length = 83
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI P+ E G+DVF+H +AV ++GL L EGQ V+Y+ +
Sbjct: 15 MAQGTVKWFNTQKGYGFINPD---EDGNDVFVHITAVQNSGLTGLNEGQRVSYELAE-QR 70
Query: 62 NGKYSAENLKLVP 74
NG+++A +L +V
Sbjct: 71 NGRFAAVDLSIVD 83
>gi|23011600|ref|ZP_00051912.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 69
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ V+Y+ + +
Sbjct: 1 MDTGTVKWFNETKGYGFIQPDN---GGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKR 57
Query: 62 NGKYSAENLKLV 73
+GK +A NL+ V
Sbjct: 58 SGKDAAGNLQAV 69
>gi|332671932|ref|YP_004454940.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340970|gb|AEE47553.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
484]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ G DVF H SA+AS+G +L E Q V +D Q
Sbjct: 1 MAIGTVKWFNAEKGFGFIAPDD---GGPDVFAHYSAIASSGYRSLEENQKVQFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 G--PQASNITP 66
>gi|290959448|ref|YP_003490630.1| cold shock protein [Streptomyces scabiei 87.22]
gi|260648974|emb|CBG72088.1| cold shock protein [Streptomyces scabiei 87.22]
Length = 68
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ ++L
Sbjct: 57 G--PQADMVRL 65
>gi|302543455|ref|ZP_07295797.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461073|gb|EFL24166.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQAVTFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVSAV 67
>gi|291303552|ref|YP_003514830.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290572772|gb|ADD45737.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 66
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N +KGYGF+ + G+DVF+H SA+ + G +L +GQ V +D Q
Sbjct: 1 MAQGSVKWFNAEKGYGFLAVD----GGEDVFVHFSAIQADGYRSLEDGQRVEFDIAQGQK 56
Query: 62 NGKYSAENLKLV 73
AEN+++V
Sbjct: 57 G--PQAENVRIV 66
>gi|226357786|ref|YP_002787526.1| cold shock protein [Deinococcus deserti VCD115]
gi|226320029|gb|ACO48022.1| putative cold shock protein [Deinococcus deserti VCD115]
Length = 87
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI T G DVF H SA++ +G L EG V ++ +
Sbjct: 1 MPAGKVKWFNAEKGFGFIE----TPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQR 56
Query: 62 NGKYSAENLKLVPKSS 77
A+N+ + +
Sbjct: 57 GKGPQAKNIVVTKAAP 72
>gi|258542856|ref|YP_003188289.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|256633934|dbj|BAH99909.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|256636993|dbj|BAI02962.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-03]
gi|256640046|dbj|BAI06008.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-07]
gi|256643102|dbj|BAI09057.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-22]
gi|256646157|dbj|BAI12105.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-26]
gi|256649210|dbj|BAI15151.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-32]
gi|256652197|dbj|BAI18131.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655254|dbj|BAI21181.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-12]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H +AV +AGL L +GQ V++D V+
Sbjct: 1 MPTGTVKWFNATKGYGFIAPDD---GGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE-- 55
Query: 62 NGKYSAENLKL 72
GK +A NLK+
Sbjct: 56 RGKQAATNLKV 66
>gi|254388506|ref|ZP_05003740.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|294814077|ref|ZP_06772720.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|326442478|ref|ZP_08217212.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|197702227|gb|EDY48039.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|294326676|gb|EFG08319.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
Length = 67
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +KL
Sbjct: 57 G--PQADMVKL 65
>gi|269125062|ref|YP_003298432.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310020|gb|ACY96394.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
DSM 43183]
Length = 66
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L +GQ V ++ ++
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGRDVFVHYSAILMDGYRTLEQGQRVEFEIAHSER 56
Query: 62 NGKYSAENLKLV 73
AE+++ +
Sbjct: 57 G--PQAESVRTL 66
>gi|297200544|ref|ZP_06917941.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|197709669|gb|EDY53703.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
Length = 68
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ ++L
Sbjct: 57 G--PQADMVRL 65
>gi|226358070|ref|YP_002787809.1| Cold shock protein [Deinococcus deserti VCD115]
gi|226319713|gb|ACO47707.1| putative Cold shock protein [Deinococcus deserti VCD115]
Length = 87
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI T G DVF H SA++ +G L EG V ++ +
Sbjct: 1 MPAGKVKWFNAEKGFGFIE----TPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQR 56
Query: 62 NGKYSAENLKLVPKSS 77
A+N+ + +
Sbjct: 57 GKGPQAKNIVVTRAAP 72
>gi|86159596|ref|YP_466381.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776107|gb|ABC82944.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ + G ++ EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSVAEGQKVEFDVAKGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANVRPL 67
>gi|291301635|ref|YP_003512913.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290570855|gb|ADD43820.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G+ DVF+H SA+ + G L+EGQ V ++ Q
Sbjct: 1 MANGTVKWFNAEKGFGFIERDGNE---PDVFVHFSAIQTQGYRELSEGQKVEFEVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN+K +
Sbjct: 58 G--PQAENVKPL 67
>gi|229819166|ref|YP_002880692.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
12333]
gi|229565079|gb|ACQ78930.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
12333]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF H SA+ + G +L E Q V +D Q
Sbjct: 1 MTIGTVKWFNAEKGFGFIAPED---GSADVFAHYSAIVADGFRSLEENQRVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQASNIRPL 67
>gi|260904248|ref|ZP_05912570.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT EG + DVF+H SA+ G L EGQ V ++ +
Sbjct: 1 MAQGTVKWFNAEKGYGFITLEG---NNQDVFVHWSAIQMDGYRALEEGQQVEFEVGEGQK 57
Query: 62 NGKYSAENLKLV 73
AE++ L+
Sbjct: 58 G--PQAESVTLL 67
>gi|82703364|ref|YP_412930.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
multiformis ATCC 25196]
gi|82411429|gb|ABB75538.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
ATCC 25196]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ +G L EGQ VT++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|152964189|ref|YP_001359973.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
SRS30216]
gi|151358706|gb|ABS01709.1| putative cold-shock DNA-binding domain protein [Kineococcus
radiotolerans SRS30216]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI +G G DVF+H SA+ G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIEQDG---GGPDVFVHYSAIGGNGYRSLEENQRVEFEVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AE+++ +
Sbjct: 58 G--PQAEDVRAL 67
>gi|329940593|ref|ZP_08289874.1| cold shock protein [Streptomyces griseoaurantiacus M045]
gi|329300654|gb|EGG44551.1| cold shock protein [Streptomyces griseoaurantiacus M045]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN+ LV
Sbjct: 58 G--PQAENINLV 67
>gi|308178448|ref|YP_003917854.1| cold shock protein [Arthrobacter arilaitensis Re117]
gi|307745911|emb|CBT76883.1| cold shock protein [Arthrobacter arilaitensis Re117]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI P+ DVF H SA+ + G L EGQ V ++ V+
Sbjct: 1 MATGIVKWFNAEKGFGFIAPDS---GDPDVFAHFSAIQTQGFRTLDEGQKVEFEVVEGPK 57
Query: 62 NGKYSAENLKLV 73
A +++ +
Sbjct: 58 G--LQAADIRAL 67
>gi|239929627|ref|ZP_04686580.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291437949|ref|ZP_06577339.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|294630786|ref|ZP_06709346.1| cold shock transcription regulator protein [Streptomyces sp. e14]
gi|291340844|gb|EFE67800.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|292834119|gb|EFF92468.1| cold shock transcription regulator protein [Streptomyces sp. e14]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINATGFRSLEENQQVSFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVTPV 67
>gi|294811207|ref|ZP_06769850.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|294323806|gb|EFG05449.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
Length = 92
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 26 MAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQK 82
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 83 G--PQAENI 89
>gi|238060156|ref|ZP_04604865.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|237881967|gb|EEP70795.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+A++G L EGQ V ++ Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIATSGYRELNEGQKVEFEVTQGQK 57
Query: 62 NGKYSAENLKL 72
A+N++
Sbjct: 58 G--PQADNVRP 66
>gi|92114621|ref|YP_574549.1| cold-shock DNA-binding protein family protein [Chromohalobacter
salexigens DSM 3043]
gi|91797711|gb|ABE59850.1| cold-shock DNA-binding protein family [Chromohalobacter
salexigens DSM 3043]
Length = 68
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI+P+ GDD+F H S + + G +L +GQ V+++ Q
Sbjct: 1 MATGTVKWFNDTKGYGFISPDD---GGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKK 57
Query: 62 NGKYSAENLKLVP 74
A N+K+V
Sbjct: 58 G--LQASNIKVVD 68
>gi|134099205|ref|YP_001104866.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291009987|ref|ZP_06567960.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133911828|emb|CAM01941.1| cold-shock DNA-binding domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ G DVF+H SA+ S G +L E Q VTYD Q
Sbjct: 1 MTQGTVKWFNSEKGFGFIAPD---AGGPDVFVHYSAIDSTGFRSLEENQQVTYDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEVVRAL 67
>gi|21222890|ref|NP_628669.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|256785998|ref|ZP_05524429.1| cold shock protein [Streptomyces lividans TK24]
gi|289769893|ref|ZP_06529271.1| cold shock protein [Streptomyces lividans TK24]
gi|7242722|emb|CAB77296.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|289700092|gb|EFD67521.1| cold shock protein [Streptomyces lividans TK24]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINAQGFRSLEENQQVSFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENVTPV 67
>gi|303257728|ref|ZP_07343740.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
gi|303257776|ref|ZP_07343787.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
gi|331000987|ref|ZP_08324623.1| putative cold shock domain protein CspD [Parasutterella
excrementihominis YIT 11859]
gi|302859458|gb|EFL82538.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
gi|302859698|gb|EFL82777.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
gi|329569762|gb|EGG51526.1| putative cold shock domain protein CspD [Parasutterella
excrementihominis YIT 11859]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFITP+ G+D+F H SA+ G L +GQ VT+D + +
Sbjct: 1 MATGTVKWFNDAKGYGFITPDD---GGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGEK 57
Query: 62 NGKYSAENLKL 72
A+N+K
Sbjct: 58 GK--QADNIKP 66
>gi|30249291|ref|NP_841361.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
europaea ATCC 19718]
gi|30180610|emb|CAD85223.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ G L EGQ V++D Q
Sbjct: 1 MTTGTVKWFNDAKGFGFITPDD---GSEDLFAHFSAINMNGFKTLREGQKVSFDVTQGQK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|326330338|ref|ZP_08196648.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
gi|325951875|gb|EGD43905.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
Length = 67
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI + GDDVF+H SA+ + G L E Q V +D Q
Sbjct: 1 MTQGTVKWFNGDKGFGFIAQDN---GGDDVFVHFSAIQTQGYKTLDENQRVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ V
Sbjct: 58 G--PQAENVRPV 67
>gi|310823940|ref|YP_003956298.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
gi|309397012|gb|ADO74471.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPK 57
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 58 G--LQAQNVR 65
>gi|313890412|ref|ZP_07824043.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026]
gi|332523883|ref|ZP_08400135.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova
176]
gi|313121255|gb|EFR44363.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026]
gi|332315147|gb|EGJ28132.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova
176]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ S G L EGQ V +D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISTE----EGQDVFAHFSAIQSDGFKTLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--PQAVNITKLS 67
>gi|296129427|ref|YP_003636677.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
gi|296021242|gb|ADG74478.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI + G DVF+H SA+ + G +L EGQ V ++ Q
Sbjct: 1 MAQGAVKWFNAEKGFGFIAQDD---GGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGQK 57
Query: 62 NGKYSAENLKLV 73
AE+++ +
Sbjct: 58 G--PQAEHVRPL 67
>gi|108759696|ref|YP_631543.1| CspA family cold-shock protein [Myxococcus xanthus DK 1622]
gi|108463576|gb|ABF88761.1| cold-shock protein, CspA family [Myxococcus xanthus DK 1622]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G G+D+F H +A+ + G L EGQ V +D +
Sbjct: 1 MATGTVKWFNDAKGFGFIMQDG---GGEDLFCHHTAIQTQGFRTLQEGQKVEFDVARGPK 57
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 58 G--LQAQNVRPV 67
>gi|84495365|ref|ZP_00994484.1| cold shock protein [Janibacter sp. HTCC2649]
gi|84384858|gb|EAQ00738.1| cold shock protein [Janibacter sp. HTCC2649]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIDTQGYRSLDENQQVEFEVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEQVRPL 67
>gi|188583612|ref|YP_001927057.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
gi|179347110|gb|ACB82522.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 69
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ VT+D +
Sbjct: 1 MNTGTVKWFDEIKGYGFIQPDT---GGKDVFVHISAVQQAGLRGLVEGQKVTFDVENDRR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67
>gi|17549274|ref|NP_522614.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|83749154|ref|ZP_00946157.1| Cold shock protein [Ralstonia solanacearum UW551]
gi|300694069|ref|YP_003750042.1| cold shock-like protein [Ralstonia solanacearum PSI07]
gi|17431526|emb|CAD18204.1| probable cold shock activator transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|83724150|gb|EAP71325.1| Cold shock protein [Ralstonia solanacearum UW551]
gi|299069468|emb|CBJ40735.1| Cold shock protein [Ralstonia solanacearum CMR15]
gi|299076106|emb|CBJ35417.1| Cold shock-like protein [Ralstonia solanacearum PSI07]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|295837165|ref|ZP_06824098.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|302521137|ref|ZP_07273479.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
gi|318058035|ref|ZP_07976758.1| cold shock protein [Streptomyces sp. SA3_actG]
gi|318079486|ref|ZP_07986818.1| cold shock protein [Streptomyces sp. SA3_actF]
gi|295826381|gb|EFG64808.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|302430032|gb|EFL01848.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 58 G--PQAENVSAL 67
>gi|217977958|ref|YP_002362105.1| cold-shock DNA-binding domain protein [Methylocella silvestris
BL2]
gi|217503334|gb|ACK50743.1| cold-shock DNA-binding domain protein [Methylocella silvestris
BL2]
Length = 69
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NPDKGYGFI P+ G DVF+H SAV +GL +L EGQ + Y+ + +
Sbjct: 1 MTTGTVKWFNPDKGYGFIQPDD---GGKDVFVHISAVEQSGLRHLQEGQKINYEVIADKR 57
Query: 62 NGKYSAENLK 71
GK SA NL+
Sbjct: 58 TGKSSAGNLR 67
>gi|163850615|ref|YP_001638658.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218529339|ref|YP_002420155.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240137664|ref|YP_002962135.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
AM1]
gi|254560234|ref|YP_003067329.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
DM4]
gi|163662220|gb|ABY29587.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218521642|gb|ACK82227.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240007632|gb|ACS38858.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
AM1]
gi|254267512|emb|CAX23354.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
DM4]
Length = 69
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EGQ VTY+ +
Sbjct: 1 MATGTVKWFNETKGYGFIQPDN---GGKDVFVHISAVERAGLRDLAEGQKVTYEVEIDRK 57
Query: 62 NGKYSAENLKL 72
+GK SA L++
Sbjct: 58 SGKESAGQLQV 68
>gi|33593717|ref|NP_881361.1| putative cold-shock protein [Bordetella pertussis Tohama I]
gi|33597156|ref|NP_884799.1| putative cold-shock protein [Bordetella parapertussis 12822]
gi|33601000|ref|NP_888560.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I]
gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis]
gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS]
Length = 81
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V+++ +Q
Sbjct: 16 ATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQGPKG 72
Query: 63 GKYSAENLK 71
A N+
Sbjct: 73 K--QALNIT 79
>gi|116494185|ref|YP_805919.1| cold shock protein [Lactobacillus casei ATCC 334]
gi|191637512|ref|YP_001986678.1| Cold shock protein A [Lactobacillus casei BL23]
gi|199597005|ref|ZP_03210438.1| Cold shock protein [Lactobacillus rhamnosus HN001]
gi|227534311|ref|ZP_03964360.1| CspA family cold shock transcriptional regulator [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|229553636|ref|ZP_04442361.1| CspA family cold shock transcriptional regulator [Lactobacillus
rhamnosus LMS2-1]
gi|239629560|ref|ZP_04672591.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|258507603|ref|YP_003170354.1| cold shock protein [Lactobacillus rhamnosus GG]
gi|258538778|ref|YP_003173277.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
gi|301065674|ref|YP_003787697.1| cold shock protein [Lactobacillus casei str. Zhang]
gi|40644037|emb|CAD92346.1| cold shock protein A [Lactobacillus casei]
gi|116104335|gb|ABJ69477.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
334]
gi|190711814|emb|CAQ65820.1| Cold shock protein A [Lactobacillus casei BL23]
gi|199592138|gb|EDZ00212.1| Cold shock protein [Lactobacillus rhamnosus HN001]
gi|205270982|emb|CAP07854.1| cold-shock protein [Lactobacillus casei BL23]
gi|227188035|gb|EEI68102.1| CspA family cold shock transcriptional regulator [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|229313014|gb|EEN78987.1| CspA family cold shock transcriptional regulator [Lactobacillus
rhamnosus LMS2-1]
gi|239528246|gb|EEQ67247.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|257147530|emb|CAR86503.1| Cold shock protein [Lactobacillus rhamnosus GG]
gi|257150454|emb|CAR89426.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
gi|259648959|dbj|BAI41121.1| cold shock protein [Lactobacillus rhamnosus GG]
gi|300438081|gb|ADK17847.1| Cold shock protein [Lactobacillus casei str. Zhang]
gi|327381559|gb|AEA53035.1| Cold-shock domain family protein [Lactobacillus casei LC2W]
gi|327384722|gb|AEA56196.1| Cold-shock domain family protein [Lactobacillus casei BD-II]
gi|328476231|gb|EGF46922.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462]
Length = 66
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT E G DVF+H SA+ G +L EGQ V+YD Q+D
Sbjct: 1 MQKGTVKWFNADKGYGFITGED----GQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|187926455|ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|241665942|ref|YP_002984301.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|309778741|ref|ZP_07673514.1| cold shock transcription regulator protein [Ralstonia sp.
5_7_47FAA]
gi|187728209|gb|ACD29373.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|240867969|gb|ACS65629.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|308922449|gb|EFP68073.1| cold shock transcription regulator protein [Ralstonia sp.
5_7_47FAA]
Length = 67
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ SAG +L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSAINSAGFKSLKEGQKVSFEVTQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 GK--QASNI 64
>gi|296130972|ref|YP_003638222.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
gi|296022787|gb|ADG76023.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI PE G DVF+H SA+ + G +L E Q V +D
Sbjct: 1 MPTGIVKWFNAEKGFGFIAPED---GGPDVFVHYSAIQTQGYRSLEENQRVQFDVQAGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 G--PQASNVTP 66
>gi|15965810|ref|NP_386163.1| cold shock transcription regulator protein [Sinorhizobium
meliloti 1021]
gi|307311344|ref|ZP_07590987.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307318877|ref|ZP_07598309.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|7387593|sp|Q9Z3S6|CSPA_RHIME RecName: Full=Cold shock protein CspA
gi|3776223|gb|AAC64672.1| CspA [Sinorhizobium meliloti]
gi|15075079|emb|CAC46636.1| Cold shock transcriptional regulator [Sinorhizobium meliloti
1021]
gi|306895598|gb|EFN26352.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306899645|gb|EFN30273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 69
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L EGQ VTYD V++
Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDD---GATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTK 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|223982871|ref|ZP_03633090.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
12042]
gi|223965156|gb|EEF69449.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
12042]
Length = 69
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KGYGFI+ + D+F+H S + +G +L EGQ V+YD ++
Sbjct: 1 MNTGKVKWFNAEKGYGFISDDN---GQGDIFVHFSGINGSGYKSLEEGQKVSYDVENDER 57
Query: 62 NGKYSAENLKLV 73
+GK A N+ ++
Sbjct: 58 SGKTRAVNVTVL 69
>gi|307546021|ref|YP_003898500.1| cold shock protein CspA [Halomonas elongata DSM 2581]
gi|307218045|emb|CBV43315.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
elongata DSM 2581]
Length = 68
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI+PE GDD+F+H S + + G +L +GQ V+++ Q
Sbjct: 1 MATGTVKWFNDTKGYGFISPED---GGDDLFVHFSEIQAEGFKSLQDGQKVSFEVTQGKK 57
Query: 62 NGKYSAENLKL 72
A N+++
Sbjct: 58 G--LQASNVRV 66
>gi|21230743|ref|NP_636660.1| cold shock protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|21242090|ref|NP_641672.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306]
gi|66769261|ref|YP_244023.1| cold shock protein [Xanthomonas campestris pv. campestris str.
8004]
gi|78046945|ref|YP_363120.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|84623422|ref|YP_450794.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|166712821|ref|ZP_02244028.1| cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256]
gi|188577268|ref|YP_001914197.1| hypothetical protein PXO_01731 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188992412|ref|YP_001904422.1| cold shock protein [Xanthomonas campestris pv. campestris str.
B100]
gi|289662812|ref|ZP_06484393.1| cold shock protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670308|ref|ZP_06491383.1| cold shock protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
gi|325915841|ref|ZP_08178140.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
gi|325926981|ref|ZP_08188256.1| cold-shock DNA-binding protein family [Xanthomonas perforans
91-118]
gi|21107498|gb|AAM36208.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21112338|gb|AAM40584.1| cold shock protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574593|gb|AAY50003.1| cold shock protein [Xanthomonas campestris pv. campestris str.
8004]
gi|78035375|emb|CAJ23020.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|84367362|dbj|BAE68520.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|167734172|emb|CAP52380.1| cold shock protein [Xanthomonas campestris pv. campestris]
gi|188521720|gb|ACD59665.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|325537962|gb|EGD09659.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
gi|325542640|gb|EGD14107.1| cold-shock DNA-binding protein family [Xanthomonas perforans
91-118]
Length = 68
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+PE DVF H SA+ S G +L EGQ V+YD Q
Sbjct: 1 MPNGTVKWFNDAKGFGFISPED---GSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 57
Query: 62 NGKYSAENLKLVP 74
A N+ V
Sbjct: 58 G--AQASNITPVE 68
>gi|218294620|ref|ZP_03495474.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
gi|218244528|gb|EED11052.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
Length = 73
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E DVF+H SA+ + G L EG +VT++
Sbjct: 1 MQKGRVKWFNAEKGYGFIERE----GDTDVFVHFSAINAKGFRTLNEGDIVTFEVEPGKN 56
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 57 GKGPQAVNVTVVEPA 71
>gi|237746806|ref|ZP_04577286.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
gi|229378157|gb|EEO28248.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+DVF H SA+ S G +L E Q V++D
Sbjct: 1 MATGTVKWFNDSKGFGFITPD---EGGEDVFAHFSAINSEGFKSLKENQRVSFDITTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 58 GK--QASNITVI 67
>gi|125602074|gb|EAZ41399.1| hypothetical protein OsJ_25920 [Oryza sativa Japonica Group]
Length = 238
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GFITP+ G+D+F+H+S++ S G +L +G +V + + +G
Sbjct: 7 KGTVKWFDATKGFGFITPDD---GGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62
Query: 64 KYSAENLK 71
+ A N+
Sbjct: 63 RTKAVNVT 70
>gi|239981380|ref|ZP_04703904.1| cold shock protein [Streptomyces albus J1074]
gi|291453236|ref|ZP_06592626.1| cold shock protein [Streptomyces albus J1074]
gi|302552310|ref|ZP_07304652.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
gi|291356185|gb|EFE83087.1| cold shock protein [Streptomyces albus J1074]
gi|302469928|gb|EFL33021.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 57 G--PQADMVRV 65
>gi|239930514|ref|ZP_04687467.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291438875|ref|ZP_06578265.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291341770|gb|EFE68726.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 57 G--PQADMVRV 65
>gi|163851319|ref|YP_001639362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|163662924|gb|ABY30291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
Length = 69
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL L EGQ V+Y+ +
Sbjct: 1 MATGTVKWFNGTKGYGFIQPDD---GGKDVFVHISAVERAGLRELAEGQKVSYEVEIDRR 57
Query: 62 NGKYSAENLKL 72
+GK SA L++
Sbjct: 58 SGKESAGQLQV 68
>gi|297159497|gb|ADI09209.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQAVTFDVTQGPK 57
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 58 G--PQAENVS 65
>gi|220920871|ref|YP_002496172.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium nodulans ORS 2060]
gi|219945477|gb|ACL55869.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 69
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV +GL L+EGQ V+Y+ +
Sbjct: 1 MSIGTVKWFNGQKGFGFIQPDD---GGKDVFVHISAVERSGLHTLSEGQKVSYELETDRR 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKQSAGNLR 67
>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-containing protein [Herminiimonas
arsenicoxydans]
gi|133739446|emb|CAL62496.1| Cold shock protein CspD [Herminiimonas arsenicoxydans]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ G L EGQ V+++ Q
Sbjct: 1 MQTGTVKWFNDSKGFGFITPDS---GGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N+K
Sbjct: 58 GK--QASNIK 65
>gi|115525742|ref|YP_782653.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisA53]
gi|209886524|ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5]
gi|299132279|ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|115519689|gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
gi|209874720|gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5]
gi|298592416|gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
Length = 70
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V +
Sbjct: 1 MSMGTVKWFNATKGYGFIQPDD---GGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|329120534|ref|ZP_08249198.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC
BAA-1200]
gi|327461273|gb|EGF07605.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC
BAA-1200]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E GDD+F H SA+ G L EGQ V++D
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMDGFKTLKEGQKVSFDVTSGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 G--LQAANIQ 65
>gi|302870196|ref|YP_003838833.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|315503526|ref|YP_004082413.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|330470396|ref|YP_004408139.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
gi|302573055|gb|ADL49257.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
gi|315410145|gb|ADU08262.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|328813367|gb|AEB47539.1| cold-shock DNA-binding domain protein [Verrucosispora maris
AB-18-032]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L +GQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQK 56
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 57 G--PQAERVRVI 66
>gi|158312417|ref|YP_001504925.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|158107822|gb|ABW10019.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF+H SA+ SAG +L E Q V +D Q
Sbjct: 1 MAQGTVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIDSAGFRSLDENQRVEFDVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AE+++ V
Sbjct: 58 G--PQAEHVRPV 67
>gi|295696558|ref|YP_003589796.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
gi|295412160|gb|ADG06652.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
Length = 66
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFITP+ G DVF+H SA+ G L EGQ V YD V+
Sbjct: 2 KGKVKWFNAEKGYGFITPDD---GGKDVFVHYSAIQEEGFRTLEEGQDVEYDIVEGPRG- 57
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 58 -PQAANVVKL 66
>gi|294630012|ref|ZP_06708572.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292833345|gb|EFF91694.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G +L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRSLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 57 G--PQADMVRV 65
>gi|49474484|ref|YP_032526.1| cold shock protein [Bartonella quintana str. Toulouse]
gi|49239988|emb|CAF26402.1| Cold shock protein [Bartonella quintana str. Toulouse]
Length = 69
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P + DVF+H SAV +GL L EGQ ++YD + +
Sbjct: 1 MSTGTVKWFNATKGFGFIQPSDGSV---DVFVHISAVERSGLSTLNEGQKISYDVLHDRR 57
Query: 62 NGKYSAENL 70
+GK +A NL
Sbjct: 58 SGKPAAGNL 66
>gi|317123476|ref|YP_004097588.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
gi|315587564|gb|ADU46861.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF+H SA+ S G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIQSNGYRSLDEAQRVEFEVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQADAVRPL 67
>gi|239980196|ref|ZP_04702720.1| cold shock protein [Streptomyces albus J1074]
gi|291452050|ref|ZP_06591440.1| cold shock protein [Streptomyces albus J1074]
gi|291354999|gb|EFE81901.1| cold shock protein [Streptomyces albus J1074]
Length = 67
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|319405285|emb|CBI78899.1| cold shock protein [Bartonella sp. AR 15-3]
Length = 69
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P DVF+H SA+ +GL +L EGQ ++YD +Q+
Sbjct: 1 MSTGTVKWFNTNKGFGFIQPND---GSADVFVHISALERSGLHDLNEGQKISYDILQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK+SA NL +
Sbjct: 58 SGKFSAGNLSAL 69
>gi|333027864|ref|ZP_08455928.1| putative cold shock protein [Streptomyces sp. Tu6071]
gi|332747716|gb|EGJ78157.1| putative cold shock protein [Streptomyces sp. Tu6071]
Length = 86
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q
Sbjct: 19 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQK 75
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 76 G--LQAENITP 84
>gi|297193625|ref|ZP_06911023.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197721828|gb|EDY65736.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 67
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +KL
Sbjct: 57 G--PQADMVKL 65
>gi|254386794|ref|ZP_05002084.1| cold shock protein [Streptomyces sp. Mg1]
gi|194345629|gb|EDX26595.1| cold shock protein [Streptomyces sp. Mg1]
Length = 68
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +KL
Sbjct: 57 G--PQADMVKL 65
>gi|150397151|ref|YP_001327618.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150028666|gb|ABR60783.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 69
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L EGQ VT+D V++
Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDD---GATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTK 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|313900176|ref|ZP_07833676.1| cold shock protein CspB [Clostridium sp. HGF2]
gi|312955228|gb|EFR36896.1| cold shock protein CspB [Clostridium sp. HGF2]
Length = 66
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT + G D+F+H S++ S G L EGQ V +D V++D
Sbjct: 1 MSTGKVKWFNAEKGYGFITSD----EGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESDR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--QQAANVTV 65
>gi|90021330|ref|YP_527157.1| cold-shock DNA-binding protein family protein [Saccharophagus
degradans 2-40]
gi|89950930|gb|ABD80945.1| cold-shock DNA-binding protein family [Saccharophagus degradans
2-40]
Length = 89
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+D+F H S++ G L GQ VT++ + D
Sbjct: 1 MPTGTVKWFNNAKGFGFILPD---AGGEDLFAHYSSIEMEGYRTLKAGQPVTFEIEKGDK 57
Query: 62 NGKYSAENLKL--VPKSSN 78
A+N++ +P++S
Sbjct: 58 G--LHAKNIQCTDLPETSE 74
>gi|312962258|ref|ZP_07776750.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6]
gi|311283595|gb|EFQ62184.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6]
Length = 67
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT +G G DVF+H SA+ S G L E Q V ++ Q
Sbjct: 1 MATGTVKWFNAEKGFGFITQDG---GGADVFVHFSAIQSDGFKTLEENQKVEFEIEQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++++V
Sbjct: 58 G--PQATSVRVV 67
>gi|302878597|ref|YP_003847161.1| cold-shock DNA-binding domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302581386|gb|ADL55397.1| cold-shock DNA-binding domain protein [Gallionella
capsiferriformans ES-2]
Length = 68
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+P+ GDD+F H SA+ +G +L EGQ +++D Q
Sbjct: 1 MATGTVKWFNDEKGFGFISPDD---GGDDLFAHFSAINISGFKSLKEGQKISFDVAQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+++V
Sbjct: 58 G--RQASNIQIV 67
>gi|30249693|ref|NP_841763.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
europaea ATCC 19718]
gi|30180730|emb|CAD85642.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
Length = 67
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ G L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMTGFKTLKEGQKVSFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|288962373|ref|YP_003452668.1| cold shock protein [Azospirillum sp. B510]
gi|288914639|dbj|BAI76124.1| cold shock protein [Azospirillum sp. B510]
Length = 69
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SAV AGL +L +GQ ++Y+ ++
Sbjct: 1 MPVGTVKWFNSTKGFGFIQPES---GGPDVFVHISAVERAGLRSLVDGQKISYEEQRDPK 57
Query: 62 NGKYSAENLKLV 73
GK SAENLK V
Sbjct: 58 RGKTSAENLKAV 69
>gi|328884096|emb|CCA57335.1| Cold shock protein CspA [Streptomyces venezuelae ATCC 10712]
Length = 67
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G +L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRSLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +KL
Sbjct: 57 G--PQADMVKL 65
>gi|217977240|ref|YP_002361387.1| cold-shock DNA-binding domain protein [Methylocella silvestris
BL2]
gi|217502616|gb|ACK50025.1| cold-shock DNA-binding domain protein [Methylocella silvestris
BL2]
Length = 70
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+D F+H SAV AG+ +L EGQ V ++ V +
Sbjct: 1 MTTGTVKWFNSQKGFGFIAPDD---GGNDAFVHISAVERAGIGDLQEGQKVGFELVADRK 57
Query: 62 NGKYSAENLKLV 73
+GK SA+NLKL+
Sbjct: 58 SGKMSADNLKLL 69
>gi|108763112|ref|YP_629869.1| cold-shock protein CspA [Myxococcus xanthus DK 1622]
gi|4193390|gb|AAD10033.1| CspA [Myxococcus xanthus]
gi|108466992|gb|ABF92177.1| cold-shock protein CspA [Myxococcus xanthus DK 1622]
Length = 68
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF H +A+ + G L EGQ V ++ +
Sbjct: 1 MATGTVKWFNDAKGFGFIAQDD---GGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPK 57
Query: 62 NGKYSAENLKLV 73
AEN+++V
Sbjct: 58 G--LQAENVRVV 67
>gi|319786935|ref|YP_004146410.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465447|gb|ADV27179.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 68
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+PE DVF H SA+ + G +L EGQ V+Y+ Q
Sbjct: 1 MANGTVKWFNDAKGFGFISPED---GSADVFAHFSAINAKGFRSLREGQRVSYEVTQGPK 57
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 58 G--AQASNITPLD 68
>gi|330965607|gb|EGH65867.1| cold shock domain family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 94
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V++D +Q
Sbjct: 3 MLNGKVKWFNNAKGYGFILEDGKP--DEDLFAHFSAIQMDGYKTLKAGQPVSFDIIQGPK 60
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 61 G--LHAVNIQ 68
>gi|303233128|ref|ZP_07319801.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4]
gi|302480713|gb|EFL43800.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4]
Length = 67
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V +D
Sbjct: 1 MAQGTVKWFNPDKGYGFISRED----GDDLFVHFSEIQMDGFKTLEEGQAVEFDVTTGQ- 55
Query: 62 NGKYSAENLK 71
NGK A N++
Sbjct: 56 NGKLQASNVR 65
>gi|251783434|ref|YP_002997739.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242392066|dbj|BAH82525.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 69
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 3 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 58
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 59 G--PQAVNITKL 68
>gi|187478585|ref|YP_786609.1| cold shock-like protein [Bordetella avium 197N]
gi|115423171|emb|CAJ49702.1| cold shock-like protein [Bordetella avium 197N]
Length = 81
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V+++ +Q
Sbjct: 17 TGTVKWFNDAKGFGFITPDD---GGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQGPKGK 73
Query: 64 KYSAENLK 71
A N+
Sbjct: 74 --QALNIT 79
>gi|125624064|ref|YP_001032547.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris
MG1363]
gi|125624081|ref|YP_001032564.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris
MG1363]
gi|3850776|emb|CAA76697.1| cold shock protein D [Lactococcus lactis subsp. cremoris MG1363]
gi|124492872|emb|CAL97830.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492889|emb|CAL97848.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070833|gb|ADJ60233.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
gi|300070850|gb|ADJ60250.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
gi|326407854|gb|ADZ64925.1| cold shock protein [Lactococcus lactis subsp. lactis CV56]
Length = 66
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT E G D+F H SA+ S G +L EGQ V +D +
Sbjct: 1 MANGTVKWFNATKGFGFITSED----GQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNITK 65
>gi|307545830|ref|YP_003898309.1| cold shock protein CspA [Halomonas elongata DSM 2581]
gi|307217854|emb|CBV43124.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
elongata DSM 2581]
Length = 68
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ +GDD+F H S + + G +L +GQ V++D Q
Sbjct: 1 MATGTVKWFNDTKGFGFISPDD---NGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKK 57
Query: 62 NGKYSAENLKLVP 74
A N+K+V
Sbjct: 58 G--LQASNIKVVD 68
>gi|304385436|ref|ZP_07367781.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284]
gi|304328643|gb|EFL95864.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284]
Length = 69
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G++KW+N DKG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D
Sbjct: 3 IMEQGTVKWFNADKGFGFITRED----GSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 58
Query: 61 ANGKYSAENLKL 72
A N++
Sbjct: 59 RG--PQAVNVEK 68
>gi|294085741|ref|YP_003552501.1| cold-shock DNA-binding domain-containing protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292665316|gb|ADE40417.1| Cold-shock DNA-binding domain protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 76
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI P+ S G+DVF+H +AV ++GL L EGQ VTY+ +
Sbjct: 8 MSQGTVKWFNTQKGYGFIDPDDS---GNDVFVHITAVQNSGLNGLNEGQKVTYELEE-QR 63
Query: 62 NGKYSAENLKLVP 74
NGK +A NL++V
Sbjct: 64 NGKMAAVNLEVVE 76
>gi|209521754|ref|ZP_03270439.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|209497821|gb|EDZ97991.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + ++G +L E Q V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIQASGFKSLQENQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAI 67
>gi|116696515|ref|YP_842091.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|113531014|emb|CAJ97361.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
Length = 98
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW+N KG+GFI P+ GDD+F H S + + G +L E Q V ++
Sbjct: 17 IMQTGIVKWFNDAKGFGFIKPD---AGGDDLFAHFSEIRADGFKSLQENQRVQFEVKNGP 73
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 74 KG--LQAANITPL 84
>gi|104783080|ref|YP_609578.1| cold shock protein [Pseudomonas entomophila L48]
gi|95112067|emb|CAK16794.1| putative cold shock protein [Pseudomonas entomophila L48]
Length = 196
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 130 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMHRDKG- 184
Query: 64 KYSAENLKLVPK 75
AE++ V +
Sbjct: 185 -LQAEDVVAVSR 195
>gi|294101358|ref|YP_003553216.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
gi|293616338|gb|ADE56492.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
Length = 66
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT + G DVF+H SA+ G L E Q V++D Q +
Sbjct: 1 MAQGTVKWFNDSKGYGFITTD----EGKDVFVHYSAIMGDGFKTLAENQRVSFDVTQGEK 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--PQAANVQKL 66
>gi|295838116|ref|ZP_06825049.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|302520033|ref|ZP_07272375.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
gi|318062306|ref|ZP_07981027.1| cold shock protein [Streptomyces sp. SA3_actG]
gi|318081844|ref|ZP_07989153.1| cold shock protein [Streptomyces sp. SA3_actF]
gi|197700035|gb|EDY46968.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|302428928|gb|EFL00744.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 57 G--PQADMVR 64
>gi|89097885|ref|ZP_01170772.1| cold shock protein [Bacillus sp. NRRL B-14911]
gi|89087387|gb|EAR66501.1| cold shock protein [Bacillus sp. NRRL B-14911]
Length = 66
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V +D +
Sbjct: 1 MATGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQSEGFKSLDEGQEVEFDIEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVTKL 66
>gi|328884303|emb|CCA57542.1| Cold shock protein CspD [Streptomyces venezuelae ATCC 10712]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E QLVT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINANGFRSLEENQLVTFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVSP 66
>gi|302538788|ref|ZP_07291130.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302447683|gb|EFL19499.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ S G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSTGYRELQEGQAVTFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+ L
Sbjct: 58 G--PQAENINL 66
>gi|27376556|ref|NP_768085.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27349697|dbj|BAC46710.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 70
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ V +
Sbjct: 1 MSMGTVKWFNATKGFGFIQPDD---GGKDVFVHISAVERAGLGTLREGQKISYEIVADRR 57
Query: 62 NGKYSAENLK 71
+GK +A+NL+
Sbjct: 58 SGKSAADNLR 67
>gi|256397223|ref|YP_003118787.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256363449|gb|ACU76946.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGSDVFVHYSAIQMDGYRSLEENQRVEFEISQGQK 56
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 57 G--PQADMVRVI 66
>gi|271961744|ref|YP_003335940.1| cold-shock DNA-binding domain-containing protein
[Streptosporangium roseum DSM 43021]
gi|270504919|gb|ACZ83197.1| putative cold-shock DNA-binding domain protein [Streptosporangium
roseum DSM 43021]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+G DVF+H S + G +L +GQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPDG---GAPDVFVHFSEIQGNGYRSLEDGQRVEFEITQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQASQVRAV 67
>gi|108761073|ref|YP_631772.1| cold-shock protein CspD [Myxococcus xanthus DK 1622]
gi|4193396|gb|AAD10036.1| CspD [Myxococcus xanthus]
gi|108464953|gb|ABF90138.1| cold-shock protein CspD [Myxococcus xanthus DK 1622]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+T +G G+DVF H +A+ G L EGQ V ++ +
Sbjct: 1 MATGTVKWFNDAKGFGFLTQDG---GGEDVFCHHTAINMDGFRTLQEGQKVEFEVTRGPK 57
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 58 G--LQAQNVR 65
>gi|114330329|ref|YP_746551.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
eutropha C91]
gi|114307343|gb|ABI58586.1| cold shock protein E (CspE) [Nitrosomonas eutropha C91]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ +D+F H SA++ G L EGQ V++D Q
Sbjct: 1 MTTGIVKWFNDAKGFGFITPDD---GSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|319939553|ref|ZP_08013913.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
gi|319811539|gb|EFW07834.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ S G +L EG+ VT+D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISQEN----GPDVFAHFSAIQSDGFKSLNEGEKVTFDIEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAINITKL 66
>gi|172041529|ref|YP_001801243.1| putative cold shock protein [Corynebacterium urealyticum DSM
7109]
gi|171852833|emb|CAQ05809.1| putative cold shock protein [Corynebacterium urealyticum DSM
7109]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI PE D+F+H S + S+G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGYGFIAPED---GSADLFVHYSEIQSSGFRTLEEDQKVEFEVGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+N++ +
Sbjct: 58 G--PQAQNVQPL 67
>gi|325920664|ref|ZP_08182574.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
19865]
gi|325548854|gb|EGD19798.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
19865]
Length = 68
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+PE DVF H SA+ S G +L EGQ V+YD Q
Sbjct: 1 MQNGTVKWFNDAKGFGFISPED---GSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 57
Query: 62 NGKYSAENLKLVP 74
A N+ V
Sbjct: 58 G--AQASNITPVE 68
>gi|86743144|ref|YP_483544.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
gi|86570006|gb|ABD13815.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
Length = 67
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H S++ + G +L EGQ V ++ VQ
Sbjct: 1 MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQK 57
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 58 G--PQADNVQPV 67
>gi|296127882|ref|YP_003635132.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
gi|296019697|gb|ADG72933.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
Length = 67
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P DVF H SA+AS+G L E Q V ++ Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAPSD---GSADVFAHYSAIASSGFRTLEENQQVEFEVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A +++ +
Sbjct: 58 G--LQASDIRPL 67
>gi|284989363|ref|YP_003407917.1| cold-shock DNA-binding domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062608|gb|ADB73546.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 66
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI + G DVF+H SA+ G +L EGQ VT++ VQ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAVD----GGQDVFVHYSAIQMDGYKSLDEGQRVTFEVVQGEK 56
Query: 62 NGKYSAE 68
+ A
Sbjct: 57 GPQADAV 63
>gi|329936006|ref|ZP_08285806.1| cold shock protein [Streptomyces griseoaurantiacus M045]
gi|329304484|gb|EGG48362.1| cold shock protein [Streptomyces griseoaurantiacus M045]
Length = 67
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVSFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|294668449|ref|ZP_06733549.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309602|gb|EFE50845.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 67
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E GDD+F H SA+ G L EGQ V++D
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMEGFKTLKEGQKVSFDVTSGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 G--LQAANIQ 65
>gi|220921802|ref|YP_002497103.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium nodulans ORS 2060]
gi|219946408|gb|ACL56800.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 69
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KGYGFI P+ G DVF+H SAV AGL L EGQ ++Y+ +
Sbjct: 1 MNTGTVKWFNDQKGYGFIQPDD---GGKDVFVHISAVERAGLRGLVEGQKISYELQTDKR 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKVSAGNLQ 67
>gi|134282646|ref|ZP_01769350.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|254204405|ref|ZP_04910758.1| cold-shock domain family protein [Burkholderia mallei JHU]
gi|134246203|gb|EBA46293.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|147753991|gb|EDK61055.1| cold-shock domain family protein [Burkholderia mallei JHU]
Length = 83
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFITP+ GDD+F H S + S G L E Q V+++ +
Sbjct: 16 LMDTGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLAENQKVSFETKRGP 72
Query: 61 ANGKYSAENLKLV 73
A N+K +
Sbjct: 73 KG--LQAANIKPL 83
>gi|92118046|ref|YP_577775.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800940|gb|ABE63315.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 69
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G G D+F+H SAV AGL +L +GQ V+++ +
Sbjct: 1 MATGTVKWFNATKGFGFIQPDG---GGQDIFVHTSAVERAGLSSLNDGQKVSFEAKTDSM 57
Query: 62 NGKYSAENLKL 72
GK SAENL++
Sbjct: 58 RGKTSAENLRV 68
>gi|163840196|ref|YP_001624601.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
gi|162953672|gb|ABY23187.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
Length = 100
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ S +DVF+H S + + G L E Q V ++ Q
Sbjct: 33 MAQGTVKWFNAEKGFGFITPDESP---NDVFVHYSEIQTKGFRTLDENQRVEFEIGQGAK 89
Query: 62 NGKYSAENLKLV 73
A + ++
Sbjct: 90 G--PQATGVNVI 99
>gi|226944903|ref|YP_002799976.1| cold shock protein, CspD [Azotobacter vinelandii DJ]
gi|226719830|gb|ACO79001.1| cold shock protein, CspD [Azotobacter vinelandii DJ]
Length = 92
Score = 93.6 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ VT++ +Q
Sbjct: 1 MLSGKVKWFNNAKGYGFIVADGR---DEDLFAHYSAIQMDGYKTLKAGQAVTFELLQGPK 57
Query: 62 NGKYSAENLKLVPK 75
A N+ P
Sbjct: 58 G--LHAINIHPCPA 69
>gi|299131851|ref|ZP_07025046.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|298591988|gb|EFI52188.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
Length = 69
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI P G DVF+H SAV AGL NL EGQ V ++ +
Sbjct: 1 MAQGTVKWFNSQKGFGFIAPTD---GGTDVFVHISAVERAGLSNLAEGQKVEFEAKTDKM 57
Query: 62 NGKYSAENLKLV 73
GK SAENL+L+
Sbjct: 58 RGKTSAENLQLL 69
>gi|325291550|ref|YP_004277414.1| cold shock protein [Agrobacterium sp. H13-3]
gi|325059403|gb|ADY63094.1| cold shock protein [Agrobacterium sp. H13-3]
Length = 69
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV AG+ +L +GQ ++Y+ Q+
Sbjct: 1 MATGTVKWFNATKGYGFIQPDD---GSQDVFVHISAVERAGMTSLNDGQKLSYELTQDRR 57
Query: 62 NGKYSAENL 70
+GK SA L
Sbjct: 58 SGKMSAGEL 66
>gi|302536155|ref|ZP_07288497.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302445050|gb|EFL16866.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVNFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|260772638|ref|ZP_05881554.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14]
gi|260611777|gb|EEX36980.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14]
Length = 73
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG +D+F H S + G L GQ V Y+ Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---GNEDIFAHYSTIKMDGYRTLKAGQQVAYEVEQGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
Y A N+ + +
Sbjct: 58 G--YHASNVVPIEGQPS 72
>gi|197104417|ref|YP_002129794.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
gi|196477837|gb|ACG77365.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 250
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAVA AGL L EG V Y+ Q+
Sbjct: 56 MASGTVKWFNTAKGFGFIQPDD---GGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRR 112
Query: 62 NGKYSAENLKLVPKSS 77
+GK +A ++ + + +
Sbjct: 113 SGKLAATSIVVTAQGA 128
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+NP KG+GFI PEG G D+F+H SAV AGL L EGQ V +D Q+ +GK
Sbjct: 184 GVVKWFNPTKGFGFIKPEG---GGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK 240
Query: 65 YSAENLKL 72
SA NLK+
Sbjct: 241 TSATNLKI 248
>gi|182437019|ref|YP_001824738.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239943163|ref|ZP_04695100.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|239989621|ref|ZP_04710285.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
gi|282860556|ref|ZP_06269622.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|291446637|ref|ZP_06586027.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|326777634|ref|ZP_08236899.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178465535|dbj|BAG20055.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|282564292|gb|EFB69828.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|291349584|gb|EFE76488.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|320009370|gb|ADW04220.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
gi|326657967|gb|EGE42813.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 68
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +KL
Sbjct: 57 G--PQADMVKL 65
>gi|145592834|ref|YP_001157131.1| cold-shock DNA-binding domain-containing protein [Salinispora
tropica CNB-440]
gi|159035978|ref|YP_001535231.1| cold-shock DNA-binding domain-containing protein [Salinispora
arenicola CNS-205]
gi|238061348|ref|ZP_04606057.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|145302171|gb|ABP52753.1| cold-shock DNA-binding protein family [Salinispora tropica
CNB-440]
gi|157914813|gb|ABV96240.1| cold-shock DNA-binding domain protein [Salinispora arenicola
CNS-205]
gi|237883159|gb|EEP71987.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L +GQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQK 56
Query: 62 NGKYSAENLKLV 73
AE +++V
Sbjct: 57 G--PQAERVRVV 66
>gi|188580080|ref|YP_001923525.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
gi|179343578|gb|ACB78990.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 69
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ ++Y+ + +
Sbjct: 1 MDTGTVKWFNETKGYGFIQPDN---GGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKR 57
Query: 62 NGKYSAENLKLV 73
+GK +A NL+ V
Sbjct: 58 SGKDAAGNLQAV 69
>gi|229820912|ref|YP_002882438.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
12333]
gi|229566825|gb|ACQ80676.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
12333]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI +G G DVF+H SA+ S G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNSEKGYGFIAQDG---GGADVFVHYSAIESDGYRSLEEAQRVEFEITQGPK 57
Query: 62 NGKYSAENLKLV 73
AE+++ V
Sbjct: 58 G--PQAESVRAV 67
>gi|68537049|ref|YP_251754.1| putative cold shock protein [Corynebacterium jeikeium K411]
gi|260579394|ref|ZP_05847276.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
gi|68264648|emb|CAI38136.1| putative cold shock protein [Corynebacterium jeikeium K411]
gi|258602523|gb|EEW15818.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ DVF+H S + +G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPDD---GSSDVFVHYSEIQGSGFRTLEENQKVEFEIGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+N+ +
Sbjct: 58 G--PQAQNVTAL 67
>gi|172057695|ref|YP_001814155.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|172057697|ref|YP_001814157.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|171990216|gb|ACB61138.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
255-15]
gi|171990218|gb|ACB61140.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
255-15]
Length = 66
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQTDGFKSLDEGQEVSFEVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVTKL 66
>gi|311895414|dbj|BAJ27822.1| putative cold shock protein [Kitasatospora setae KM-6054]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI +G G DVF H S + S G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGYGFIEQDG---GGADVFAHYSNIQSTGFRELIEGQKVEFDVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPI 67
>gi|297537796|ref|YP_003673565.1| cold-shock DNA-binding domain-containing protein [Methylotenera
sp. 301]
gi|297257143|gb|ADI28988.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H SA+ AG +L EGQ V+++
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGDDLFAHFSAIVEAGYKSLKEGQRVSFEVTDGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|226939300|ref|YP_002794371.1| cspD2 [Laribacter hongkongensis HLHK9]
gi|226714224|gb|ACO73362.1| cspD2 [Laribacter hongkongensis HLHK9]
Length = 68
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSAINMNGFKTLKEGQRVNFDVNQGPK 57
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 58 GK--QASNIT 65
>gi|163867963|ref|YP_001609167.1| cold shock protein [Bartonella tribocorum CIP 105476]
gi|161017614|emb|CAK01172.1| cold shock protein [Bartonella tribocorum CIP 105476]
Length = 69
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H SAV +GL NL EGQ V+YD +Q+
Sbjct: 1 MSTGTVKWFNTTKGFGFIQPSD---GSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK++A NL +
Sbjct: 58 SGKFAAGNLAAL 69
>gi|295394500|ref|ZP_06804723.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
gi|294972679|gb|EFG48531.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT +GS D+F+H S + G +L EGQ V ++ Q D
Sbjct: 1 MTQGTVKWFNAEKGYGFITVDGS---DQDIFVHYSEIQMDGYRSLQEGQQVEFNVGQGDK 57
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 58 G--PQAEGVTPL 67
>gi|29827367|ref|NP_822001.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29604466|dbj|BAC68536.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 67
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF+H SA+ SAG L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQEG---GGPDVFVHYSAINSAGFRELQEGQKVNFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|121711172|ref|XP_001273202.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119401352|gb|EAW11776.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 125
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE +G+D+F+H AV G +L EGQ VT++ VQ
Sbjct: 59 RQNGTVKWFNDEKGYGFITPE----TGEDLFVHFRAVEGNGFKSLKEGQKVTFEAVQGQK 114
Query: 62 NGKYSAENLKLVP 74
A+ ++++
Sbjct: 115 G--RQADKVQVIE 125
>gi|322412804|gb|EFY03712.1| Major cold-shock protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|323128184|gb|ADX25481.1| Major cold-shock protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNITKL 66
>gi|254418731|ref|ZP_05032455.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
gi|196184908|gb|EDX79884.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
Length = 70
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KGYGFI P+ G DVF+H SAV AGL L E Q V+Y+ ++
Sbjct: 1 MATGTVKWFNPTKGYGFIQPDD---GGKDVFVHISAVEGAGLRGLDENQKVSYELERDKR 57
Query: 62 NGKYSAENLKLV 73
+GK SA L+ +
Sbjct: 58 SGKESAGQLQTI 69
>gi|260428302|ref|ZP_05782281.1| conserved domain protein [Citreicella sp. SE45]
gi|260422794|gb|EEX16045.1| conserved domain protein [Citreicella sp. SE45]
Length = 68
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG DVF+H SAV +GL L + Q V+Y+ Q+
Sbjct: 1 MATGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTELKDNQKVSYEL-QSGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NL+L+
Sbjct: 57 DGRESAINLELL 68
>gi|315642390|ref|ZP_07896985.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
gi|315482298|gb|EFU72851.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
Length = 96
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KG+GFIT E G DVF H SA+ + G +L EGQ VT+D +
Sbjct: 31 MNKGTVKWFNAEKGFGFITGEN----GQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 86
Query: 62 NGKYSAENL 70
A N+
Sbjct: 87 G--MQAVNI 93
>gi|297562583|ref|YP_003681557.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847031|gb|ADH69051.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+P+G G D F+H SA+ G NL E Q V ++ VQ
Sbjct: 1 MAQGTVKWFNGEKGFGFISPDG---GGPDAFVHYSAIQGTGFRNLEENQRVEFEVVQGTR 57
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 58 G--PQAENVVAL 67
>gi|153005392|ref|YP_001379717.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. Fw109-5]
gi|152028965|gb|ABS26733.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 65
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ E G+DVF+H +A+ G L EG+ V +D Q
Sbjct: 1 MATGTVKWFNDAKGFGFISQE----GGEDVFVHHTAIQMDGFRTLKEGERVEFDVTQGPK 56
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 57 G--LQAANVR 64
>gi|256831549|ref|YP_003160276.1| cold-shock DNA-binding domain-containing protein [Jonesia
denitrificans DSM 20603]
gi|256685080|gb|ACV07973.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM
20603]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF H SA+ + G L E Q V +D Q
Sbjct: 1 MAFGTVKWFNAEKGFGFIAPED---GSADVFAHYSAIQTNGYRTLEENQRVEFDVAQGPK 57
Query: 62 NGKYSAENLKL 72
AEN++
Sbjct: 58 G--LQAENIRP 66
>gi|182679940|ref|YP_001834086.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635823|gb|ACB96597.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 69
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV + L L EGQ+V+Y+ ++
Sbjct: 1 MANGTVKWFNTTKGYGFIAPQD---GSKDVFVHISAVERSQLRELVEGQVVSYELQRDQR 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKESAVNLR 67
>gi|320333865|ref|YP_004170576.1| cold-shock DNA-binding domain-containing protein [Deinococcus
maricopensis DSM 21211]
gi|319755154|gb|ADV66911.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis
DSM 21211]
Length = 86
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI GS DVF H SA+ G L EG V +D +
Sbjct: 1 MAVGKVKWFNAEKGFGFIEVAGS----PDVFAHFSAIKGTGFKKLNEGDEVEFDIEEGQR 56
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ + +
Sbjct: 57 GKGPQAANIVVTKAAPE 73
>gi|319949463|ref|ZP_08023522.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
gi|319436867|gb|EFV91928.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI P+ DVF H SA+ +G +L E Q V++D Q
Sbjct: 1 MATGTVKWFNADKGFGFIAPDD---GSADVFAHFSAIQGSGYRSLEENQQVSFDVAQGAK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--LQAENITP 66
>gi|222152818|ref|YP_002561995.1| cold shock protein [Streptococcus uberis 0140J]
gi|222113631|emb|CAR41517.1| cold shock protein [Streptococcus uberis 0140J]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E GDDVF H SA+ S G +L EGQ V +D Q
Sbjct: 1 MAQGTVKWFNAEKGFGFISQEN----GDDVFAHFSAIQSDGFKSLDEGQKVEFDIEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQATNITKV 66
>gi|284045400|ref|YP_003395740.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
gi|283949621|gb|ADB52365.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITP+ + D+F+H SA+ G +L EG V+YD Q
Sbjct: 1 MATGTVKWFNDDKGFGFITPDDQS---KDLFVHHSAITGDGFKSLAEGAKVSYDAEQGPK 57
Query: 62 NGKYSAENLKLV 73
+A N+ +
Sbjct: 58 G--PNAANVTTI 67
>gi|206561070|ref|YP_002231835.1| cold shock-like protein [Burkholderia cenocepacia J2315]
gi|198037112|emb|CAR53033.1| cold shock-like protein [Burkholderia cenocepacia J2315]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D VQ
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QASNIQAV 67
>gi|329941434|ref|ZP_08290713.1| cold shock protein [Streptomyces griseoaurantiacus M045]
gi|11933043|emb|CAC19357.1| cold-shock like protein [Streptomyces nodosus]
gi|329299965|gb|EGG43864.1| cold shock protein [Streptomyces griseoaurantiacus M045]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 57 G--PQADMVRV 65
>gi|311897073|dbj|BAJ29481.1| putative cold shock protein [Kitasatospora setae KM-6054]
Length = 67
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ V +D Q
Sbjct: 1 MANGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINASGFRELLEGQKVEFDVTQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PQAENIRPL 67
>gi|254382460|ref|ZP_04997819.1| cold shock protein [Streptomyces sp. Mg1]
gi|194341364|gb|EDX22330.1| cold shock protein [Streptomyces sp. Mg1]
Length = 67
Score = 93.2 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E QLV +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQLVNFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|163857106|ref|YP_001631404.1| cold shock-like protein [Bordetella petrii DSM 12804]
gi|163260834|emb|CAP43136.1| cold shock-like protein [Bordetella petrii]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITP+ D+F H S ++S G +L E Q VT++ Q
Sbjct: 1 MATGIVKWFNAEKGYGFITPDD---GSKDLFAHYSEISSEGYKSLQENQRVTFEVGQGPK 57
Query: 62 NGKYSAENLKL 72
SA+N+K+
Sbjct: 58 G--PSAKNIKV 66
>gi|90425189|ref|YP_533559.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisB18]
gi|90107203|gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB18]
Length = 70
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V +
Sbjct: 1 MSMGTVKWFNATKGFGFIQPDD---GGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKSSADNLR 67
>gi|46202348|ref|ZP_00053353.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 91
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ GS+KW+N KGYGFI P+ G DVF+H SAV AGL L +GQ V++D ++
Sbjct: 23 MPNGSVKWFNSTKGYGFIAPDN---GGADVFVHISAVERAGLSGLNDGQKVSFDEERDPK 79
Query: 62 NGKYSAENLKL 72
GK SA NLK+
Sbjct: 80 KGKTSAVNLKV 90
>gi|225023806|ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC
23834]
gi|224943405|gb|EEG24614.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC
23834]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMNGFKTLKEGQKVSFEVTTGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQP 66
>gi|42391858|dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum]
Length = 231
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+P+ G+D+F+H+SA+ S G +L E V ++ + D +G
Sbjct: 6 KGTVKWFNVTKGFGFISPDD---GGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGD-DG 61
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 62 RTKASDVT 69
>gi|223946111|gb|ACN27139.1| unknown [Zea mays]
Length = 187
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|182680002|ref|YP_001834148.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635885|gb|ACB96659.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 69
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI P+ E G DVF+H SAV +GL +L EGQ + YD V +
Sbjct: 1 MSTGTVKWFNAEKGYGFIQPD---EGGKDVFVHISAVEQSGLRHLAEGQKINYDVVPDKR 57
Query: 62 NGKYSAENLK 71
GK SA NL+
Sbjct: 58 TGKSSAGNLR 67
>gi|114778644|ref|ZP_01453460.1| cold shock protein [Mariprofundus ferrooxydans PV-1]
gi|114551109|gb|EAU53670.1| cold shock protein [Mariprofundus ferrooxydans PV-1]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + GDDVF+H SA+ + G +L EGQ V ++
Sbjct: 1 MATGTVKWFNDTKGFGFIAQDD---GGDDVFVHFSAIQTDGFKSLQEGQKVEFEIEDGQK 57
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 58 G--PQARNVT 65
>gi|146283150|ref|YP_001173303.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501]
gi|145571355|gb|ABP80461.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501]
Length = 243
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI+ + SGDDVF+H A+ G L EGQ V + + D
Sbjct: 177 GTVKWFNTSKGFGFISRD----SGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDKG-- 230
Query: 65 YSAENLKLVPKS 76
AE++ V
Sbjct: 231 LQAEDVVPVEAG 242
>gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]
gi|152983242|ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp.
Marseille]
gi|329903345|ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
gi|133738875|emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas
arsenicoxydans]
gi|151283319|gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp.
Marseille]
gi|327548423|gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ S+G +L E Q V+++
Sbjct: 1 MATGIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QASNIQPI 67
>gi|257057404|ref|YP_003135236.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|256587276|gb|ACU98409.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI + G DVF+H SA+ + G L EG V ++
Sbjct: 1 MAVGTVKWFNAEKGYGFIE----SPDGPDVFVHYSAIQAEGFRTLDEGDRVEFEITAG-R 55
Query: 62 NGKYSAENLKLVP 74
+G+ A +++ +
Sbjct: 56 DGRSQAADVRKLS 68
>gi|295112263|emb|CBL29013.1| cold-shock DNA-binding protein family [Synergistetes bacterium
SGP1]
Length = 66
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V+++ V +
Sbjct: 1 MAQGTVKWFNESKGYGFITAD----EGKDVFVHYSAIQGDGFKTLAEGQKVSFEIVNGEK 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--PQAANVEKL 66
>gi|271970090|ref|YP_003344286.1| cold-shock DNA-binding domain-containing protein
[Streptosporangium roseum DSM 43021]
gi|270513265|gb|ACZ91543.1| putative cold-shock DNA-binding domain protein [Streptosporangium
roseum DSM 43021]
Length = 66
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFI + G DVF+H SA+ G L +GQ V ++ Q
Sbjct: 1 MAQGTVKWFNADKGYGFIAVD----GGKDVFVHYSAIMMDGYRALEQGQRVEFEITQGQK 56
Query: 62 NGKYSAENLKLV 73
AE+++ V
Sbjct: 57 G--PQAESVRAV 66
>gi|237746974|ref|ZP_04577454.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
gi|229378325|gb|EEO28416.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE G+D+F H SA+ +G L EGQ V ++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPED---GGEDLFAHFSAINMSGFKTLKEGQKVQFEVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QASNIQSV 67
>gi|326502466|dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+P+ +D+F+H+S++ + G +L EG++V + + D +G
Sbjct: 8 KGTVKWFNDTKGFGFISPDD---GSEDLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 64 RTKAVDVT 71
>gi|294101897|ref|YP_003553755.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
gi|293616877|gb|ADE57031.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFIT + G D+F+H SA+ + G L EGQ V+++ V+
Sbjct: 1 MTTQGTVKWFNASKGYGFITTD----EGKDIFVHFSAIQTEGFKTLEEGQRVSFEIVEGP 56
Query: 61 ANGKYSAENLKLV 73
A N++ +
Sbjct: 57 KG--EQAANVEKI 67
>gi|226355888|ref|YP_002785628.1| cold-shock DNA-binding domain-containing protein [Deinococcus
deserti VCD115]
gi|226317878|gb|ACO45874.1| putative Cold-shock DNA-binding domain protein [Deinococcus
deserti VCD115]
Length = 94
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI DVF+H SA+ S G L EG V ++
Sbjct: 1 MAQGRVKWFNVEKGYGFIE----HPGNPDVFVHYSAIQSGGFRKLNEGDEVEFEVESGQG 56
Query: 62 NGKYSAENLKLVPKSS 77
N A+N+ + +
Sbjct: 57 NKGPQAKNVVVTNAAP 72
>gi|108758693|ref|YP_628940.1| cold-shock protein CspC [Myxococcus xanthus DK 1622]
gi|4193394|gb|AAD10035.1| CspC [Myxococcus xanthus]
gi|108462573|gb|ABF87758.1| cold-shock protein CspC [Myxococcus xanthus DK 1622]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G G+DVF+H SA+ G L EGQ V ++ +
Sbjct: 1 MATGTVKWFNDAKGFGFIVQDG---GGEDVFVHHSAINMDGFRTLQEGQKVEFEVGRGPK 57
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 58 G--LQAQNVR 65
>gi|77917817|ref|YP_355632.1| cold shock protein [Pelobacter carbinolicus DSM 2380]
gi|77543900|gb|ABA87462.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
DSM 2380]
Length = 66
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT + G DVF+H SA+ G +L EG+ V+++ Q
Sbjct: 1 MIQGTVKWFNDAKGYGFITQDD----GPDVFVHYSAIQVDGYKSLNEGERVSFEVSQGSK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--PQASNVAKV 66
>gi|311897785|dbj|BAJ30193.1| putative cold shock protein [Kitasatospora setae KM-6054]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 57 G--PQADMVR 64
>gi|217969672|ref|YP_002354906.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
gi|217506999|gb|ACK54010.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ +G +L EG+ V++D Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAITMSGFKSLKEGEKVSFDVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|111226121|ref|YP_716915.1| major cold shock protein, ssDNA-binding property [Frankia alni
ACN14a]
gi|111153653|emb|CAJ65413.1| major cold shock protein, ssDNA-binding property [Frankia alni
ACN14a]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H S++ + G +L EGQ V ++ VQ
Sbjct: 1 MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQK 57
Query: 62 NGKYSAENLKL 72
A+N+
Sbjct: 58 G--PQADNVTP 66
>gi|329117514|ref|ZP_08246231.1| major cold shock protein CspA [Streptococcus parauberis NCFD
2020]
gi|326907919|gb|EGE54833.1| major cold shock protein CspA [Streptococcus parauberis NCFD
2020]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E G DVF H S + S G +L EGQ V +D
Sbjct: 1 MAQGTVKWFNAEKGFGFITQEN----GSDVFAHFSEIQSDGYKSLDEGQKVEFDVTDGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNITKL 66
>gi|308234392|ref|ZP_07665129.1| cold-shock DNA-binding protein family [Atopobium vaginae DSM
15829]
gi|328944208|ref|ZP_08241672.1| cold shock protein B [Atopobium vaginae DSM 15829]
gi|327491127|gb|EGF22902.1| cold shock protein B [Atopobium vaginae DSM 15829]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V +D
Sbjct: 1 MAQGTVKWFNPDKGYGFISRED----GDDLFVHFSEIKMDGFKTLDEGQAVEFDITTGQ- 55
Query: 62 NGKYSAENLKL 72
NGK A N++
Sbjct: 56 NGKLQASNVRK 66
>gi|302879451|ref|YP_003848015.1| cold-shock DNA-binding domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302582240|gb|ADL56251.1| cold-shock DNA-binding domain protein [Gallionella
capsiferriformans ES-2]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ +G +L EGQ V++D V+
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GSEDLFAHFSAINMSGFKSLKEGQKVSFDVVKGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GN--QASNIQ 65
>gi|300769133|ref|ZP_07079022.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300493373|gb|EFK28552.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 88
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N DKG+GFIT E G DVF+H SA+ + G L EGQ VTYD Q D
Sbjct: 22 IMKNGTVKWFNADKGFGFITGED----GTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 77
Query: 61 ANGKYSAENLKL 72
A N++
Sbjct: 78 RG--PQATNVQP 87
>gi|167757688|ref|ZP_02429815.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704]
gi|167664708|gb|EDS08838.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704]
Length = 104
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT+D +
Sbjct: 35 LMNNGTVKWFNSEKGYGFITGED----GKDVFVHFSAIMCDGFKTLEEGQAVTFDVEADP 90
Query: 61 AN-GKYSAENL 70
+ K A N+
Sbjct: 91 KDSRKLKAVNV 101
>gi|114326681|ref|YP_743838.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
gi|114314855|gb|ABI60915.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
Length = 83
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KGYGFI P+G G DVF+H SAV AGL L +GQ +++D +
Sbjct: 15 LMPTGTVKWFNATKGYGFIHPDG---GGADVFVHISAVEKAGLSKLDDGQKLSFDL-EAG 70
Query: 61 ANGKYSAENLKL 72
GK SA NLKL
Sbjct: 71 RQGKTSAVNLKL 82
>gi|302544467|ref|ZP_07296809.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|307327771|ref|ZP_07606955.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|11933034|emb|CAC19354.1| cold-shock like protein [Streptomyces hygroscopicus]
gi|297158355|gb|ADI08067.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1]
gi|302462085|gb|EFL25178.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
gi|306886669|gb|EFN17671.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 57 G--PQADMVRV 65
>gi|240850168|ref|YP_002971561.1| cold shock protein [Bartonella grahamii as4aup]
gi|240267291|gb|ACS50879.1| cold shock protein [Bartonella grahamii as4aup]
Length = 69
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H SAV +GL +L EGQ ++YD +Q+
Sbjct: 1 MSTGTVKWFNTTKGFGFIQPSD---GSADVFVHISAVERSGLNSLNEGQKISYDVLQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK++A NL +
Sbjct: 58 SGKFAAGNLAAL 69
>gi|154496406|ref|ZP_02035102.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
29799]
gi|150274489|gb|EDN01566.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
29799]
Length = 70
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFI+ + DVF+H SA+ G L EGQ V+YD +
Sbjct: 1 MYQGTVKWFNETKGFGFISNDD---GSGDVFVHFSAILVDGFKTLAEGQKVSYDTEPDPK 57
Query: 62 N-GKYSAENLKLV 73
+ GK A N++ +
Sbjct: 58 DAGKLRAVNVRPL 70
>gi|299821570|ref|ZP_07053458.1| cold shock protein CspA [Listeria grayi DSM 20601]
gi|299817235|gb|EFI84471.1| cold shock protein CspA [Listeria grayi DSM 20601]
Length = 66
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLDEGQSVEFEIVEGQR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|281492698|ref|YP_003354678.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|281376355|gb|ADA65845.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
Length = 66
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT E G D+F H S++ S G +L EGQ V +D +
Sbjct: 1 MANGTVKWFNATKGFGFITSED----GQDLFAHFSSIQSDGFKSLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNITK 65
>gi|291615324|ref|YP_003525481.1| cold-shock DNA-binding domain protein [Sideroxydans
lithotrophicus ES-1]
gi|291585436|gb|ADE13094.1| cold-shock DNA-binding domain protein [Sideroxydans
lithotrophicus ES-1]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP GDD+F H SA+ S+G LTEGQ V++D
Sbjct: 1 MATGTVKWFNDSKGFGFITPSN---GGDDLFAHFSAIQSSGFKTLTEGQQVSFDITAGPK 57
Query: 62 NGKYSAENLKLVP 74
A N++
Sbjct: 58 G--QQASNIRAAE 68
>gi|188583863|ref|YP_001927308.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
gi|179347361|gb|ACB82773.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 69
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVF+H SAV AGL L EGQ V+Y+ +
Sbjct: 1 MSTGTVKWFNEQKGFGFIQPED---GSKDVFVHISAVERAGLRGLAEGQKVSYELETDRR 57
Query: 62 NGKYSAENLKL 72
+GK SA L++
Sbjct: 58 SGKQSAGQLQV 68
>gi|297196688|ref|ZP_06914086.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297153348|gb|EFH32317.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP+KG+GFI +G G DVF+H SA+AS G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNPEKGFGFIEQDG---GGPDVFVHYSAIASTGFRELFEGQKVQFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|302557416|ref|ZP_07309758.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|302475034|gb|EFL38127.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ + G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINATGFRELQEGQAVTFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+ L
Sbjct: 58 G--PQAENINL 66
>gi|297565513|ref|YP_003684485.1| cold-shock DNA-binding domain-containing protein [Meiothermus
silvanus DSM 9946]
gi|296849962|gb|ADH62977.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM
9946]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI E G DVF+H SA+ + G L EGQ V ++
Sbjct: 1 MKTGTVKWFNAEKGYGFIAQED----GPDVFVHYSAIETDGFRTLQEGQRVQFEVEPGKN 56
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 57 GKGPQAAKVRP 67
>gi|221195898|ref|ZP_03568948.1| conserved domain protein [Atopobium rimae ATCC 49626]
gi|221184232|gb|EEE16629.1| conserved domain protein [Atopobium rimae ATCC 49626]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP+KGYGFI+ E GDD+F+H S + G L EGQ V ++
Sbjct: 1 MAQGTVKWFNPEKGYGFISRED----GDDLFVHYSEIEMDGYKTLDEGQPVEFEITTGQ- 55
Query: 62 NGKYSAENLKLV 73
NGK A ++ +
Sbjct: 56 NGKLQASSVHKI 67
>gi|119476170|ref|ZP_01616522.1| CspA-like protein [marine gamma proteobacterium HTCC2143]
gi|119450797|gb|EAW32031.1| CspA-like protein [marine gamma proteobacterium HTCC2143]
Length = 91
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G DVF H S ++ G L GQ V++D V
Sbjct: 1 MQTGTVKWFNNAKGFGFILPEG---GGADVFAHYSTISMDGYKTLKAGQPVSFDTVNGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N++ S++
Sbjct: 58 G--LHATNIQAAQDSAD 72
>gi|76811741|ref|YP_332524.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|83720401|ref|YP_441317.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|76581194|gb|ABA50669.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|83654226|gb|ABC38289.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis E264]
Length = 81
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ
Sbjct: 15 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 71
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 72 GK--QASNIQ 79
>gi|33596619|ref|NP_884262.1| cold shock-like protein [Bordetella parapertussis 12822]
gi|33601234|ref|NP_888794.1| cold shock-like protein [Bordetella bronchiseptica RB50]
gi|33573320|emb|CAE37303.1| cold shock-like protein [Bordetella parapertussis]
gi|33575669|emb|CAE32747.1| cold shock-like protein [Bordetella bronchiseptica RB50]
Length = 68
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI P+ D+F H S + S G +L E Q V+++ Q
Sbjct: 1 MATGIVKWFNAEKGYGFIMPDD---GSKDLFAHYSEIRSEGYKSLQENQRVSFEVGQGPK 57
Query: 62 NGKYSAENLKLV 73
SA+N+K++
Sbjct: 58 G--PSAKNIKVI 67
>gi|284030059|ref|YP_003379990.1| cold-shock DNA-binding domain-containing protein [Kribbella
flavida DSM 17836]
gi|283809352|gb|ADB31191.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
17836]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+ +G G DVF+H SA+A+ G L E Q V +D Q
Sbjct: 1 MASGTVKWFNGEKGFGFISQDG---GGADVFVHYSAIATDGFRTLDENQKVEFDLAQGPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ V
Sbjct: 58 G--PQAENVRPV 67
>gi|114328925|ref|YP_746082.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
gi|114317099|gb|ABI63159.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
Length = 100
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KGYGFI P + DVF+H SAV AGL +L EGQ + ++ Q
Sbjct: 32 MLHGTVKWFNPTKGYGFIAP---STGEKDVFVHISAVQRAGLRSLNEGQQLDFEIEQ-QQ 87
Query: 62 NGKYSAENLK 71
NG+ +A NL
Sbjct: 88 NGRAAAVNLT 97
>gi|49475887|ref|YP_033928.1| cold shock protein [Bartonella henselae str. Houston-1]
gi|49238695|emb|CAF27946.1| Cold shock protein [Bartonella henselae str. Houston-1]
Length = 69
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H SAV +GL NL EGQ V+YD +Q+
Sbjct: 1 MSTGTVKWFNTTKGFGFIQPSD---GSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRR 57
Query: 62 NGKYSAENL 70
+GK++A NL
Sbjct: 58 SGKFAAGNL 66
>gi|296268070|ref|YP_003650702.1| cold-shock DNA-binding domain-containing protein [Thermobispora
bispora DSM 43833]
gi|296090857|gb|ADG86809.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
43833]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKG+GFI P+G DVF+H SA+ +G NL +GQ V +D V +
Sbjct: 1 MAQGTVKWFNPDKGFGFIAPDGGE---PDVFVHFSAIIGSGYRNLEDGQRVEFDIVSSPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQASNVRGI 67
>gi|307729849|ref|YP_003907073.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323525902|ref|YP_004228055.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|307584384|gb|ADN57782.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323382904|gb|ADX54995.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + + G +L E Q V+++ Q
Sbjct: 1 MPTGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIRAEGFKSLQENQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++K +
Sbjct: 58 GK--QAADIKPI 67
>gi|69247317|ref|ZP_00604299.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
gi|257879979|ref|ZP_05659632.1| cold-shock protein [Enterococcus faecium 1,230,933]
gi|257883090|ref|ZP_05662743.1| cold-shock protein [Enterococcus faecium 1,231,502]
gi|257884117|ref|ZP_05663770.1| cold-shock protein [Enterococcus faecium 1,231,501]
gi|257890488|ref|ZP_05670141.1| cold-shock protein [Enterococcus faecium 1,231,410]
gi|257894415|ref|ZP_05674068.1| cold-shock protein [Enterococcus faecium 1,231,408]
gi|258614362|ref|ZP_05712132.1| cold-shock domain-contain protein [Enterococcus faecium DO]
gi|260558929|ref|ZP_05831116.1| cold-shock protein [Enterococcus faecium C68]
gi|261209452|ref|ZP_05923815.1| cold-shock protein [Enterococcus faecium TC 6]
gi|289567727|ref|ZP_06448016.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
gi|293553822|ref|ZP_06674437.1| cold-shock protein [Enterococcus faecium E1039]
gi|293559767|ref|ZP_06676287.1| cold shock protein [Enterococcus faecium E1162]
gi|293571661|ref|ZP_06682682.1| cold-shock protein [Enterococcus faecium E980]
gi|294616363|ref|ZP_06696156.1| cold-shock protein [Enterococcus faecium E1636]
gi|294619946|ref|ZP_06699319.1| cold shock protein [Enterococcus faecium E1679]
gi|294622017|ref|ZP_06701160.1| cold shock protein [Enterococcus faecium U0317]
gi|314940163|ref|ZP_07847341.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|314942420|ref|ZP_07849263.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|314950182|ref|ZP_07853467.1| major cold shock protein CspA [Enterococcus faecium TX0082]
gi|314952304|ref|ZP_07855315.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|314994253|ref|ZP_07859556.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|314997168|ref|ZP_07862154.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|68194887|gb|EAN09358.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
gi|257814207|gb|EEV42965.1| cold-shock protein [Enterococcus faecium 1,230,933]
gi|257818748|gb|EEV46076.1| cold-shock protein [Enterococcus faecium 1,231,502]
gi|257819955|gb|EEV47103.1| cold-shock protein [Enterococcus faecium 1,231,501]
gi|257826848|gb|EEV53474.1| cold-shock protein [Enterococcus faecium 1,231,410]
gi|257830794|gb|EEV57401.1| cold-shock protein [Enterococcus faecium 1,231,408]
gi|260075037|gb|EEW63352.1| cold-shock protein [Enterococcus faecium C68]
gi|260076580|gb|EEW64344.1| cold-shock protein [Enterococcus faecium TC 6]
gi|289160477|gb|EFD08488.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
gi|291590877|gb|EFF22593.1| cold-shock protein [Enterococcus faecium E1636]
gi|291593803|gb|EFF25304.1| cold shock protein [Enterococcus faecium E1679]
gi|291598407|gb|EFF29481.1| cold shock protein [Enterococcus faecium U0317]
gi|291602028|gb|EFF32265.1| cold-shock protein [Enterococcus faecium E1039]
gi|291606250|gb|EFF35664.1| cold shock protein [Enterococcus faecium E1162]
gi|291608331|gb|EFF37632.1| cold-shock protein [Enterococcus faecium E980]
gi|313588742|gb|EFR67587.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|313591340|gb|EFR70185.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|313595563|gb|EFR74408.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|313598820|gb|EFR77665.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|313640602|gb|EFS05182.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|313643492|gb|EFS08072.1| major cold shock protein CspA [Enterococcus faecium TX0082]
Length = 66
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT E G+DVF+H SA+ G L EGQ VT+D +
Sbjct: 1 METGTVKWFNSEKGFGFITAEN----GNDVFVHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVTK 65
>gi|294498234|ref|YP_003561934.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295703585|ref|YP_003596660.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294348171|gb|ADE68500.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294801244|gb|ADF38310.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E G DVF+H SA+ S G +L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIEVE----GGSDVFVHFSAIQSEGYKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--PQAANVTKLS 67
>gi|289450032|ref|YP_003475336.1| cold-shock DNA-binding domain-containing protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184579|gb|ADC91004.1| cold-shock DNA-binding domain protein [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 70
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KGYGFI + GDD+F+H SA+ G L EGQ VT+D +
Sbjct: 1 MNTGTVKWFNDTKGYGFIANDN---GGDDLFVHFSAIRIDGFKTLKEGQKVTFDTEADPK 57
Query: 62 NG-KYSAENL 70
+ K A N+
Sbjct: 58 DPNKMRAVNV 67
>gi|331699456|ref|YP_004335695.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326954145|gb|AEA27842.1| cold-shock DNA-binding domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ + G L EG V ++
Sbjct: 1 MAQGTVKWFNSEKGYGFIATD----GGPDVFVHYSAIQADGFRTLDEGDRVEFETTAG-R 55
Query: 62 NGKYSAENLKLV 73
+G+ AE ++ +
Sbjct: 56 DGRSQAEAVRRI 67
>gi|226507970|ref|NP_001140374.1| hypothetical protein LOC100272427 [Zea mays]
gi|194699220|gb|ACF83694.1| unknown [Zea mays]
Length = 395
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + + D
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|170696311|ref|ZP_02887442.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|170138792|gb|EDT06989.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + S G +L E Q V+++ Q
Sbjct: 1 MPTGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIRSEGFKSLQENQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++K +
Sbjct: 58 GK--QAADIKPI 67
>gi|167564263|ref|ZP_02357179.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
EO147]
gi|167571414|ref|ZP_02364288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
C6786]
Length = 67
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPEG G+D+F H S + S G L E Q V ++
Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRSEGFKTLQENQKVEFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|320527168|ref|ZP_08028355.1| major cold shock protein CspA [Solobacterium moorei F0204]
gi|320132496|gb|EFW25039.1| major cold shock protein CspA [Solobacterium moorei F0204]
Length = 66
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT + G DVF+H SA+ S G L EG V++D +++
Sbjct: 1 MATGKVKWFNAEKGYGFITTD----EGKDVFVHYSAIQSEGFKTLDEGAAVSFDITESNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNVTKL 66
>gi|116326593|ref|YP_796514.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
subsp. cremoris SK11]
gi|190571792|ref|YP_001966471.1| CSPD [Lactococcus lactis]
gi|281491666|ref|YP_003353646.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|76574948|gb|ABA47417.1| cold shock protein D [Lactococcus lactis]
gi|108736191|gb|ABG00320.1| CSPD [Lactococcus lactis]
gi|116108961|gb|ABJ74083.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
cremoris SK11]
gi|281375384|gb|ADA64897.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
Length = 66
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G D+F H SA+ S G L EGQ V +D +
Sbjct: 1 MANGTVKWFNADKGFGFITSE----EGKDLFAHFSAIQSDGFKTLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNITK 65
>gi|298291124|ref|YP_003693063.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296927635|gb|ADH88444.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 71
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFI P+G+ G DVF+H SAV +GL L +G+ V+++ + +
Sbjct: 4 QTGTVKWFNDQKGYGFIQPDGA---GKDVFVHISAVQRSGLQGLRDGEKVSFELQTDQRS 60
Query: 63 GKYSAENLKL 72
GK SA NL++
Sbjct: 61 GKTSAVNLRV 70
>gi|289522213|ref|ZP_06439067.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504049|gb|EFD25213.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V+++ VQ
Sbjct: 1 MKTQGTVKWFNESKGYGFITAD----GGKDVFVHYSAIQQDGFKTLAEGQRVSFEIVQGS 56
Query: 61 ANGKYSAENLKLV 73
A + +
Sbjct: 57 KG--PQASEVSAL 67
>gi|256375184|ref|YP_003098844.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
gi|255919487|gb|ACU34998.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length = 68
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N +KG+GFI+P+ G DVF+H S + G L E Q V ++ Q
Sbjct: 1 MAVQGTVKWFNAEKGFGFISPDN---GGADVFVHYSEIQVNGYRTLEENQRVEFEIGQGQ 57
Query: 61 ANGKYSAE 68
+ A
Sbjct: 58 KGPQAQAV 65
>gi|91777186|ref|YP_552394.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|91689846|gb|ABE33044.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
Length = 77
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S V +G +L E Q VT++ Q
Sbjct: 11 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEVQGSGFKSLQENQKVTFEVKQGPK 67
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 68 GK--QAANIQP 76
>gi|227551933|ref|ZP_03981982.1| cold-shock protein [Enterococcus faecium TX1330]
gi|257886902|ref|ZP_05666555.1| cold-shock protein [Enterococcus faecium 1,141,733]
gi|257895473|ref|ZP_05675126.1| cold-shock protein [Enterococcus faecium Com12]
gi|257898089|ref|ZP_05677742.1| cold-shock protein [Enterococcus faecium Com15]
gi|293378339|ref|ZP_06624508.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
gi|293568617|ref|ZP_06679932.1| cold-shock protein [Enterococcus faecium E1071]
gi|227178934|gb|EEI59906.1| cold-shock protein [Enterococcus faecium TX1330]
gi|257822956|gb|EEV49888.1| cold-shock protein [Enterococcus faecium 1,141,733]
gi|257832038|gb|EEV58459.1| cold-shock protein [Enterococcus faecium Com12]
gi|257836001|gb|EEV61075.1| cold-shock protein [Enterococcus faecium Com15]
gi|291588577|gb|EFF20410.1| cold-shock protein [Enterococcus faecium E1071]
gi|292643203|gb|EFF61344.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
Length = 66
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT E G+DVF+H SA+ G L EGQ VT+D +
Sbjct: 1 METGTVKWFNSEKGFGFITAEN----GNDVFVHFSAIQGDGFKTLEEGQTVTFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVTK 65
>gi|187479893|ref|YP_787918.1| cold shock protein [Bordetella avium 197N]
gi|115424480|emb|CAJ51034.1| cold shock protein [Bordetella avium 197N]
Length = 68
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V +D
Sbjct: 1 MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFDVKDGP 57
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 58 KG--PQAAEIRPL 68
>gi|150376596|ref|YP_001313192.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|307315623|ref|ZP_07595160.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307321715|ref|ZP_07601104.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|150031143|gb|ABR63259.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|306892612|gb|EFN23409.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306898690|gb|EFN29353.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 69
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ ++Y+ +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIEPDN---GGADAFVHISAVERAGMREIVEGQKLSYELERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|330875784|gb|EGH09933.1| cold shock domain family protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 92
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V++D +Q
Sbjct: 1 MLYGKVKWFNNAKGYGFILEDGKP--DEDLFAHFSAIQMDGYKTLKAGQPVSFDIIQGPK 58
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 59 G--LHAVNIQ 66
>gi|29375934|ref|NP_815088.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
gi|227518631|ref|ZP_03948680.1| cold-shock protein [Enterococcus faecalis TX0104]
gi|227553162|ref|ZP_03983211.1| cold-shock protein [Enterococcus faecalis HH22]
gi|229545951|ref|ZP_04434676.1| cold-shock protein [Enterococcus faecalis TX1322]
gi|229550143|ref|ZP_04438868.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
gi|255972920|ref|ZP_05423506.1| cold-shock protein [Enterococcus faecalis T1]
gi|255975974|ref|ZP_05426560.1| cold-shock protein [Enterococcus faecalis T2]
gi|256618947|ref|ZP_05475793.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
gi|256762374|ref|ZP_05502954.1| cold-shock protein [Enterococcus faecalis T3]
gi|256853004|ref|ZP_05558374.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
gi|256958857|ref|ZP_05563028.1| cold-shock protein [Enterococcus faecalis DS5]
gi|256962049|ref|ZP_05566220.1| cold-shock protein [Enterococcus faecalis Merz96]
gi|256965247|ref|ZP_05569418.1| cold-shock protein [Enterococcus faecalis HIP11704]
gi|257078889|ref|ZP_05573250.1| cold-shock protein [Enterococcus faecalis JH1]
gi|257082664|ref|ZP_05577025.1| cold-shock domain-containing protein [Enterococcus faecalis
E1Sol]
gi|257085373|ref|ZP_05579734.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
gi|257086868|ref|ZP_05581229.1| cold-shock protein [Enterococcus faecalis D6]
gi|257089761|ref|ZP_05584122.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257415977|ref|ZP_05592971.1| cold-shock protein [Enterococcus faecalis AR01/DG]
gi|257419179|ref|ZP_05596173.1| cold-shock protein [Enterococcus faecalis T11]
gi|257422743|ref|ZP_05599733.1| cold shock protein [Enterococcus faecalis X98]
gi|293383071|ref|ZP_06628989.1| conserved domain protein [Enterococcus faecalis R712]
gi|293387776|ref|ZP_06632320.1| conserved domain protein [Enterococcus faecalis S613]
gi|294779559|ref|ZP_06744953.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
PC1.1]
gi|300860884|ref|ZP_07106971.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11]
gi|307271144|ref|ZP_07552427.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|307273351|ref|ZP_07554596.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|307277496|ref|ZP_07558588.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|307279174|ref|ZP_07560232.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
gi|307288138|ref|ZP_07568148.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
gi|307291351|ref|ZP_07571235.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|312900628|ref|ZP_07759925.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
gi|312904110|ref|ZP_07763278.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|312907339|ref|ZP_07766330.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
gi|312909956|ref|ZP_07768804.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
gi|312952370|ref|ZP_07771245.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|29343396|gb|AAO81158.1| cold-shock domain family protein [Enterococcus faecalis V583]
gi|227073926|gb|EEI11889.1| cold-shock protein [Enterococcus faecalis TX0104]
gi|227177688|gb|EEI58660.1| cold-shock protein [Enterococcus faecalis HH22]
gi|229304729|gb|EEN70725.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
gi|229308914|gb|EEN74901.1| cold-shock protein [Enterococcus faecalis TX1322]
gi|255963938|gb|EET96414.1| cold-shock protein [Enterococcus faecalis T1]
gi|255968846|gb|EET99468.1| cold-shock protein [Enterococcus faecalis T2]
gi|256598474|gb|EEU17650.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
gi|256683625|gb|EEU23320.1| cold-shock protein [Enterococcus faecalis T3]
gi|256711463|gb|EEU26501.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
gi|256949353|gb|EEU65985.1| cold-shock protein [Enterococcus faecalis DS5]
gi|256952545|gb|EEU69177.1| cold-shock protein [Enterococcus faecalis Merz96]
gi|256955743|gb|EEU72375.1| cold-shock protein [Enterococcus faecalis HIP11704]
gi|256986919|gb|EEU74221.1| cold-shock protein [Enterococcus faecalis JH1]
gi|256990694|gb|EEU77996.1| cold-shock domain-containing protein [Enterococcus faecalis
E1Sol]
gi|256993403|gb|EEU80705.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
gi|256994898|gb|EEU82200.1| cold-shock protein [Enterococcus faecalis D6]
gi|256998573|gb|EEU85093.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257157805|gb|EEU87765.1| cold-shock protein [Enterococcus faecalis ARO1/DG]
gi|257161007|gb|EEU90967.1| cold-shock protein [Enterococcus faecalis T11]
gi|257164567|gb|EEU94527.1| cold shock protein [Enterococcus faecalis X98]
gi|291079736|gb|EFE17100.1| conserved domain protein [Enterococcus faecalis R712]
gi|291082846|gb|EFE19809.1| conserved domain protein [Enterococcus faecalis S613]
gi|294453349|gb|EFG21757.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
PC1.1]
gi|295112888|emb|CBL31525.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
gi|300849923|gb|EFK77673.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11]
gi|306497582|gb|EFM67115.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|306500874|gb|EFM70192.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
gi|306504299|gb|EFM73511.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
gi|306505761|gb|EFM74939.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|306509878|gb|EFM78903.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|306512642|gb|EFM81291.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|310626367|gb|EFQ09650.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
gi|310629754|gb|EFQ13037.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|310632586|gb|EFQ15869.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|311289914|gb|EFQ68470.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
gi|311292109|gb|EFQ70665.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
gi|315027392|gb|EFT39324.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
gi|315030013|gb|EFT41945.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
gi|315033768|gb|EFT45700.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
gi|315036854|gb|EFT48786.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
gi|315145675|gb|EFT89691.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
gi|315147863|gb|EFT91879.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
gi|315150659|gb|EFT94675.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
gi|315153333|gb|EFT97349.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
gi|315155889|gb|EFT99905.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
gi|315157943|gb|EFU01960.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
gi|315160238|gb|EFU04255.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
gi|315164246|gb|EFU08263.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
gi|315166660|gb|EFU10677.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
gi|315170056|gb|EFU14073.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
gi|315174446|gb|EFU18463.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
gi|315575578|gb|EFU87769.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
gi|315578455|gb|EFU90646.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
gi|315579980|gb|EFU92171.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
gi|323480602|gb|ADX80041.1| Major cold shock protein, CspB [Enterococcus faecalis 62]
gi|327535008|gb|AEA93842.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
gi|329571445|gb|EGG53132.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
Length = 66
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G+DVF+H SA+ G L EGQ VT++ +
Sbjct: 1 METGTVKWFNSDKGFGFITAEN----GNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVTK 65
>gi|289643269|ref|ZP_06475394.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
gi|289506909|gb|EFD27883.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H SA+ G +L EGQ V + Q
Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 58 G--PQADAVRVV 67
>gi|217969795|ref|YP_002355029.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
gi|217507122|gb|ACK54133.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE GDD+F H SA+ G L EGQ VT+D
Sbjct: 1 MANGTVKWFNDSKGFGFITPE---AGGDDLFAHFSAIQGQGFKTLAEGQRVTFDVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 G--LQASNIR 65
>gi|320161036|ref|YP_004174260.1| cold shock protein [Anaerolinea thermophila UNI-1]
gi|319994889|dbj|BAJ63660.1| cold shock protein [Anaerolinea thermophila UNI-1]
Length = 72
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI + + GDDVF+H SA+ G L EGQ V ++ Q
Sbjct: 4 RYTGTVKWFNATKGYGFIGRDDNA--GDDVFVHFSAIQMEGYRTLKEGQKVEFEIEQGPK 61
Query: 62 NGKYSAENLKLVP 74
A + +
Sbjct: 62 G--LQAAQVVPLS 72
>gi|33598908|ref|NP_886551.1| putative cold shock-like protein [Bordetella parapertussis 12822]
gi|33603987|ref|NP_891547.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
gi|33568963|emb|CAE35377.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
gi|33575038|emb|CAE39704.1| putative cold shock-like protein [Bordetella parapertussis]
Length = 68
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++
Sbjct: 1 MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 58 KG--PQAAEIRPL 68
>gi|218767948|ref|YP_002342460.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
gi|241758498|ref|ZP_04756617.1| cold-shock DNA-binding domain protein [Neisseria flavescens
SK114]
gi|121051956|emb|CAM08264.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
gi|241321333|gb|EER57481.1| cold-shock DNA-binding domain protein [Neisseria flavescens
SK114]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFDVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIQ 65
>gi|319898519|ref|YP_004158612.1| cold shock protein [Bartonella clarridgeiae 73]
gi|319402483|emb|CBI76026.1| cold shock protein [Bartonella clarridgeiae 73]
Length = 69
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H SAV +GL +L EGQ ++YD +Q+
Sbjct: 1 MSTGTVKWFNTTKGFGFIQPND---GSADVFVHISAVERSGLNDLNEGQKISYDVLQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK++A NL +
Sbjct: 58 SGKFAAGNLSAL 69
>gi|144899530|emb|CAM76394.1| Cold-shock protein, DNA-binding [Magnetospirillum gryphiswaldense
MSR-1]
Length = 70
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ +D F+H SAV +G+ +L EGQ + Y+ V +
Sbjct: 1 MATGTVKWFNAQKGFGFIAPDD---GSNDAFVHISAVERSGIGDLREGQKIGYELVADRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA+NLKLV
Sbjct: 58 SGKMSADNLKLV 69
>gi|295700731|ref|YP_003608624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|295439944|gb|ADG19113.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + ++G +L E Q V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIQASGFKSLQENQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQSI 67
>gi|71726094|gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum]
gi|323530566|gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ S G +L E Q V+++
Sbjct: 1 MATGIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QASNIQPI 67
>gi|270291153|ref|ZP_06197376.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
acidilactici 7_4]
gi|270280549|gb|EFA26384.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
acidilactici 7_4]
Length = 66
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D
Sbjct: 1 MEQGTVKWFNADKGFGFITRED----GSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESDR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAVNVEK 65
>gi|237749127|ref|ZP_04579607.1| cold-shock DNA-binding domain-containing protein [Oxalobacter
formigenes OXCC13]
gi|229380489|gb|EEO30580.1| cold-shock DNA-binding domain-containing protein [Oxalobacter
formigenes OXCC13]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE G+D+F H SA+ G L EGQ V ++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPED---GGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QASNIQSV 67
>gi|182436795|ref|YP_001824514.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239943459|ref|ZP_04695396.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|239989914|ref|ZP_04710578.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
gi|282860706|ref|ZP_06269772.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|291446930|ref|ZP_06586320.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|297192805|ref|ZP_06910203.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|326777390|ref|ZP_08236655.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178465311|dbj|BAG19831.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|282564442|gb|EFB69978.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|291349877|gb|EFE76781.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|297151505|gb|EFH31205.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|320009215|gb|ADW04065.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
gi|326657723|gb|EGE42569.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q+V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQVVNFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVTP 66
>gi|29830475|ref|NP_825109.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29607587|dbj|BAC71644.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 68
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVDFEISQGQK 56
Query: 62 NGKYSAENLKL 72
A+ ++L
Sbjct: 57 G--PQADMVRL 65
>gi|78067321|ref|YP_370090.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
383]
gi|107023458|ref|YP_621785.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|116690540|ref|YP_836163.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733881|ref|YP_001765828.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|254247419|ref|ZP_04940740.1| Cold shock protein [Burkholderia cenocepacia PC184]
gi|77968066|gb|ABB09446.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
gi|105893647|gb|ABF76812.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
AU 1054]
gi|116648629|gb|ABK09270.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
gi|124872195|gb|EAY63911.1| Cold shock protein [Burkholderia cenocepacia PC184]
gi|169817123|gb|ACA91706.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D VQ
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|256374377|ref|YP_003098037.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
gi|255918680|gb|ACU34191.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI +G G DVF+H +A+ ++G +L E Q VT++ Q
Sbjct: 1 MATGKVKWFNAEKGFGFIEQDG---GGPDVFVHFTAINASGYRSLEENQAVTFEVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN++
Sbjct: 58 G--PQAENVQP 66
>gi|119897425|ref|YP_932638.1| cold-shock protein [Azoarcus sp. BH72]
gi|119669838|emb|CAL93751.1| cold-shock protein [Azoarcus sp. BH72]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ G L EG+ V+++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|254253023|ref|ZP_04946341.1| Cold shock protein [Burkholderia dolosa AUO158]
gi|124895632|gb|EAY69512.1| Cold shock protein [Burkholderia dolosa AUO158]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S + G L EGQ V+Y+ +
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDN---GGDDLFAHFSEIRGDGFKTLAEGQKVSYETKKGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQASNITPL 67
>gi|291613435|ref|YP_003523592.1| cold-shock DNA-binding domain protein [Sideroxydans
lithotrophicus ES-1]
gi|291583547|gb|ADE11205.1| cold-shock DNA-binding domain protein [Sideroxydans
lithotrophicus ES-1]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ +G +L EGQ VT++ VQ
Sbjct: 1 MANGTVKWFNDAKGFGFITPDD---GSEDLFAHFSAINMSGFKSLKEGQKVTFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|94991342|ref|YP_599442.1| cold shock protein [Streptococcus pyogenes MGAS10270]
gi|94544850|gb|ABF34898.1| Cold shock protein [Streptococcus pyogenes MGAS10270]
Length = 69
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 3 MAQGTVKWFNAEKGFGFISAEN----GQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 58
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 59 G--PQAVNITKL 68
>gi|86157661|ref|YP_464446.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197123033|ref|YP_002134984.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|220917823|ref|YP_002493127.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85774172|gb|ABC81009.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196172882|gb|ACG73855.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|219955677|gb|ACL66061.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 66
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI+ E G+DVF+H +A+ G L EG+ V +D Q
Sbjct: 1 MALGTVKWFNDAKGYGFISQE----GGEDVFVHHTAIQMDGFRTLKEGERVEFDVTQGPK 56
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 57 G--LQAANVR 64
>gi|218677799|ref|ZP_03525696.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
Length = 69
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV AG+ +L +GQ ++Y+ V+++
Sbjct: 1 MSTGTVKWFNATKGYGFIQPDD---GAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67
>gi|237748947|ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes
OXCC13]
gi|229380309|gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes
OXCC13]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+DVF H SA+ S G +L E Q V+++
Sbjct: 1 MATGTVKWFNDSKGFGFITPD---EGGEDVFAHFSAIKSDGFKSLKENQRVSFEVTTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 58 GK--QAANIDVI 67
>gi|116695961|ref|YP_841537.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|113530460|emb|CAJ96807.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
Length = 67
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITP+ G D+F H S + G +L EG V ++ Q
Sbjct: 1 MATGIVKWFNSEKGYGFITPDD---GGKDLFAHHSEIQGTGFKSLEEGARVEFEVTQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQASKIRPL 67
>gi|332526271|ref|ZP_08402400.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
gi|332110105|gb|EGJ10733.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
Length = 79
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G DVF H SAV G L +G V ++ VQ
Sbjct: 1 MAVGTVKWFNDAKGFGFIEPEG---GGADVFAHFSAVQMDGFRTLKQGSRVEFELVQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A+N++ V ++
Sbjct: 58 GNL--AQNIRPVATAT 71
>gi|39936734|ref|NP_949010.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris CGA009]
gi|316933046|ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris DX-1]
gi|39650590|emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris
CGA009]
gi|315600760|gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 84
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V + +GK
Sbjct: 18 GTVKWFNATKGYGFIQPDD---GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 74
Query: 65 YSAENLK 71
SA+NL+
Sbjct: 75 SSADNLR 81
>gi|154245503|ref|YP_001416461.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154159588|gb|ABS66804.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 70
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G D F+H SAV AG+ +L EGQ V ++ V +
Sbjct: 1 MAEGTVKWFNAQKGFGFITPDS---GGSDAFVHISAVERAGMSDLREGQKVAFELVTDRK 57
Query: 62 NGKYSAENLK 71
+GK SA+ LK
Sbjct: 58 SGKLSADQLK 67
>gi|124267649|ref|YP_001021653.1| cold-shock DNA-binding protein family protein [Methylibium
petroleiphilum PM1]
gi|124260424|gb|ABM95418.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
PM1]
Length = 89
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+DVF H SA+ G L +G V+++ V
Sbjct: 1 MVNGTVKWFNDAKGFGFIEPEG---GGEDVFAHFSAILMDGFRTLKQGARVSFELVDGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A+N+ + ++
Sbjct: 58 GKL--AQNIAPLESRAD 72
>gi|13472379|ref|NP_103946.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|260467123|ref|ZP_05813302.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|319781908|ref|YP_004141384.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|14023125|dbj|BAB49732.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
gi|259029135|gb|EEW30432.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|317167796|gb|ADV11334.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 70
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFITP+G DVF+H SA+ ++GL L +GQ VT+D +
Sbjct: 1 MAQTGTVKFFNATKGFGFITPDG---GAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDR 57
Query: 61 ANGKYSAENLK 71
A NL+
Sbjct: 58 MGKGPKAVNLR 68
>gi|256391325|ref|YP_003112889.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256357551|gb|ACU71048.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 69
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI +G G DVF+H SA+ +G NL E Q V ++ Q
Sbjct: 1 MATGTVKWFNGEKGYGFIAQDG---GGPDVFVHFSAIEGSGYRNLEENQPVEFEITQGPK 57
Query: 62 NGKYSAENLKLVPK 75
AE ++ + +
Sbjct: 58 G--PQAEKVRALAQ 69
>gi|325274567|ref|ZP_08140625.1| cold-shock protein [Pseudomonas sp. TJI-51]
gi|324100294|gb|EGB98082.1| cold-shock protein [Pseudomonas sp. TJI-51]
Length = 197
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185
Query: 64 KYSAENLKLV 73
AE++ V
Sbjct: 186 -LQAEDVVAV 194
>gi|167035202|ref|YP_001670433.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida GB-1]
gi|166861690|gb|ABZ00098.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
Length = 197
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185
Query: 64 KYSAENLKLV 73
AE++ V
Sbjct: 186 -LQAEDVVAV 194
>gi|91783753|ref|YP_558959.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|187924184|ref|YP_001895826.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|296163324|ref|ZP_06846084.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|91687707|gb|ABE30907.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|187715378|gb|ACD16602.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|295886416|gb|EFG66274.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + S G +L E Q V+++ Q
Sbjct: 1 MPTGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIRSEGFKSLQENQKVSFEIKQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++K V
Sbjct: 58 GK--QAADIKPV 67
>gi|50915110|ref|YP_061082.1| cold shock protein [Streptococcus pyogenes MGAS10394]
gi|50904184|gb|AAT87899.1| Cold shock protein [Streptococcus pyogenes MGAS10394]
Length = 69
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ ++G L EGQ V +D +
Sbjct: 3 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQR 58
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 59 G--PQAVNITKL 68
>gi|300312332|ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum
seropedicae SmR1]
gi|300075117|gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum
seropedicae SmR1]
Length = 68
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ S G +L E Q V+++
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 GK--QASNI 64
>gi|325529192|gb|EGD06159.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. TJI49]
Length = 67
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ +
Sbjct: 1 MDTGTVKWFNDTKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQASNITPL 67
>gi|289628626|ref|ZP_06461580.1| cold-shock protein [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289651512|ref|ZP_06482855.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|330868605|gb|EGH03314.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 202
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNASKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|116335083|ref|YP_802578.1| cold shock protein [Candidatus Carsonella ruddii PV]
gi|116235364|dbj|BAF35212.1| cold shock protein [Candidatus Carsonella ruddii PV]
Length = 67
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ GDD+F+H S + G +L +GQ V++D Q
Sbjct: 1 MSNGTVKWFNDTKGFGFISPDD---GGDDLFVHFSEIRVDGFKSLQDGQRVSFDVTQGKK 57
Query: 62 NGKYSAENLKLV 73
A N+K++
Sbjct: 58 G--LQASNVKVI 67
>gi|255505169|ref|ZP_05344871.3| putative cold shock protein [Bryantella formatexigens DSM 14469]
gi|255269407|gb|EET62612.1| putative cold shock protein [Bryantella formatexigens DSM 14469]
Length = 91
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD +
Sbjct: 26 MNKGTVKWFNAEKGYGFITGED----GADVFVHFSAIQGEGFKSLEEGQAVSYDLTEGAR 81
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 82 G--MQAANVVKL 91
>gi|317401626|gb|EFV82252.1| cold shock protein [Achromobacter xylosoxidans C54]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++
Sbjct: 1 MAQKGKVKWFNADKGYGFITPD---AGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 58 KG--PQAAEIRPL 68
>gi|86749607|ref|YP_486103.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris HaA2]
gi|86572635|gb|ABD07192.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLKL
Sbjct: 56 RGKTSAENLKL 66
>gi|117927601|ref|YP_872152.1| cold-shock DNA-binding protein family protein [Acidothermus
cellulolyticus 11B]
gi|117648064|gb|ABK52166.1| cold-shock DNA-binding protein family [Acidothermus
cellulolyticus 11B]
Length = 92
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N +KG+GFI + G DVF+H +A+ G L + Q V ++ VQ
Sbjct: 26 AQGTVKWFNAEKGFGFIAVD----GGQDVFVHYTAIQMEGYKTLDQNQRVEFEIVQGQKG 81
Query: 63 GKYSAENLKLVPK 75
A+ ++ +
Sbjct: 82 --PQADAVRPLSS 92
>gi|116669342|ref|YP_830275.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
FB24]
gi|116609451|gb|ABK02175.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFIT +GS GDDVF+H SA+ G L EGQ V ++ + +
Sbjct: 1 MALGTVKWFNAEKGYGFITVDGS---GDDVFVHWSAIEREGYRALDEGQRVQFEVGEGEK 57
Query: 62 NGKYSAENLK 71
AEN++
Sbjct: 58 G--PQAENVR 65
>gi|45441055|ref|NP_992594.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
gi|51595732|ref|YP_069923.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
gi|108806653|ref|YP_650569.1| cold shock-like protein [Yersinia pestis Antiqua]
gi|108812775|ref|YP_648542.1| cold shock-like protein [Yersinia pestis Nepal516]
gi|145599602|ref|YP_001163678.1| cold shock-like protein [Yersinia pestis Pestoides F]
gi|149366623|ref|ZP_01888657.1| cold shock-like protein [Yersinia pestis CA88-4125]
gi|153950801|ref|YP_001401574.1| cold shock domain-containing protein CspD [Yersinia
pseudotuberculosis IP 31758]
gi|162421201|ref|YP_001606104.1| cold shock domain-containing protein CspD [Yersinia pestis
Angola]
gi|165924529|ref|ZP_02220361.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165938992|ref|ZP_02227545.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009852|ref|ZP_02230750.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211633|ref|ZP_02237668.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399962|ref|ZP_02305480.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419873|ref|ZP_02311626.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167424253|ref|ZP_02316006.1| cold shock domain protein CspD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167469765|ref|ZP_02334469.1| cold shock domain protein CspD [Yersinia pestis FV-1]
gi|170024919|ref|YP_001721424.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186894809|ref|YP_001871921.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|218928514|ref|YP_002346389.1| cold shock-like protein [Yersinia pestis CO92]
gi|229841332|ref|ZP_04461491.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229843436|ref|ZP_04463582.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229895809|ref|ZP_04510979.1| cold shock-like protein [Yersinia pestis Pestoides A]
gi|229903189|ref|ZP_04518302.1| cold shock-like protein [Yersinia pestis Nepal516]
gi|270486982|ref|ZP_06204056.1| cold shock domain protein CspD [Yersinia pestis KIM D27]
gi|45435914|gb|AAS61471.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
gi|51589014|emb|CAH20632.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
gi|108776423|gb|ABG18942.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108778566|gb|ABG12624.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115347125|emb|CAL20018.1| cold shock-like protein [Yersinia pestis CO92]
gi|145211298|gb|ABP40705.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149290997|gb|EDM41072.1| cold shock-like protein [Yersinia pestis CA88-4125]
gi|152962296|gb|ABS49757.1| cold shock domain protein CspD [Yersinia pseudotuberculosis IP
31758]
gi|162354016|gb|ABX87964.1| cold shock domain protein CspD [Yersinia pestis Angola]
gi|165913139|gb|EDR31763.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
str. IP275]
gi|165923589|gb|EDR40721.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991248|gb|EDR43549.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166207404|gb|EDR51884.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962614|gb|EDR58635.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167050670|gb|EDR62078.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057102|gb|EDR66865.1| cold shock domain protein CspD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751453|gb|ACA68971.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186697835|gb|ACC88464.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229678959|gb|EEO75062.1| cold shock-like protein [Yersinia pestis Nepal516]
gi|229689783|gb|EEO81844.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229697698|gb|EEO87745.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700732|gb|EEO88761.1| cold shock-like protein [Yersinia pestis Pestoides A]
gi|270335486|gb|EFA46263.1| cold shock domain protein CspD [Yersinia pestis KIM D27]
gi|320015779|gb|ADV99350.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 87
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D +
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQIVNFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|258541245|ref|YP_003186678.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|329114852|ref|ZP_08243608.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
gi|256632323|dbj|BAH98298.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01]
gi|256635380|dbj|BAI01349.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-03]
gi|256638435|dbj|BAI04397.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-07]
gi|256641489|dbj|BAI07444.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-22]
gi|256644544|dbj|BAI10492.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-26]
gi|256647599|dbj|BAI13540.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-32]
gi|256650652|dbj|BAI16586.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653643|dbj|BAI19570.1| transcriptional regulator cold shock protein DNA-binding protein
[Acetobacter pasteurianus IFO 3283-12]
gi|326695749|gb|EGE47434.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI P+ G D F+H S + AG+ LTEGQ V+Y+ +
Sbjct: 1 MATGTVKWFNPTKGFGFIQPDN---GGQDAFVHISELERAGMHTLTEGQQVSYEL-EAGR 56
Query: 62 NGKYSAENLKLV 73
NGK SA ++K +
Sbjct: 57 NGKTSAVSIKAI 68
>gi|190575401|ref|YP_001973246.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
gi|194366737|ref|YP_002029347.1| cold-shock DNA-binding domain-containing protein
[Stenotrophomonas maltophilia R551-3]
gi|254524874|ref|ZP_05136929.1| putative 'Cold-shock' DNA-binding domain protein
[Stenotrophomonas sp. SKA14]
gi|190013323|emb|CAQ46957.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
gi|194349541|gb|ACF52664.1| cold-shock DNA-binding domain protein [Stenotrophomonas
maltophilia R551-3]
gi|219722465|gb|EED40990.1| putative 'Cold-shock' DNA-binding domain protein
[Stenotrophomonas sp. SKA14]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+PE DVF H SA+ S G +L EGQ VTYD Q
Sbjct: 1 MPNGTVKWFNDAKGFGFISPED---GSADVFAHFSAINSKGFRSLQEGQRVTYDVTQGPK 57
Query: 62 NGKYSAENLKLVP 74
A N+
Sbjct: 58 G--AQASNITPAE 68
>gi|145595639|ref|YP_001159936.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
gi|159038893|ref|YP_001538146.1| cold-shock DNA-binding domain-containing protein [Salinispora
arenicola CNS-205]
gi|145304976|gb|ABP55558.1| cold-shock DNA-binding protein family [Salinispora tropica
CNB-440]
gi|157917728|gb|ABV99155.1| cold-shock DNA-binding domain protein [Salinispora arenicola
CNS-205]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H S+++ +G L+EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGPDVFVHYSSISMSGYRELSEGQKVDFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
A+N++
Sbjct: 58 G--PQADNVRP 66
>gi|56477977|ref|YP_159566.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
gi|56314020|emb|CAI08665.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ G L EG+ V+++ Q
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|329889214|ref|ZP_08267557.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
ATCC 11568]
gi|328844515|gb|EGF94079.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
ATCC 11568]
Length = 70
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL L E Q V+Y+ ++
Sbjct: 1 MATGTVKWFNSTKGYGFIQPDD---GGKDVFVHISAVEQAGLRGLDENQKVSYEIERDRR 57
Query: 62 NGKYSAENLK 71
+GK SA LK
Sbjct: 58 SGKESAGQLK 67
>gi|224824174|ref|ZP_03697282.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
gi|224603593|gb|EEG09768.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E GDD+F H S + + G L E Q V++D
Sbjct: 1 MATGTVKWFNDSKGFGFITPD---EGGDDIFAHFSQIKANGFKTLAENQRVSFDVTMGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QASNIQPL 67
>gi|72383849|ref|YP_293203.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72123192|gb|AAZ65346.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S V +G +L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDTKGFGFITPDD---GGDDLFAHFSEVQGSGFKSLQEGQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++K +
Sbjct: 58 GK--QAASIKPL 67
>gi|116493183|ref|YP_804918.1| cold-shock DNA-binding protein family protein [Pediococcus
pentosaceus ATCC 25745]
gi|116103333|gb|ABJ68476.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus
ATCC 25745]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFIT E G DVF+H SA+ G L EGQ V++D ++D
Sbjct: 1 MEQGTVKWFNADKGFGFITRED----GSDVFVHFSAIQGDGFKTLEEGQAVSFDVEESDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|241202847|ref|YP_002973943.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240856737|gb|ACS54404.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 69
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ GDD F+H SAV AG+ L EGQ + +D +++
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDN---GGDDAFVHISAVERAGMRELVEGQKIGFDLERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|297565415|ref|YP_003684387.1| cold-shock DNA-binding domain-containing protein [Meiothermus
silvanus DSM 9946]
gi|296849864|gb|ADH62879.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM
9946]
Length = 74
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E DVF+H SA+ S G L EG +V +D
Sbjct: 1 MAKGKVKWFNAEKGFGFIERE----GDTDVFVHYSAIQSKGFRTLNEGDVVEFDVEPGKN 56
Query: 62 NGKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 57 GKGPQAANVNVVEAA 71
>gi|302530604|ref|ZP_07282946.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302439499|gb|EFL11315.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI + G DVF+H SA+ + G L EG V ++ Q+
Sbjct: 1 MAVGTVKWFNSEKGYGFIE----SPEGPDVFVHYSAIQADGFRTLDEGDRVEFEV-QSGR 55
Query: 62 NGKYSAENLKLV 73
+G+ A +++ V
Sbjct: 56 DGRSQAADVRKV 67
>gi|94984745|ref|YP_604109.1| cold-shock DNA-binding domain-containing protein [Deinococcus
geothermalis DSM 11300]
gi|94555026|gb|ABF44940.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis
DSM 11300]
Length = 87
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI EGS +DVF H SA+ + G L EG V ++
Sbjct: 1 MAVGKVKWFNAEKGYGFIETEGS----EDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQR 56
Query: 62 NGKYSAENLKLVPKSS 77
A N+ + +
Sbjct: 57 GKGPQARNIVVTKAAP 72
>gi|73539164|ref|YP_299531.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|94314737|ref|YP_587946.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
CH34]
gi|116693962|ref|YP_728173.1| cold-shock protein, DNA-binding [Ralstonia eutropha H16]
gi|188591849|ref|YP_001796447.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
gi|72122501|gb|AAZ64687.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
gi|93358589|gb|ABF12677.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
CH34]
gi|113528461|emb|CAJ94808.1| Cold-shock protein, DNA-binding [Ralstonia eutropha H16]
gi|170938223|emb|CAP63208.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G D+F H S + +G L +GQ VT++ Q
Sbjct: 1 MATGTVKWFNETKGFGFITPDD---GGADLFAHFSEIQGSGFKTLKDGQRVTFEVKQGPK 57
Query: 62 NGKYSAE 68
+ SA
Sbjct: 58 GLQASAI 64
>gi|315641419|ref|ZP_07896492.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
gi|315482806|gb|EFU73329.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
Length = 72
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E G DVF+H SA+ G L EGQ VT+D ++D
Sbjct: 7 MEQGTVKWFNAEKGFGFITRED----GSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESDR 62
Query: 62 NGKYSAENL 70
A N+
Sbjct: 63 G--PQATNV 69
>gi|293606230|ref|ZP_06688593.1| cold shock transcription regulator protein [Achromobacter
piechaudii ATCC 43553]
gi|292815377|gb|EFF74495.1| cold shock transcription regulator protein [Achromobacter
piechaudii ATCC 43553]
gi|317407692|gb|EFV87625.1| cold-shock protein [Achromobacter xylosoxidans C54]
Length = 81
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V ++ +Q
Sbjct: 17 TGTVKWFNDAKGFGFITPDD---GGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQGPKGK 73
Query: 64 KYSAENLK 71
A N+
Sbjct: 74 --QALNIT 79
>gi|220933692|ref|YP_002512591.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995002|gb|ACL71604.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
HL-EbGR7]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE E G DVF+H SA+ + G L EGQ V++ Q
Sbjct: 1 MSTGIVKWFNESKGFGFIAPE---EGGADVFVHYSAIQAEGFKTLAEGQRVSFQVQQGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 G--LQAVNVTP 66
>gi|163856975|ref|YP_001631273.1| cold-shock protein [Bordetella petrii DSM 12804]
gi|163260703|emb|CAP43005.1| cold-shock protein [Bordetella petrii]
Length = 81
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V ++ +Q
Sbjct: 17 TGTVKWFNDAKGFGFITPDD---GGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQGPKGK 73
Query: 64 KYSAENLK 71
A N+
Sbjct: 74 --QALNIT 79
>gi|27382370|ref|NP_773899.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27355541|dbj|BAC52524.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ +G++KW+NP KGYGFI P G DVF+H SAV AGL L EGQ V Y+ + N
Sbjct: 1 MMAKGTVKWFNPTKGYGFIQPAS---GGKDVFVHISAVQKAGLSTLNEGQTVEYEEIAN- 56
Query: 61 ANGKYSAENLKL 72
GK SAENLK+
Sbjct: 57 -RGKTSAENLKV 67
>gi|332669153|ref|YP_004452161.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332338191|gb|AEE44774.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
484]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFITP G G D+F+H SA+ G L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGYGFITPTG---GGQDLFVHFSAIQVDGYRTLEEGQQVDFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
AE ++ V
Sbjct: 58 G--PQAEQVRPV 67
>gi|300933731|ref|ZP_07148987.1| putative cold shock protein [Corynebacterium resistens DSM 45100]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+N+ +
Sbjct: 58 G--PQAQNVTAL 67
>gi|220933359|ref|YP_002512258.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
HL-EbGR7]
gi|219994669|gb|ACL71271.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
HL-EbGR7]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G DVF+H SA++ +G L E Q V++D Q+
Sbjct: 1 MATGTVKWFNESKGFGFITPDD---GGKDVFVHFSAISGSGFKTLAENQKVSFDV-QDGP 56
Query: 62 NGKYSAENL 70
G +A +
Sbjct: 57 KGPQAANVV 65
>gi|331700983|ref|YP_004397942.1| cold-shock DNA-binding domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128326|gb|AEB72879.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri
NRRL B-30929]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT E G DVF+H SA+ + G L EGQ VT D +D
Sbjct: 1 MEQGTVKWFNGDKGYGFITLED----GKDVFVHFSAINADGYKTLEEGQKVTLDVEDSDR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +V
Sbjct: 57 G--PQAANVTVVE 67
>gi|327441552|dbj|BAK17917.1| cold shock protein [Solibacillus silvestris StLB046]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V +D + +
Sbjct: 1 MQQGTVKWFNSEKGFGFIEVE----GGNDVFVHFSAIQGEGFKTLDEGQKVEFDVEEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVTKL 66
>gi|311107315|ref|YP_003980168.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
gi|310762004|gb|ADP17453.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
Length = 94
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V ++ +Q
Sbjct: 30 TGTVKWFNDAKGFGFITPDD---GGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQGPKGK 86
Query: 64 KYSAENLK 71
A N+
Sbjct: 87 --QALNIT 92
>gi|13095918|ref|NP_076827.1| Csp [Lactococcus phage bIL312]
gi|15672511|ref|NP_266685.1| cold shock protein D [Lactococcus lactis subsp. lactis Il1403]
gi|12723413|gb|AAK04627.1|AE006287_6 cold shock protein D [Lactococcus lactis subsp. lactis Il1403]
gi|12831129|gb|AAK08480.1|AF323673_27 Csp [Lactococcus phage bIL312]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G D+F H SA+ S G +L EGQ V +D +
Sbjct: 1 MANGTVKWFNADKGFGFITSE----EGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQAVNITK 65
>gi|92112688|ref|YP_572616.1| cold-shock DNA-binding protein family protein [Chromohalobacter
salexigens DSM 3043]
gi|91795778|gb|ABE57917.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens
DSM 3043]
Length = 155
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFIT + SG+DVF+H A+ G L EGQ V Y V+N+
Sbjct: 92 GEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENERG-- 145
Query: 65 YSAENLKLVP 74
A+++ ++
Sbjct: 146 LQADDVTVIS 155
>gi|86738977|ref|YP_479377.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
gi|111220090|ref|YP_710884.1| cold-shock protein [Frankia alni ACN14a]
gi|158318310|ref|YP_001510818.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|86565839|gb|ABD09648.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
gi|111147622|emb|CAJ59277.1| Cold-shock protein; nucleic acid-binding domain [Frankia alni
ACN14a]
gi|158113715|gb|ABW15912.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H SA+ G L EGQ V + Q
Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 58 G--PQADAVRVV 67
>gi|238020304|ref|ZP_04600730.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC
51147]
gi|237867284|gb|EEP68290.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC
51147]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIQ 65
>gi|134099636|ref|YP_001105297.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291005458|ref|ZP_06563431.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133912259|emb|CAM02372.1| cold-shock DNA-binding domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ G DVF+H SA+ + G +L E Q V Y+ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPDD---GGPDVFVHYSAIDAGGFRSLEEDQRVNYEVTQGPK 57
Query: 62 NGKYSAENLKL 72
A ++++
Sbjct: 58 G--PQAASVRV 66
>gi|261404404|ref|YP_003240645.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|315644849|ref|ZP_07897978.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|329929715|ref|ZP_08283401.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
gi|261280867|gb|ACX62838.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
Y412MC10]
gi|315279791|gb|EFU43092.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|328935932|gb|EGG32391.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+ +
Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKTLDEGQRVEFNIVEGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|139474525|ref|YP_001129241.1| cold shock protein [Streptococcus pyogenes str. Manfredo]
gi|134272772|emb|CAM31047.1| cold shock protein [Streptococcus pyogenes str. Manfredo]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G D+F H SA+ + G L EGQ V +D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISTEN----GQDIFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNITKL 66
>gi|187477996|ref|YP_786020.1| cold shock-like protein [Bordetella avium 197N]
gi|115422582|emb|CAJ49107.1| cold shock-like protein [Bordetella avium 197N]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI P+ G D+F H S + S G +L E Q V+++ +
Sbjct: 1 MATGIVKWFNAEKGYGFILPDD---GGKDLFAHYSEIRSEGYKSLQENQRVSFEIGEGPK 57
Query: 62 NGKYSAENLKLV 73
SA+++K++
Sbjct: 58 G--PSAKDIKVI 67
>gi|326407203|gb|ADZ64274.1| cold shock protein ,beta-ribbon, CspA family [Lactococcus lactis
subsp. lactis CV56]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ E G D+F H SA+ S G +L EGQ V +D +
Sbjct: 1 MANGTVKWFNATKGFGFISSED----GQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQAVNITK 65
>gi|319441307|ref|ZP_07990463.1| putative cold shock protein [Corynebacterium variabile DSM 44702]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ D+F+H SA+ S+G +L E Q V+++
Sbjct: 1 MSTGTVKWFNAEKGFGFIAPDD---GSSDIFVHYSAIQSSGFRSLEEDQKVSFEVEAGAK 57
Query: 62 NGKYSAENLKLV 73
+A ++ ++
Sbjct: 58 G--PAAADVTVL 67
>gi|293401962|ref|ZP_06646102.1| conserved domain protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291304620|gb|EFE45869.1| conserved domain protein [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 66
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT + G DVF+H S++ S G L EGQ V++D V +D
Sbjct: 1 MSTGKVKWFNAEKGYGFITSD----EGKDVFVHYSSIQSDGFRTLEEGQRVSFDVVDSDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--QQAANV 63
>gi|83592856|ref|YP_426608.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|83575770|gb|ABC22321.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H +AV AGL +L EGQ V ++ +
Sbjct: 1 MSTGTVKWFNGTKGYGFIEPDD---GSADVFVHITAVQQAGLDSLREGQKVAFEL-ERGR 56
Query: 62 NGKYSAENLKLV 73
+GK +A NLK +
Sbjct: 57 SGKMAASNLKPL 68
>gi|126739741|ref|ZP_01755432.1| cold shock family protein [Roseobacter sp. SK209-2-6]
gi|126718973|gb|EBA15684.1| cold shock family protein [Roseobacter sp. SK209-2-6]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ Q
Sbjct: 1 MATGTVKWFNTTKGYGFIAPED---GGKDVFVHISAVERSGLTGLADNQKVSYEL-QPGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +L L+
Sbjct: 57 DGRESAVDLALL 68
>gi|15676734|ref|NP_273879.1| cold-shock domain-contain protein [Neisseria meningitidis MC58]
gi|59800853|ref|YP_207565.1| CspA [Neisseria gonorrhoeae FA 1090]
gi|121634616|ref|YP_974861.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
gi|194098153|ref|YP_002001201.1| cold-shock domain family protein [Neisseria gonorrhoeae
NCCP11945]
gi|239998604|ref|ZP_04718528.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
gi|240013727|ref|ZP_04720640.1| transcriptional regulator [Neisseria gonorrhoeae DGI18]
gi|240016165|ref|ZP_04722705.1| transcriptional regulator [Neisseria gonorrhoeae FA6140]
gi|240080309|ref|ZP_04724852.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
gi|240112520|ref|ZP_04727010.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|240115260|ref|ZP_04729322.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|240117547|ref|ZP_04731609.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|240120797|ref|ZP_04733759.1| transcriptional regulator [Neisseria gonorrhoeae PID24-1]
gi|240123102|ref|ZP_04736058.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|240125353|ref|ZP_04738239.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
gi|240127806|ref|ZP_04740467.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|254493324|ref|ZP_05106495.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
gi|254804709|ref|YP_003082930.1| putative cold-shock protein [Neisseria meningitidis alpha14]
gi|260440922|ref|ZP_05794738.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
gi|268594462|ref|ZP_06128629.1| cold-shock domain-containing protein [Neisseria gonorrhoeae
35/02]
gi|268596458|ref|ZP_06130625.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19]
gi|268598590|ref|ZP_06132757.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|268600943|ref|ZP_06135110.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|268603250|ref|ZP_06137417.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|268681730|ref|ZP_06148592.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|268683957|ref|ZP_06150819.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
gi|268686202|ref|ZP_06153064.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|291044245|ref|ZP_06569954.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2]
gi|293399442|ref|ZP_06643595.1| cold shock protein (beta-ribbon, CspA family) [Neisseria
gonorrhoeae F62]
gi|298368622|ref|ZP_06979940.1| cold shock transcription regulator protein [Neisseria sp. oral
taxon 014 str. F0314]
gi|313668692|ref|YP_004048976.1| transcriptional regulator [Neisseria lactamica ST-640]
gi|319637942|ref|ZP_07992708.1| transcriptional regulator [Neisseria mucosa C102]
gi|7226073|gb|AAF41249.1| cold-shock domain family protein [Neisseria meningitidis MC58]
gi|59717748|gb|AAW89153.1| putative cold shock protein [Neisseria gonorrhoeae FA 1090]
gi|120866322|emb|CAM10063.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
gi|193933443|gb|ACF29267.1| cold-shock domain family protein [Neisseria gonorrhoeae
NCCP11945]
gi|226512364|gb|EEH61709.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
gi|254668251|emb|CBA05095.1| putative cold-shock protein [Neisseria meningitidis alpha14]
gi|254670465|emb|CBA06133.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha153]
gi|254672382|emb|CBA05647.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha275]
gi|261392810|emb|CAX50391.1| putative cold shock protein [Neisseria meningitidis 8013]
gi|268547851|gb|EEZ43269.1| cold-shock domain-containing protein [Neisseria gonorrhoeae
35/02]
gi|268550246|gb|EEZ45265.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19]
gi|268582721|gb|EEZ47397.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
gi|268585074|gb|EEZ49750.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
gi|268587381|gb|EEZ52057.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
gi|268622014|gb|EEZ54414.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
gi|268624241|gb|EEZ56641.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
gi|268626486|gb|EEZ58886.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
gi|291011139|gb|EFE03135.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2]
gi|291610011|gb|EFF39133.1| cold shock protein (beta-ribbon, CspA family) [Neisseria
gonorrhoeae F62]
gi|298282625|gb|EFI24112.1| cold shock transcription regulator protein [Neisseria sp. oral
taxon 014 str. F0314]
gi|308389012|gb|ADO31332.1| cold-shock domain-containing protein [Neisseria meningitidis
alpha710]
gi|309379406|emb|CBX21973.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006154|emb|CBN87615.1| putative transcriptional regulator [Neisseria lactamica 020-06]
gi|317401097|gb|EFV81752.1| transcriptional regulator [Neisseria mucosa C102]
gi|319410197|emb|CBY90535.1| putative cold shock protein [Neisseria meningitidis WUE 2594]
gi|325127943|gb|EGC50845.1| cold-shock DNA-binding domain protein [Neisseria meningitidis
N1568]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIQ 65
>gi|77462572|ref|YP_352076.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|126461506|ref|YP_001042620.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|221638430|ref|YP_002524692.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|332557457|ref|ZP_08411779.1| cold shock protein [Rhodobacter sphaeroides WS8N]
gi|77386990|gb|ABA78175.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
gi|126103170|gb|ABN75848.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17029]
gi|221159211|gb|ACM00191.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|332275169|gb|EGJ20484.1| cold shock protein [Rhodobacter sphaeroides WS8N]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H SA+ AG+ L +GQ VT+D + D
Sbjct: 1 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHISALERAGIRQLNDGQAVTFDL-ETDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLAL 67
>gi|313679366|ref|YP_004057105.1| cold-shock DNA-binding protein family [Oceanithermus profundus
DSM 14977]
gi|313152081|gb|ADR35932.1| cold-shock DNA-binding protein family [Oceanithermus profundus
DSM 14977]
Length = 71
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E G DVF+H SA+ S+G L EG +V ++
Sbjct: 1 MEKGKVKWFNAEKGYGFIERE----GGSDVFVHFSAINSSGFRTLNEGDVVEFEVEDGPK 56
Query: 62 NGKYSAENLKLVPKSS 77
SA N+ +V +
Sbjct: 57 G--PSAANVTVVESAG 70
>gi|300790362|ref|YP_003770653.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|299799876|gb|ADJ50251.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI + G DVF+H SA+ S G L EG V ++ Q+
Sbjct: 1 MAVGTVKWFNSEKGYGFIE----STEGPDVFVHYSAIQSEGFRTLDEGDRVEFEV-QSGR 55
Query: 62 NGKYSAENLKLVP 74
+G+ A +++ V
Sbjct: 56 DGRSQAADVRKVS 68
>gi|316933716|ref|YP_004108698.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris DX-1]
gi|315601430|gb|ADU43965.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55
Query: 62 NGKYSAENLKL 72
G+ SAENLK+
Sbjct: 56 RGRTSAENLKI 66
>gi|291296663|ref|YP_003508061.1| cold-shock DNA-binding domain-containing protein [Meiothermus
ruber DSM 1279]
gi|290471622|gb|ADD29041.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM
1279]
Length = 68
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFI E SG DVF+H +A+ G +L EG V ++
Sbjct: 1 MNKGTVKWFNAEKGYGFIAQE----SGPDVFVHFTAIQGQGFKSLNEGDRVEFEIEPGKN 56
Query: 62 NGKYSAENLKL 72
A+N+KL
Sbjct: 57 GKGPQAKNVKL 67
>gi|197106226|ref|YP_002131603.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
gi|196479646|gb|ACG79174.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 69
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ ++++ ++
Sbjct: 1 MTSGTVKWFNATKGFGFIQPDD---GGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKSAAANLQ 67
>gi|73918922|sp|Q5X9L4|CSPA_STRP6 RecName: Full=Major cold shock protein
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ ++G L EGQ V +D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNITKL 66
>gi|28896678|ref|NP_803028.1| cold shock protein [Streptococcus pyogenes SSI-1]
gi|71904413|ref|YP_281216.1| cold shock protein [Streptococcus pyogenes MGAS6180]
gi|71911578|ref|YP_283128.1| cold shock protein [Streptococcus pyogenes MGAS5005]
gi|94989406|ref|YP_597507.1| cold shock protein [Streptococcus pyogenes MGAS9429]
gi|94993297|ref|YP_601396.1| cold shock protein [Streptococcus pyogenes MGAS2096]
gi|94995255|ref|YP_603353.1| Cold shock protein [Streptococcus pyogenes MGAS10750]
gi|209560193|ref|YP_002286665.1| Major cold-shock protein [Streptococcus pyogenes NZ131]
gi|306826514|ref|ZP_07459824.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782]
gi|28811932|dbj|BAC64861.1| putative cold shock protein [Streptococcus pyogenes SSI-1]
gi|71803508|gb|AAX72861.1| cold shock protein [Streptococcus pyogenes MGAS6180]
gi|71854360|gb|AAZ52383.1| cold shock protein [Streptococcus pyogenes MGAS5005]
gi|94542914|gb|ABF32963.1| cold shock protein [Streptococcus pyogenes MGAS9429]
gi|94546805|gb|ABF36852.1| Cold shock protein [Streptococcus pyogenes MGAS2096]
gi|94548763|gb|ABF38809.1| Cold shock protein [Streptococcus pyogenes MGAS10750]
gi|209541394|gb|ACI61970.1| Major cold-shock protein [Streptococcus pyogenes NZ131]
gi|304431301|gb|EFM34300.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782]
Length = 69
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 3 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 58
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 59 G--PQAVNITKL 68
>gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7]
gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7]
Length = 80
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V ++ Q
Sbjct: 16 TGTVKWFNDAKGFGFITPDN---GGEDLFAHFSSIQMNGFKTLKEGQKVAFEIAQGPKGK 72
Query: 64 KYSAENLK 71
A N+
Sbjct: 73 --QALNIT 78
>gi|209520011|ref|ZP_03268789.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295676690|ref|YP_003605214.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|209499550|gb|EDZ99627.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295436533|gb|ADG15703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
Length = 67
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + + G +L E Q V+++ Q
Sbjct: 1 MPTGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIRTEGFKSLQENQKVSFEIKQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++K V
Sbjct: 58 GK--QAADIKPV 67
>gi|116510999|ref|YP_808215.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
subsp. cremoris SK11]
gi|125623057|ref|YP_001031540.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
MG1363]
gi|3892590|emb|CAA76698.1| cold shock protein E [Lactococcus lactis subsp. cremoris MG1363]
gi|116106653|gb|ABJ71793.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
cremoris SK11]
gi|124491865|emb|CAL96786.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069804|gb|ADJ59204.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 65
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFIT E G+DVF H SA+ + G L EGQ VT+D +
Sbjct: 1 MAQGTVKWFNATKGFGFITTE----EGNDVFAHFSAIQTDGFKTLDEGQKVTFDVEEGPR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAVNIQK 65
>gi|317124225|ref|YP_004098337.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
gi|315588313|gb|ADU47610.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P G DVF+H S + + G +L E Q V +D Q
Sbjct: 1 MAQGTVKWFNSEKGFGFIAP----TEGPDVFVHYSEIQTNGYRSLEENQAVEFDVEQGPK 56
Query: 62 NGKYSAENLKLV 73
A ++LV
Sbjct: 57 G--PQAMRVRLV 66
>gi|299822994|ref|ZP_07054880.1| cold shock protein CspA [Listeria grayi DSM 20601]
gi|299816523|gb|EFI83761.1| cold shock protein CspA [Listeria grayi DSM 20601]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V++D +
Sbjct: 1 METGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQGDGFKSLDEGQAVSFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|167745412|ref|ZP_02417539.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662]
gi|317473040|ref|ZP_07932340.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|167655133|gb|EDR99262.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662]
gi|316899469|gb|EFV21483.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KGYGFI+ E GDDVF+H SA++ G L EGQ V+++ +
Sbjct: 1 MNTGTVKWFNSEKGYGFISQE----GGDDVFVHFSAISGDGFKTLEEGQQVSFEIAEGPR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 GK--QAENVSKL 66
>gi|160914188|ref|ZP_02076410.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991]
gi|158433999|gb|EDP12288.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT + G DVF+H S++ + G L EGQ VT+D V++D
Sbjct: 1 MSTGKVKWFNAEKGYGFITTD----EGKDVFVHYSSINADGFKTLEEGQAVTFDVVESDR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--EQAANVTV 65
>gi|53718538|ref|YP_107524.1| cold shock-like protein [Burkholderia pseudomallei K96243]
gi|53725849|ref|YP_103842.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
23344]
gi|67642114|ref|ZP_00440875.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|115352619|ref|YP_774458.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|121599049|ref|YP_991922.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
gi|124383933|ref|YP_001027037.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10229]
gi|126441710|ref|YP_001058009.1| cold shock protein [Burkholderia pseudomallei 668]
gi|126450006|ref|YP_001081686.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10247]
gi|126453970|ref|YP_001065243.1| cold shock protein [Burkholderia pseudomallei 1106a]
gi|134281301|ref|ZP_01768010.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|134296693|ref|YP_001120428.1| cold-shock DNA-binding protein family protein [Burkholderia
vietnamiensis G4]
gi|161523955|ref|YP_001578967.1| cold-shock DNA-binding domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|167003876|ref|ZP_02269655.1| cold-shock DNA-binding domain protein [Burkholderia mallei
PRL-20]
gi|167561845|ref|ZP_02354761.1| cold-shock domain family protein-related protein [Burkholderia
oklahomensis EO147]
gi|167569068|ref|ZP_02361942.1| cold-shock domain family protein-related protein [Burkholderia
oklahomensis C6786]
gi|167580101|ref|ZP_02372975.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis TXDOH]
gi|167585698|ref|ZP_02378086.1| cold-shock domain family protein-related protein [Burkholderia
ubonensis Bu]
gi|167618166|ref|ZP_02386797.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis Bt4]
gi|167718444|ref|ZP_02401680.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei DM98]
gi|167737494|ref|ZP_02410268.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei 14]
gi|167814612|ref|ZP_02446292.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei 91]
gi|167823082|ref|ZP_02454553.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei 9]
gi|167835723|ref|ZP_02462606.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis MSMB43]
gi|167844643|ref|ZP_02470151.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei B7210]
gi|167901628|ref|ZP_02488833.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei NCTC 13177]
gi|167909877|ref|ZP_02496968.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei 112]
gi|167917900|ref|ZP_02504991.1| cold-shock domain family protein-related protein [Burkholderia
pseudomallei BCC215]
gi|170697706|ref|ZP_02888794.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171319749|ref|ZP_02908837.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172061480|ref|YP_001809132.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|189351284|ref|YP_001946912.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|217419769|ref|ZP_03451275.1| cold shock family protein [Burkholderia pseudomallei 576]
gi|221199249|ref|ZP_03572293.1| cold shock protein [Burkholderia multivorans CGD2M]
gi|221205849|ref|ZP_03578864.1| cold shock protein [Burkholderia multivorans CGD2]
gi|221211471|ref|ZP_03584450.1| cold shock protein [Burkholderia multivorans CGD1]
gi|237811160|ref|YP_002895611.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|242316861|ref|ZP_04815877.1| cold shock family protein [Burkholderia pseudomallei 1106b]
gi|254181506|ref|ZP_04888103.1| cold shock protein [Burkholderia pseudomallei 1655]
gi|254196847|ref|ZP_04903271.1| cold shock protein [Burkholderia pseudomallei S13]
gi|254202546|ref|ZP_04908909.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|254207883|ref|ZP_04914233.1| cold-shock domain family protein [Burkholderia mallei JHU]
gi|254262054|ref|ZP_04953108.1| cold shock family protein [Burkholderia pseudomallei 1710a]
gi|254296417|ref|ZP_04963874.1| cold shock protein [Burkholderia pseudomallei 406e]
gi|254298241|ref|ZP_04965693.1| cold shock protein [Burkholderia pseudomallei 406e]
gi|257140008|ref|ZP_05588270.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|52208952|emb|CAH34891.1| cold shock-like protein [Burkholderia pseudomallei K96243]
gi|52429272|gb|AAU49865.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
gi|115282607|gb|ABI88124.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
gi|121227859|gb|ABM50377.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
gi|124291953|gb|ABN01222.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10229]
gi|126221203|gb|ABN84709.1| cold shock family protein [Burkholderia pseudomallei 668]
gi|126227612|gb|ABN91152.1| cold shock family protein [Burkholderia pseudomallei 1106a]
gi|126242876|gb|ABO05969.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10247]
gi|134139850|gb|ABO55593.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
G4]
gi|134247607|gb|EBA47692.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|147746793|gb|EDK53870.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|147751777|gb|EDK58844.1| cold-shock domain family protein [Burkholderia mallei JHU]
gi|157806110|gb|EDO83280.1| cold shock protein [Burkholderia pseudomallei 406e]
gi|157808249|gb|EDO85419.1| cold shock protein [Burkholderia pseudomallei 406e]
gi|160341384|gb|ABX14470.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC 17616]
gi|169653590|gb|EDS86283.1| cold shock protein [Burkholderia pseudomallei S13]
gi|170137454|gb|EDT05694.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171095021|gb|EDT40044.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171993997|gb|ACB64916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
gi|184212044|gb|EDU09087.1| cold shock protein [Burkholderia pseudomallei 1655]
gi|189335306|dbj|BAG44376.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|217397073|gb|EEC37089.1| cold shock family protein [Burkholderia pseudomallei 576]
gi|221168832|gb|EEE01300.1| cold shock protein [Burkholderia multivorans CGD1]
gi|221174687|gb|EEE07119.1| cold shock protein [Burkholderia multivorans CGD2]
gi|221180534|gb|EEE12937.1| cold shock protein [Burkholderia multivorans CGD2M]
gi|237506154|gb|ACQ98472.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|238523194|gb|EEP86634.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|242140100|gb|EES26502.1| cold shock family protein [Burkholderia pseudomallei 1106b]
gi|243060670|gb|EES42856.1| cold-shock DNA-binding domain protein [Burkholderia mallei
PRL-20]
gi|254220743|gb|EET10127.1| cold shock family protein [Burkholderia pseudomallei 1710a]
gi|325526419|gb|EGD04007.1| cold-shock domain-containing protein [Burkholderia sp. TJI49]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|323529334|ref|YP_004231486.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386336|gb|ADX58426.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + + G L E Q V+++ Q
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|116491359|ref|YP_810903.1| cold-shock DNA-binding protein family protein [Oenococcus oeni
PSU-1]
gi|118586607|ref|ZP_01544047.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163]
gi|290890924|ref|ZP_06553988.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429]
gi|116092084|gb|ABJ57238.1| cold-shock DNA-binding protein family [Oenococcus oeni PSU-1]
gi|118432922|gb|EAV39648.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163]
gi|290479323|gb|EFD87983.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKGYGFIT + G DVF+H SA+ + G +L EGQ VT++
Sbjct: 1 METGTVKWFNADKGYGFITRDN----GGDVFVHFSAIQTDGFKSLDEGQKVTFEVEDGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|222082689|ref|YP_002542054.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221727368|gb|ACM30457.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 74
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + Y+ +++
Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPDD---GGADAFVHISAVERAGMREIVEGQKIAYELERDN 61
Query: 61 ANGKYSAENLK 71
+GK SA NL+
Sbjct: 62 KSGKLSACNLQ 72
>gi|146280323|ref|YP_001170479.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC
17025]
gi|145558564|gb|ABP73174.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC
17025]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H SA+ AG+ L +GQ VT+D + D
Sbjct: 1 MATGTVKWFNTTKGFGFIAPAG---GSKDVFVHISALERAGIRQLDDGQAVTFDL-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLAL 67
>gi|319651116|ref|ZP_08005249.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
gi|317397170|gb|EFV77875.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ + G L EGQ V +D Q
Sbjct: 1 MATGKVKWFNSEKGFGFIEVE----GGEDVFVHYSAIQTEGFKTLDEGQEVNFDIEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVTKL 66
>gi|312200500|ref|YP_004020561.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
gi|311231836|gb|ADP84691.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ + G +L EGQ V +D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIQTDGFRSLDEGQRVEFDIEQGQK 57
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 58 G--PQAGKVRP 66
>gi|53717183|ref|YP_105587.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
23344]
gi|53722389|ref|YP_111374.1| cold shock-like protein [Burkholderia pseudomallei K96243]
gi|67640593|ref|ZP_00439394.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|76818479|ref|YP_335547.1| cold shock transcriptional regulator protein [Burkholderia
pseudomallei 1710b]
gi|121596928|ref|YP_990092.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
gi|124383143|ref|YP_001023992.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10229]
gi|126444073|ref|YP_001062939.1| hypothetical protein BURPS668_A1944 [Burkholderia pseudomallei
668]
gi|126447704|ref|YP_001078627.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10247]
gi|126455982|ref|YP_001075887.1| cold-shock domain-contain protein [Burkholderia pseudomallei
1106a]
gi|166999526|ref|ZP_02265363.1| cold-shock DNA-binding domain protein [Burkholderia mallei
PRL-20]
gi|167723959|ref|ZP_02407195.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
gi|167742930|ref|ZP_02415704.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
gi|167820105|ref|ZP_02451785.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
gi|167828481|ref|ZP_02459952.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
gi|167849936|ref|ZP_02475444.1| cold-shock domain family protein [Burkholderia pseudomallei
B7210]
gi|167898541|ref|ZP_02485942.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
gi|167906890|ref|ZP_02494095.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
13177]
gi|167915247|ref|ZP_02502338.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
gi|167923078|ref|ZP_02510169.1| cold-shock domain family protein [Burkholderia pseudomallei
BCC215]
gi|217425337|ref|ZP_03456831.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
gi|226199127|ref|ZP_03794689.1| cold-shock domain family protein [Burkholderia pseudomallei
Pakistan 9]
gi|237510263|ref|ZP_04522978.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|242312121|ref|ZP_04811138.1| cold-shock domain family protein [Burkholderia pseudomallei
1106b]
gi|254176187|ref|ZP_04882845.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
gi|254183753|ref|ZP_04890345.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|254186667|ref|ZP_04893183.1| cold-shock domain family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254194434|ref|ZP_04900866.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|254200381|ref|ZP_04906746.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|254263480|ref|ZP_04954345.1| cold-shock domain family protein [Burkholderia pseudomallei
1710a]
gi|254301649|ref|ZP_04969093.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|254356632|ref|ZP_04972907.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
gi|52212803|emb|CAH38835.1| putative cold shock-like protein [Burkholderia pseudomallei
K96243]
gi|52423153|gb|AAU46723.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
gi|76582952|gb|ABA52426.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|121224726|gb|ABM48257.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
gi|124291163|gb|ABN00433.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10229]
gi|126223564|gb|ABN87069.1| conserved domain protein [Burkholderia pseudomallei 668]
gi|126229750|gb|ABN93163.1| cold-shock domain family protein [Burkholderia pseudomallei
1106a]
gi|126240558|gb|ABO03670.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10247]
gi|147747993|gb|EDK55068.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|148025659|gb|EDK83782.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
gi|157810787|gb|EDO87957.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|157934351|gb|EDO90021.1| cold-shock domain family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|160697229|gb|EDP87199.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
gi|169651185|gb|EDS83878.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|184214286|gb|EDU11329.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|217391588|gb|EEC31616.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
gi|225928902|gb|EEH24927.1| cold-shock domain family protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002468|gb|EEP51892.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|238521343|gb|EEP84795.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|242135360|gb|EES21763.1| cold-shock domain family protein [Burkholderia pseudomallei
1106b]
gi|243064365|gb|EES46551.1| cold-shock DNA-binding domain protein [Burkholderia mallei
PRL-20]
gi|254214482|gb|EET03867.1| cold-shock domain family protein [Burkholderia pseudomallei
1710a]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S + S G L E Q V+++ +
Sbjct: 1 MDTGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLAENQKVSFETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|184201878|ref|YP_001856085.1| cold shock protein [Kocuria rhizophila DC2201]
gi|183582108|dbj|BAG30579.1| cold shock protein [Kocuria rhizophila DC2201]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI PE DDVF H S + S G +L EG V ++ Q D
Sbjct: 1 MTTGTVKWFNADKGFGFIAPED---GSDDVFAHFSGINSGGFRSLNEGDKVEFEVQQGDR 57
Query: 62 NGKYSAENLKLVP 74
A N+ ++
Sbjct: 58 G--LQATNISVIS 68
>gi|39936116|ref|NP_948392.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris CGA009]
gi|192291834|ref|YP_001992439.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
gi|39649970|emb|CAE28494.1| cold shock DNA binding protein [Rhodopseudomonas palustris
CGA009]
gi|192285583|gb|ACF01964.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQPIEYDLVEN-- 55
Query: 62 NGKYSAENLKL 72
G+ SAENLK+
Sbjct: 56 RGRTSAENLKI 66
>gi|262200536|ref|YP_003271744.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
gi|262083883|gb|ACY19851.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
Length = 79
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ G DVF+H SA+ +G NL E Q V +D Q
Sbjct: 13 MAQGTVKWFNGEKGFGFIAPDD---QGADVFVHFSAIQGSGFRNLEEAQRVEFDVEQGAK 69
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 70 G--LQATNVSVI 79
>gi|260432172|ref|ZP_05786143.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416000|gb|EEX09259.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SA+ +GL L + Q VTYD Q+
Sbjct: 1 MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISALERSGLTGLADNQKVTYDV-QSGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SAENL+LV
Sbjct: 57 DGRESAENLQLV 68
>gi|269124786|ref|YP_003298156.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268309744|gb|ACY96118.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
DSM 43183]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKG+GFI+P+ D+F+H SA+ G L E Q V Y VQ
Sbjct: 1 MAQGTVKWFNPDKGFGFISPDD---GSADIFVHHSAIQMRGFRTLVEEQRVEYTAVQGPK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--LQADVVRAL 67
>gi|302877658|ref|YP_003846222.1| cold-shock DNA-binding domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302580447|gb|ADL54458.1| cold-shock DNA-binding domain protein [Gallionella
capsiferriformans ES-2]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+TP+ +D+F H SA+ G L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFVTPDD---GSEDLFAHFSAINMNGFKTLQEGQKVSFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|220933677|ref|YP_002512576.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio
sp. HL-EbGR7]
gi|219994987|gb|ACL71589.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio
sp. HL-EbGR7]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFITPE G DVF+H SA+ ++G L EGQ+V+++
Sbjct: 1 MSKGTVKWFNESKGFGFITPED---GGKDVFVHFSAIEASGFRTLAEGQMVSFEVTNGPK 57
Query: 62 NGKYSAENLKLV 73
+A N+K V
Sbjct: 58 G--LAAANVKPV 67
>gi|86356213|ref|YP_468105.1| cold shock protein [Rhizobium etli CFN 42]
gi|86280315|gb|ABC89378.1| cold shock protein [Rhizobium etli CFN 42]
Length = 69
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L +GQ ++YD V+++
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDD---GAADVFVHISAVERAGMRDLKDGQKLSYDLVRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67
>gi|332715811|ref|YP_004443277.1| cold shock protein cspA [Agrobacterium sp. H13-3]
gi|325062496|gb|ADY66186.1| cold shock protein cspA [Agrobacterium sp. H13-3]
Length = 74
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D +++
Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPDN---GGTDAFVHISAVERAGMRELVEGQKIGFDLERDN 61
Query: 61 ANGKYSAENLK 71
+GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72
>gi|53720688|ref|YP_109674.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243]
gi|53723938|ref|YP_104309.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
23344]
gi|67641928|ref|ZP_00440693.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|76811091|ref|YP_334974.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|83720047|ref|YP_443443.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|124383483|ref|YP_001027729.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10229]
gi|126440312|ref|YP_001060602.1| CspE-related protein [Burkholderia pseudomallei 668]
gi|126449743|ref|YP_001082701.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
10247]
gi|126452091|ref|YP_001067852.1| cold-shock domain-contain protein [Burkholderia pseudomallei
1106a]
gi|134283275|ref|ZP_01769976.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|167582495|ref|ZP_02375369.1| cold-shock domain family protein [Burkholderia thailandensis
TXDOH]
gi|167620585|ref|ZP_02389216.1| cold-shock domain family protein [Burkholderia thailandensis Bt4]
gi|167721415|ref|ZP_02404651.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
gi|167740382|ref|ZP_02413156.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
gi|167817600|ref|ZP_02449280.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
gi|167826001|ref|ZP_02457472.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
gi|167896076|ref|ZP_02483478.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
gi|167904462|ref|ZP_02491667.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
13177]
gi|167912723|ref|ZP_02499814.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
gi|167920683|ref|ZP_02507774.1| cold-shock domain family protein [Burkholderia pseudomallei
BCC215]
gi|217424876|ref|ZP_03456373.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
gi|226198244|ref|ZP_03793815.1| cold-shock domain family protein [Burkholderia pseudomallei
Pakistan 9]
gi|237813987|ref|YP_002898438.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|242317385|ref|ZP_04816401.1| cold-shock domain family protein [Burkholderia pseudomallei
1106b]
gi|254175079|ref|ZP_04881740.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
gi|254180483|ref|ZP_04887081.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|254190465|ref|ZP_04896973.1| cold-shock domain family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254198469|ref|ZP_04904890.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|254201381|ref|ZP_04907745.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|254206723|ref|ZP_04913074.1| cold-shock domain family protein [Burkholderia mallei JHU]
gi|254258676|ref|ZP_04949730.1| cold-shock domain family protein [Burkholderia pseudomallei
1710a]
gi|254300718|ref|ZP_04968163.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|254357313|ref|ZP_04973587.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
gi|257137775|ref|ZP_05586037.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
E264]
gi|52211102|emb|CAH37090.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243]
gi|52427361|gb|AAU47954.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
gi|76580544|gb|ABA50019.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|83653872|gb|ABC37935.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis E264]
gi|124291503|gb|ABN00772.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10229]
gi|126219805|gb|ABN83311.1| CspE-like protein [Burkholderia pseudomallei 668]
gi|126225733|gb|ABN89273.1| cold-shock domain family protein [Burkholderia pseudomallei
1106a]
gi|126242613|gb|ABO05706.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
10247]
gi|134245470|gb|EBA45563.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
gi|147747275|gb|EDK54351.1| cold-shock domain family protein [Burkholderia mallei FMH]
gi|147752265|gb|EDK59331.1| cold-shock domain family protein [Burkholderia mallei JHU]
gi|148026377|gb|EDK84462.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
gi|157810480|gb|EDO87650.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|157938141|gb|EDO93811.1| cold-shock domain family protein [Burkholderia pseudomallei
Pasteur 52237]
gi|160696124|gb|EDP86094.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
gi|169655209|gb|EDS87902.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|184211022|gb|EDU08065.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|217392332|gb|EEC32357.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
gi|225929764|gb|EEH25780.1| cold-shock domain family protein [Burkholderia pseudomallei
Pakistan 9]
gi|237506828|gb|ACQ99146.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|238522943|gb|EEP86385.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
horse 4]
gi|242140624|gb|EES27026.1| cold-shock domain family protein [Burkholderia pseudomallei
1106b]
gi|254217365|gb|EET06749.1| cold-shock domain family protein [Burkholderia pseudomallei
1710a]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPEG G+D+F H S + G L E Q V ++
Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|258590957|emb|CBE67252.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment']
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KGYGFI E GDDVF+H SA++ +G +L EGQ V +D V
Sbjct: 1 MRVTGTVKWFNDAKGYGFIARED----GDDVFVHYSAISGSGFRSLNEGQAVEFDVVDGP 56
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 57 KGK--QAANVT 65
>gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF+H S + +G L E Q V ++ +
Sbjct: 1 MATGTVKWFNAEKGFGFIAPDD---GSSDVFVHYSEIQGSGFRTLEENQQVEFEIGEGSK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQQVRAL 67
>gi|254380603|ref|ZP_04995969.1| cold shock protein scoF [Streptomyces sp. Mg1]
gi|194339514|gb|EDX20480.1| cold shock protein scoF [Streptomyces sp. Mg1]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ+VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQIVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|116494613|ref|YP_806347.1| cold shock protein [Lactobacillus casei ATCC 334]
gi|191638050|ref|YP_001987216.1| Similar to cold shock protein, CspA family [Lactobacillus casei
BL23]
gi|239631790|ref|ZP_04674821.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301066162|ref|YP_003788185.1| cold shock protein [Lactobacillus casei str. Zhang]
gi|116104763|gb|ABJ69905.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
334]
gi|190712352|emb|CAQ66358.1| Similar to cold shock protein, CspA family [Lactobacillus casei
BL23]
gi|239526255|gb|EEQ65256.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300438569|gb|ADK18335.1| Cold shock protein [Lactobacillus casei str. Zhang]
gi|327382135|gb|AEA53611.1| Cold-shock domain family protein [Lactobacillus casei LC2W]
gi|327385278|gb|AEA56752.1| Cold-shock domain family protein [Lactobacillus casei BD-II]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D
Sbjct: 1 MEHGTVKWFNAEKGYGFITRED----GSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|167647685|ref|YP_001685348.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
K31]
gi|167350115|gb|ABZ72850.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
Length = 179
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+NP KG+GFI PE G DVF+H +AV +GL L EG VTY+ ++
Sbjct: 1 MANGVVKWFNPAKGFGFIQPED---GGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRR 57
Query: 62 NGKYSAENLKLVPKSS 77
+GK SA NL++ + +
Sbjct: 58 SGKTSAGNLRVTGQGA 73
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GFI P+ G D+F+H SAV AGL L EGQ V Y+ Q+ +GK
Sbjct: 115 VVKWFNSTKGFGFIQPDN---GGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKT 171
Query: 66 SAENLKLV 73
SA NL+++
Sbjct: 172 SAGNLRIL 179
>gi|153005354|ref|YP_001379679.1| cold-shock DNA-binding domain-containing protein
[Anaeromyxobacter sp. Fw109-5]
gi|152028927|gb|ABS26695.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ GS+KW+N KG+GFI +G G+DVF H +A+ S G L EGQ V ++ Q
Sbjct: 1 MASGSVKWFNDAKGFGFIQQDG---GGEDVFCHHTAIQSQGFRTLQEGQRVEFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--LQAANVRPV 67
>gi|159184158|ref|NP_353140.2| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|159139492|gb|AAK85925.2| cold shock protein [Agrobacterium tumefaciens str. C58]
Length = 69
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV AGL L +GQ ++Y+ +Q+
Sbjct: 1 MATGTVKWFNATKGYGFIQPDD---GSQDVFVHISAVERAGLTALNDGQKLSYELMQDRR 57
Query: 62 NGKYSAENL 70
+GK SA L
Sbjct: 58 SGKMSAGEL 66
>gi|85714849|ref|ZP_01045835.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85698335|gb|EAQ36206.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 81
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI P+G G+DVF+H SAV AGL L EGQ V+++ ++A
Sbjct: 13 MSTGIVKWFNSQKGYGFIQPDG---GGNDVFVHISAVQRAGLNGLGEGQKVSFEARTDEA 69
Query: 62 NGKYSAENLKL 72
GK SA+NL L
Sbjct: 70 RGKVSAQNLSL 80
>gi|119383705|ref|YP_914761.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119373472|gb|ABL69065.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL L + Q + Y+ Q+
Sbjct: 1 MATGTVKWFNATKGYGFIAPDD---GGKDVFVHISAVERAGLTGLNDNQKIAYEL-QSGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +LKL+
Sbjct: 57 DGRSSASDLKLL 68
>gi|308067105|ref|YP_003868710.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa
E681]
gi|305856384|gb|ADM68172.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa
E681]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V ++ V+ +
Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGDGFKSLDEGQRVEFNVVEGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|218290263|ref|ZP_03494417.1| cold-shock DNA-binding domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|258512161|ref|YP_003185595.1| cold-shock DNA-binding domain-containing protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|218239738|gb|EED06929.1| cold-shock DNA-binding domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|257478887|gb|ACV59206.1| cold-shock DNA-binding domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KGYGFI E GDDVF+H SA+ G L EGQ VT+D V+
Sbjct: 1 MYEGTVKWFNSEKGYGFIQVEN----GDDVFVHYSAIQGHGFKTLDEGQRVTFDIVEGPK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|170751748|ref|YP_001758008.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170658270|gb|ACB27325.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KGYGFI P+ G DVF+H SAV AG+ NL EGQ + Y+ + +
Sbjct: 1 MNTGTVKWFNETKGYGFIQPDD---GGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKDAAGNLQ 67
>gi|170690994|ref|ZP_02882160.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|307726662|ref|YP_003909875.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323529135|ref|YP_004231287.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|170144243|gb|EDT12405.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|307587187|gb|ADN60584.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323386137|gb|ADX58227.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S V +G +L E Q V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEVQGSGFKSLQENQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 GK--QAANITP 66
>gi|71908706|ref|YP_286293.1| cold-shock DNA-binding protein family protein [Dechloromonas
aromatica RCB]
gi|71848327|gb|AAZ47823.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
RCB]
Length = 72
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ G L EGQ V++D VQ
Sbjct: 6 MAIGTVKWFNDSKGFGFITPDD---GSEDLFAHFSAINMNGFKTLKEGQKVSFDVVQGPK 62
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 63 GK--QASNIQ 70
>gi|56477397|ref|YP_158986.1| cold shock transcriptional regulator [Aromatoleum aromaticum
EbN1]
gi|56313440|emb|CAI08085.1| probably cold shock transcription regulator protein [Aromatoleum
aromaticum EbN1]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ +G +LTEGQ V YD
Sbjct: 1 MATGTVKWFNDSKGFGFITPDN---GGEDLFAHFSAIQGSGFKSLTEGQKVQYDETSGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAGNIRPL 67
>gi|89093060|ref|ZP_01166011.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
MED92]
gi|89082710|gb|EAR61931.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
MED92]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N +KG+GFI E G DVF+H SA+ G L EGQ V + Q
Sbjct: 1 MSTTGTVKWFNEEKGFGFIEQEN----GPDVFVHFSAIQGDGFKTLAEGQKVEFSVTQGQ 56
Query: 61 ANGKYSAENLKL 72
AEN+
Sbjct: 57 KG--PQAENVTK 66
>gi|293602670|ref|ZP_06685111.1| CspA family cold shock transcriptional regulator [Achromobacter
piechaudii ATCC 43553]
gi|311109651|ref|YP_003982504.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
gi|292818861|gb|EFF77901.1| CspA family cold shock transcriptional regulator [Achromobacter
piechaudii ATCC 43553]
gi|310764340|gb|ADP19789.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++
Sbjct: 1 MAQKGKVKWFNADKGYGFITPD---VGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 58 KG--PQAAEIRPL 68
>gi|163859299|ref|YP_001633597.1| cold shock protein [Bordetella petrii DSM 12804]
gi|163263027|emb|CAP45330.1| cold shock protein [Bordetella petrii]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
MV +G +KW+N DKG+GFITP+ G DVF H SA+ G +L EGQ V ++
Sbjct: 1 MVQKGKVKWFNADKGFGFITPD---AGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDGP 57
Query: 61 ANGKYSAENLKLV 73
A +++ +
Sbjct: 58 KG--PQAADIRPL 68
>gi|82702420|ref|YP_411986.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
multiformis ATCC 25196]
gi|82410485|gb|ABB74594.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
ATCC 25196]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP +D+F H SA+ +G L EGQ VT++ Q
Sbjct: 1 MATGTVKWFNEAKGFGFITPVD---GSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|54026196|ref|YP_120438.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54017704|dbj|BAD59074.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 68
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI +G G DVF+H SAV+ +G +L EGQ V ++ Q
Sbjct: 1 MAQGIVKWFNSEKGFGFIAQDG---GGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A+++++V
Sbjct: 58 G--PQAQDVRVV 67
>gi|226311427|ref|YP_002771321.1| cold shock protein [Brevibacillus brevis NBRC 100599]
gi|226094375|dbj|BAH42817.1| cold shock protein [Brevibacillus brevis NBRC 100599]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E GDDVF+H SA+ S G +L EGQ V ++ VQ
Sbjct: 1 MQQGIVKWFNAEKGYGFIQVE----GGDDVFVHYSAIQSEGFKSLDEGQKVEFEIVQGSR 56
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 57 G--PQAASVTKL 66
>gi|116250220|ref|YP_766058.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254868|emb|CAK05942.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 69
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ +L EGQ + +D +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDN---GGADAFVHISAVERAGMRDLVEGQKIGFDLERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|257784693|ref|YP_003179910.1| cold-shock DNA-binding domain-containing protein [Atopobium
parvulum DSM 20469]
gi|257473200|gb|ACV51319.1| cold-shock DNA-binding domain protein [Atopobium parvulum DSM
20469]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V ++
Sbjct: 1 MAQGTVKWFNPDKGYGFISRED----GDDLFVHFSEIQMDGFKTLDEGQPVEFEITTGQ- 55
Query: 62 NGKYSAENLKLV 73
NGK A ++ +
Sbjct: 56 NGKLQASSVHKI 67
>gi|323356496|ref|YP_004222892.1| cold shock proteins [Microbacterium testaceum StLB037]
gi|323272867|dbj|BAJ73012.1| cold shock proteins [Microbacterium testaceum StLB037]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI P+ D+F H SA+ G LTE Q V +D Q
Sbjct: 1 MATGTVKWFNSEKGYGFIAPDD---GSADLFAHFSAIQGNGFKELTEAQKVEFDAEQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--MQAANIRPL 67
>gi|162147832|ref|YP_001602293.1| cold-shock DNA-binding domain-containing protein
[Gluconacetobacter diazotrophicus PAl 5]
gi|209542453|ref|YP_002274682.1| cold-shock DNA-binding domain-containing protein
[Gluconacetobacter diazotrophicus PAl 5]
gi|161786409|emb|CAP55991.1| putative cold-shock DNA-binding domain protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530130|gb|ACI50067.1| cold-shock DNA-binding domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H +AV +AGL L E Q V+YD V
Sbjct: 1 MATGTVKWFNATKGFGFIMPED---GGKDVFVHITAVQAAGLRGLNENQRVSYDVVTE-- 55
Query: 62 NGKYSAENLKLV 73
GK +A NLK +
Sbjct: 56 RGKAAASNLKPL 67
>gi|108757963|ref|YP_633461.1| cold-shock protein CspB [Myxococcus xanthus DK 1622]
gi|4193392|gb|AAD10034.1| CspB [Myxococcus xanthus]
gi|108461843|gb|ABF87028.1| cold-shock protein CspB [Myxococcus xanthus DK 1622]
Length = 66
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G+DVF H +A+ G L EGQ V ++ +
Sbjct: 1 MAIGTVKWFNDAKGFGFIAQDN----GEDVFCHHTAINMDGFRTLQEGQQVEFEVTRGPK 56
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 57 G--LQAQNVRAV 66
>gi|330975335|gb|EGH75401.1| cold-shock protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|330968898|gb|EGH68964.1| cold-shock protein [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|330964818|gb|EGH65078.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|330959259|gb|EGH59519.1| cold-shock protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 189
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 122 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 176
Query: 64 KYSAENL 70
AE++
Sbjct: 177 -LQAEDV 182
>gi|330950615|gb|EGH50875.1| cold-shock protein [Pseudomonas syringae Cit 7]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|330896121|gb|EGH28342.1| cold-shock protein [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|330811400|ref|YP_004355862.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379508|gb|AEA70858.1| Putative transcription factor, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 201
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 134 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 188
Query: 64 KYSAENL 70
AE++
Sbjct: 189 -LQAEDV 194
>gi|312962766|ref|ZP_07777254.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
gi|311282983|gb|EFQ61576.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
Length = 200
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 133 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 187
Query: 64 KYSAENL 70
AE++
Sbjct: 188 -LQAEDV 193
>gi|289674663|ref|ZP_06495553.1| cold-shock protein [Pseudomonas syringae pv. syringae FF5]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|257487017|ref|ZP_05641058.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|298488215|ref|ZP_07006251.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157273|gb|EFH98357.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330988962|gb|EGH87065.1| cold-shock protein [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|237800212|ref|ZP_04588673.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331023069|gb|EGI03126.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|213969178|ref|ZP_03397317.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
gi|301384826|ref|ZP_07233244.1| cold-shock protein [Pseudomonas syringae pv. tomato Max13]
gi|302130616|ref|ZP_07256606.1| cold-shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213926176|gb|EEB59732.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
Length = 202
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 189
Query: 64 KYSAENL 70
AE++
Sbjct: 190 -LQAEDV 195
>gi|190890260|ref|YP_001976802.1| cold shock protein [Rhizobium etli CIAT 652]
gi|218509122|ref|ZP_03507000.1| cold shock protein [Rhizobium etli Brasil 5]
gi|218513064|ref|ZP_03509904.1| cold shock protein [Rhizobium etli 8C-3]
gi|218672806|ref|ZP_03522475.1| cold shock protein [Rhizobium etli GR56]
gi|190695539|gb|ACE89624.1| cold shock protein [Rhizobium etli CIAT 652]
gi|327190777|gb|EGE57846.1| cold shock protein [Rhizobium etli CNPAF512]
Length = 69
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L +GQ ++Y+ V+++
Sbjct: 1 MNTGTVKWFNATKGFGFIQPDD---GAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67
>gi|161526063|ref|YP_001581075.1| cold-shock DNA-binding domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|167587642|ref|ZP_02380030.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
gi|189349222|ref|YP_001944850.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221201715|ref|ZP_03574753.1| cold-shock domain family protein [Burkholderia multivorans CGD2M]
gi|221207210|ref|ZP_03580220.1| cold-shock domain family protein [Burkholderia multivorans CGD2]
gi|221213338|ref|ZP_03586313.1| cold-shock domain family protein [Burkholderia multivorans CGD1]
gi|160343492|gb|ABX16578.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC 17616]
gi|189333244|dbj|BAG42314.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221166790|gb|EED99261.1| cold-shock domain family protein [Burkholderia multivorans CGD1]
gi|221172798|gb|EEE05235.1| cold-shock domain family protein [Burkholderia multivorans CGD2]
gi|221178531|gb|EEE10940.1| cold-shock domain family protein [Burkholderia multivorans CGD2M]
gi|325518815|gb|EGC98394.1| CspA family cold shock protein [Burkholderia sp. TJI49]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++
Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQAANIRPL 67
>gi|70732095|ref|YP_261851.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5]
gi|68346394|gb|AAY94000.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5]
Length = 201
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 134 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 188
Query: 64 KYSAENL 70
AE++
Sbjct: 189 -LQAEDV 194
>gi|77460636|ref|YP_350143.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
gi|77384639|gb|ABA76152.1| putative cold shock protein [Pseudomonas fluorescens Pf0-1]
Length = 200
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 133 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 187
Query: 64 KYSAENL 70
AE++
Sbjct: 188 -LQAEDV 193
>gi|237800557|ref|ZP_04589018.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023417|gb|EGI03474.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 96
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V++D +Q
Sbjct: 1 MLNGKVKWFNNAKGYGFILEDGKP--DEDLFAHYSAIQMEGYKTLKAGQPVSFDIIQGPK 58
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 59 GN--HAVNIS 66
>gi|52079019|ref|YP_077810.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
gi|52784391|ref|YP_090220.1| hypothetical protein BLi00578 [Bacillus licheniformis ATCC 14580]
gi|319648678|ref|ZP_08002889.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2]
gi|52002230|gb|AAU22172.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
gi|52346893|gb|AAU39527.1| CspC [Bacillus licheniformis ATCC 14580]
gi|317389097|gb|EFV69913.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2]
Length = 67
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGPR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|118595187|ref|ZP_01552534.1| Possible Cold-shock DNA-binding domain protein [Methylophilales
bacterium HTCC2181]
gi|118440965|gb|EAV47592.1| Possible Cold-shock DNA-binding domain protein [Methylophilales
bacterium HTCC2181]
Length = 68
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H SA+ G +L EG V+++
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGDDLFAHFSAIVDDGYKSLKEGARVSFEVTDGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQP 66
>gi|148546481|ref|YP_001266583.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida F1]
gi|148510539|gb|ABQ77399.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
Length = 197
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185
Query: 64 KYSAENLKLV 73
AE++ V
Sbjct: 186 -LQAEDVVAV 194
>gi|172057694|ref|YP_001814154.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|172057696|ref|YP_001814156.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|171990215|gb|ACB61137.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
255-15]
gi|171990217|gb|ACB61139.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
255-15]
Length = 66
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E SGDDVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFEVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVTKL 66
>gi|254381183|ref|ZP_04996548.1| cold shock protein scoF [Streptomyces sp. Mg1]
gi|254381243|ref|ZP_04996608.1| cold shock protein scoF [Streptomyces sp. Mg1]
gi|254381451|ref|ZP_04996815.1| cold shock protein scoF [Streptomyces sp. Mg1]
gi|194340093|gb|EDX21059.1| cold shock protein scoF [Streptomyces sp. Mg1]
gi|194340153|gb|EDX21119.1| cold shock protein scoF [Streptomyces sp. Mg1]
gi|194340360|gb|EDX21326.1| cold shock protein scoF [Streptomyces sp. Mg1]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ+VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQVVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|116250366|ref|YP_766204.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|209547826|ref|YP_002279743.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|218658368|ref|ZP_03514298.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
gi|241203000|ref|YP_002974096.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115255014|emb|CAK06088.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209533582|gb|ACI53517.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|240856890|gb|ACS54557.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 69
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L +GQ ++Y+ V+++
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDD---GAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67
>gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinnamea P4]
gi|319437339|gb|EFV92359.1| cold-shock protein [Dietzia cinnamea P4]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI PE D+F+H S++ G +L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGYGFIAPED---GSADLFVHYSSIEGTGFKSLEENQRVEFEVGEGQK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQEVRAL 67
>gi|241518615|ref|YP_002979243.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240863028|gb|ACS60692.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 69
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + ++ +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDN---GGADAFVHISAVERAGMRELVEGQKIGFELERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|238026086|ref|YP_002910317.1| Cold shock-like protein CspD [Burkholderia glumae BGR1]
gi|330815379|ref|YP_004359084.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3]
gi|237875280|gb|ACR27613.1| Cold shock-like protein CspD [Burkholderia glumae BGR1]
gi|327367772|gb|AEA59128.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++
Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|115524372|ref|YP_781283.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisA53]
gi|115518319|gb|ABJ06303.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
Length = 69
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H SAV AGL L EGQ V+Y V +
Sbjct: 1 MATGTVKWFNGQKGFGFIEPSD---GGKDVFVHISAVERAGLTGLAEGQKVSYQVVADKK 57
Query: 62 NGKYSAENLKLV 73
GK SAE+L LV
Sbjct: 58 RGKESAESLALV 69
>gi|294498189|ref|YP_003561889.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295703539|ref|YP_003596614.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294348126|gb|ADE68455.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294801198|gb|ADF38264.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N +KG+GFI +DVF+H SA+ S G L EGQ V ++ V+
Sbjct: 1 MATTGTVKWFNSEKGFGFIEV----PGENDVFVHFSAIQSEGFKTLEEGQKVEFEIVEGQ 56
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 57 RG--PQAENVVKL 67
>gi|293375824|ref|ZP_06622094.1| major cold shock protein CspA [Turicibacter sanguinis PC909]
gi|325838578|ref|ZP_08166579.1| cold shock protein CspB [Turicibacter sp. HGF1]
gi|292645601|gb|EFF63641.1| major cold shock protein CspA [Turicibacter sanguinis PC909]
gi|325490804|gb|EGC93107.1| cold shock protein CspB [Turicibacter sp. HGF1]
Length = 66
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT + G+DVF H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MTTGTVKWFNAEKGFGFITVD----GGNDVFAHFSAITGEGFKTLEEGQKVSFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANIVKL 66
>gi|253999063|ref|YP_003051126.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. SIP3-4]
gi|313201165|ref|YP_004039823.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. MP688]
gi|253985742|gb|ACT50599.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
gi|312440481|gb|ADQ84587.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+AS G +L E + V++D
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSAIASNGFKSLKENERVSFDITTGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|74316873|ref|YP_314613.1| cold-shock DNA-binding protein family protein [Thiobacillus
denitrificans ATCC 25259]
gi|74056368|gb|AAZ96808.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
denitrificans ATCC 25259]
Length = 68
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG+GFITP+ G+DVF H SA+ + G L EGQ V+++ Q
Sbjct: 1 MATGTVKWFSDAKGFGFITPDD---GGEDVFAHFSAIQTNGFKTLKEGQKVSFEVSQGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQP 66
>gi|238757593|ref|ZP_04618777.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236]
gi|238704098|gb|EEP96631.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236]
Length = 85
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|218670224|ref|ZP_03519895.1| probable cold shock protein [Rhizobium etli GR56]
Length = 69
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDN---GGTDAFVHISAVERAGMRELVEGQKIGFDLERDHK 57
Query: 62 NGKYSAENLKL 72
+GK SA NL+
Sbjct: 58 SGKMSACNLQK 68
>gi|289434645|ref|YP_003464517.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170889|emb|CBH27431.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 66
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V++D +
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQGDGFKSLDEGQAVSFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|83717433|ref|YP_439199.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|167577641|ref|ZP_02370515.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis TXDOH]
gi|167615783|ref|ZP_02384418.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis Bt4]
gi|257142321|ref|ZP_05590583.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|83651258|gb|ABC35322.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis E264]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S + S G L + Q V+++ +
Sbjct: 1 METGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLADNQKVSFETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|309389742|gb|ADO77622.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
DSM 2228]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
MV+ G++KW++ KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ D
Sbjct: 1 MVYTGNVKWFDEKKGYGFIERED----GDDVFVHFSALQQEGFKTLEEGQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
AEN++++
Sbjct: 57 RG--PQAENVEVI 67
>gi|226223965|ref|YP_002758072.1| cold shock protein [Listeria monocytogenes Clip81459]
gi|1001878|emb|CAA62903.1| CspA protein [Listeria monocytogenes]
gi|225876427|emb|CAS05136.1| Putative cold shock protein [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|313608931|gb|EFR84686.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
Length = 68
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D +
Sbjct: 3 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQR 58
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 59 G--PQAANVQK 67
>gi|90423823|ref|YP_532193.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisB18]
gi|90105837|gb|ABD87874.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB18]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQTIEYELVEN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66
>gi|313497560|gb|ADR58926.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas
putida BIRD-1]
Length = 197
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185
Query: 64 KYSAENLKLV 73
AE++ V
Sbjct: 186 -LQAEDVVAV 194
>gi|86356092|ref|YP_467984.1| cold shock protein [Rhizobium etli CFN 42]
gi|190890106|ref|YP_001976648.1| cold shock protein [Rhizobium etli CIAT 652]
gi|218461048|ref|ZP_03501139.1| probable cold shock protein [Rhizobium etli Kim 5]
gi|218515057|ref|ZP_03511897.1| probable cold shock protein [Rhizobium etli 8C-3]
gi|86280194|gb|ABC89257.1| probable cold shock protein [Rhizobium etli CFN 42]
gi|190695385|gb|ACE89470.1| probable cold shock protein [Rhizobium etli CIAT 652]
Length = 74
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++
Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPDN---GGADAFVHISAVERAGMRELVEGQKIGFDLERDH 61
Query: 61 ANGKYSAENLKL 72
+GK SA NL+
Sbjct: 62 KSGKMSACNLQK 73
>gi|115525288|ref|YP_782199.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisA53]
gi|115519235|gb|ABJ07219.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQPIEYELVEN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66
>gi|297560234|ref|YP_003679208.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844682|gb|ADH66702.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI +G G DVF H SA+ + G L EGQ V +D Q
Sbjct: 1 MATGKVKWFNGEKGFGFIEQDG---GGPDVFAHYSAIQANGYRELAEGQNVEFDVTQGAK 57
Query: 62 NGKYSAENLKLV 73
A+N+ L+
Sbjct: 58 G--LQADNITLI 67
>gi|284990776|ref|YP_003409330.1| cold-shock DNA-binding domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284064021|gb|ADB74959.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 310
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ +G++KW+N +KG+GFI P+ G DVF+H SA+A G L EGQ V ++ Q
Sbjct: 1 MPQGTVKWFNAEKGFGFIEPDD---GGQDVFVHFSAIADEGGFRTLDEGQQVEFEASQGQ 57
Query: 61 ANGKYSAENLKLVPKSS 77
A++++ V +
Sbjct: 58 RG--LQADSVRPVGGAP 72
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
G++KW+N +KG+GFI + G DVF+H SA+ G +L EGQ V ++
Sbjct: 243 RANGTVKWFNAEKGFGFIEADD---GGPDVFVHFSAISDRGGYRSLDEGQRVEFEASDGQ 299
Query: 61 ANGKYSAENL 70
A+ +
Sbjct: 300 RG--RQADRV 307
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDANGKY 65
+ W++ DKG+GFI P+ E G DVF+H S +A + G +L EGQ V + Q
Sbjct: 122 VTWFDNDKGFGFIQPD---EDGPDVFVHFSQIADSGGYRSLDEGQRVEFAVTQGQRG--P 176
Query: 66 SAENLK 71
AE+++
Sbjct: 177 QAEDVR 182
>gi|254389689|ref|ZP_05004914.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064]
gi|326445343|ref|ZP_08220077.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|197703401|gb|EDY49213.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + S+G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSNINSSGYRELQEGQAVTFDITQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|15675836|ref|NP_270010.1| putative cold shock protein [Streptococcus pyogenes M1 GAS]
gi|19746951|ref|NP_608087.1| cold shock protein [Streptococcus pyogenes MGAS8232]
gi|21911305|ref|NP_665573.1| putative cold-shock protein [Streptococcus pyogenes MGAS315]
gi|61221535|sp|P0A360|CSPA_STRP3 RecName: Full=Major cold shock protein
gi|61221536|sp|P0A361|CSPA_STRP8 RecName: Full=Major cold shock protein
gi|81175243|sp|P0C0F1|CSPA_STRP1 RecName: Full=Major cold shock protein
gi|13623066|gb|AAK34731.1| putative cold shock protein [Streptococcus pyogenes M1 GAS]
gi|19749202|gb|AAL98586.1| putative cold shock protein [Streptococcus pyogenes MGAS8232]
gi|21905519|gb|AAM80376.1| putative cold-shock protein [Streptococcus pyogenes MGAS315]
Length = 67
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNITKL 66
>gi|28377809|ref|NP_784701.1| cold shock protein CspC [Lactobacillus plantarum WCFS1]
gi|254555993|ref|YP_003062410.1| cold shock protein CspC [Lactobacillus plantarum JDM1]
gi|300767794|ref|ZP_07077704.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308179985|ref|YP_003924113.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|28270642|emb|CAD63548.1| cold shock protein CspC [Lactobacillus plantarum WCFS1]
gi|254044920|gb|ACT61713.1| cold shock protein CspC [Lactobacillus plantarum JDM1]
gi|300494779|gb|EFK29937.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308045476|gb|ADN98019.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G DVF+H SA+ G +L EGQ V +D ++D
Sbjct: 1 MEHGTVKWFNADKGFGFITREN----GSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVTK 65
>gi|209517087|ref|ZP_03265934.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295677385|ref|YP_003605909.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|209502480|gb|EEA02489.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295437228|gb|ADG16398.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Q
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|85858086|ref|YP_460288.1| cold shock protein [Syntrophus aciditrophicus SB]
gi|85721177|gb|ABC76120.1| cold shock protein [Syntrophus aciditrophicus SB]
Length = 90
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + G DVF+H SA+ S+G L EGQ V+++
Sbjct: 25 MPEGKVKWFNEQKGFGFIEKD----EGGDVFVHYSAIQSSGFKTLYEGQRVSFEVQTGQK 80
Query: 62 NGKYSAENLKLV 73
+A N+K +
Sbjct: 81 G--PAAVNVKPI 90
>gi|16800469|ref|NP_470737.1| hypothetical protein lin1401 [Listeria innocua Clip11262]
gi|16803404|ref|NP_464889.1| hypothetical protein lmo1364 [Listeria monocytogenes EGD-e]
gi|46907590|ref|YP_013979.1| cold-shock domain-contain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093751|ref|ZP_00231501.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
H7858]
gi|47095947|ref|ZP_00233550.1| cold-shock domain family protein [Listeria monocytogenes str.
1/2a F6854]
gi|116872795|ref|YP_849576.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|217964490|ref|YP_002350168.1| hypothetical protein LMHCC_1207 [Listeria monocytogenes HCC23]
gi|224499943|ref|ZP_03668292.1| hypothetical protein LmonF1_09789 [Listeria monocytogenes Finland
1988]
gi|224501693|ref|ZP_03670000.1| hypothetical protein LmonFR_04122 [Listeria monocytogenes FSL
R2-561]
gi|254824577|ref|ZP_05229578.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
J1-194]
gi|254827625|ref|ZP_05232312.1| cspL [Listeria monocytogenes FSL N3-165]
gi|254829879|ref|ZP_05234534.1| cold shock protein [Listeria monocytogenes 10403S]
gi|254852588|ref|ZP_05241936.1| cspL [Listeria monocytogenes FSL R2-503]
gi|254898471|ref|ZP_05258395.1| cold shock protein [Listeria monocytogenes J0161]
gi|254912038|ref|ZP_05262050.1| CspA protein [Listeria monocytogenes J2818]
gi|254932321|ref|ZP_05265680.1| cspL [Listeria monocytogenes HPB2262]
gi|254936365|ref|ZP_05268062.1| cspL [Listeria monocytogenes F6900]
gi|255027593|ref|ZP_05299579.1| cold shock protein [Listeria monocytogenes FSL J2-003]
gi|255521546|ref|ZP_05388783.1| cold shock protein [Listeria monocytogenes FSL J1-175]
gi|284801749|ref|YP_003413614.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578]
gi|284994891|ref|YP_003416659.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923]
gi|290893527|ref|ZP_06556510.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071]
gi|300765396|ref|ZP_07075378.1| cold-shock domain family protein [Listeria monocytogenes FSL
N1-017]
gi|315303031|ref|ZP_07873741.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|61221523|sp|P0A355|CSPA_LISMO RecName: Full=Cold shock-like protein CspLA; Short=CspL
gi|61221525|sp|P0A356|CSPA_LISIN RecName: Full=Cold shock-like protein CspLA; Short=CspL
gi|12054787|emb|CAC20630.1| cold shock protein L [Listeria monocytogenes]
gi|16410780|emb|CAC99442.1| cspL [Listeria monocytogenes EGD-e]
gi|16413874|emb|CAC96632.1| cspL [Listeria innocua Clip11262]
gi|46880858|gb|AAT04156.1| cold-shock domain family protein [Listeria monocytogenes serotype
4b str. F2365]
gi|47015693|gb|EAL06623.1| cold-shock domain family protein [Listeria monocytogenes str.
1/2a F6854]
gi|47017872|gb|EAL08655.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
H7858]
gi|116741673|emb|CAK20797.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|217333760|gb|ACK39554.1| conserved domain protein [Listeria monocytogenes HCC23]
gi|258600003|gb|EEW13328.1| cspL [Listeria monocytogenes FSL N3-165]
gi|258605901|gb|EEW18509.1| cspL [Listeria monocytogenes FSL R2-503]
gi|258608956|gb|EEW21564.1| cspL [Listeria monocytogenes F6900]
gi|284057311|gb|ADB68252.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578]
gi|284060358|gb|ADB71297.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923]
gi|290556872|gb|EFD90403.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071]
gi|293583877|gb|EFF95909.1| cspL [Listeria monocytogenes HPB2262]
gi|293590004|gb|EFF98338.1| CspA protein [Listeria monocytogenes J2818]
gi|293593815|gb|EFG01576.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
J1-194]
gi|300513833|gb|EFK40898.1| cold-shock domain family protein [Listeria monocytogenes FSL
N1-017]
gi|307570946|emb|CAR84125.1| cold-shock family protein [Listeria monocytogenes L99]
gi|313619068|gb|EFR90876.1| conserved domain protein [Listeria innocua FSL S4-378]
gi|313623888|gb|EFR94003.1| conserved domain protein [Listeria innocua FSL J1-023]
gi|313628598|gb|EFR97021.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|328467502|gb|EGF38571.1| cold shock protein [Listeria monocytogenes 1816]
gi|328475078|gb|EGF45866.1| cold shock protein [Listeria monocytogenes 220]
gi|332311805|gb|EGJ24900.1| Cold shock-like protein CspLA [Listeria monocytogenes str. Scott
A]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D +
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|329116681|ref|ZP_08245398.1| major cold shock protein CspA [Streptococcus parauberis NCFD
2020]
gi|326907086|gb|EGE54000.1| major cold shock protein CspA [Streptococcus parauberis NCFD
2020]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ S G +L EGQ V +D +
Sbjct: 1 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQSNGFKSLDEGQKVEFDVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNIVKL 66
>gi|331694459|ref|YP_004330698.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326949148|gb|AEA22845.1| cold-shock DNA-binding domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI + +G DVF+H SA+ + G L E Q V ++ Q
Sbjct: 1 MPQGTVKWFNAEKGFGFIATDD---NGPDVFVHYSAIQTDGFRTLEENQRVDFEASQGAK 57
Query: 62 NGKYSAENLKLV 73
A++++ +
Sbjct: 58 G--PQADSVRPI 67
>gi|258650835|ref|YP_003199991.1| cold-shock DNA-binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258554060|gb|ACV77002.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
DSM 44233]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP E G DVF+H S + + G +L E Q VTY Q
Sbjct: 1 MAQGTVKWFNAEKGFGFITP---NEGGPDVFVHYSEIQAGGYRSLEENQQVTYTVTQGTK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQATQVTPL 67
>gi|209547690|ref|YP_002279607.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209533446|gb|ACI53381.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 69
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDN---GGADAFVHISAVERAGMRELVEGQKIGFDLERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|167648239|ref|YP_001685902.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
K31]
gi|167350669|gb|ABZ73404.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ +TY+ +++
Sbjct: 1 MATGTVKWFNGTKGFGFIQPDD---GGADVFVHISAVERAGLRGLDEGQKITYELERDNR 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKMSAGQLQ 67
>gi|254512165|ref|ZP_05124232.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
bacterium KLH11]
gi|221535876|gb|EEE38864.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
bacterium KLH11]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ Q+
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-QDGR 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LK +
Sbjct: 57 DGRQMAADLKPL 68
>gi|323339641|ref|ZP_08079913.1| cold-shock domain family protein [Lactobacillus ruminis ATCC
25644]
gi|323092937|gb|EFZ35537.1| cold-shock domain family protein [Lactobacillus ruminis ATCC
25644]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VT+D +
Sbjct: 1 MEQGTVKWFNAEKGYGFITRED----GSDVFVHFSAIQGEGYKSLEEGQHVTFDVEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|156934624|ref|YP_001438540.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC
BAA-894]
gi|156532878|gb|ABU77704.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC
BAA-894]
Length = 76
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + +
Sbjct: 58 GN--HASVIVPLEAEA 71
>gi|92113792|ref|YP_573720.1| cold-shock DNA-binding protein family protein [Chromohalobacter
salexigens DSM 3043]
gi|91796882|gb|ABE59021.1| cold-shock DNA-binding protein family [Chromohalobacter
salexigens DSM 3043]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+PE GDD+F H S + + G +L +GQ V++D Q
Sbjct: 1 MATGTVKWFNDAKGFGFISPED---GGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKK 57
Query: 62 NGKYSAENLKL 72
A N+K
Sbjct: 58 G--LQASNIKP 66
>gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jostii RHA1]
gi|226364145|ref|YP_002781927.1| cold shock protein [Rhodococcus opacus B4]
gi|110821140|gb|ABG96424.1| cold shock protein [Rhodococcus jostii RHA1]
gi|226242634|dbj|BAH52982.1| cold shock protein [Rhodococcus opacus B4]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI P+ DVF+H S ++ +G +L E Q V ++ Q
Sbjct: 1 MAQGVVKWFNSEKGFGFIAPDD---GSADVFVHYSEISGSGYKSLEENQRVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 58 G--PQAQNVRAV 67
>gi|37725743|gb|AAO32341.1| cold shock protein 1 [Streptomyces sp. AA8321]
Length = 65
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVTFDVTQGPK 57
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 58 G--PQAENIT 65
>gi|28870519|ref|NP_793138.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28853767|gb|AAO56833.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 89
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q
Sbjct: 1 MLNGKVKWFNNAKGYGFILEDGKP--DEDLFAHYSAIQMDGYKTLKAGQPVRFEIIQGPK 58
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 59 G--LHAVNIQ 66
>gi|116334505|ref|YP_796032.1| cold shock protein [Lactobacillus brevis ATCC 367]
gi|116099852|gb|ABJ65001.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC
367]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT E G DVF+H SA+ S G L EGQ V+ D Q D
Sbjct: 1 MEQGTVKWFNADKGYGFITLEN----GSDVFVHFSAINSEGFKTLEEGQHVSLDVEQGDR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +V
Sbjct: 57 G--PQAANVSVVD 67
>gi|325168917|ref|YP_004280707.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
gi|325064640|gb|ADY68329.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
Length = 69
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + ++ +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDN---GGADAFVHISAVERAGMRELVEGQKIGFELERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSATNLQ 67
>gi|319936791|ref|ZP_08011203.1| cold shock protein cspD [Coprobacillus sp. 29_1]
gi|319808059|gb|EFW04631.1| cold shock protein cspD [Coprobacillus sp. 29_1]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFIT + G D+F+H +++A G +L EGQ V++D Q D
Sbjct: 1 MNTGKVKWFNSEKGFGFITVD----GGKDIFVHYTSIAGHGYKSLEEGQNVSFDVTQGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 GD--QASNVTVL 66
>gi|187921538|ref|YP_001890570.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|296158545|ref|ZP_06841375.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|187719976|gb|ACD21199.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|295891113|gb|EFG70901.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S V +G +L E Q VT++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEVQGSGFKSLQENQKVTFEVKQGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QAANIQP 66
>gi|328952776|ref|YP_004370110.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328453100|gb|AEB08929.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFI+ E SG DVF+H SA+ + G +L+E Q V ++ VQ
Sbjct: 1 MKENGTVKWFNNSKGFGFISRE----SGPDVFVHHSAIQTDGYRSLSENQAVEFEVVQGP 56
Query: 61 ANGKYSAENLKLV 73
A+N+ ++
Sbjct: 57 KG--VQAQNVVIL 67
>gi|319403844|emb|CBI77430.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
Length = 69
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P DVF+H SAV +GL NL EGQ ++YD +Q+
Sbjct: 1 MSKGTVKWFNTNKGFGFIQPND---GSADVFVHISAVERSGLHNLNEGQKISYDVLQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK++A NL +
Sbjct: 58 SGKFAAGNLSAL 69
>gi|229544336|ref|ZP_04433395.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
gi|229325475|gb|EEN91151.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E GDDVF+H +A+ G L EGQ V++D V+ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIEVE----GGDDVFVHFTAIQGEGFKTLEEGQAVSFDIVEGNR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--PQAANVTKLS 67
>gi|150389414|ref|YP_001319463.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149949276|gb|ABR47804.1| putative cold-shock DNA-binding domain protein [Alkaliphilus
metalliredigens QYMF]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT E GDDVF+H SA+ G L EGQ V ++ +Q D
Sbjct: 1 MEKGTVKWFNSEKGYGFITREN----GDDVFVHFSAITMDGFKTLEEGQAVQFEIIQGDK 56
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 57 G--PQATNVE 64
>gi|85860247|ref|YP_462449.1| cold shock protein [Syntrophus aciditrophicus SB]
gi|85723338|gb|ABC78281.1| cold shock protein [Syntrophus aciditrophicus SB]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G++KW+N KG+GFI + SG+DVF+H SA+ G L E + V++D VQ
Sbjct: 1 MMPEGTVKWFNDSKGFGFIAQD----SGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGA 56
Query: 61 ANGKYSAENLKLV 73
SAEN++ +
Sbjct: 57 KG--PSAENVRKL 67
>gi|256826371|ref|YP_003150331.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
20547]
gi|256689764|gb|ACV07566.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
20547]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI +G GDDVF+H SA+ + G +L E Q V ++ Q
Sbjct: 1 MAQGIVKWFNAEKGFGFIQQDG---GGDDVFVHFSAIQTNGYRSLEENQRVEFEITQGPK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--QQAENV 64
>gi|251798553|ref|YP_003013284.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
gi|247546179|gb|ACT03198.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V ++ V+
Sbjct: 1 METGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSEGFKSLDEGQRVEFNVVKGQR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|296446940|ref|ZP_06888875.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296255507|gb|EFH02599.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 69
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ + +D V+++
Sbjct: 1 MNIGTVKWFNATKGFGFIQPDN---GGADVFVHISAVERAGMQTLAEGQKIQFDLVRDNK 57
Query: 62 NGKYSAENLKL 72
+GK SA NL++
Sbjct: 58 SGKSSAGNLQI 68
>gi|78062001|ref|YP_371909.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
383]
gi|115358813|ref|YP_775951.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|134293656|ref|YP_001117392.1| cold-shock DNA-binding protein family protein [Burkholderia
vietnamiensis G4]
gi|170700879|ref|ZP_02891866.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171318778|ref|ZP_02907917.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172063543|ref|YP_001811194.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|206563659|ref|YP_002234422.1| putative cold shock protein [Burkholderia cenocepacia J2315]
gi|77969886|gb|ABB11265.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
gi|115284101|gb|ABI89617.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
gi|134136813|gb|ABO57927.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
G4]
gi|170134197|gb|EDT02538.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171096010|gb|EDT40941.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171996060|gb|ACB66978.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
gi|198039699|emb|CAR55669.1| putative cold shock protein [Burkholderia cenocepacia J2315]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ GDD+F H S + + G L E Q V+++ Q
Sbjct: 1 MDTGIVKWFNDSKGFGFITPDN---GGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|294101499|ref|YP_003553357.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
gi|293616479|gb|ADE56633.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT E G D F+H SA+ G L EGQ V++D
Sbjct: 1 MTQGTVKWFNGTKGYGFITGED----GKDYFVHFSAIQVDGFKTLDEGQKVSFDIESGQK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--PQAANVKPL 66
>gi|146307418|ref|YP_001187883.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina ymp]
gi|145575619|gb|ABP85151.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
Length = 89
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ VQ
Sbjct: 1 MLSGKVKWFNNAKGYGFILADGR---DEDLFAHYSAIQMDGYKTLKAGQPVRFEIVQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 58 G--LHAVNISAV 67
>gi|332295652|ref|YP_004437575.1| cold-shock DNA-binding domain protein [Thermodesulfobium
narugense DSM 14796]
gi|332178755|gb|AEE14444.1| cold-shock DNA-binding domain protein [Thermodesulfobium
narugense DSM 14796]
Length = 70
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFI+ G+DVF+H SA+ S G +L EGQ VT+D ++
Sbjct: 1 MNKGTVKWFNAEKGYGFISNAN---GGEDVFVHFSAIVSDGFKSLNEGQQVTFDIEKDPK 57
Query: 62 N-GKYSAENLKLV 73
N K A N+K +
Sbjct: 58 NSKKLRAVNVKAL 70
>gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
Length = 106
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 42 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 97
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 98 -PAAVNVVAI 106
>gi|319406855|emb|CBI80490.1| cold shock protein [Bartonella sp. 1-1C]
Length = 69
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P DVF+H SAV +GL NL EGQ ++YD +Q+
Sbjct: 1 MSKGTVKWFNSNKGFGFIQPND---GSADVFVHISAVERSGLQNLNEGQKISYDVLQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK++A NL +
Sbjct: 58 SGKFAAGNLSAL 69
>gi|327481503|gb|AEA84813.1| cold-shock DNA-binding protein [Pseudomonas stutzeri DSM 4166]
Length = 177
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ + SGDDVF+H A+ G L EGQ V + + D
Sbjct: 108 RESGTVKWFNTSKGFGFISRD----SGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDK 163
Query: 62 NGKYSAENLKLVPKS 76
AE++ V +
Sbjct: 164 G--LQAEDVVTVDSA 176
>gi|209520217|ref|ZP_03268987.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|209499333|gb|EDZ99418.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S ++ G L E Q V+Y+ +
Sbjct: 1 MDTGTVKWFNDSKGFGFITPDN---GGDDLFAHFSEISGDGFKTLAENQKVSYETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|251794338|ref|YP_003009069.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
gi|247541964|gb|ACS98982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ VQ +
Sbjct: 1 MEQGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKSLDEGQRVEFNIVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|110834144|ref|YP_693003.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
gi|110647255|emb|CAL16731.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
Length = 84
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGF+ P+ E G+D+F+H S + G +L GQ V YD +
Sbjct: 1 MATGRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYDVQPANK 57
Query: 62 NGKYSAENLKLVPKSSN 78
Y A NL+ ++SN
Sbjct: 58 G--YHAINLRTDEEASN 72
>gi|294630558|ref|ZP_06709118.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292833891|gb|EFF92240.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAAQGFRELQEGQRVNFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|226310435|ref|YP_002770329.1| cold shock protein [Brevibacillus brevis NBRC 100599]
gi|226093383|dbj|BAH41825.1| cold shock protein [Brevibacillus brevis NBRC 100599]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E +DVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----GKEDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 57 G--PQATNVQKV 66
>gi|319944075|ref|ZP_08018354.1| cold shock transcription regulator protein [Lautropia mirabilis
ATCC 51599]
gi|319742652|gb|EFV95060.1| cold shock transcription regulator protein [Lautropia mirabilis
ATCC 51599]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H S+V + G L EGQ V++D VQ
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSSVQTQGFKTLKEGQKVSFDVVQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 GK--QASNI 64
>gi|226308783|ref|YP_002768743.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|229488570|ref|ZP_04382436.1| putative cold-shock DNA-binding domain protein [Rhodococcus
erythropolis SK121]
gi|226187900|dbj|BAH36004.1| probable cold shock protein [Rhodococcus erythropolis PR4]
gi|229324074|gb|EEN89829.1| putative cold-shock DNA-binding domain protein [Rhodococcus
erythropolis SK121]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI P+ DVF+H S ++ G +L E Q V ++ Q
Sbjct: 1 MAQGIVKWFNGEKGFGFIAPDD---GTPDVFVHYSEISGNGYKSLDENQRVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--PQATNVRAV 67
>gi|75674509|ref|YP_316930.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|85713497|ref|ZP_01044487.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|74419379|gb|ABA03578.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
gi|85699401|gb|EAQ37268.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V + +GK
Sbjct: 2 GTVKWFNATKGYGFIQPDD---GGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 58
Query: 65 YSAENLK 71
SA+NL+
Sbjct: 59 SSADNLR 65
>gi|298292879|ref|YP_003694818.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296929390|gb|ADH90199.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 70
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ +L EGQ V ++ V +
Sbjct: 1 MTTGTVKWFNSQKGFGFIAPDD---GGSDAFVHISAVERAGMSDLREGQKVDFELVADQR 57
Query: 62 NGKYSAENLK 71
+GK SA+ L+
Sbjct: 58 SGKMSADKLQ 67
>gi|332974564|gb|EGK11484.1| cold shock transcription regulator protein [Kingella kingae ATCC
23330]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIQ 65
>gi|260102778|ref|ZP_05753015.1| conserved hypothetical protein [Lactobacillus helveticus DSM
20075]
gi|260083418|gb|EEW67538.1| conserved hypothetical protein [Lactobacillus helveticus DSM
20075]
Length = 67
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT + DVF+H SA+ + G +L EGQ V+YD Q
Sbjct: 1 MQTGTVKWFNADKGFGFIT---GSSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGSR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--PQATNV 64
>gi|254470899|ref|ZP_05084302.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
sp. JE062]
gi|211960041|gb|EEA95238.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
sp. JE062]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PE DVF+H SAV +GL L +GQ VT++ +
Sbjct: 1 MAKGTVKWFNTTKGFGFIAPED---GSKDVFVHISAVERSGLSTLADGQEVTFEL-ETGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NL+ V
Sbjct: 57 DGRQSAVNLETV 68
>gi|188996315|ref|YP_001930566.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|225848260|ref|YP_002728423.1| hypothetical protein SULAZ_0431 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|188931382|gb|ACD66012.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|225643394|gb|ACN98444.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFIT + DVF+H SA+ S G L EGQ V ++ Q++
Sbjct: 1 MRITGTVKWFNSKKGFGFITRDD---GQGDVFVHFSAIQSRGFKTLEEGQKVEFEIAQDE 57
Query: 61 ANGKYSAENLKL 72
K +A +++
Sbjct: 58 KGPK-AANVVRV 68
>gi|126731182|ref|ZP_01746990.1| cold shock family protein [Sagittula stellata E-37]
gi|126708484|gb|EBA07542.1| cold shock family protein [Sagittula stellata E-37]
Length = 68
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ Q
Sbjct: 1 MAKGTVKWFNTTKGYGFIQPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-QTGR 56
Query: 62 NGKYSAENLKLV 73
+GK SA NL+L+
Sbjct: 57 DGKQSAGNLELL 68
>gi|260461754|ref|ZP_05810000.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|319785303|ref|YP_004144779.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|259032395|gb|EEW33660.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|317171191|gb|ADV14729.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 70
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ + Y+ Q+
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDN---GGQDVFVHISAVERAGLSTLNEGQKINYEVEQDRR 57
Query: 62 NGKYSAENLKL 72
GK SA +L
Sbjct: 58 TGKSSAGSLSK 68
>gi|199598334|ref|ZP_03211754.1| Cold shock protein [Lactobacillus rhamnosus HN001]
gi|258508067|ref|YP_003170818.1| CspA family cold shock protein_ [Lactobacillus rhamnosus GG]
gi|258539340|ref|YP_003173839.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
gi|199590787|gb|EDY98873.1| Cold shock protein [Lactobacillus rhamnosus HN001]
gi|257147994|emb|CAR86967.1| Cold shock protein [Lactobacillus rhamnosus GG]
gi|257151016|emb|CAR89988.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
gi|259649389|dbj|BAI41551.1| cold shock protein [Lactobacillus rhamnosus GG]
Length = 66
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D
Sbjct: 1 MEHGTVKWFNAEKGYGFITRED----GSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|324998904|ref|ZP_08120016.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
sp. P1]
Length = 67
Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGF+ P+G G DVF+H SA+ + G L EGQ V++D Q
Sbjct: 1 MAEGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQTQGYKTLDEGQRVSFDIEQGQK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQASGVTPL 67
>gi|304408316|ref|ZP_07389964.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304342785|gb|EFM08631.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF+H SA+ G L EGQ V + Q +
Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGDGFKTLDEGQRVEFTIAQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|283784647|ref|YP_003364512.1| cold shock-like protein CspD [Citrobacter rodentium ICC168]
gi|282948101|emb|CBG87666.1| cold shock-like protein CspD [Citrobacter rodentium ICC168]
Length = 73
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVQFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + +
Sbjct: 58 GN--HASVIVPIEAEA 71
>gi|270261164|ref|ZP_06189437.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13]
gi|270044648|gb|EFA17739.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13]
Length = 73
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V++D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|238789632|ref|ZP_04633415.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641]
gi|238722185|gb|EEQ13842.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641]
Length = 85
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|260425469|ref|ZP_05779449.1| conserved domain protein [Citreicella sp. SE45]
gi|260423409|gb|EEX16659.1| conserved domain protein [Citreicella sp. SE45]
Length = 68
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVF+H SA+ +GL L +GQ VT+D ++
Sbjct: 1 MATGTVKWFNTTKGFGFIEPEN---GSRDVFVHISALQRSGLDRLEDGQKVTFDV-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ +A NL L
Sbjct: 57 DGRENANNLAL 67
>gi|302544963|ref|ZP_07297305.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|302462581|gb|EFL25674.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
Length = 68
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI EG G DVF+H S++ G +L + Q V + VQ
Sbjct: 1 MAQGTVKWFNAEKGYGFIAQEG---GGPDVFVHYSSINGNGYRSLADDQRVEFQIVQGRK 57
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 58 G--PQAEEVRVL 67
>gi|126731183|ref|ZP_01746991.1| cold shock family protein [Sagittula stellata E-37]
gi|126708485|gb|EBA07543.1| cold shock family protein [Sagittula stellata E-37]
Length = 68
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ Q
Sbjct: 1 MATGTVKWFNTTKGYGFIQPES---GGKDVFVHISAVERSGLTGLADNQKVSYEL-QTGR 56
Query: 62 NGKYSAENLKLV 73
+GK SA NL+L+
Sbjct: 57 DGKESAGNLELL 68
>gi|85714683|ref|ZP_01045670.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|85698568|gb|EAQ36438.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
Length = 90
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ VT++ +
Sbjct: 22 MTTGTVKWFNGQKGFGFIQPNN---GGNDVFVHISAVERAGLSGLNEGQQVTFEVKTDKM 78
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 79 RGKVSAENLSL 89
>gi|326491571|dbj|BAJ94263.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 191
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+P+ +D+F+H+S++ + G +L EG++V + + D +G
Sbjct: 8 KGTVKWFNDTKGFGFISPDD---GSEDLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 64 RTKAVDVT 71
>gi|310639812|ref|YP_003944570.1| cold shock-like protein csplb [Paenibacillus polymyxa SC2]
gi|309244762|gb|ADO54329.1| Cold shock-like protein cspLB [Paenibacillus polymyxa SC2]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V ++ V+ +
Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGEGFKSLDEGQRVEFNVVEGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
20306]
gi|295968981|gb|EFG82224.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
20306]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + G L E Q V+++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGNGFRTLEENQQVSFEIGEGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQATNVNAL 67
>gi|312200428|ref|YP_004020489.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
gi|311231764|gb|ADP84619.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H SA+ + G +L EGQ V ++ VQ
Sbjct: 1 MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHFSAILTDGYKSLDEGQSVQFEIVQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 58 G--PQADKVQPV 67
>gi|325676595|ref|ZP_08156273.1| cold shock transcription regulator protein [Rhodococcus equi ATCC
33707]
gi|325552773|gb|EGD22457.1| cold shock transcription regulator protein [Rhodococcus equi ATCC
33707]
Length = 98
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF H S + G +L E Q V+YD Q
Sbjct: 32 MANGTVKWFNAEKGFGFIAPED---GSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAK 88
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 89 G--PQATNITAI 98
>gi|72383861|ref|YP_293215.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72123204|gb|AAZ65358.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S V +G +L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGDDLFAHFSEVQGSGFKSLQEGQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A +K +
Sbjct: 58 GK--QAATIKPL 67
>gi|330503289|ref|YP_004380158.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
gi|328917575|gb|AEB58406.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
Length = 95
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ VQ
Sbjct: 7 MLSGKVKWFNNAKGYGFILADGR---DEDLFAHYSAIQMDGYKTLKAGQPVRFEIVQGPK 63
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 64 G--LHAVNIS 71
>gi|158321031|ref|YP_001513538.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
oremlandii OhILAs]
gi|158141230|gb|ABW19542.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI+ E GDDVF+H SA+ G L EGQ V ++ VQ D
Sbjct: 1 MEKGTVKWFNSEKGYGFISREN----GDDVFVHYSAITMDGFKTLEEGQAVNFEIVQGDK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--PQATNVT 64
>gi|254391125|ref|ZP_05006332.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|294814384|ref|ZP_06773027.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064]
gi|326442775|ref|ZP_08217509.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|197704819|gb|EDY50631.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
gi|294326983|gb|EFG08626.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q+V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENVSP 66
>gi|312200656|ref|YP_004020717.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
gi|311231992|gb|ADP84847.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H SA+ G +L EGQ V + Q
Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQADGVRAI 67
>gi|257068250|ref|YP_003154505.1| cold-shock DNA-binding protein family [Brachybacterium faecium
DSM 4810]
gi|256559068|gb|ACU84915.1| cold-shock DNA-binding protein family [Brachybacterium faecium
DSM 4810]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N +KGYGFI +G G DVF+H S + G L EGQ V ++ Q D
Sbjct: 1 MAQGSVKWFNAEKGYGFIEIDG---GGADVFVHHSKIDMDGYRALDEGQRVEFEVSQGDK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEQVRPL 67
>gi|20302392|emb|CAC80094.1| cold shock protein [Staphylococcus aureus]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DV +H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVLVHFSAINQDGYKSLEEGQAVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|325267631|ref|ZP_08134283.1| cold shock transcription regulator protein [Kingella
denitrificans ATCC 33394]
gi|324980981|gb|EGC16641.1| cold shock transcription regulator protein [Kingella
denitrificans ATCC 33394]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|213970046|ref|ZP_03398178.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
T1]
gi|213925150|gb|EEB58713.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
T1]
Length = 89
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q
Sbjct: 1 MLNGKVKWFNNAKGYGFILEDGKP--NEDLFAHYSAIQMDGYKTLKAGQSVRFEIIQGPK 58
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 59 G--LHAVNIQ 66
>gi|257869999|ref|ZP_05649652.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
gi|257804163|gb|EEV32985.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D ++D
Sbjct: 1 MEQGTVKWFNAEKGFGFISRED----GTDVFVHFSAIQGEGFKTLEEGQAVTFDVEESDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|226311237|ref|YP_002771131.1| cold shock protein [Brevibacillus brevis NBRC 100599]
gi|226094185|dbj|BAH42627.1| cold shock protein [Brevibacillus brevis NBRC 100599]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KG+GFI + GDDVF+H SA+ G +L EGQ V +D
Sbjct: 1 MERGRVKWFNSEKGFGFIERD----GGDDVFVHFSAIQGEGYKSLDEGQEVEFDVENGQR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--PQATNVRKL 66
>gi|222086901|ref|YP_002545435.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221724349|gb|ACM27505.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 69
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ +L +GQ ++Y+ V++
Sbjct: 1 MSTGTVKWFNAAKGFGFIQPDD---GATDVFVHISAVERAGMSSLRDGQKISYELVKDKR 57
Query: 62 NGKYSAENLK 71
+GK SA+ L+
Sbjct: 58 SGKMSADQLE 67
>gi|33592839|ref|NP_880483.1| cold shock-like protein [Bordetella pertussis Tohama I]
gi|33572487|emb|CAE42059.1| cold shock-like protein [Bordetella pertussis Tohama I]
gi|332382252|gb|AEE67099.1| cold shock-like protein [Bordetella pertussis CS]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI P+ D+F H S + S G +L E Q V+++ Q
Sbjct: 1 MATGIVKWFNAEKGYGFIMPDD---GSKDLFAHYSEICSEGYKSLQENQRVSFEVGQGPK 57
Query: 62 NGKYSA 67
+ A
Sbjct: 58 GPRGQA 63
>gi|312880250|ref|ZP_07740050.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
12260]
gi|310783541|gb|EFQ23939.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
12260]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KGYGFIT E G DVF+H SA+ G L EGQ V+++ Q
Sbjct: 1 MKTNGTVKWFNATKGYGFITTED----GKDVFVHFSAIQGDGFKTLDEGQRVSFEVTQGS 56
Query: 61 ANGKYSAENLKLV 73
A +++ +
Sbjct: 57 KG--PQASDVEKL 67
>gi|257095586|ref|YP_003169227.1| cold-shock DNA-binding domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257048110|gb|ACV37298.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H SA+ G L EG+ V++D Q
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GSEDLFAHFSAITMGGFKTLKEGEKVSFDVTQGPK 57
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 58 GK--QASNIS 65
>gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF+H S + G L E Q V ++
Sbjct: 1 MATGTVKWFNAEKGFGFIAPDD---GSADVFVHYSEIQGNGFRTLEENQQVEFEIGDGAK 57
Query: 62 NGKYSAE 68
+ A
Sbjct: 58 GPQAQAV 64
>gi|294499467|ref|YP_003563167.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295704817|ref|YP_003597892.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294349404|gb|ADE69733.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294802476|gb|ADF39542.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D +
Sbjct: 1 MEKGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSEGFKSLDEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|238792422|ref|ZP_04636056.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909]
gi|238728348|gb|EEQ19868.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909]
Length = 85
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|254502104|ref|ZP_05114255.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222438175|gb|EEE44854.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 69
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KGYGFI PE +DVF+H SAV AGL L EG V+++ VQ+
Sbjct: 1 MTIGTVKFFNSTKGYGFIQPED---GSNDVFVHISAVERAGLATLNEGDKVSFEVVQDRR 57
Query: 62 NGKYSAENLK 71
+GK +A+NL
Sbjct: 58 SGKSAADNLS 67
>gi|294787952|ref|ZP_06753196.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453]
gi|294484245|gb|EFG31928.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFEVTTGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|16759816|ref|NP_455433.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16764305|ref|NP_459920.1| stress response protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142411|ref|NP_805753.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56414004|ref|YP_151079.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62179468|ref|YP_215885.1| CspA-like protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|157146440|ref|YP_001453759.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895]
gi|161503927|ref|YP_001571039.1| hypothetical protein SARI_02018 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161614826|ref|YP_001588791.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550382|ref|ZP_02344139.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168230817|ref|ZP_02655875.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236854|ref|ZP_02661912.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168240791|ref|ZP_02665723.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168263571|ref|ZP_02685544.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168466527|ref|ZP_02700389.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819926|ref|ZP_02831926.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194446783|ref|YP_002040144.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451466|ref|YP_002044937.1| cold shock domain-containing protein CspD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194470525|ref|ZP_03076509.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734305|ref|YP_002114000.1| cold shock domain-containing protein CspD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197248616|ref|YP_002145861.1| cold shock domain-containing protein CspD [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197264137|ref|ZP_03164211.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362927|ref|YP_002142564.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198245012|ref|YP_002214871.1| cold shock domain-containing protein CspD [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200391092|ref|ZP_03217703.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204930059|ref|ZP_03221080.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205352154|ref|YP_002225955.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856338|ref|YP_002242989.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213053362|ref|ZP_03346240.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213419933|ref|ZP_03352999.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213428023|ref|ZP_03360773.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213581371|ref|ZP_03363197.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213620716|ref|ZP_03373499.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213649853|ref|ZP_03379906.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213865355|ref|ZP_03387474.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224582755|ref|YP_002636553.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238913423|ref|ZP_04657260.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289805674|ref|ZP_06536303.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289825001|ref|ZP_06544364.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25296125|pir||AG0609 cold shock-like protein CspD [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16419455|gb|AAL19879.1| CspA-like protein but not cold shock induced [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16502109|emb|CAD05345.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138041|gb|AAO69602.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128261|gb|AAV77767.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62127101|gb|AAX64804.1| CspA-like protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|157083645|gb|ABV13323.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895]
gi|160865274|gb|ABX21897.1| hypothetical protein SARI_02018 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161364190|gb|ABX67958.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405446|gb|ACF65668.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409770|gb|ACF69989.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194456889|gb|EDX45728.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194709807|gb|ACF89028.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195630992|gb|EDX49578.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094404|emb|CAR59920.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212319|gb|ACH49716.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242392|gb|EDY25012.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290126|gb|EDY29483.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939528|gb|ACH76861.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603537|gb|EDZ02083.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321053|gb|EDZ06254.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205271935|emb|CAR36779.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205324550|gb|EDZ12389.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205334822|gb|EDZ21586.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339865|gb|EDZ26629.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343272|gb|EDZ30036.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347672|gb|EDZ34303.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708141|emb|CAR32434.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467282|gb|ACN45112.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261246160|emb|CBG23964.1| cold shock-like protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992672|gb|ACY87557.1| stress response protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157488|emb|CBW16978.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911933|dbj|BAJ35907.1| cold shock protein CspD [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320085180|emb|CBY94967.1| Cold shock-like protein cspD [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321223268|gb|EFX48337.1| Cold shock protein CspD [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616380|gb|EFY13289.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619630|gb|EFY16505.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622674|gb|EFY19519.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628587|gb|EFY25374.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631523|gb|EFY28279.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637050|gb|EFY33753.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641752|gb|EFY38388.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644456|gb|EFY40996.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649574|gb|EFY46005.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654124|gb|EFY50447.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658039|gb|EFY54306.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663513|gb|EFY59715.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670249|gb|EFY66389.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671485|gb|EFY67607.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676841|gb|EFY72908.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682766|gb|EFY78785.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686445|gb|EFY82427.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322713938|gb|EFZ05509.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323129210|gb|ADX16640.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323196101|gb|EFZ81264.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196753|gb|EFZ81897.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202967|gb|EFZ88001.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209008|gb|EFZ93945.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211913|gb|EFZ96741.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215155|gb|EFZ99900.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222358|gb|EGA06736.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226879|gb|EGA11062.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229833|gb|EGA13956.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233058|gb|EGA17154.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240793|gb|EGA24835.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243110|gb|EGA27130.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247431|gb|EGA31387.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251653|gb|EGA35520.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257359|gb|EGA41057.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261948|gb|EGA45514.1| cold shock domain protein CspD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267963|gb|EGA51442.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271970|gb|EGA55385.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326622624|gb|EGE28969.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326627198|gb|EGE33541.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332987837|gb|AEF06820.1| stress response protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 73
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + +
Sbjct: 58 GN--HASVIVPIEAEA 71
>gi|301381401|ref|ZP_07229819.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
Max13]
gi|302058399|ref|ZP_07249940.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
K40]
gi|302130352|ref|ZP_07256342.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 91
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q
Sbjct: 3 MLNGKVKWFNNAKGYGFILEDGKP--NEDLFAHYSAIQMDGYKTLKAGQSVRFEIIQGPK 60
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 61 G--LHAVNIQ 68
>gi|154253600|ref|YP_001414424.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157550|gb|ABS64767.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 69
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AG+ +L EGQ + YD +
Sbjct: 1 MANGTVKWFNSQKGFGFIQPDG---GDKDVFVHISAVERAGMSSLNEGQKIGYDLETDQR 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKVSAANLR 67
>gi|72160788|ref|YP_288445.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
YX]
gi|71914520|gb|AAZ54422.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF+H SA+A G NL E Q V ++ V
Sbjct: 1 MAQGTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIAGTGFRNLEENQAVEFEIVPGPK 57
Query: 62 NGKYSAENLKLV 73
A +++ +
Sbjct: 58 G--PQAADVRAL 67
>gi|213024594|ref|ZP_03339041.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 71
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + +
Sbjct: 58 GN--HASVIVPIEAEA 71
>gi|238028419|ref|YP_002912650.1| Cold shock transcription regulator protein [Burkholderia glumae
BGR1]
gi|330818078|ref|YP_004361783.1| Cold shock transcription regulator protein [Burkholderia gladioli
BSR3]
gi|237877613|gb|ACR29946.1| Cold shock transcription regulator protein [Burkholderia glumae
BGR1]
gi|327370471|gb|AEA61827.1| Cold shock transcription regulator protein [Burkholderia gladioli
BSR3]
Length = 73
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ
Sbjct: 7 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 63
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 64 GK--QASNIQ 71
>gi|326384649|ref|ZP_08206327.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326196616|gb|EGD53812.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ G+DVF+H SA+A +G NL E Q V +D Q
Sbjct: 1 MTQGTVKWFNGEKGFGFIAPDN---GGEDVFVHFSAIAGSGFRNLEEAQRVEFDLEQGAK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQATNVTAI 67
>gi|301058337|ref|ZP_07199370.1| cold-shock DNA-binding domain protein [delta proteobacterium
NaphS2]
gi|300447573|gb|EFK11305.1| cold-shock DNA-binding domain protein [delta proteobacterium
NaphS2]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G DVF+H SA+ +AG +L EG+ VT+D Q
Sbjct: 1 MANGTVKWFNDQKGFGFIEQED----GPDVFVHHSAINAAGFKSLNEGERVTFDIEQGPK 56
Query: 62 NGKYSAENLKLV 73
SA N+ V
Sbjct: 57 G--LSAANVTAV 66
>gi|187921398|ref|YP_001890430.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|187719836|gb|ACD21059.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|1864167|gb|AAB48629.1| major cold-shock protein homolog CspB [Listeria monocytogenes]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDD+F+H SA+ G L EGQ V ++ V+
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDIFVHFSAIEGEGFKTLDEGQSVEFEIVEGQR 56
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 57 G--PQAEKVTKL 66
>gi|16126859|ref|NP_421423.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
gi|221235641|ref|YP_002518078.1| cold shock protein [Caulobacter crescentus NA1000]
gi|13424199|gb|AAK24591.1| cold-shock domain family protein [Caulobacter crescentus CB15]
gi|220964814|gb|ACL96170.1| cold shock protein [Caulobacter crescentus NA1000]
Length = 69
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+NP KG+GFI PE G DVF+H +AV +GL L EG V Y+ ++
Sbjct: 1 MANGVVKWFNPAKGFGFIQPED---GGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA NL+++
Sbjct: 58 SGKTSAGNLRIL 69
>gi|41052630|dbj|BAD08139.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|41052743|dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|125580606|gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group]
gi|187609561|gb|ACD13288.1| cold shock domain protein 1 [Oryza sativa Japonica Group]
gi|215767546|dbj|BAG99774.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
HRG++KW+N KG+GFI+P+ +D+F+H+S++ + G +L EG+ V + +++
Sbjct: 6 RHRGTVKWFNDTKGFGFISPDD---GSEDLFVHQSSIKADGFRSLAEGEQVEFAISESE- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|78065067|ref|YP_367836.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
383]
gi|107024146|ref|YP_622473.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|115350462|ref|YP_772301.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|116688527|ref|YP_834150.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|134294597|ref|YP_001118332.1| cold-shock DNA-binding protein family protein [Burkholderia
vietnamiensis G4]
gi|170701451|ref|ZP_02892407.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|170731829|ref|YP_001763776.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|171319075|ref|ZP_02908199.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172059495|ref|YP_001807147.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|206558773|ref|YP_002229533.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315]
gi|254246471|ref|ZP_04939792.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
gi|254253382|ref|ZP_04946700.1| Cold-shock protein [Burkholderia dolosa AUO158]
gi|77965812|gb|ABB07192.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
gi|105894335|gb|ABF77500.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
AU 1054]
gi|115280450|gb|ABI85967.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
gi|116646616|gb|ABK07257.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
gi|124871247|gb|EAY62963.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
gi|124895991|gb|EAY69871.1| Cold-shock protein [Burkholderia dolosa AUO158]
gi|134137754|gb|ABO53497.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
G4]
gi|169815071|gb|ACA89654.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
gi|170133648|gb|EDT02020.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171095714|gb|EDT40670.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171992012|gb|ACB62931.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
gi|198034810|emb|CAR50678.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++
Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--LQAANIRPV 67
>gi|242373700|ref|ZP_04819274.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1]
gi|242348668|gb|EES40270.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1]
Length = 77
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 66
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 67 RG--PQAANVVKL 77
>gi|163736844|ref|ZP_02144262.1| cold shock family protein [Phaeobacter gallaeciensis BS107]
gi|163743998|ref|ZP_02151367.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
gi|161382758|gb|EDQ07158.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
gi|161389448|gb|EDQ13799.1| cold shock family protein [Phaeobacter gallaeciensis BS107]
Length = 68
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q VTY+ Q
Sbjct: 1 MATGTVKWFNTTKGYGFIAPD---AGGSDVFVHISAVERSGLTGLADNQKVTYEL-QPGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N++L
Sbjct: 57 DGRESAVNIEL 67
>gi|158317202|ref|YP_001509710.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|158112607|gb|ABW14804.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length = 94
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFI+ +G G DVF H S++ G +L EGQ V++D Q
Sbjct: 30 GTVKWFNAEKGFGFISVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFDIEQGQKG-- 84
Query: 65 YSAENLKLVP 74
A ++ +
Sbjct: 85 PQAAKVQPLS 94
>gi|312870567|ref|ZP_07730683.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
gi|311093907|gb|EFQ52235.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFI+ E SGDDVF+H SA+ G +L EGQ V++D + D
Sbjct: 1 MEQGTVKWFNNDKGYGFISRE----SGDDVFVHFSAIQGEGFKSLDEGQKVSFDVEEGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAVNV 63
>gi|304406586|ref|ZP_07388242.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304344644|gb|EFM10482.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF+H SA+ G L EGQ V ++ VQ +
Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGEGFKTLDEGQRVEFNVVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|331695978|ref|YP_004332217.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326950667|gb|AEA24364.1| cold-shock DNA-binding domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 68
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGF+ P+G G DVF+H SA+ G +L EGQ V++D Q
Sbjct: 1 MAEGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQVNGYKSLDEGQRVSFDIEQGQK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQATKVTPI 67
>gi|169827740|ref|YP_001697898.1| cold shock protein [Lysinibacillus sphaericus C3-41]
gi|168992228|gb|ACA39768.1| Cold shock protein [Lysinibacillus sphaericus C3-41]
Length = 68
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ +
Sbjct: 2 LMQQGIVKWFNNEKGYGFIECDD----GEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN 57
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 58 RG--PQASNVVKL 68
>gi|157691252|ref|YP_001485714.1| cold-shock protein [Bacillus pumilus SAFR-032]
gi|157680010|gb|ABV61154.1| cold-shock protein [Bacillus pumilus SAFR-032]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V++D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----EGDDVFVHFSAIQGDGFKSLDEGQKVSFDVEQGSR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--AQAANVQKI 66
>gi|110835605|ref|YP_694464.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
gi|110648716|emb|CAL18192.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
Length = 67
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ + G DVF+H SA+ +G L EGQ V+++ Q
Sbjct: 1 MATGTVKWFNESKGFGFISQDD---GGADVFVHFSAITGSGFKTLAEGQKVSFEIQQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--PQAANV 64
>gi|289435359|ref|YP_003465231.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|315283050|ref|ZP_07871326.1| putative cold-shock protein [Listeria marthii FSL S4-120]
gi|315304007|ref|ZP_07874446.1| putative cold-shock protein [Listeria ivanovii FSL F6-596]
gi|289171603|emb|CBH28149.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|313613309|gb|EFR87177.1| putative cold-shock protein [Listeria marthii FSL S4-120]
gi|313627624|gb|EFR96318.1| putative cold-shock protein [Listeria ivanovii FSL F6-596]
Length = 66
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGDGFKTLDEGQSVEFEIVEGQR 56
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 57 G--PQAEKVTKL 66
>gi|331702398|ref|YP_004399357.1| cold-shock DNA-binding domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329129741|gb|AEB74294.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri
NRRL B-30929]
Length = 67
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT + DVF+H SA+ G +L EGQ VT D +D
Sbjct: 1 MKQGTVKWFNADKGYGFITTDDG-----DVFVHFSAINKDGFKSLDEGQKVTLDVEDSDR 55
Query: 62 NGKYSAENLKLVPK 75
A N+ +
Sbjct: 56 G--PQAANVTPIED 67
>gi|307544234|ref|YP_003896713.1| cold shock protein CspA [Halomonas elongata DSM 2581]
gi|307216258|emb|CBV41528.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
elongata DSM 2581]
Length = 68
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P GDDVF H S + + G +L EGQ V++D Q
Sbjct: 1 MTTGTVKWFNDSKGFGFISPAD---GGDDVFAHFSEIQAEGFKSLQEGQSVSFDVTQGKK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQASNIKAL 67
>gi|225427973|ref|XP_002277628.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 214
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ GDD+F+H+S++ S G +L EG+ V + V++ +G
Sbjct: 5 TGTVKWFNDQKGFGFITPDD---GGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 61 RTKAVDVT 68
>gi|21322752|dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum]
Length = 229
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+PE +D+F+H+SA+ S G +L E V ++ + D +G
Sbjct: 6 KGTVKWFNVTKGFGFISPED---GSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGD-DG 61
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 62 RTKASDVT 69
>gi|332286174|ref|YP_004418085.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
gi|330430127|gb|AEC21461.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
Length = 68
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N DKG+GFITP+ G DVF H SA+ G +L EGQ V ++
Sbjct: 1 MAQKGKVKWFNADKGFGFITPD---AGGTDVFAHFSAIEGRGYRSLNEGQEVEFEVKDGP 57
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 58 KG--PQAAEIRPL 68
>gi|323488057|ref|ZP_08093310.1| cold shock protein [Planococcus donghaensis MPA1U2]
gi|323398325|gb|EGA91118.1| cold shock protein [Planococcus donghaensis MPA1U2]
Length = 66
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ + +
Sbjct: 1 MQEGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLDEGQRVEFEVEEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--PQATNVTKV 66
>gi|224370369|ref|YP_002604533.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
gi|223693086|gb|ACN16369.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
Length = 86
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G+D+F+H S++ + G +L EG VT+D Q
Sbjct: 21 MANGTVKWFNDSKGFGFIEQEN----GEDLFVHHSSINATGFKSLNEGDKVTFDVEQGQK 76
Query: 62 NGKYSAENLKLV 73
+A N+ +V
Sbjct: 77 G--PAAGNVTVV 86
>gi|167565863|ref|ZP_02358779.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
EO147]
gi|167574414|ref|ZP_02367288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
C6786]
Length = 67
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+Y+ +
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSYETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQASNITPL 67
>gi|134098028|ref|YP_001103689.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291007208|ref|ZP_06565181.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133910651|emb|CAM00764.1| cold-shock DNA-binding domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 67
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+G G DVF+H SA+ G L E Q VT++ Q
Sbjct: 1 MAQGTVKWFNSEKGFGFIAPDG---GGADVFVHYSAIEGNGFRTLEENQTVTFEITQGQK 57
Query: 62 NGKYSAENLKLV 73
A +++V
Sbjct: 58 G--PQASGVRVV 67
>gi|307331134|ref|ZP_07610261.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306883214|gb|EFN14273.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 69
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI E G DVF+H S++ +G +L + Q V + VQ
Sbjct: 1 MAQGTVKWFNAEKGYGFIAQED---GGPDVFVHYSSIDGSGYRSLVDEQRVEFQIVQGRK 57
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 58 G--PQAEEVRIL 67
>gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhizophila DC2201]
gi|183580863|dbj|BAG29334.1| cold shock protein [Kocuria rhizophila DC2201]
Length = 67
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ + DVF+H S + S G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDA---DGDVFVHYSEIQSGGFRTLEENQRVEFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A + ++
Sbjct: 58 G--PQATGVTVI 67
>gi|39936462|ref|NP_948738.1| cold shock DNA binding protein [Rhodopseudomonas palustris
CGA009]
gi|39650318|emb|CAE28840.1| cold shock DNA binding protein [Rhodopseudomonas palustris
CGA009]
Length = 75
Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ V+++ +
Sbjct: 7 MTTGTVKWFNGQKGFGFIAPSD---GGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKM 63
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 64 RGKSSAENLAL 74
>gi|307332024|ref|ZP_07611115.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306882305|gb|EFN13400.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 69
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +E G DVF+H SA+ S G L EG+ VT++ Q
Sbjct: 1 MATGTVKWFNAEKGFGFIAQ---SEGGPDVFVHYSAINSRGFRELNEGERVTFEVQQGQK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 G--PQAANVE 65
>gi|291546919|emb|CBL20027.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD +
Sbjct: 1 MNKGTVKWFNAEKGYGFITGED----GQDVFVHFSAINGEGFKSLEEGQAVSYDLTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--MQAANVTKL 66
>gi|269956067|ref|YP_003325856.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269304748|gb|ACZ30298.1| cold-shock DNA-binding domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N +KGYGFI +G G DVF+H SA+ S G +L E Q V ++ Q
Sbjct: 1 MAQGSVKWFNAEKGYGFIAQDG---GGADVFVHYSAIQSNGYRSLEEAQRVEFEITQGPK 57
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 58 G--PQAEQVVPL 67
>gi|121602065|ref|YP_989256.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
KC583]
gi|120614242|gb|ABM44843.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
KC583]
Length = 69
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P DVF+H SAV +GL +L EGQ ++Y+ +++
Sbjct: 1 MSTGIVKWFNATKGFGFIQPND---GSADVFVHISAVERSGLNSLNEGQKISYEVLKDQR 57
Query: 62 NGKYSAENLKLV 73
+GK+SA NL +
Sbjct: 58 SGKFSAGNLSAL 69
>gi|308049339|ref|YP_003912905.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
9799]
gi|307631529|gb|ADN75831.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
9799]
Length = 69
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N DKG+GFIT + G DVF+H A+ G L EGQ V++D Q
Sbjct: 4 ATGTVKWFNEDKGFGFITQDN---GGADVFVHFRAIQGDGFKTLAEGQQVSFDIEQGPKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --PQAANVTKI 69
>gi|299892776|gb|ADJ57697.1| cold shock protein [Caulobacter crescentus NA1000]
Length = 176
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V Y+ Q+ +G
Sbjct: 110 TGVVKWFNTTKGFGFIQPDN---GGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSG 166
Query: 64 KYSAENLKLV 73
K SA NL+++
Sbjct: 167 KTSAGNLRIL 176
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+NP KG+GFI PE G DVF+H +AV +GL L EG V Y+ ++
Sbjct: 1 MANGVVKWFNPAKGFGFIQPED---GGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57
Query: 62 NGKYSAENLKL 72
+GK SA L++
Sbjct: 58 SGKTSAGQLRV 68
>gi|259502488|ref|ZP_05745390.1| cold-shock domain family protein [Lactobacillus antri DSM 16041]
gi|259169631|gb|EEW54126.1| cold-shock domain family protein [Lactobacillus antri DSM 16041]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFI+ E SGDDVF+H SA+ G +L EGQ VT+D + D
Sbjct: 1 MEQGTVKWFNNDKGYGFISRE----SGDDVFVHFSAIQGEGFKSLDEGQKVTFDVEEGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAVNV 63
>gi|238749794|ref|ZP_04611299.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380]
gi|238712449|gb|EEQ04662.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380]
Length = 85
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|160894675|ref|ZP_02075450.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50]
gi|156863609|gb|EDO57040.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI+ E GDD+F+H SA+ +G L EG V ++ ++ +
Sbjct: 1 MKTGTVKWFNAKKGYGFISDEN----GDDIFVHFSALNMSGFKVLEEGDKVEFEVIEGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|254474468|ref|ZP_05087854.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
R11]
gi|214028711|gb|EEB69546.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
R11]
Length = 68
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q V Y+ Q
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDS---GGSDVFVHISAVERSGLTGLADNQKVNYEL-QPGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NL+LV
Sbjct: 57 DGRESAVNLELV 68
>gi|33594722|ref|NP_882366.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
gi|33564798|emb|CAE44126.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
gi|332384133|gb|AEE68980.1| putative cold shock-like protein [Bordetella pertussis CS]
Length = 68
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++
Sbjct: 1 MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDVP 57
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 58 KG--PQAAEIRPL 68
>gi|222147128|ref|YP_002548085.1| cold shock protein [Agrobacterium vitis S4]
gi|221734118|gb|ACM35081.1| cold shock protein [Agrobacterium vitis S4]
Length = 74
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + YD +++
Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPDN---GGPDAFVHISAVERAGMREIVEGQKIAYDMERDN 61
Query: 61 ANGKYSAENLK 71
+GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72
>gi|16119742|ref|NP_396448.1| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|15162334|gb|AAK90889.1| cold shock protein [Agrobacterium tumefaciens str. C58]
Length = 74
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++
Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPDN---GGVDAFVHISAVERAGMRELVEGQKIGFDLERDM 61
Query: 61 ANGKYSAENLK 71
+GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72
>gi|332637467|ref|ZP_08416330.1| cold shock protein [Weissella cibaria KACC 11862]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GF++ E SGDDVF+H SA+ G +L EGQ V+++ Q D
Sbjct: 1 MEQGTVKWFNADKGFGFLSRE----SGDDVFVHFSAIQGDGFKSLEEGQAVSFEVQQGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANVTKL 66
>gi|86749297|ref|YP_485793.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris HaA2]
gi|91977723|ref|YP_570382.1| cold-shock protein, DNA-binding [Rhodopseudomonas palustris
BisB5]
gi|86572325|gb|ABD06882.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
gi|91684179|gb|ABE40481.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
Length = 69
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ V ++ +
Sbjct: 1 MPTGTVKWFNGQKGFGFIAPND---GGNDVFVHISAVERAGLSGLAEGQKVNFELKTDKM 57
Query: 62 NGKYSAENLKLV 73
GK SAENL+LV
Sbjct: 58 RGKTSAENLELV 69
>gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46]
gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P G+DVF+H S + G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNSEKGFGFIAPAD---GGNDVFVHYSEIQGTGFKTLEENQAVEFEIGEGQK 57
Query: 62 NGKYSAENLKLV 73
A ++K +
Sbjct: 58 G--PQALDVKPL 67
>gi|229544252|ref|ZP_04433311.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
gi|229325391|gb|EEN91067.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI E GDDVF+H SA+ G L EGQ V++D +
Sbjct: 1 MEHGTVKWFNSEKGYGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQKVSFDVEEGSR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|123441828|ref|YP_001005812.1| cold shock-like protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088789|emb|CAL11595.1| cold shock-like protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 85
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|13472286|ref|NP_103853.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|260464020|ref|ZP_05812215.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|319781978|ref|YP_004141454.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|14023031|dbj|BAB49639.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
gi|259030191|gb|EEW31472.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|317167866|gb|ADV11404.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 70
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ + ++ Q+
Sbjct: 1 MATGTVKWFNATKGFGFIQPD---AGGADVFVHISAVERAGLSTLVEGQKINFEIEQDRR 57
Query: 62 NGKYSAENLKL 72
GK SA +L
Sbjct: 58 TGKSSAGSLSK 68
>gi|325983251|ref|YP_004295653.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
sp. AL212]
gi|325532770|gb|ADZ27491.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA++S G +L E Q VT+D
Sbjct: 1 MATGTVKWFNDSKGFGFITPDD---GGEDIFAHFSAISSGGYKSLREAQRVTFDITTGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 GK--QASNI 64
>gi|119961765|ref|YP_946790.1| cold shock protein [Arthrobacter aurescens TC1]
gi|119948624|gb|ABM07535.1| putative cold shock protein [Arthrobacter aurescens TC1]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFIT + S GDDVF+H SA+ G L EGQ V ++ +
Sbjct: 1 MALGTVKWFNAEKGYGFITVDES---GDDVFVHWSAIQMDGFRALEEGQRVEFELGEGQK 57
Query: 62 NGKYSAENLKL 72
AE +++
Sbjct: 58 G--PQAEGVRV 66
>gi|110678559|ref|YP_681566.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
gi|109454675|gb|ABG30880.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
Length = 68
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D ++
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EDGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRQSATNLAL 67
>gi|73663621|ref|YP_302402.1| cold shock protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72496136|dbj|BAE19457.1| cold shock protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G+DVF+H SA+A G +L EGQ V ++ V+ D
Sbjct: 1 MNNGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIAQEGYKSLEEGQAVEFEIVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|269792002|ref|YP_003316906.1| cold-shock DNA-binding domain-containing protein
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099637|gb|ACZ18624.1| cold-shock DNA-binding domain protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFIT + G DVF H SA+ G L EGQ V+ D
Sbjct: 1 MATQGTVKWFNATKGYGFITTD----EGRDVFCHFSAIKMDGYRTLEEGQRVSLDVEMGP 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--EQAANVVKL 67
>gi|291561124|emb|CBL39923.1| cold-shock DNA-binding protein family [butyrate-producing
bacterium SS3/4]
Length = 70
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KGYGFI+ + GDDVF+H SA+ G L EGQ VT+D Q+
Sbjct: 1 MNNGTVKWFNSEKGYGFISNDN---GGDDVFVHFSAIVGDGFKTLEEGQKVTFDTEQDPK 57
Query: 62 N-GKYSAENLKLV 73
N K A N+ +
Sbjct: 58 NSKKLRAVNVVKL 70
>gi|288918768|ref|ZP_06413114.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
gi|288349853|gb|EFC84084.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
Length = 68
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT +G G DVF H S++ G +L EGQ V++ Q
Sbjct: 1 MSEGTVKWFNAEKGFGFITVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFTIEQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQAAQVQPL 67
>gi|320012608|gb|ADW07458.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H SA+ + G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSAINATGFRELQEGQAVTFDVTQGQK 57
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 58 G--PQAENIT 65
>gi|269792592|ref|YP_003317496.1| cold-shock DNA-binding domain-containing protein
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100227|gb|ACZ19214.1| cold-shock DNA-binding domain protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 83
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KGYGFIT E G DVF+H SA+ G L EGQ V+++ V+
Sbjct: 19 TNGVVKWFNATKGYGFITAED----GKDVFVHFSAIQQEGFKTLEEGQRVSFEVVEGSKG 74
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 75 --PQAANVEKL 83
>gi|313671995|ref|YP_004050106.1| cold-shock DNA-binding domain protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938751|gb|ADR17943.1| cold-shock DNA-binding domain protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G++KW+N KGYGFIT + +G+DVF+H SA+ G +L EG V +D V+
Sbjct: 1 MSNTGTVKWFNDTKGYGFIT----SSTGEDVFVHYSAITMDGFKSLKEGDKVNFDIVKGP 56
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 57 KG--PQAANVTK 66
>gi|206895854|ref|YP_002247469.1| hypothetical protein COPRO5265_1161 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738471|gb|ACI17549.1| conserved domain protein [Coprothermobacter proteolyticus DSM
5265]
Length = 89
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ KGYGFIT + DVF+H SA+ G +L +G V ++ V N
Sbjct: 23 MYTGTVKWFDAKKGYGFITRDDGEG---DVFVHFSAIEGNGFKSLDQGDKVEFEIV-NGP 78
Query: 62 NGKYSAENLKL 72
G +A+ +K
Sbjct: 79 KGPQAAKVVKK 89
>gi|147856673|emb|CAN81359.1| hypothetical protein VITISV_040408 [Vitis vinifera]
Length = 219
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP+ GDD+F+H+S++ S G +L EG+ V + V++ +G
Sbjct: 5 TGTVKWFNDQKGFGFITPDD---GGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 61 RTKAVDVT 68
>gi|308177559|ref|YP_003916965.1| cold shock protein [Arthrobacter arilaitensis Re117]
gi|307745022|emb|CBT75994.1| cold shock protein [Arthrobacter arilaitensis Re117]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P DVF H SA+ S G +L EGQ V Y
Sbjct: 1 MATGTVKWFNAEKGFGFIAPSD---GSADVFAHYSAIQSFGFRSLEEGQTVEYTLEAGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 G--PQATNIQ 65
>gi|295688501|ref|YP_003592194.1| cold-shock DNA-binding domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295430404|gb|ADG09576.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
21756]
Length = 175
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V Y+ Q+ +G
Sbjct: 109 TGVVKWFNTTKGFGFIQPDN---GGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSG 165
Query: 64 KYSAENLKLV 73
K SA NL+++
Sbjct: 166 KTSAGNLRIL 175
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+NP KG+GFI PE G DVF+H +AV +GL L EG V Y+ ++
Sbjct: 1 MANGVVKWFNPAKGFGFIQPED---GGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57
Query: 62 NGKYSAENLKL 72
+GK SA L++
Sbjct: 58 SGKTSAGQLRV 68
>gi|227550530|ref|ZP_03980579.1| cold shock protein [Enterococcus faecium TX1330]
gi|257880205|ref|ZP_05659858.1| cold-shock protein [Enterococcus faecium 1,230,933]
gi|257883006|ref|ZP_05662659.1| cold-shock protein [Enterococcus faecium 1,231,502]
gi|257885248|ref|ZP_05664901.1| cold-shock protein [Enterococcus faecium 1,231,501]
gi|257888557|ref|ZP_05668210.1| cold-shock protein [Enterococcus faecium 1,141,733]
gi|257891411|ref|ZP_05671064.1| cold-shock protein [Enterococcus faecium 1,231,410]
gi|257893592|ref|ZP_05673245.1| cold-shock protein [Enterococcus faecium 1,231,408]
gi|257897068|ref|ZP_05676721.1| cold-shock protein [Enterococcus faecium Com12]
gi|257899006|ref|ZP_05678659.1| cold-shock protein [Enterococcus faecium Com15]
gi|258614393|ref|ZP_05712163.1| cold shock protein [Enterococcus faecium DO]
gi|260560497|ref|ZP_05832671.1| cold-shock protein [Enterococcus faecium C68]
gi|261209014|ref|ZP_05923419.1| cold-shock protein [Enterococcus faecium TC 6]
gi|289565174|ref|ZP_06445626.1| cold shock-like protein cspD [Enterococcus faecium D344SRF]
gi|293378756|ref|ZP_06624914.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
gi|293553256|ref|ZP_06673893.1| cold-shock protein [Enterococcus faecium E1039]
gi|293563316|ref|ZP_06677766.1| cold-shock protein [Enterococcus faecium E1162]
gi|293569311|ref|ZP_06680609.1| cold-shock protein [Enterococcus faecium E1071]
gi|293572477|ref|ZP_06683456.1| cold-shock protein [Enterococcus faecium E980]
gi|294615298|ref|ZP_06695174.1| cold-shock protein [Enterococcus faecium E1636]
gi|294619063|ref|ZP_06698558.1| cold shock protein [Enterococcus faecium E1679]
gi|294621461|ref|ZP_06700630.1| cold-shock protein [Enterococcus faecium U0317]
gi|314939797|ref|ZP_07847017.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|314943906|ref|ZP_07850632.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|314950003|ref|ZP_07853296.1| major cold shock protein CspA [Enterococcus faecium TX0082]
gi|314953525|ref|ZP_07856437.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|314994272|ref|ZP_07859574.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|314995140|ref|ZP_07860256.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|227180431|gb|EEI61403.1| cold shock protein [Enterococcus faecium TX1330]
gi|257814433|gb|EEV43191.1| cold-shock protein [Enterococcus faecium 1,230,933]
gi|257818664|gb|EEV45992.1| cold-shock protein [Enterococcus faecium 1,231,502]
gi|257821100|gb|EEV48234.1| cold-shock protein [Enterococcus faecium 1,231,501]
gi|257824611|gb|EEV51543.1| cold-shock protein [Enterococcus faecium 1,141,733]
gi|257827771|gb|EEV54397.1| cold-shock protein [Enterococcus faecium 1,231,410]
gi|257829971|gb|EEV56578.1| cold-shock protein [Enterococcus faecium 1,231,408]
gi|257833633|gb|EEV60054.1| cold-shock protein [Enterococcus faecium Com12]
gi|257836918|gb|EEV61992.1| cold-shock protein [Enterococcus faecium Com15]
gi|260073499|gb|EEW61827.1| cold-shock protein [Enterococcus faecium C68]
gi|260077053|gb|EEW64775.1| cold-shock protein [Enterococcus faecium TC 6]
gi|289162995|gb|EFD10843.1| cold shock-like protein cspD [Enterococcus faecium D344SRF]
gi|291588017|gb|EFF19867.1| cold-shock protein [Enterococcus faecium E1071]
gi|291591856|gb|EFF23489.1| cold-shock protein [Enterococcus faecium E1636]
gi|291594724|gb|EFF26106.1| cold shock protein [Enterococcus faecium E1679]
gi|291598955|gb|EFF30003.1| cold-shock protein [Enterococcus faecium U0317]
gi|291602666|gb|EFF32881.1| cold-shock protein [Enterococcus faecium E1039]
gi|291604768|gb|EFF34252.1| cold-shock protein [Enterococcus faecium E1162]
gi|291607394|gb|EFF36737.1| cold-shock protein [Enterococcus faecium E980]
gi|292642684|gb|EFF60836.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
gi|313590631|gb|EFR69476.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|313591307|gb|EFR70152.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|313594448|gb|EFR73293.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|313597447|gb|EFR76292.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|313640937|gb|EFS05517.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|313643650|gb|EFS08230.1| major cold shock protein CspA [Enterococcus faecium TX0082]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT + GDDVF+H SA+ G +L EGQ V + V+
Sbjct: 1 MEHGTVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEGAR 56
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 57 G--PQAAEVTKL 66
>gi|153813260|ref|ZP_01965928.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174]
gi|149830673|gb|EDM85764.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174]
gi|295108549|emb|CBL22502.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162]
Length = 66
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VTYD +
Sbjct: 1 MNKGTVKWFNAEKGYGFITGED----GADVFVHFSAINGEGFKSLDEGQAVTYDLTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--MQAANVTKL 66
>gi|183598325|ref|ZP_02959818.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC
25827]
gi|188020499|gb|EDU58539.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC
25827]
Length = 83
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+D+F H S + G L GQ V +
Sbjct: 1 METGTVKWFNNAKGFGFICPEN---GGEDIFAHYSCIQMEGYRTLKAGQKVNFSINTGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|84685583|ref|ZP_01013480.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84666249|gb|EAQ12722.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
Length = 68
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P +E G DVF+H SAV +GL L + Q V+Y+ Q
Sbjct: 1 MATGTVKWFNATKGFGFIEP---SEGGKDVFVHISAVERSGLTGLADNQKVSYEL-QAGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NL+L+
Sbjct: 57 DGRESAANLELL 68
>gi|254466858|ref|ZP_05080269.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
gi|206687766|gb|EDZ48248.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
Length = 69
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE G D+F+H SAV +GL L + Q VTY+ +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPED---GGKDIFVHISAVERSGLTGLADNQKVTYEL-RAGR 56
Query: 62 NGKYSAENLKLVP 74
+G+ SA ++ LV
Sbjct: 57 DGRESAVDIALVS 69
>gi|75675791|ref|YP_318212.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|74420661|gb|ABA04860.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIKP---TTGDRDVFVHISAVERAGLSTLDENQTIEYDLVEN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66
>gi|239926846|ref|ZP_04683799.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291435186|ref|ZP_06574576.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672]
gi|291338081|gb|EFE65037.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSNINASGFRELQEGQAVTFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|271965975|ref|YP_003340171.1| cold-shock DNA-binding domain-containing protein
[Streptosporangium roseum DSM 43021]
gi|270509150|gb|ACZ87428.1| putative cold-shock DNA-binding domain protein [Streptosporangium
roseum DSM 43021]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAAQGYRELQEGQKVSFDITQGQK 57
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 58 G--PQAENIVPV 67
>gi|254429153|ref|ZP_05042860.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
gi|196195322|gb|EDX90281.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
Length = 84
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGF+ P+ E G+D+F+H S + G +L GQ V Y+ +
Sbjct: 1 MATGRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYEVQPANK 57
Query: 62 NGKYSAENLKLVPKSSN 78
+ A NL+ ++SN
Sbjct: 58 G--FHAINLRANEEASN 72
>gi|186474439|ref|YP_001863410.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184198398|gb|ACC76360.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + + G +L E Q V++D
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIKTEGFKSLQENQKVSFDVKMGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 58 GK--QAANIKPV 67
>gi|54303445|ref|YP_133438.1| putative cold shock protein [Photobacterium profundum SS9]
gi|46916875|emb|CAG23638.1| putative cold shock protein [Photobacterium profundum SS9]
Length = 104
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 39 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 95
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 96 --LQAANVVAI 104
>gi|227502480|ref|ZP_03932529.1| cold shock protein [Corynebacterium accolens ATCC 49725]
gi|306835053|ref|ZP_07468097.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726]
gi|227076849|gb|EEI14812.1| cold shock protein [Corynebacterium accolens ATCC 49725]
gi|304569064|gb|EFM44585.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726]
Length = 67
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI E G D+F+H S + +G L E Q V+++
Sbjct: 1 MTQGTVKWFNSEKGYGFIERED---GGGDIFVHYSEIQGSGFRTLEENQKVSFEVGSGPK 57
Query: 62 NGKYSAENL 70
+ A ++
Sbjct: 58 GDQAQAVSI 66
>gi|83645150|ref|YP_433585.1| cold shock protein [Hahella chejuensis KCTC 2396]
gi|83633193|gb|ABC29160.1| Cold shock protein [Hahella chejuensis KCTC 2396]
Length = 116
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ +G +KW+N KGYGFI + +D+F+H S++ G L GQ V +D +
Sbjct: 1 MPQGKVKWFNNAKGYGFIIADEGNGDLCKEDLFVHFSSIQMEGYKTLKAGQAVNFDAQPS 60
Query: 60 DANGKYSAENLKLVPKSSN 78
+ A N+ +
Sbjct: 61 GKG--FHAVNIVPLESEPE 77
>gi|296332857|ref|ZP_06875317.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673203|ref|YP_003864875.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23]
gi|296150137|gb|EFG91026.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411447|gb|ADM36566.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI + GDDVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIERDN----GDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|261404186|ref|YP_003240427.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|261280649|gb|ACX62620.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
Y412MC10]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+DVF+H SA+A G +L EGQ V ++ VQ +
Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAIAGDGFKSLDEGQRVEFNVVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--QQAENVVKL 66
>gi|91199641|emb|CAI77996.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|96771688|emb|CAI78270.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|114049906|emb|CAK50923.1| putative cold shock protein [Streptomyces ambofaciens]
gi|114050128|emb|CAK51161.1| putative cold shock protein [Streptomyces ambofaciens]
gi|117164235|emb|CAJ87776.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|126347347|emb|CAJ89054.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+P+ E G DVF+H SA+ +G NL E Q V ++ Q
Sbjct: 1 MAQGTVKWFNGEKGFGFISPD---EGGPDVFVHFSAIQGSGFRNLEENQRVEFEITQGQR 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQADKVRGL 67
>gi|320323777|gb|EFW79861.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. glycinea str. B076]
gi|320327917|gb|EFW83922.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330881200|gb|EGH15349.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330987930|gb|EGH86033.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331010738|gb|EGH90794.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 92
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G DD+F H S + G L GQ V+++ +Q
Sbjct: 1 MLNGKVKWFNNAKGYGFIIEDGKP--DDDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 58
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 59 G--LHAVNIAPL 68
>gi|315644644|ref|ZP_07897776.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|329928423|ref|ZP_08282293.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
gi|315280151|gb|EFU43448.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|328937859|gb|EGG34265.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ VQ +
Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGDGFKSLDEGQRVEFNVVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--QQAENVVKL 66
>gi|296271250|ref|YP_003653882.1| cold-shock DNA-binding domain-containing protein [Thermobispora
bispora DSM 43833]
gi|296094037|gb|ADG89989.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
43833]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ +KGYGFI + G DVF+H +A+ G +L +GQ V +D +
Sbjct: 1 MAQGTVKWFDAEKGYGFIAVD----GGKDVFVHYTAILMDGFKSLEQGQRVEFDITEGRK 56
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 57 G--PQAEAVRTI 66
>gi|297197159|ref|ZP_06914556.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|197716555|gb|EDY60589.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MAKGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELQEGQKVEFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN++
Sbjct: 58 G--PQAENIRP 66
>gi|28199264|ref|NP_779578.1| cold shock protein [Xylella fastidiosa Temecula1]
gi|71276139|ref|ZP_00652419.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
gi|71898360|ref|ZP_00680533.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|71902362|ref|ZP_00684335.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|170730633|ref|YP_001776066.1| cold-shock DNA-binding domain-containing protein [Xylella
fastidiosa M12]
gi|182681990|ref|YP_001830150.1| cold-shock DNA-binding domain-containing protein [Xylella
fastidiosa M23]
gi|28057370|gb|AAO29227.1| cold shock protein [Xylella fastidiosa Temecula1]
gi|71163057|gb|EAO12779.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
gi|71727903|gb|EAO30135.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|71731883|gb|EAO33941.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|167965426|gb|ACA12436.1| putative cold-shock DNA-binding domain protein [Xylella
fastidiosa M12]
gi|182632100|gb|ACB92876.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23]
gi|307578255|gb|ADN62224.1| cold shock protein [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG+GFI P+ +VF+H S + S G +L EGQ VTYD Q
Sbjct: 1 MQSGTVKWFSDQKGFGFILPDD---GTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQASNITPI 67
>gi|288918913|ref|ZP_06413256.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
gi|288349665|gb|EFC83899.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H SA+ G L EGQ V + Q
Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIVMDGYKALEEGQRVEFQVTQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 58 G--PQADAVRVV 67
>gi|238795829|ref|ZP_04639342.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969]
gi|238720292|gb|EEQ12095.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969]
Length = 85
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D +
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|89097123|ref|ZP_01170013.1| cold-shock protein [Bacillus sp. NRRL B-14911]
gi|89087946|gb|EAR67057.1| cold-shock protein [Bacillus sp. NRRL B-14911]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|326202744|ref|ZP_08192612.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325987328|gb|EGD48156.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFIT + G+DVF+H S++ S+G +L EGQ V +D +
Sbjct: 1 MNTGIVKWFNAEKGFGFITVD----GGEDVFVHFSSIQSSGYKSLDEGQRVNFDIEKGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNV 63
>gi|149911304|ref|ZP_01899925.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
gi|149805619|gb|EDM65621.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++KW+N DKG+GFITP+ E G+D+F+H S + ++G L +GQ V ++
Sbjct: 1 MSRGTVKWFNADKGFGFITPD---EGGNDLFVHHSEIQTSGYATLEDGQKVEFEVGSGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PCATNVTAI 67
>gi|145225805|ref|YP_001136483.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315442490|ref|YP_004075369.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
gi|145218291|gb|ABP47695.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
PYR-GCK]
gi|315260793|gb|ADT97534.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ DVF+H S ++ +G +L E Q V ++ Q +
Sbjct: 1 MAQGTVKWFNGEKGFGFIAPDD---GSKDVFVHYSEISGSGYRSLEENQRVEFEVEQGNK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQAVRVNAI 67
>gi|119717093|ref|YP_924058.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
JS614]
gi|119537754|gb|ABL82371.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI +G G DVF+H +A+A G +L + Q V ++ Q
Sbjct: 1 MAQGTVKWFNDDKGFGFIAQDG---GGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPK 57
Query: 62 NGKYSAENLK 71
AEN++
Sbjct: 58 G--PQAENVR 65
>gi|257485426|ref|ZP_05639467.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289625414|ref|ZP_06458368.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289649303|ref|ZP_06480646.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298487538|ref|ZP_07005580.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157922|gb|EFH99000.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330866849|gb|EGH01558.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330889670|gb|EGH22331.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. mori str. 301020]
Length = 94
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G DD+F H S + G L GQ V+++ +Q
Sbjct: 3 MLNGKVKWFNNAKGYGFIIEDGKP--DDDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 60
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 61 G--LHAVNIAPL 70
>gi|238784506|ref|ZP_04628514.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970]
gi|238714569|gb|EEQ06573.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970]
Length = 85
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|77464163|ref|YP_353667.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|126463006|ref|YP_001044120.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|146276547|ref|YP_001166706.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|221640032|ref|YP_002526294.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|332559039|ref|ZP_08413361.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
WS8N]
gi|77388581|gb|ABA79766.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
gi|126104670|gb|ABN77348.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17029]
gi|145554788|gb|ABP69401.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17025]
gi|221160813|gb|ACM01793.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|332276751|gb|EGJ22066.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
WS8N]
Length = 68
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI PEG DVF+H +A+ AG+ L +GQ VT+D ++
Sbjct: 1 MAKGTVKWFNATKGYGFIAPEG---GKKDVFVHITALERAGIRALNDGQAVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ +
Sbjct: 57 DGRESATNISI 67
>gi|253579494|ref|ZP_04856763.1| cold-shock protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848995|gb|EES76956.1| cold-shock protein [Ruminococcus sp. 5_1_39BFAA]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VTYD +
Sbjct: 1 MNKGTVKWFNAEKGYGFITGED----GADVFVHFSAINGEGFKSLEEGQAVTYDLTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--MQAANVTKL 66
>gi|81428382|ref|YP_395382.1| cold shock protein CspA family protein [Lactobacillus sakei
subsp. sakei 23K]
gi|78610024|emb|CAI55072.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
subsp. sakei 23K]
Length = 66
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E DD+F+H SA+ G +L EGQ V +D V+
Sbjct: 1 MEKGTVKWFNNEKGFGFISVE----GQDDIFVHFSAIQDEGFKSLEEGQAVEFDIVEGTR 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--AQAANVKKL 66
>gi|238762119|ref|ZP_04623092.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638]
gi|238699847|gb|EEP92591.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638]
Length = 85
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D +
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
gi|237759447|gb|ACR18697.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + +G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSQDVFVHYTEIQGSGFRTLEENQKVEFEIGEGAK 57
Query: 62 NGKYSAENLKLV 73
A++++ +
Sbjct: 58 G--PQAQHVRAL 67
>gi|224824762|ref|ZP_03697869.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
gi|224603255|gb|EEG09431.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ E G+D+F H SA+ + G +L EGQ V++D V
Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINTQGFKSLKEGQRVSFDVVNGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQP 66
>gi|323499460|ref|ZP_08104431.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326]
gi|323315447|gb|EGA68487.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326]
Length = 73
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57
Query: 62 NGKYSAENLKLVPK 75
Y A + V
Sbjct: 58 G--YHASVVTPVES 69
>gi|170691171|ref|ZP_02882337.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|170144420|gb|EDT12582.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGNGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|118616248|ref|YP_904580.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99]
gi|118568358|gb|ABL03109.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ D+F+H S + +G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNGEKGFGFITPDD---GTKDLFVHYSEIQCSGYRSLEENQRVQFEVEQGTK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQAVGVSAV 67
>gi|92116020|ref|YP_575749.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91798914|gb|ABE61289.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 68
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI P+ G+DVF+H SAV AGL L EGQ ++Y+ V + +GK
Sbjct: 2 GTVKWFNATKGYGFIQPDD---GGNDVFVHVSAVERAGLGTLREGQKISYEIVADRRSGK 58
Query: 65 YSAENLK 71
SA+NL+
Sbjct: 59 SSADNLR 65
>gi|89093186|ref|ZP_01166136.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
MED92]
gi|89082482|gb|EAR61704.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
MED92]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V + Q
Sbjct: 1 MATTGTVKWFNDEKGFGFIEQEN----GPDVFAHFSAIQGDGFKSLAEGQKVEFTITQGQ 56
Query: 61 ANGKYSAENLKLV 73
AEN+ V
Sbjct: 57 KG--PQAENIVKV 67
>gi|167584235|ref|ZP_02376623.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
Length = 67
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+Y+ +
Sbjct: 1 MDTGTVKWFNETKGFGFITPD---KGGDDLFAHFSEIRGTGFKTLAENQKVSYEVKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQASNITPL 67
>gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus equi 103S]
gi|325676272|ref|ZP_08155951.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
gi|311887998|emb|CBH47310.1| cold shock protein [Rhodococcus equi 103S]
gi|325552833|gb|EGD22516.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF+H SA+ + G L E Q V ++ Q +
Sbjct: 1 MAEGTVKWFNAEKGFGFIAPDD---GSADVFVHYSAIQTNGFRTLEENQRVRFEIGQGNK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATDVTAV 67
>gi|220911667|ref|YP_002486976.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|219858545|gb|ACL38887.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFIT +GS GDD+F+H SA+ G L EGQ V + + +
Sbjct: 1 MALGTVKWFNAEKGYGFITVDGS---GDDIFVHWSAIQGEGYRALDEGQRVELEVGEGEK 57
Query: 62 NGKYSAENLKLVP 74
AE+++
Sbjct: 58 G--PQAESVRPAE 68
>gi|256374593|ref|YP_003098253.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
gi|255918896|gb|ACU34407.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI + G DVF+H SA+ G L EG V ++ Q
Sbjct: 1 MAVGTVKWFNSEKGYGFIAAD----GGPDVFVHYSAIMMDGFRTLAEGDRVEFEI-QAGR 55
Query: 62 NGKYSAENLKL 72
+G+ A +++
Sbjct: 56 DGRSQASDVRK 66
>gi|291616885|ref|YP_003519627.1| CspD [Pantoea ananatis LMG 20103]
gi|291151915|gb|ADD76499.1| CspD [Pantoea ananatis LMG 20103]
gi|327393313|dbj|BAK10735.1| cold shock-like protein CspD [Pantoea ananatis AJ13355]
Length = 100
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G G+D+F H S + G L GQ V +D Q
Sbjct: 27 METGTVKWFNNAKGFGFICPIG---GGEDIFAHYSTIQMDGYRTLKAGQQVHFDVHQGPK 83
Query: 62 N 62
Sbjct: 84 G 84
>gi|163735233|ref|ZP_02142668.1| cold shock protein CspA [Roseobacter litoralis Och 149]
gi|161391447|gb|EDQ15781.1| cold shock protein CspA [Roseobacter litoralis Och 149]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D ++
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EDGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRQSATNIAL 67
>gi|157369915|ref|YP_001477904.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|157321679|gb|ABV40776.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
Length = 73
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V++D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 58 GN--HASLIVPVESEA 71
>gi|297194957|ref|ZP_06912355.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297152559|gb|EFH31845.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|307726451|ref|YP_003909664.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586976|gb|ADN60373.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Q
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIKGNGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|55820886|ref|YP_139328.1| cold shock protein B [Streptococcus thermophilus LMG 18311]
gi|55822803|ref|YP_141244.1| cold shock protein B [Streptococcus thermophilus CNRZ1066]
gi|55736871|gb|AAV60513.1| cold shock protein B [Streptococcus thermophilus LMG 18311]
gi|55738788|gb|AAV62429.1| cold shock protein B [Streptococcus thermophilus CNRZ1066]
Length = 88
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFIT E G D+F H S++ S G +L E Q V +D
Sbjct: 22 IMANGTVKWFNATKGFGFITSED----GQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQ 77
Query: 61 ANGKYSAENLKL 72
A N+
Sbjct: 78 RG--PQAVNITK 87
>gi|260575739|ref|ZP_05843736.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
gi|259022137|gb|EEW25436.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL L + Q + ++ Q+
Sbjct: 1 MPTGTVKWFNSTKGYGFIAPDD---GGKDVFVHISAVERAGLKGLNDNQKIGFEL-QSGR 56
Query: 62 NGKYSAENLKLV 73
+GK SA +L+L+
Sbjct: 57 DGKQSAGDLRLL 68
>gi|16801190|ref|NP_471458.1| hypothetical protein lin2124 [Listeria innocua Clip11262]
gi|16804055|ref|NP_465540.1| hypothetical protein lmo2016 [Listeria monocytogenes EGD-e]
gi|46908245|ref|YP_014634.1| cold-shock domain-contain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093186|ref|ZP_00230960.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
H7858]
gi|47096659|ref|ZP_00234246.1| cold-shock domain family protein [Listeria monocytogenes str.
1/2a F6854]
gi|116873452|ref|YP_850233.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|217963837|ref|YP_002349515.1| hypothetical protein LMHCC_0544 [Listeria monocytogenes HCC23]
gi|224498533|ref|ZP_03666882.1| hypothetical protein LmonF1_02104 [Listeria monocytogenes Finland
1988]
gi|224501183|ref|ZP_03669490.1| hypothetical protein LmonFR_01460 [Listeria monocytogenes FSL
R2-561]
gi|226224613|ref|YP_002758720.1| major cold-shock protein [Listeria monocytogenes Clip81459]
gi|254825493|ref|ZP_05230494.1| cold-shock domain family protein [Listeria monocytogenes FSL
J1-194]
gi|254827097|ref|ZP_05231784.1| cspB [Listeria monocytogenes FSL N3-165]
gi|254831742|ref|ZP_05236397.1| major cold-shock protein [Listeria monocytogenes 10403S]
gi|254854374|ref|ZP_05243722.1| cold-shock domain family protein [Listeria monocytogenes FSL
R2-503]
gi|254899286|ref|ZP_05259210.1| major cold-shock protein [Listeria monocytogenes J0161]
gi|254912575|ref|ZP_05262587.1| cspB [Listeria monocytogenes J2818]
gi|254931816|ref|ZP_05265175.1| cold-shock domain family protein [Listeria monocytogenes HPB2262]
gi|254936901|ref|ZP_05268598.1| cold-shock domain family protein [Listeria monocytogenes F6900]
gi|255022834|ref|ZP_05294820.1| major cold-shock protein [Listeria monocytogenes FSL J1-208]
gi|255029500|ref|ZP_05301451.1| major cold-shock protein [Listeria monocytogenes LO28]
gi|255521591|ref|ZP_05388828.1| major cold-shock protein [Listeria monocytogenes FSL J1-175]
gi|284802462|ref|YP_003414327.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578]
gi|284995604|ref|YP_003417372.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923]
gi|290892166|ref|ZP_06555162.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
J2-071]
gi|300763679|ref|ZP_07073676.1| cold-shock domain family protein [Listeria monocytogenes FSL
N1-017]
gi|61221528|sp|P0A357|CSPB_LISMO RecName: Full=Cold shock-like protein CspLB; Short=CspB
gi|61221529|sp|P0A358|CSPB_LISIN RecName: Full=Cold shock-like protein CspLB; Short=CspB
gi|12054789|emb|CAC20631.1| cold shock protein (CspLB) [Listeria monocytogenes]
gi|16411469|emb|CAD00094.1| cspB [Listeria monocytogenes EGD-e]
gi|16414638|emb|CAC97354.1| cspB [Listeria innocua Clip11262]
gi|46881516|gb|AAT04811.1| cold-shock domain family protein [Listeria monocytogenes serotype
4b str. F2365]
gi|47014981|gb|EAL05927.1| cold-shock domain family protein [Listeria monocytogenes str.
1/2a F6854]
gi|47018437|gb|EAL09196.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
H7858]
gi|116742330|emb|CAK21454.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|217333107|gb|ACK38901.1| conserved domain protein [Listeria monocytogenes HCC23]
gi|225877075|emb|CAS05786.1| Putative major cold-shock protein [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258599480|gb|EEW12805.1| cspB [Listeria monocytogenes FSL N3-165]
gi|258607773|gb|EEW20381.1| cold-shock domain family protein [Listeria monocytogenes FSL
R2-503]
gi|258609499|gb|EEW22107.1| cold-shock domain family protein [Listeria monocytogenes F6900]
gi|284058024|gb|ADB68965.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578]
gi|284061071|gb|ADB72010.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923]
gi|290558289|gb|EFD91807.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
J2-071]
gi|293583370|gb|EFF95402.1| cold-shock domain family protein [Listeria monocytogenes HPB2262]
gi|293590564|gb|EFF98898.1| cspB [Listeria monocytogenes J2818]
gi|293594735|gb|EFG02496.1| cold-shock domain family protein [Listeria monocytogenes FSL
J1-194]
gi|300515415|gb|EFK42465.1| cold-shock domain family protein [Listeria monocytogenes FSL
N1-017]
gi|307571592|emb|CAR84771.1| cold-shock domain family protein [Listeria monocytogenes L99]
gi|313607794|gb|EFR83992.1| putative cold-shock protein [Listeria monocytogenes FSL F2-208]
gi|313618008|gb|EFR90155.1| putative cold-shock protein [Listeria innocua FSL S4-378]
gi|313623004|gb|EFR93297.1| putative cold-shock protein [Listeria innocua FSL J1-023]
gi|328466357|gb|EGF37514.1| hypothetical protein LM1816_12332 [Listeria monocytogenes 1816]
gi|332312449|gb|EGJ25544.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott
A]
Length = 66
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQR 56
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 57 G--PQAEKVTKL 66
>gi|329849353|ref|ZP_08264199.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
gi|328841264|gb|EGF90834.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI P TE G DVF+H SAV AGL +L EGQ + Y Q+
Sbjct: 1 MATGTVKWFNPTKGFGFIEP---TEGGGDVFVHISAVERAGLRSLNEGQKIEYQVAQD-- 55
Query: 62 NGKYSAENLKLV 73
GK SA +LK +
Sbjct: 56 RGKASAVDLKTL 67
>gi|322381500|ref|ZP_08055480.1| cold-shock protein molecular chaperone RNA-helicase
co-factor-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|322382685|ref|ZP_08056543.1| cold-shock protein molecular chaperone-like
protein/RNA-helicase-like protein co-factor
[Paenibacillus larvae subsp. larvae B-3650]
gi|321153346|gb|EFX45776.1| cold-shock protein molecular chaperone-like
protein/RNA-helicase-like protein co-factor
[Paenibacillus larvae subsp. larvae B-3650]
gi|321154542|gb|EFX46838.1| cold-shock protein molecular chaperone RNA-helicase
co-factor-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+DVF+H S++ G +L EGQ V ++ Q +
Sbjct: 1 MQTGTVKWFNAEKGFGFIEIE----QGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ V
Sbjct: 57 G--PQAENVSKV 66
>gi|299821691|ref|ZP_07053579.1| cold shock protein CspA [Listeria grayi DSM 20601]
gi|299817356|gb|EFI84592.1| cold shock protein CspA [Listeria grayi DSM 20601]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E G+D+F H +A+ G L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIETEN----GEDIFAHFTAIQGDGYKTLEEGQSVSFEVVEGNR 56
Query: 62 NGKYSAENLKLVP 74
A N++ +
Sbjct: 57 G--PQAANIEKLS 67
>gi|149203521|ref|ZP_01880491.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
gi|149143354|gb|EDM31393.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L + Q VT+D ++
Sbjct: 1 MANGTVKWFNSTKGFGFIAPDN---GGKDVFVHISAVERAGLTGLADNQKVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL+L
Sbjct: 57 DGRESASNLQL 67
>gi|118589767|ref|ZP_01547172.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata
IAM 12614]
gi|118437853|gb|EAV44489.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata
IAM 12614]
Length = 69
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI PE DVF+H SAV AG+ +L EGQ V+++ VQ+
Sbjct: 1 MPVGTVKFFNTTKGFGFIQPED---GASDVFVHISAVERAGMRSLVEGQKVSFEVVQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK +A+NL+ V
Sbjct: 58 SGKSAADNLQEV 69
>gi|326523669|dbj|BAJ93005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+PE +D+F+H+SA+ S G +L E +V +D + D +G
Sbjct: 6 KGTVKWFNVTKGFGFISPED---GSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGD-DG 61
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 62 RTKASDVT 69
>gi|251810833|ref|ZP_04825306.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060]
gi|293366631|ref|ZP_06613308.1| cold shock protein CspA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805668|gb|EES58325.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060]
gi|291319400|gb|EFE59769.1| cold shock protein CspA [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 77
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 67 RG--PQAANVVKL 77
>gi|186473959|ref|YP_001861301.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184196291|gb|ACC74255.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + + G +L E Q V+++
Sbjct: 1 MATGTVKWFNDAKGFGFITPDD---GGEDLFAHFSEIRTEGFKSLQENQKVSFEVKMGPK 57
Query: 62 NGKYSAENLKL 72
A N+K
Sbjct: 58 GK--QAANIKP 66
>gi|15838943|ref|NP_299631.1| cold shock protein [Xylella fastidiosa 9a5c]
gi|9107526|gb|AAF85151.1|AE004045_9 cold shock protein [Xylella fastidiosa 9a5c]
Length = 67
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG+GFI+P+ +VF H S + S G +L EGQ VTYD Q
Sbjct: 1 MQSGTVKWFSDQKGFGFISPDD---GTPEVFAHYSGINSKGFRSLHEGQRVTYDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQASNITPI 67
>gi|46199928|ref|YP_005595.1| cold shock protein [Thermus thermophilus HB27]
gi|55980328|ref|YP_143625.1| cold shock protein [Thermus thermophilus HB8]
gi|46197555|gb|AAS81968.1| cold shock protein [Thermus thermophilus HB27]
gi|55771741|dbj|BAD70182.1| cold shock protein [Thermus thermophilus HB8]
Length = 68
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +KW+N +KGYGFI E G DVF+H SA+ + G L+EG+ V ++
Sbjct: 1 MNKGIVKWFNAEKGYGFIQQE----EGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRN 56
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 57 GKGPQARRVRRL 68
>gi|15924392|ref|NP_371926.1| major cold shock protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926982|ref|NP_374515.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus N315]
gi|21283019|ref|NP_646107.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus MW2]
gi|49483592|ref|YP_040816.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
gi|49486243|ref|YP_043464.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651902|ref|YP_186289.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus COL]
gi|82750994|ref|YP_416735.1| cold shock protein [Staphylococcus aureus RF122]
gi|87161577|ref|YP_493992.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195129|ref|YP_499930.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|148267890|ref|YP_001246833.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
aureus subsp. aureus JH9]
gi|150393953|ref|YP_001316628.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|151221525|ref|YP_001332347.1| major cold-shock protein CspA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979721|ref|YP_001441980.1| major cold shock protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509568|ref|YP_001575227.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140629|ref|ZP_03565122.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253315273|ref|ZP_04838486.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732039|ref|ZP_04866204.1| major cold shock protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733351|ref|ZP_04867516.1| major cold shock protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006191|ref|ZP_05144792.2| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425466|ref|ZP_05601891.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428126|ref|ZP_05604524.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430757|ref|ZP_05607139.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
68-397]
gi|257433517|ref|ZP_05609875.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
E1410]
gi|257436358|ref|ZP_05612405.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus M876]
gi|257795543|ref|ZP_05644522.1| major cold shock protein CspA [Staphylococcus aureus A9781]
gi|258413351|ref|ZP_05681627.1| major cold shock protein CspA [Staphylococcus aureus A9763]
gi|258420542|ref|ZP_05683484.1| major cold shock protein CspA [Staphylococcus aureus A9719]
gi|258423666|ref|ZP_05686554.1| CSD family cold shock protein [Staphylococcus aureus A9635]
gi|258434686|ref|ZP_05688760.1| major cold-shock protein CspA [Staphylococcus aureus A9299]
gi|258444738|ref|ZP_05693067.1| major cold shock protein [Staphylococcus aureus A8115]
gi|258447427|ref|ZP_05695571.1| major cold shock protein CspA [Staphylococcus aureus A6300]
gi|258449268|ref|ZP_05697371.1| major cold shock protein CspA [Staphylococcus aureus A6224]
gi|258452191|ref|ZP_05700206.1| cold shock protein cspA [Staphylococcus aureus A5948]
gi|258454648|ref|ZP_05702612.1| major cold shock protein CspA [Staphylococcus aureus A5937]
gi|262050357|ref|ZP_06023200.1| major cold shock protein CspA [Staphylococcus aureus D30]
gi|269203025|ref|YP_003282294.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus ED98]
gi|282892895|ref|ZP_06301130.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A8117]
gi|282903982|ref|ZP_06311870.1| conserved domain protein [Staphylococcus aureus subsp. aureus
C160]
gi|282905747|ref|ZP_06313602.1| cold shock protein beta-ribbon CspA family protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282908718|ref|ZP_06316536.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910982|ref|ZP_06318784.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914190|ref|ZP_06321977.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282916668|ref|ZP_06324426.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus
D139]
gi|282919112|ref|ZP_06326847.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
C427]
gi|282924295|ref|ZP_06331969.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus C101]
gi|282927926|ref|ZP_06335535.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A10102]
gi|282929069|ref|ZP_06336651.1| cold shock protein cspA [Staphylococcus aureus A9765]
gi|283770473|ref|ZP_06343365.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
aureus subsp. aureus H19]
gi|283958164|ref|ZP_06375615.1| conserved domain protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284024402|ref|ZP_06378800.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus 132]
gi|293501217|ref|ZP_06667068.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus 58-424]
gi|293510178|ref|ZP_06668886.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus M809]
gi|293526770|ref|ZP_06671455.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|294850737|ref|ZP_06791456.1| cold shock protein [Staphylococcus aureus A9754]
gi|295406349|ref|ZP_06816156.1| cold shock protein [Staphylococcus aureus A8819]
gi|295427915|ref|ZP_06820547.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296275262|ref|ZP_06857769.1| stationary phase/starvation inducible regulatory protein CspD
[Staphylococcus aureus subsp. aureus MR1]
gi|297207943|ref|ZP_06924375.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297244578|ref|ZP_06928461.1| cold shock protein CspB [Staphylococcus aureus A8796]
gi|297591124|ref|ZP_06949762.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
gi|300912027|ref|ZP_07129470.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
TCH70]
gi|304381021|ref|ZP_07363676.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|81827857|sp|Q6G9F9|CSPA_STAAS RecName: Full=Cold shock protein CspA
gi|81828019|sp|Q6GH06|CSPA_STAAR RecName: Full=Cold shock protein CspA
gi|81832398|sp|Q7A0X3|CSPA_STAAW RecName: Full=Cold shock protein CspA
gi|81832432|sp|Q7A2R8|CSPA_STAAM RecName: Full=Cold shock protein CspA
gi|81832507|sp|Q7A5P3|CSPA_STAAN RecName: Full=Cold shock protein CspA
gi|81859588|sp|Q5HG18|CSPA_STAAC RecName: Full=Cold shock protein CspA
gi|118572254|sp|Q2FH36|CSPA_STAA3 RecName: Full=Cold shock protein CspA
gi|118572255|sp|Q2FYN2|CSPA_STAA8 RecName: Full=Cold shock protein CspA
gi|118572256|sp|Q2YY16|CSPA_STAAB RecName: Full=Cold shock protein CspA
gi|8101860|gb|AAF72664.1|AF259960_1 major cold shock protein CspA [Staphylococcus aureus]
gi|13701199|dbj|BAB42494.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus N315]
gi|14247173|dbj|BAB57564.1| major cold shock protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204458|dbj|BAB95155.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus MW2]
gi|49241721|emb|CAG40411.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
gi|49244686|emb|CAG43119.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
gi|57286088|gb|AAW38182.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
aureus COL]
gi|82656525|emb|CAI80947.1| cold shock protein [Staphylococcus aureus RF122]
gi|87127551|gb|ABD22065.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202687|gb|ABD30497.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740959|gb|ABQ49257.1| cold-shock DNA-binding protein family [Staphylococcus aureus
subsp. aureus JH9]
gi|149946405|gb|ABR52341.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|150374325|dbj|BAF67585.1| major cold-shock protein CspA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721856|dbj|BAF78273.1| major cold shock protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368377|gb|ABX29348.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724230|gb|EES92959.1| major cold shock protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728703|gb|EES97432.1| major cold shock protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271923|gb|EEV04061.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274967|gb|EEV06454.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278885|gb|EEV09504.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
68-397]
gi|257281610|gb|EEV11747.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
E1410]
gi|257284640|gb|EEV14760.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus M876]
gi|257789515|gb|EEV27855.1| major cold shock protein CspA [Staphylococcus aureus A9781]
gi|257839915|gb|EEV64383.1| major cold shock protein CspA [Staphylococcus aureus A9763]
gi|257843490|gb|EEV67897.1| major cold shock protein CspA [Staphylococcus aureus A9719]
gi|257846164|gb|EEV70190.1| CSD family cold shock protein [Staphylococcus aureus A9635]
gi|257849047|gb|EEV73029.1| major cold-shock protein CspA [Staphylococcus aureus A9299]
gi|257850231|gb|EEV74184.1| major cold shock protein [Staphylococcus aureus A8115]
gi|257853618|gb|EEV76577.1| major cold shock protein CspA [Staphylococcus aureus A6300]
gi|257857256|gb|EEV80154.1| major cold shock protein CspA [Staphylococcus aureus A6224]
gi|257860128|gb|EEV82961.1| cold shock protein cspA [Staphylococcus aureus A5948]
gi|257863031|gb|EEV85795.1| major cold shock protein CspA [Staphylococcus aureus A5937]
gi|259161556|gb|EEW46155.1| major cold shock protein CspA [Staphylococcus aureus D30]
gi|262075315|gb|ACY11288.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269940897|emb|CBI49280.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20]
gi|282313682|gb|EFB44075.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus C101]
gi|282316922|gb|EFB47296.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
C427]
gi|282319155|gb|EFB49507.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus
D139]
gi|282322258|gb|EFB52582.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282324677|gb|EFB54987.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282326982|gb|EFB57277.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331039|gb|EFB60553.1| cold shock protein beta-ribbon CspA family protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282590223|gb|EFB95303.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A10102]
gi|282591856|gb|EFB96900.1| cold shock protein cspA [Staphylococcus aureus A9765]
gi|282595600|gb|EFC00564.1| conserved domain protein [Staphylococcus aureus subsp. aureus
C160]
gi|282764892|gb|EFC05017.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A8117]
gi|283460620|gb|EFC07710.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
aureus subsp. aureus H19]
gi|283470617|emb|CAQ49828.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
aureus ST398]
gi|283790313|gb|EFC29130.1| conserved domain protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285817080|gb|ADC37567.1| Cold shock protein CspA [Staphylococcus aureus 04-02981]
gi|290920842|gb|EFD97905.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|291096222|gb|EFE26483.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus 58-424]
gi|291467122|gb|EFF09640.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus M809]
gi|294822413|gb|EFG38863.1| cold shock protein [Staphylococcus aureus A9754]
gi|294968937|gb|EFG44959.1| cold shock protein [Staphylococcus aureus A8819]
gi|295128273|gb|EFG57907.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887411|gb|EFH26312.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297178608|gb|EFH37854.1| cold shock protein CspB [Staphylococcus aureus A8796]
gi|297576010|gb|EFH94726.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
gi|298694697|gb|ADI97919.1| cold shock protein [Staphylococcus aureus subsp. aureus ED133]
gi|300886273|gb|EFK81475.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
TCH70]
gi|302333015|gb|ADL23208.1| putative cold-shock DNA-binding domain protein [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302751231|gb|ADL65408.1| putative cold-shock DNA-binding domain protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304340437|gb|EFM06376.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438198|gb|ADQ77269.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
TCH60]
gi|312829797|emb|CBX34639.1| cold shock protein cspD [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131210|gb|EFT87194.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
CGS03]
gi|315195294|gb|EFU25681.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
CGS00]
gi|315195914|gb|EFU26279.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140790|gb|EFW32639.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320142182|gb|EFW34000.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323438687|gb|EGA96429.1| cold shock protein [Staphylococcus aureus O11]
gi|323444056|gb|EGB01667.1| cold shock protein [Staphylococcus aureus O46]
gi|329314078|gb|AEB88491.1| Cold shock protein cspA [Staphylococcus aureus subsp. aureus
T0131]
gi|329725310|gb|EGG61794.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 21189]
gi|329733434|gb|EGG69766.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 21193]
Length = 66
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQDGYKSLEEGQAVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|319440471|ref|ZP_07989627.1| hypothetical protein CvarD4_01780 [Corynebacterium variabile DSM
44702]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI P G DVF+H S + G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGYGFIAPND---GGADVFVHYSEIQGNGFRTLEENQQVEFEIGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ + +
Sbjct: 58 G--PQAQQVTAL 67
>gi|238753480|ref|ZP_04614843.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473]
gi|238708433|gb|EEQ00788.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473]
Length = 73
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+D+F H S + G L GQ V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEN---GGEDIFAHYSTIQMDGYRTLKAGQQVNFDIHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|224826638|ref|ZP_03699739.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
gi|224601239|gb|EEG07421.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ G+D+F H S + + G +L EGQ V+Y +
Sbjct: 1 METGTVKWFNDAKGFGFISPD---AGGEDLFAHFSEIRADGFKSLQEGQKVSYQSGKGQK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--PQATNIQPL 67
>gi|120402055|ref|YP_951884.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119954873|gb|ABM11878.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
PYR-1]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI P+G DVF+H S ++ G +L E Q V ++ Q +
Sbjct: 1 MAQGTVKWFNGDKGFGFIAPDG---GAPDVFVHYSEISGNGYRSLEENQRVEFEVEQGNK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQAVRVTAV 67
>gi|15672150|ref|NP_266324.1| cold shock protein E [Lactococcus lactis subsp. lactis Il1403]
gi|281490655|ref|YP_003352635.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|12723019|gb|AAK04266.1|AE006254_7 cold shock protein E [Lactococcus lactis subsp. lactis Il1403]
gi|281374424|gb|ADA63945.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|326405743|gb|ADZ62814.1| cold shock protein [Lactococcus lactis subsp. lactis CV56]
Length = 65
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFIT E G+DVF H SA+ + G L EGQ VT+D
Sbjct: 1 MAQGTVKWFNATKGFGFITTE----EGNDVFAHFSAIQTDGFKTLDEGQKVTFDVEDGPR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAVNIQK 65
>gi|330467479|ref|YP_004405222.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328810450|gb|AEB44622.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI+ + G DVF H SA++++G +L E Q V ++ Q
Sbjct: 1 MATGTVKWFNGDKGFGFISQDD---GGADVFAHFSAISASGFRSLDENQRVQFEITQGPK 57
Query: 62 NGKYSAENLK 71
A +++
Sbjct: 58 G--PQASDIR 65
>gi|293376790|ref|ZP_06623011.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
PC909]
gi|325838186|ref|ZP_08166522.1| cold shock protein CspB [Turicibacter sp. HGF1]
gi|292644572|gb|EFF62661.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
PC909]
gi|325490857|gb|EGC93158.1| cold shock protein CspB [Turicibacter sp. HGF1]
Length = 66
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKGYGFIT + GD+VF H S + S G L EGQ V ++ Q +
Sbjct: 1 MATGTVKWFNADKGYGFITVDN----GDEVFAHFSEIQSDGFKTLEEGQKVEFEITQGNR 56
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 57 G--PQASHIVKL 66
>gi|227329249|ref|ZP_03833273.1| cold shock-like protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 73
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
++ +S
Sbjct: 58 GNHACLIVPQIAEAAS 73
>gi|83944376|ref|ZP_00956831.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|83953418|ref|ZP_00962140.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83842386|gb|EAP81554.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83844920|gb|EAP82802.1| cold shock family protein [Sulfitobacter sp. EE-36]
Length = 68
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G G D+F+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESAANIAL 67
>gi|254820163|ref|ZP_05225164.1| hypothetical protein MintA_09561 [Mycobacterium intracellulare
ATCC 13950]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI P+G DVF+H S + +G +L E Q V ++ Q
Sbjct: 1 MTQGTVKWFNSDKGFGFIAPDGGE---KDVFVHHSEIQESGFRSLEENQRVQFEITQGPK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQAVGVTAL 67
>gi|91785349|ref|YP_560555.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|187925500|ref|YP_001897142.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|209516559|ref|ZP_03265413.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|296159494|ref|ZP_06842318.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|307731142|ref|YP_003908366.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323527488|ref|YP_004229641.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|91689303|gb|ABE32503.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|187716694|gb|ACD17918.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|209503000|gb|EEA03002.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|295890202|gb|EFG69996.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|307585677|gb|ADN59075.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323384490|gb|ADX56581.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G+D+F H S + + G L E Q VT++
Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRTEGFKTLQENQKVTFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 58 GK--QAANIKPV 67
>gi|302187164|ref|ZP_07263837.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. syringae
642]
Length = 139
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 72 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 126
Query: 64 KYSAENL 70
AE++
Sbjct: 127 -LQAEDV 132
>gi|290959486|ref|YP_003490668.1| cold shock protein B [Streptomyces scabiei 87.22]
gi|260649012|emb|CBG72126.1| putative cold shock protein B [Streptomyces scabiei 87.22]
Length = 127
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVDTLKPGQKVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVTILEPAPS 70
>gi|84502886|ref|ZP_01000999.1| cold shock family protein [Oceanicola batsensis HTCC2597]
gi|84388869|gb|EAQ01739.1| cold shock family protein [Oceanicola batsensis HTCC2597]
Length = 68
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG DVF+H SAV +GL L +G V++D ++
Sbjct: 1 MATGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTGLQDGAKVSFDL-ESGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NL L+
Sbjct: 57 DGRESASNLALL 68
>gi|225574379|ref|ZP_03782989.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM
10507]
gi|225038381|gb|EEG48627.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM
10507]
Length = 66
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD +
Sbjct: 1 MNKGTVKWFNAEKGYGFITGED----GADVFVHFSAINGEGFKSLEEGQSVSYDLTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--MQAANVTKL 66
>gi|17547185|ref|NP_520587.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|17429487|emb|CAD16173.1| probable cold shock-like cspd transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V +D Q
Sbjct: 1 MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|315639698|ref|ZP_07894837.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
gi|315484475|gb|EFU74932.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
Length = 66
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFIT E G+DVF+H SA+ G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNSEKGFGFITAED----GNDVFVHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQATNVEK 65
>gi|21219062|ref|NP_624841.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|256789924|ref|ZP_05528355.1| cold shock protein [Streptomyces lividans TK24]
gi|289773805|ref|ZP_06533183.1| cold shock protein scoF [Streptomyces lividans TK24]
gi|1345847|sp|P48859|CSPF_STRCO RecName: Full=Cold shock protein ScoF
gi|1067201|emb|CAA63367.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|6137029|emb|CAB59584.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|117164740|emb|CAJ88288.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|289704004|gb|EFD71433.1| cold shock protein scoF [Streptomyces lividans TK24]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + + G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|300782274|ref|YP_003762565.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|299791788|gb|ADJ42163.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ G DVF+H S + G +L E V ++ Q
Sbjct: 1 MTQGTVKWFNSEKGFGFITPDN---GGGDVFVHYSEIQGNGFKSLEENARVEFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ ++
Sbjct: 58 G--PQATSVTVI 67
>gi|299065937|emb|CBJ37118.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
CMR15]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V +D Q+
Sbjct: 1 MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQSPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|226939860|ref|YP_002794933.1| CspA [Laribacter hongkongensis HLHK9]
gi|226714786|gb|ACO73924.1| CspA [Laribacter hongkongensis HLHK9]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+P+ E G+D+F H SA+ S G L EGQ V++D
Sbjct: 1 MATGIVKWFNESKGFGFISPD---EGGEDLFAHFSAIQSKGFKTLAEGQRVSFDVTTGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQP 66
>gi|312795894|ref|YP_004028816.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312167669|emb|CBW74672.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G+D+F H S + G +L E Q VTY+
Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRMDGFKSLQENQKVTYEVKMGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIR 65
>gi|254464633|ref|ZP_05078044.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
gi|206685541|gb|EDZ46023.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
Length = 68
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL+L
Sbjct: 57 DGRESAVNLQL 67
>gi|116255743|ref|YP_771576.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209546040|ref|YP_002277930.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|241666510|ref|YP_002984594.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115260391|emb|CAK03495.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209538897|gb|ACI58830.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|240861967|gb|ACS59632.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 69
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + Y+ +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDD---GGADAFVHISAVERAGMREIVEGQKIGYELERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|284043353|ref|YP_003393693.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
gi|283947574|gb|ADB50318.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ DKG+GFITP+ G D+F+H S ++ G +L EG V+Y+ Q D
Sbjct: 1 MATGTVKWFSDDKGFGFITPDD---GGRDLFVHYSGISGDGYRSLPEGSKVSYEEEQGDK 57
Query: 62 NGKYSAENLKLV 73
K A N+ +
Sbjct: 58 GPK--AVNVTKI 67
>gi|260574813|ref|ZP_05842815.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
gi|259022818|gb|EEW26112.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
Length = 68
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PEG DVF+H +A+ AG+ +L +GQ VT+D +
Sbjct: 1 MAKGTVKWFNATKGFGFIAPEG---GKKDVFVHITALERAGIRSLADGQAVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESATNLAL 67
>gi|149180594|ref|ZP_01859098.1| cold-shock domain family protein [Bacillus sp. SG-1]
gi|148851747|gb|EDL65893.1| cold-shock domain family protein [Bacillus sp. SG-1]
Length = 66
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MEKGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGEGFKSLDEGQAVTFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVSK 65
>gi|94971382|ref|YP_593430.1| cold-shock DNA-binding protein family protein [Candidatus
Koribacter versatilis Ellin345]
gi|94553432|gb|ABF43356.1| cold-shock DNA-binding protein family [Candidatus Koribacter
versatilis Ellin345]
Length = 66
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGF+T +SG+DVF+H SA+ S G +L EGQ V++ V+
Sbjct: 1 MEQGTVKWFNDAKGYGFLTR----QSGEDVFVHFSAIQSKGFRSLQEGQTVSFSVVKGPK 56
Query: 62 NGKYSAENLKLV 73
AEN+++V
Sbjct: 57 G--LQAENVQIV 66
>gi|311066997|ref|YP_003971920.1| cold-shock protein [Bacillus atrophaeus 1942]
gi|310867514|gb|ADP30989.1| cold-shock protein [Bacillus atrophaeus 1942]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|187929805|ref|YP_001900292.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12J]
gi|241663931|ref|YP_002982291.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12D]
gi|309781480|ref|ZP_07676216.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
gi|187726695|gb|ACD27860.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|240865958|gb|ACS63619.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|308919893|gb|EFP65554.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E G+++F H SA+ AG L E Q V+++ Q
Sbjct: 1 MALGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMAGFKTLKENQRVSFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|107028274|ref|YP_625369.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|116686267|ref|YP_839514.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170734893|ref|YP_001774007.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|105897438|gb|ABF80396.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
AU 1054]
gi|116651982|gb|ABK12621.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
HI2424]
gi|169820931|gb|ACA95512.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
Length = 67
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ + GDD+F H S + + G L E Q V+++ Q
Sbjct: 1 MDTGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|290963038|ref|YP_003494220.1| cold shock protein [Streptomyces scabiei 87.22]
gi|260652564|emb|CBG75697.1| putative cold shock protein [Streptomyces scabiei 87.22]
Length = 94
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V +D Q
Sbjct: 28 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELLEGQKVNFDIAQGQK 84
Query: 62 NGKYSAENLKLV 73
+AEN+ LV
Sbjct: 85 G--PTAENIVLV 94
>gi|154685002|ref|YP_001420163.1| hypothetical protein RBAM_005400 [Bacillus amyloliquefaciens
FZB42]
gi|154350853|gb|ABS72932.1| CspC [Bacillus amyloliquefaciens FZB42]
Length = 67
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|328472753|gb|EGF43604.1| hypothetical protein LM220_15640 [Listeria monocytogenes 220]
Length = 72
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQR 56
Query: 62 NGKYSAENL 70
AE L
Sbjct: 57 G--PQAEKL 63
>gi|326439837|ref|ZP_08214571.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
Length = 67
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|311107157|ref|YP_003980010.1| cold-shock DNA-binding domain-containing protein 2 [Achromobacter
xylosoxidans A8]
gi|310761846|gb|ADP17295.1| cold-shock DNA-binding domain protein 2 [Achromobacter
xylosoxidans A8]
gi|317405217|gb|EFV85556.1| cold shock-like protein [Achromobacter xylosoxidans C54]
Length = 68
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI P+ D+F H S + S G +L E Q VT++
Sbjct: 1 MATGIVKWFNAEKGYGFIMPDD---GSKDLFAHYSEIRSEGYKSLQENQRVTFEVGTGPK 57
Query: 62 NGKYSAENLKL 72
SA+N+K+
Sbjct: 58 G--PSAKNIKV 66
>gi|294500155|ref|YP_003563855.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295705517|ref|YP_003598592.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294350092|gb|ADE70421.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294803176|gb|ADF40242.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGKVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQASNVQK 65
>gi|293606144|ref|ZP_06688509.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292815599|gb|EFF74715.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 68
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI P+ D+F H S + S G +L E Q VT++
Sbjct: 1 MATGIVKWFNAEKGYGFIMPDD---GSKDLFAHYSEIRSEGYKSLQENQRVTFEVGTGPK 57
Query: 62 NGKYSAENLKL 72
SA+N+K+
Sbjct: 58 G--PSAKNIKV 66
>gi|222153840|ref|YP_002563017.1| cold shock protein [Streptococcus uberis 0140J]
gi|222114653|emb|CAR43704.1| cold shock protein [Streptococcus uberis 0140J]
Length = 67
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G + F H SA+ + G L EGQ VT+D V
Sbjct: 1 MAQGTVKWFNAEKGFGFISTE----EGQEYFAHFSAIQTKGYKTLDEGQQVTFDIVDGHR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +P
Sbjct: 57 G--LQAVNITKLP 67
>gi|110634483|ref|YP_674691.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
BNC1]
gi|110285467|gb|ABG63526.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 70
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFITP+ DVF+H SAV ++G+ +L +GQ V++D +
Sbjct: 1 MAQTGTVKFFNATKGFGFITPDN---GQKDVFVHISAVEASGMRSLVDGQKVSFDVEPDR 57
Query: 61 ANGKYSAENLK 71
A NL
Sbjct: 58 MGKGPKAVNLS 68
>gi|310823251|ref|YP_003955609.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1]
gi|309396323|gb|ADO73782.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1]
Length = 67
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G+DVF H SA+ G L EGQ V ++ +
Sbjct: 1 MAIGTVKWFNDAKGFGFIAQEN----GEDVFCHHSAINMDGFRTLAEGQKVEFEVTRGPK 56
Query: 62 NGKYSAENLKLV 73
+ A+N++ V
Sbjct: 57 G--FQAQNVRAV 66
>gi|309779238|ref|ZP_07674001.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
gi|308922042|gb|EFP67676.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
Length = 67
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G D+F H S + +G L +GQ VT++ Q
Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVTFEVKQGPK 57
Query: 62 NGKYSAE 68
+ SA
Sbjct: 58 GLQASAI 64
>gi|30022927|ref|NP_834558.1| cold shock protein [Bacillus cereus ATCC 14579]
gi|30264924|ref|NP_847301.1| cold shock protein CspD [Bacillus anthracis str. Ames]
gi|42784065|ref|NP_981312.1| cold shock protein CspD [Bacillus cereus ATCC 10987]
gi|47530419|ref|YP_021768.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor']
gi|47568038|ref|ZP_00238744.1| cold-shock domain family protein-related protein [Bacillus cereus
G9241]
gi|49187745|ref|YP_030998.1| cold shock protein CspD [Bacillus anthracis str. Sterne]
gi|49478797|ref|YP_038904.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52140641|ref|YP_086189.1| cold shock protein [Bacillus cereus E33L]
gi|65322228|ref|ZP_00395187.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
gi|118479979|ref|YP_897130.1| cold-shock DNA-binding protein family protein [Bacillus
thuringiensis str. Al Hakam]
gi|165869712|ref|ZP_02214370.1| cold shock protein CspD [Bacillus anthracis str. A0488]
gi|167633815|ref|ZP_02392138.1| cold shock protein CspD [Bacillus anthracis str. A0442]
gi|167637994|ref|ZP_02396272.1| cold shock protein CspD [Bacillus anthracis str. A0193]
gi|170685769|ref|ZP_02876992.1| cold shock protein CspD [Bacillus anthracis str. A0465]
gi|170705396|ref|ZP_02895860.1| cold shock protein CspD [Bacillus anthracis str. A0389]
gi|177651104|ref|ZP_02933935.1| cold shock protein CspD [Bacillus anthracis str. A0174]
gi|190567127|ref|ZP_03020042.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I]
gi|196032813|ref|ZP_03100226.1| cold shock protein CspD [Bacillus cereus W]
gi|196041478|ref|ZP_03108771.1| cold shock protein CspD [Bacillus cereus NVH0597-99]
gi|196044044|ref|ZP_03111281.1| cold shock protein CspD [Bacillus cereus 03BB108]
gi|206969776|ref|ZP_03230730.1| cold shock protein CspD [Bacillus cereus AH1134]
gi|206977004|ref|ZP_03237905.1| cold shock protein CspD [Bacillus cereus H3081.97]
gi|217962350|ref|YP_002340922.1| cold shock protein CspD [Bacillus cereus AH187]
gi|218234055|ref|YP_002369674.1| cold shock protein CspD [Bacillus cereus B4264]
gi|218906084|ref|YP_002453918.1| cold shock protein CspD [Bacillus cereus AH820]
gi|222098335|ref|YP_002532392.1| cold shock protein [Bacillus cereus Q1]
gi|225866859|ref|YP_002752237.1| cold shock protein CspD [Bacillus cereus 03BB102]
gi|227817655|ref|YP_002817664.1| cold shock protein CspD [Bacillus anthracis str. CDC 684]
gi|228917511|ref|ZP_04081060.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228923616|ref|ZP_04086896.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228929909|ref|ZP_04092924.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228936170|ref|ZP_04098973.1| Cold shock protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948606|ref|ZP_04110885.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228955142|ref|ZP_04117156.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228961133|ref|ZP_04122759.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228988125|ref|ZP_04148224.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229048573|ref|ZP_04194133.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|229072368|ref|ZP_04205572.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|229082122|ref|ZP_04214595.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
gi|229087391|ref|ZP_04219530.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
gi|229093978|ref|ZP_04225069.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
gi|229112327|ref|ZP_04241866.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
gi|229124425|ref|ZP_04253613.1| Cold shock protein cspB [Bacillus cereus 95/8201]
gi|229130142|ref|ZP_04259103.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
gi|229141600|ref|ZP_04270132.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
gi|229147434|ref|ZP_04275783.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|229153070|ref|ZP_04281251.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|229158481|ref|ZP_04286542.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
gi|229181180|ref|ZP_04308512.1| Cold shock protein cspB [Bacillus cereus 172560W]
gi|229187123|ref|ZP_04314271.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
gi|229193146|ref|ZP_04320101.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|229199032|ref|ZP_04325717.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|229601378|ref|YP_002869129.1| cold shock protein CspD [Bacillus anthracis str. A0248]
gi|254687666|ref|ZP_05151522.1| cold shock protein CspD [Bacillus anthracis str. CNEVA-9066]
gi|254725230|ref|ZP_05187013.1| cold shock protein CspD [Bacillus anthracis str. A1055]
gi|254736972|ref|ZP_05194678.1| cold shock protein CspD [Bacillus anthracis str. Western North
America USA6153]
gi|254742006|ref|ZP_05199693.1| cold shock protein CspD [Bacillus anthracis str. Kruger B]
gi|254754395|ref|ZP_05206430.1| cold shock protein CspD [Bacillus anthracis str. Vollum]
gi|254757227|ref|ZP_05209254.1| cold shock protein CspD [Bacillus anthracis str. Australia 94]
gi|296505326|ref|YP_003667026.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|301056373|ref|YP_003794584.1| cold shock protein [Bacillus anthracis CI]
gi|49035522|sp|Q816H3|CSPD_BACCR RecName: Full=Cold shock-like protein CspD
gi|49035525|sp|Q81K90|CSPD_BACAN RecName: Full=Cold shock-like protein CspD
gi|29898486|gb|AAP11759.1| Cold shock protein [Bacillus cereus ATCC 14579]
gi|30259599|gb|AAP28787.1| cold shock protein CspD [Bacillus anthracis str. Ames]
gi|30408066|gb|AAP30080.1| CspD [Bacillus thuringiensis]
gi|42739996|gb|AAS43920.1| cold shock protein CspD [Bacillus cereus ATCC 10987]
gi|47505567|gb|AAT34243.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor']
gi|47555341|gb|EAL13686.1| cold-shock domain family protein-related protein [Bacillus cereus
G9241]
gi|49181672|gb|AAT57048.1| cold shock protein CspD [Bacillus anthracis str. Sterne]
gi|49330353|gb|AAT60999.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51974110|gb|AAU15660.1| cold shock protein [Bacillus cereus E33L]
gi|57020677|gb|AAW32928.1| cold-shock protein D [Bacillus thuringiensis]
gi|118419204|gb|ABK87623.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
str. Al Hakam]
gi|164714541|gb|EDR20060.1| cold shock protein CspD [Bacillus anthracis str. A0488]
gi|167513811|gb|EDR89179.1| cold shock protein CspD [Bacillus anthracis str. A0193]
gi|167530616|gb|EDR93318.1| cold shock protein CspD [Bacillus anthracis str. A0442]
gi|170129521|gb|EDS98384.1| cold shock protein CspD [Bacillus anthracis str. A0389]
gi|170670233|gb|EDT20973.1| cold shock protein CspD [Bacillus anthracis str. A0465]
gi|172082930|gb|EDT67992.1| cold shock protein CspD [Bacillus anthracis str. A0174]
gi|190561631|gb|EDV15601.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I]
gi|195994242|gb|EDX58197.1| cold shock protein CspD [Bacillus cereus W]
gi|196025380|gb|EDX64050.1| cold shock protein CspD [Bacillus cereus 03BB108]
gi|196027726|gb|EDX66340.1| cold shock protein CspD [Bacillus cereus NVH0597-99]
gi|206735464|gb|EDZ52632.1| cold shock protein CspD [Bacillus cereus AH1134]
gi|206744809|gb|EDZ56215.1| cold shock protein CspD [Bacillus cereus H3081.97]
gi|217066836|gb|ACJ81086.1| cold shock protein CspD [Bacillus cereus AH187]
gi|218162012|gb|ACK62004.1| cold shock protein CspD [Bacillus cereus B4264]
gi|218537043|gb|ACK89441.1| cold shock protein CspD [Bacillus cereus AH820]
gi|221242393|gb|ACM15103.1| cold shock protein [Bacillus cereus Q1]
gi|225785799|gb|ACO26016.1| cold shock protein CspD [Bacillus cereus 03BB102]
gi|227007679|gb|ACP17422.1| cold shock protein CspD [Bacillus anthracis str. CDC 684]
gi|228584445|gb|EEK42578.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|228590410|gb|EEK48274.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|228596364|gb|EEK54036.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
gi|228602371|gb|EEK59860.1| Cold shock protein cspB [Bacillus cereus 172560W]
gi|228625000|gb|EEK81766.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
gi|228630490|gb|EEK87138.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|228636116|gb|EEK92597.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|228641880|gb|EEK98179.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
gi|228653357|gb|EEL09234.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
gi|228659077|gb|EEL14729.1| Cold shock protein cspB [Bacillus cereus 95/8201]
gi|228671167|gb|EEL26472.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
gi|228689460|gb|EEL43274.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
gi|228695920|gb|EEL48766.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
gi|228701187|gb|EEL53700.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
gi|228710793|gb|EEL62764.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|228722775|gb|EEL74160.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|228771623|gb|EEM20090.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228798576|gb|EEM45563.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228804553|gb|EEM51158.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228811105|gb|EEM57447.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228823515|gb|EEM69344.1| Cold shock protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228829825|gb|EEM75447.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228836085|gb|EEM81446.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228842183|gb|EEM87282.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229265786|gb|ACQ47423.1| cold shock protein CspD [Bacillus anthracis str. A0248]
gi|296326378|gb|ADH09306.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|300378542|gb|ADK07446.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
gi|324328763|gb|ADY24023.1| cold shock protein CspD [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 66
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MQTGKVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|293396849|ref|ZP_06641123.1| cold shock domain protein CspD [Serratia odorifera DSM 4582]
gi|291420320|gb|EFE93575.1| cold shock domain protein CspD [Serratia odorifera DSM 4582]
Length = 73
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVRFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|328462059|gb|EGF34235.1| putative cold shock protein [Lactobacillus helveticus MTCC 5463]
Length = 66
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT DVF+H SA+ + G +L EGQ V+YD Q
Sbjct: 1 MQTGTVKWFNADKGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGGR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|297160336|gb|ADI10048.1| cold shock protein [Streptomyces bingchenggensis BCW-1]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELHEGQKVSFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|260584219|ref|ZP_05851967.1| conserved hypothetical protein [Granulicatella elegans ATCC
700633]
gi|260158845|gb|EEW93913.1| conserved hypothetical protein [Granulicatella elegans ATCC
700633]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E G DVF+H SA+ S G +L EGQ V ++ +
Sbjct: 1 MEQGKVKWFNAEKGFGFIERED----GSDVFVHFSAIQSEGYKSLDEGQAVEFEVEEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|254467917|ref|ZP_05081323.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium
KB13]
gi|207086727|gb|EDZ64010.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium
KB13]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +D+F H S++ G +L EGQ VT++
Sbjct: 1 MAEGTVKWFNDAKGFGFITPDD---GSEDLFAHFSSITGDGYKSLKEGQRVTFEVTDGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIEK 66
>gi|73539162|ref|YP_299529.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72122499|gb|AAZ64685.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 83
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW+N KG+GFI P+ GDD+F H S + S G +L E Q V+++
Sbjct: 16 IMQTGIVKWFNDAKGFGFIKPD---AGGDDLFAHFSEIRSEGFKSLQENQRVSFEVKNGP 72
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 73 KG--LQAANITPL 83
>gi|315658306|ref|ZP_07911178.1| cold shock protein CspA [Staphylococcus lugdunensis M23590]
gi|315496635|gb|EFU84958.1| cold shock protein CspA [Staphylococcus lugdunensis M23590]
Length = 76
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 11 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQDGYKSLEEGQSVEFEVVEGDR 66
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 67 G--PQAANVVKL 76
>gi|294499464|ref|YP_003563164.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295704814|ref|YP_003597889.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294349401|gb|ADE69730.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294802473|gb|ADF39539.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|325962239|ref|YP_004240145.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468326|gb|ADX72011.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 68
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG+++W+N +KGYGFIT +GS GDDVF+H SA+ G L EGQ V + + +
Sbjct: 1 MARGTVRWFNAEKGYGFITVDGS---GDDVFVHWSAIQGEGYRALDEGQRVELEVGEGEK 57
Query: 62 NGKYSAENLKLV 73
AE+++ V
Sbjct: 58 G--PQAESVRPV 67
>gi|296115724|ref|ZP_06834350.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977701|gb|EFG84453.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 68
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ + DVF+H SAV AGL L EGQ V+Y+ +
Sbjct: 1 MATGTVKWFNAQKGFGFLEADD---GTADVFVHISAVERAGLHGLNEGQKVSYEL-ETGR 56
Query: 62 NGKYSAENLKLV 73
NGK SA NL++V
Sbjct: 57 NGKTSAANLQVV 68
>gi|295839487|ref|ZP_06826420.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|302518459|ref|ZP_07270801.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
gi|318062555|ref|ZP_07981276.1| cold shock protein [Streptomyces sp. SA3_actG]
gi|318078420|ref|ZP_07985752.1| cold shock protein [Streptomyces sp. SA3_actF]
gi|295827504|gb|EFG65433.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|302427354|gb|EFK99169.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
Length = 68
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--LQAENITP 66
>gi|170702637|ref|ZP_02893506.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171319239|ref|ZP_02908355.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172064865|ref|YP_001815577.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|170132457|gb|EDT00916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171095541|gb|EDT40505.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171997107|gb|ACB68024.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+
Sbjct: 1 MDTGTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKSGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|81429174|ref|YP_396175.1| cold shock protein CspA family protein [Lactobacillus sakei
subsp. sakei 23K]
gi|78610817|emb|CAI55868.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
subsp. sakei 23K]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGF+T E G DVF+H SA+ G L EGQ V++D ++D
Sbjct: 1 MENGTVKWFNAEKGYGFVTRED----GSDVFVHFSAIQGEGYKTLEEGQSVSFDIEESDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|89098567|ref|ZP_01171450.1| cold shock protein [Bacillus sp. NRRL B-14911]
gi|89086812|gb|EAR65930.1| cold shock protein [Bacillus sp. NRRL B-14911]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V+++ V+
Sbjct: 1 MKNGKVKWFNAEKGFGFIEAED----GNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|148544717|ref|YP_001272087.1| cold-shock DNA-binding protein family protein [Lactobacillus
reuteri DSM 20016]
gi|184154069|ref|YP_001842410.1| cold shock protein [Lactobacillus reuteri JCM 1112]
gi|194466976|ref|ZP_03072963.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
100-23]
gi|227363842|ref|ZP_03847947.1| cold-shock protein [Lactobacillus reuteri MM2-3]
gi|325683052|ref|ZP_08162568.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A]
gi|148531751|gb|ABQ83750.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM
20016]
gi|183225413|dbj|BAG25930.1| cold shock protein [Lactobacillus reuteri JCM 1112]
gi|194454012|gb|EDX42909.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
100-23]
gi|227071069|gb|EEI09387.1| cold-shock protein [Lactobacillus reuteri MM2-3]
gi|324977402|gb|EGC14353.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT E SGDDVF+H SA+ G +L+EGQ VT+D + +
Sbjct: 1 MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFDVEEGER 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|148273662|ref|YP_001223223.1| putative cold shock protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170783059|ref|YP_001711393.1| putative cold shock protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|147831592|emb|CAN02560.1| putative cold shock protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169157629|emb|CAQ02827.1| putative cold shock protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 72
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ G++KW+N +KG+GFIT + DVF+H SA+ +G L EGQ V ++ Q
Sbjct: 1 MANGTVKWFNGEKGFGFITVDAVEGGPAQQDVFVHYSAIEMSGYKVLEEGQRVAFEIGQG 60
Query: 60 DANGKYSAENLKL 72
AEN+ L
Sbjct: 61 SKG--LQAENVTL 71
>gi|29377389|ref|NP_816543.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
gi|227518209|ref|ZP_03948258.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis TX0104]
gi|227554372|ref|ZP_03984419.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis HH22]
gi|229547598|ref|ZP_04436323.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis TX1322]
gi|229548194|ref|ZP_04436919.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis ATCC 29200]
gi|255970846|ref|ZP_05421432.1| cold-shock protein [Enterococcus faecalis T1]
gi|255974421|ref|ZP_05425007.1| cold-shock domain-containing protein [Enterococcus faecalis T2]
gi|256618291|ref|ZP_05475137.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200]
gi|256761221|ref|ZP_05501801.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3]
gi|256852484|ref|ZP_05557860.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
gi|256958160|ref|ZP_05562331.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5]
gi|256960306|ref|ZP_05564477.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96]
gi|256962742|ref|ZP_05566913.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704]
gi|257077433|ref|ZP_05571794.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1]
gi|257080702|ref|ZP_05575063.1| cold-shock DNA-binding family protein [Enterococcus faecalis
E1Sol]
gi|257083376|ref|ZP_05577737.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
gi|257088066|ref|ZP_05582427.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6]
gi|257091145|ref|ZP_05585506.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188]
gi|257417092|ref|ZP_05594086.1| cold-shock DNA-binding protein [Enterococcus faecalis AR01/DG]
gi|257417806|ref|ZP_05594800.1| cold-shock protein [Enterococcus faecalis T11]
gi|257420576|ref|ZP_05597566.1| cold shock protein [Enterococcus faecalis X98]
gi|293382174|ref|ZP_06628117.1| conserved domain protein [Enterococcus faecalis R712]
gi|293388515|ref|ZP_06633019.1| conserved domain protein [Enterococcus faecalis S613]
gi|294779646|ref|ZP_06745037.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
PC1.1]
gi|300860161|ref|ZP_07106248.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
gi|307268850|ref|ZP_07550217.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|307272662|ref|ZP_07553910.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|307275091|ref|ZP_07556245.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|307278556|ref|ZP_07559628.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
gi|307287380|ref|ZP_07567439.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
gi|307290818|ref|ZP_07570712.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|312900401|ref|ZP_07759711.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
gi|312902908|ref|ZP_07762105.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|312905731|ref|ZP_07764753.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
gi|312909074|ref|ZP_07767934.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
gi|312952213|ref|ZP_07771091.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|29344856|gb|AAO82613.1| cold-shock domain family protein [Enterococcus faecalis V583]
gi|227074365|gb|EEI12328.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis TX0104]
gi|227176491|gb|EEI57463.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis HH22]
gi|229306673|gb|EEN72669.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis ATCC 29200]
gi|229307288|gb|EEN73275.1| CspA family cold shock transcriptional regulator [Enterococcus
faecalis TX1322]
gi|255961864|gb|EET94340.1| cold-shock protein [Enterococcus faecalis T1]
gi|255967293|gb|EET97915.1| cold-shock domain-containing protein [Enterococcus faecalis T2]
gi|256597818|gb|EEU16994.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200]
gi|256682472|gb|EEU22167.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3]
gi|256712338|gb|EEU27370.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
gi|256948656|gb|EEU65288.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5]
gi|256950802|gb|EEU67434.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96]
gi|256953238|gb|EEU69870.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704]
gi|256985463|gb|EEU72765.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1]
gi|256988732|gb|EEU76034.1| cold-shock DNA-binding family protein [Enterococcus faecalis
E1Sol]
gi|256991406|gb|EEU78708.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
gi|256996096|gb|EEU83398.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6]
gi|256999957|gb|EEU86477.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188]
gi|257158920|gb|EEU88880.1| cold-shock DNA-binding protein [Enterococcus faecalis ARO1/DG]
gi|257159634|gb|EEU89594.1| cold-shock protein [Enterococcus faecalis T11]
gi|257162400|gb|EEU92360.1| cold shock protein [Enterococcus faecalis X98]
gi|291080457|gb|EFE17821.1| conserved domain protein [Enterococcus faecalis R712]
gi|291082119|gb|EFE19082.1| conserved domain protein [Enterococcus faecalis S613]
gi|294453303|gb|EFG21714.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
PC1.1]
gi|295114296|emb|CBL32933.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
gi|300849200|gb|EFK76950.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
gi|306498127|gb|EFM67650.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|306501553|gb|EFM70849.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
gi|306504793|gb|EFM73991.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
gi|306508209|gb|EFM77325.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|306510657|gb|EFM79679.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|306514854|gb|EFM83402.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|310628210|gb|EFQ11493.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
gi|310629869|gb|EFQ13152.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|310633680|gb|EFQ16963.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|311290636|gb|EFQ69192.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
gi|311292491|gb|EFQ71047.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
gi|315028141|gb|EFT40073.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
gi|315030878|gb|EFT42810.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
gi|315032295|gb|EFT44227.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
gi|315036226|gb|EFT48158.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
gi|315145411|gb|EFT89427.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
gi|315148797|gb|EFT92813.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
gi|315151664|gb|EFT95680.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
gi|315154536|gb|EFT98552.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
gi|315156405|gb|EFU00422.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
gi|315160103|gb|EFU04120.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
gi|315163277|gb|EFU07294.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
gi|315165918|gb|EFU09935.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
gi|315169325|gb|EFU13342.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
gi|315171820|gb|EFU15837.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
gi|315174742|gb|EFU18759.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
gi|315576277|gb|EFU88468.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
gi|315578917|gb|EFU91108.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
gi|315582769|gb|EFU94960.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
gi|323478890|gb|ADX78329.1| cold shock protein cspC [Enterococcus faecalis 62]
gi|327536078|gb|AEA94912.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
gi|329573421|gb|EGG55031.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D +D
Sbjct: 1 MEQGTVKWFNAEKGFGFISRED----GSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAVNVEK 65
>gi|312829285|emb|CBX34127.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus
ECT-R 2]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D
Sbjct: 1 MNNGTVKWFNAEKGFGFIERED----GSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--EQAANVVKI 66
>gi|70726510|ref|YP_253424.1| major cold shock protein CspA [Staphylococcus haemolyticus
JCSC1435]
gi|223043278|ref|ZP_03613325.1| conserved domain protein [Staphylococcus capitis SK14]
gi|239637089|ref|ZP_04678083.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|289550810|ref|YP_003471714.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01]
gi|314933579|ref|ZP_07840944.1| conserved domain protein [Staphylococcus caprae C87]
gi|118572258|sp|Q4L6A7|CSPA_STAHJ RecName: Full=Cold shock protein CspA
gi|68447234|dbj|BAE04818.1| major cold shock protein CspA [Staphylococcus haemolyticus
JCSC1435]
gi|222443489|gb|EEE49587.1| conserved domain protein [Staphylococcus capitis SK14]
gi|239597439|gb|EEQ79942.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|289180342|gb|ADC87587.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01]
gi|313653729|gb|EFS17486.1| conserved domain protein [Staphylococcus caprae C87]
gi|330684708|gb|EGG96406.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQDGYKSLEEGQSVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|224542054|ref|ZP_03682593.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM
15897]
gi|224524987|gb|EEF94092.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM
15897]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+ +KGYGFIT EG + D+F+H SA+ + G L EGQ V +D V+ D
Sbjct: 2 TGKVKWFKAEKGYGFITVEGQS---KDIFVHFSAINADGYKTLEEGQTVEFDVVEGDRG- 57
Query: 64 KYSAENLKLVP 74
A N+ +V
Sbjct: 58 -PQAANVTVVE 67
>gi|91977426|ref|YP_570085.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
BisB5]
gi|91683882|gb|ABE40184.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V D
Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQTIEYELV--DN 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus equi 103S]
gi|311888053|emb|CBH47365.1| cold shock protein [Rhodococcus equi 103S]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF H S + G +L E Q V+YD Q
Sbjct: 1 MANGTVKWFNAEKGFGFIAPED---GSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQATNITAI 67
>gi|239617864|ref|YP_002941186.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
gi|239506695|gb|ACR80182.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
Length = 67
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT + G D+F+H SA+ G L EGQ V ++ + G
Sbjct: 2 KGTVKWFSGKKGYGFITMDD----GGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEGPK-G 56
Query: 64 KYSAENLKLVP 74
+ A ++++
Sbjct: 57 RPQAAKVRVIE 67
>gi|317506528|ref|ZP_07964325.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316255167|gb|EFV14440.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 68
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ +G++KW+N +KG+GFITP+ G D+F+H SA+ + G L E Q V ++ +D
Sbjct: 1 MPQGTVKWFNEEKGFGFITPDD---GGKDLFVHFSAITGSTGFRTLQENQRVQFEVQASD 57
Query: 61 ANGKYSAENLKLV 73
A ++ ++
Sbjct: 58 RG--PQAASVSVI 68
>gi|317127375|ref|YP_004093657.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
gi|315472323|gb|ADU28926.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 66
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKSLDEGQAVTFDVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|71737155|ref|YP_275269.1| cold shock domain-containing protein CspD [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|71557708|gb|AAZ36919.1| cold shock domain protein CspD [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 94
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G DD+F H S + G L GQ V+++ +Q
Sbjct: 3 MLNGKVKWFNNAKGYGFIIKDGKP--DDDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 60
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 61 G--LHAVNIAPL 70
>gi|229825450|ref|ZP_04451519.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC
49176]
gi|229790013|gb|EEP26127.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC
49176]
Length = 71
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KGYGFIT + GDDVF+H SA+ G L EGQ VT++ +
Sbjct: 1 MNTGVVKWFNSEKGYGFITNDN---GGDDVFVHFSAINVEGFKTLNEGQKVTFETETDPK 57
Query: 62 N-GKYSAENLKLVP 74
N K A N+ +
Sbjct: 58 NSSKLRAVNVSIAE 71
>gi|115358650|ref|YP_775788.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|170699551|ref|ZP_02890592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171317033|ref|ZP_02906238.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172063386|ref|YP_001811037.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|115283938|gb|ABI89454.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
gi|170135569|gb|EDT03856.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171097817|gb|EDT42639.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171995903|gb|ACB66821.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+Y+ +
Sbjct: 1 MDTGTVKWFNETKGFGFISPDN---GGDDLFAHFSEIRGTGFKTLAEGQKVSYEVKRGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 G--LQASNITP 66
>gi|317126004|ref|YP_004100116.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
gi|315590092|gb|ADU49389.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ S G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFVHYSAIESGGYRELQEGQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 58 G--PQAEKVRGI 67
>gi|16127133|ref|NP_421697.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
gi|221235933|ref|YP_002518370.1| cold shock protein [Caulobacter crescentus NA1000]
gi|13424521|gb|AAK24865.1| cold-shock domain family protein [Caulobacter crescentus CB15]
gi|220965106|gb|ACL96462.1| cold shock protein [Caulobacter crescentus NA1000]
Length = 69
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D+F+H SAV +GL +L EGQ ++Y+ +
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDN---GGADIFVHISAVERSGLGSLNEGQKISYEPEVDRR 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKTSAGQLQ 67
>gi|294677982|ref|YP_003578597.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
gi|294476802|gb|ADE86190.1| cold shock protein CspA-2 [Rhodobacter capsulatus SB 1003]
Length = 68
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G G DVF+H SAV AGL L++ Q ++++ + +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERAGLKALSDNQKISFELI-SGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +LKL+
Sbjct: 57 DGRSSAGDLKLL 68
>gi|295677819|ref|YP_003606343.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|295437662|gb|ADG16832.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G+D+F H S + G L E Q VT++
Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRVDGFKTLQENQKVTFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 58 GK--QAANIKPV 67
>gi|183984791|ref|YP_001853082.1| cold shock protein a, CspA [Mycobacterium marinum M]
gi|183178117|gb|ACC43227.1| cold shock protein a, CspA [Mycobacterium marinum M]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ D+F+H S + +G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNGEKGFGFITPDD---GTKDLFVHYSEIQGSGYRSLEENQRVQFEVEQGTK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQAVGVSAV 67
>gi|84499705|ref|ZP_00997993.1| cold shock protein CspA [Oceanicola batsensis HTCC2597]
gi|84392849|gb|EAQ05060.1| cold shock protein CspA [Oceanicola batsensis HTCC2597]
Length = 68
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P D+F+H SA+ AGL L +GQ VT+D ++
Sbjct: 1 MASGTVKWFNSTKGFGFIEPAD---GKKDIFVHISALERAGLSELKDGQAVTFDI-EDGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRSSAANLAL 67
>gi|253688097|ref|YP_003017287.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754675|gb|ACT12751.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 73
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
++ +S
Sbjct: 58 GNHACLIVPQVAETAS 73
>gi|227112016|ref|ZP_03825672.1| cold shock-like protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 73
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
++ +S
Sbjct: 58 GNHACLIVPQVAEAAS 73
>gi|225850576|ref|YP_002730810.1| hypothetical protein PERMA_1024 [Persephonella marina EX-H1]
gi|225644787|gb|ACO02973.1| conserved domain protein [Persephonella marina EX-H1]
Length = 68
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KGYGFIT + DVF+H SA+A G L EGQ V +D VQ D
Sbjct: 1 MRLTGTVKWFNSKKGYGFITRDD---GQGDVFVHFSAIAENGFKTLEEGQKVEFDVVQED 57
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 58 KG--QKAQNVVKI 68
>gi|92112880|ref|YP_572808.1| cold-shock DNA-binding protein family protein [Chromohalobacter
salexigens DSM 3043]
gi|91795970|gb|ABE58109.1| cold-shock DNA-binding protein family [Chromohalobacter
salexigens DSM 3043]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P E GDD+F+H S + + G +L +GQ V++D Q
Sbjct: 1 MATGTVKWFNDAKGFGFISPA---EGGDDLFVHFSEIQAEGFKSLQDGQEVSFDVTQGKK 57
Query: 62 NGKYSAENLK 71
A N+K
Sbjct: 58 G--LQASNVK 65
>gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54013838|dbj|BAD55208.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 68
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + +G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGSGFRTLEENQKVEFEVGQGTK 57
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 58 G--PQATGVRALS 68
>gi|152977181|ref|YP_001376698.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152025933|gb|ABS23703.1| putative cold-shock DNA-binding domain protein [Bacillus
cytotoxicus NVH 391-98]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H SA+ S G L EGQ V+++ V+ +
Sbjct: 1 MQTGKVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQSEGFKTLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
FRC41]
gi|300685095|gb|ADK28017.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
FRC41]
gi|302205379|gb|ADL09721.1| Cold-shock protein [Corynebacterium pseudotuberculosis C231]
gi|302329933|gb|ADL20127.1| Cold-shock protein [Corynebacterium pseudotuberculosis 1002]
gi|308275617|gb|ADO25516.1| Cold-shock protein [Corynebacterium pseudotuberculosis I19]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ DVF+H S + G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPDD---GSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ + +
Sbjct: 58 G--PQAQQVHAL 67
>gi|225181189|ref|ZP_03734635.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225168158|gb|EEG76963.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI GDDVF+H SA+ S G L EGQ V ++ V+ +
Sbjct: 2 QGKVKWFNAEKGFGFIERSD----GDDVFVHFSAIQSEGFKTLEEGQTVEFEVVEGNRG- 56
Query: 64 KYSAENLKLVP 74
A N+ +VP
Sbjct: 57 -LQAANVTVVP 66
>gi|157364579|ref|YP_001471346.1| cold-shock DNA-binding domain-containing protein [Thermotoga
lettingae TMO]
gi|157315183|gb|ABV34282.1| putative cold-shock DNA-binding domain protein [Thermotoga
lettingae TMO]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ KGYGFIT E G+DVF+H SA+ + G L EGQ V ++ Q +
Sbjct: 1 MFKGTVKWFDSKKGYGFITKE----GGEDVFVHFSAIKTDGFKTLREGQEVEFEVQQGNK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVTPI 66
>gi|16077579|ref|NP_388393.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221308339|ref|ZP_03590186.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221312661|ref|ZP_03594466.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221317584|ref|ZP_03598878.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642]
gi|221321860|ref|ZP_03603154.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY]
gi|321314161|ref|YP_004206448.1| cold-shock protein [Bacillus subtilis BSn5]
gi|729220|sp|P39158|CSPC_BACSU RecName: Full=Cold shock protein CspC
gi|1230546|dbj|BAA04956.1| cold shock protein [Bacillus subtilis]
gi|1881321|dbj|BAA19348.1| COLD SHOCK PROTEIN [Bacillus subtilis]
gi|2393787|gb|AAC45646.1| cold shock protein C [Bacillus subtilis]
gi|2632812|emb|CAB12319.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
gi|291482931|dbj|BAI84006.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195]
gi|320020435|gb|ADV95421.1| cold-shock protein [Bacillus subtilis BSn5]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V++D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSDGFKSLDEGQKVSFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|293376634|ref|ZP_06622862.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
PC909]
gi|325839413|ref|ZP_08166852.1| cold shock protein CspD [Turicibacter sp. HGF1]
gi|292644860|gb|EFF62942.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
PC909]
gi|325490533|gb|EGC92849.1| cold shock protein CspD [Turicibacter sp. HGF1]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI+ E G+DVF+H SA+ G L EGQ V++D V+ +
Sbjct: 1 MNTGTVKWFNAEKGFGFISVE----GGEDVFVHYSAITGEGFKTLEEGQKVSFDIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--AQASNVVKL 66
>gi|304317414|ref|YP_003852559.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|323704655|ref|ZP_08116233.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|302778916|gb|ADL69475.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|323536117|gb|EGB25890.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ +
Sbjct: 1 MVRGKVKWFNAEKGYGFIERE----GGSDVFVHYSAIEQDGFKTLEEGQEVEFDIVEAEK 56
Query: 62 NGKYSAENLKLVP 74
A N+K V
Sbjct: 57 G--PQAANVKKVS 67
>gi|239942860|ref|ZP_04694797.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|239989320|ref|ZP_04709984.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
gi|291446332|ref|ZP_06585722.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|291349279|gb|EFE76183.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIASSGFRELQEGQKVSFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|152967548|ref|YP_001363332.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
SRS30216]
gi|151362065|gb|ABS05068.1| putative cold-shock DNA-binding domain protein [Kineococcus
radiotolerans SRS30216]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P G DVF+H SA+A G NL E V Y+ Q
Sbjct: 1 MAQGTVKWFNGEKGFGFIAPTD---GGPDVFVHYSAIAGNGFRNLEENDQVEYEVTQGAK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQASNVTRL 67
>gi|328951487|ref|YP_004368822.1| cold-shock DNA-binding domain protein [Marinithermus
hydrothermalis DSM 14884]
gi|328451811|gb|AEB12712.1| cold-shock DNA-binding domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 72
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E SG DVF+H SA+ G L EG +VT++ Q
Sbjct: 1 MEKGRVKWFNAEKGYGFIERE----SGGDVFVHFSAINGTGFRTLNEGDVVTFEIKQAAK 56
Query: 62 NGKYSAENLKLVPKSS 77
+A+N+ +V +S
Sbjct: 57 G--PAADNVTVVEPAS 70
>gi|229544073|ref|ZP_04433132.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
gi|229325212|gb|EEN90888.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V++D + +
Sbjct: 1 MEQGKVKWFNSEKGYGFIERE----GGSDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVSKL 66
>gi|182437305|ref|YP_001825024.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777925|ref|ZP_08237190.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178465821|dbj|BAG20341.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326658258|gb|EGE43104.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAASGFRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jostii RHA1]
gi|111025401|ref|YP_707821.1| CspA family cold-shock protein [Rhodococcus jostii RHA1]
gi|110817139|gb|ABG92423.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110824380|gb|ABG99663.1| cold-shock protein, CspA family protein [Rhodococcus jostii RHA1]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI P+ DVF+H S ++ +G +L E Q V ++ Q
Sbjct: 1 MAQGIVKWFNGEKGFGFIAPDD---GTPDVFVHYSEISGSGFKSLDENQRVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--PQATNVRSV 67
>gi|239940492|ref|ZP_04692429.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|239986973|ref|ZP_04707637.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
gi|291443921|ref|ZP_06583311.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|291346868|gb|EFE73772.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNINASGFRELQEGQKVSFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|227544424|ref|ZP_03974473.1| cold-shock protein [Lactobacillus reuteri CF48-3A]
gi|300908271|ref|ZP_07125736.1| cold-shock domain family protein [Lactobacillus reuteri SD2112]
gi|77745315|gb|ABB02558.1| putative cold shock protein [Lactobacillus reuteri]
gi|227185587|gb|EEI65658.1| cold-shock protein [Lactobacillus reuteri CF48-3A]
gi|300894518|gb|EFK87875.1| cold-shock domain family protein [Lactobacillus reuteri SD2112]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT E SGDDVF+H SA+ G +L+EGQ VT++ + +
Sbjct: 1 MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFEVEEGER 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|26246906|ref|NP_752946.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli CFT073]
gi|91209916|ref|YP_539902.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli UTI89]
gi|110804882|ref|YP_688402.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella flexneri 5 str. 8401]
gi|237707154|ref|ZP_04537635.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia sp. 3_2_53FAA]
gi|291281884|ref|YP_003498702.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615]
gi|293414163|ref|ZP_06656812.1| cold shock domain-containing protein CspD [Escherichia coli B185]
gi|293433178|ref|ZP_06661606.1| cold shock domain-containing protein CspD [Escherichia coli B088]
gi|332282225|ref|ZP_08394638.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella sp. D9]
gi|26107306|gb|AAN79489.1|AE016758_93 Cold shock-like protein cspD [Escherichia coli CFT073]
gi|91071490|gb|ABE06371.1| cold shock-like protein CspD [Escherichia coli UTI89]
gi|110614430|gb|ABF03097.1| cold shock protein [Shigella flexneri 5 str. 8401]
gi|222032609|emb|CAP75348.1| Cold shock-like protein cspD [Escherichia coli LF82]
gi|226898364|gb|EEH84623.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia sp. 3_2_53FAA]
gi|281600209|gb|ADA73193.1| putative Cold shock protein [Shigella flexneri 2002017]
gi|290761757|gb|ADD55718.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615]
gi|291323997|gb|EFE63419.1| cold shock domain-containing protein CspD [Escherichia coli B088]
gi|291434221|gb|EFF07194.1| cold shock domain-containing protein CspD [Escherichia coli B185]
gi|332104577|gb|EGJ07923.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella sp. D9]
Length = 84
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 11 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPK 67
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 68 GN--HASVIVPVEVEA 81
>gi|85703999|ref|ZP_01035102.1| cold shock family protein [Roseovarius sp. 217]
gi|85671319|gb|EAQ26177.1| cold shock family protein [Roseovarius sp. 217]
Length = 68
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWYN KG+GFI P+ G DVF+H SA+ AGL L + Q VT+D ++
Sbjct: 1 MANGTVKWYNSTKGFGFIAPDN---GGKDVFVHVSAIERAGLTGLADNQKVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL+L
Sbjct: 57 DGRESASNLQL 67
>gi|299535166|ref|ZP_07048491.1| cold shock protein [Lysinibacillus fusiformis ZC1]
gi|298729483|gb|EFI70033.1| cold shock protein [Lysinibacillus fusiformis ZC1]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ +
Sbjct: 1 MQQGIVKWFNNEKGYGFIECDD----GEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNVVKL 66
>gi|258652266|ref|YP_003201422.1| cold-shock DNA-binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258555491|gb|ACV78433.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
DSM 44233]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI+P+ DVF+H SA++ G +L EGQ V ++ Q+
Sbjct: 1 MAQGTVKWFNAEKGYGFISPDD---GSGDVFVHYSAISGTGYKSLEEGQRVNFEVEQSPK 57
Query: 62 NGKYSAENLK 71
A +
Sbjct: 58 G--PQATGVS 65
>gi|114569736|ref|YP_756416.1| cold-shock DNA-binding protein family protein [Maricaulis maris
MCS10]
gi|114340198|gb|ABI65478.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
Length = 69
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI PE DVF+H SAV +G+ +TEGQ ++++ VQ+
Sbjct: 1 MATGTVKFFNTTKGFGFIQPED---GSTDVFVHISAVERSGMTTITEGQKLSFEVVQDKR 57
Query: 62 NGKYSAENLKLV 73
+GK +AENL+ V
Sbjct: 58 SGKNAAENLQAV 69
>gi|254506150|ref|ZP_05118294.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16]
gi|219550968|gb|EED27949.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16]
Length = 73
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57
Query: 62 NGKYSAENLKLVPK 75
A + V
Sbjct: 58 G--SHASVVTPVEA 69
>gi|320109064|ref|YP_004184654.1| cold-shock DNA-binding domain-containing protein [Terriglobus
saanensis SP1PR4]
gi|319927585|gb|ADV84660.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
SP1PR4]
Length = 67
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ + G+DVF+H +A+ + G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFLSRDN----GEDVFVHHTAIQAQGFRSLQEGQRVEFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ AEN++ V
Sbjct: 57 G--WQAENVRAV 66
>gi|308172349|ref|YP_003919054.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7]
gi|307605213|emb|CBI41584.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7]
gi|328552171|gb|AEB22663.1| cold-shock protein [Bacillus amyloliquefaciens TA208]
gi|328910438|gb|AEB62034.1| cold-shock protein [Bacillus amyloliquefaciens LL3]
Length = 66
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|226322941|ref|ZP_03798459.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
gi|225208727|gb|EEG91081.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFIT E +G+DVF+H S +A G +L EGQ VT+D + +
Sbjct: 1 MNKGTVKWFNAQKGYGFITNES---TGEDVFVHFSGIAGEGYKSLEEGQNVTFDITEGNR 57
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 58 G--LQAVNVTV 66
>gi|192292246|ref|YP_001992851.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
gi|192285995|gb|ACF02376.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 69
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ V+++ +
Sbjct: 1 MTTGTVKWFNGQKGFGFIAPSD---GGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKSSAENLAL 68
>gi|217970098|ref|YP_002355332.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
gi|217507425|gb|ACK54436.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
Length = 69
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFITPEG GDD+F H S + S G +L E Q V ++
Sbjct: 4 QTGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIQSKGFKSLAENQRVEFEVKTGPKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --LQAANIRPL 69
>gi|224476532|ref|YP_002634138.1| putative cold shock protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421139|emb|CAL27953.1| putative cold shock protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 66
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQEGYKSLEEGQAVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|227509605|ref|ZP_03939654.1| CspA family cold shock transcriptional regulator [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227512551|ref|ZP_03942600.1| CspA family cold shock transcriptional regulator [Lactobacillus
buchneri ATCC 11577]
gi|227522777|ref|ZP_03952826.1| CspA family cold shock transcriptional regulator [Lactobacillus
hilgardii ATCC 8290]
gi|227084235|gb|EEI19547.1| CspA family cold shock transcriptional regulator [Lactobacillus
buchneri ATCC 11577]
gi|227090041|gb|EEI25353.1| CspA family cold shock transcriptional regulator [Lactobacillus
hilgardii ATCC 8290]
gi|227190967|gb|EEI71034.1| CspA family cold shock transcriptional regulator [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 79
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G++KW+N DKGYGFIT + DVF+H SA+ G +L EGQ VT D +D
Sbjct: 12 IMKQGTVKWFNADKGYGFITTDDG-----DVFVHFSAINKDGFKSLDEGQHVTLDVEDSD 66
Query: 61 ANGKYSAENLKLVPK 75
A N+ +V
Sbjct: 67 RG--PQAANVTVVDD 79
>gi|161507089|ref|YP_001577043.1| putative cold shock protein [Lactobacillus helveticus DPC 4571]
gi|160348078|gb|ABX26752.1| putative cold shock protein [Lactobacillus helveticus DPC 4571]
Length = 66
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT DVF+H SA+ + G +L EGQ V+YD Q
Sbjct: 1 MQTGTVKWFNADKGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGSR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium diphtheriae NCTC 13129]
gi|38199199|emb|CAE48825.1| cold-shock protein [Corynebacterium diphtheriae]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + G L E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQQVRAI 67
>gi|27379238|ref|NP_770767.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27352389|dbj|BAC49392.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 68
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+NP KGYGFI P GS DVF+H SAV AGL L E Q+V YD V+N
Sbjct: 1 MPQKGTVKWFNPTKGYGFIKPNGS---DKDVFVHISAVERAGLSTLNENQVVEYDLVEN- 56
Query: 61 ANGKYSAENLKL 72
GK SAENLK+
Sbjct: 57 -RGKSSAENLKV 67
>gi|116619951|ref|YP_822107.1| cold-shock DNA-binding protein family protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116223113|gb|ABJ81822.1| cold-shock DNA-binding protein family [Candidatus Solibacter
usitatus Ellin6076]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFI GDDVF+H SA+ + G +L EG V ++ Q
Sbjct: 1 MKEKGTVKWFNAAKGYGFIQR----SGGDDVFVHFSAIQANGYRSLDEGAEVEFEVKQGP 56
Query: 61 ANGKYSAENLKLV 73
AEN+ LV
Sbjct: 57 KG--LQAENVALV 67
>gi|220931385|ref|YP_002508293.1| putative cold-shock DNA-binding domain protein [Halothermothrix
orenii H 168]
gi|219992695|gb|ACL69298.1| putative cold-shock DNA-binding domain protein [Halothermothrix
orenii H 168]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
MV+ G +KW++ KGYGFI E GDDVF+H SA+ + G +L +G+ V ++ ++ D
Sbjct: 1 MVYTGKVKWFDAKKGYGFIERED----GDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGD 56
Query: 61 ANGKYSAENLKL 72
G +A + L
Sbjct: 57 R-GPQAANVVTL 67
>gi|295704907|ref|YP_003597982.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294802566|gb|ADF39632.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MEHGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQATNVRK 65
>gi|74272681|gb|ABA01136.1| putative nucleic acid-binding protein [Chlamydomonas incerta]
Length = 226
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N KG+GFITP G G+D+F+H++ + S G +L EG+ V ++ +
Sbjct: 5 LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEAVEFEV-EAG 60
Query: 61 ANGKYSAENLK 71
+G+ A N+
Sbjct: 61 PDGRSKAVNVT 71
>gi|167754667|ref|ZP_02426794.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402]
gi|237733540|ref|ZP_04564021.1| cold shock DNA-binding protein [Mollicutes bacterium D7]
gi|167705499|gb|EDS20078.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402]
gi|229383373|gb|EEO33464.1| cold shock DNA-binding protein [Coprobacillus sp. D7]
Length = 68
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFIT + E G D+F+H SA+ + G L EGQ+V +D ++D
Sbjct: 1 MSTGKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQVVEFDINESDR 57
Query: 62 NGKYSAENLKL 72
A+N+ +
Sbjct: 58 G--PQAQNVTV 66
>gi|150389111|ref|YP_001319160.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149948973|gb|ABR47501.1| putative cold-shock DNA-binding domain protein [Alkaliphilus
metalliredigens QYMF]
Length = 66
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ +
Sbjct: 1 MKTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAITGDGFKTLEEGQKVEFNVVEGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVAKL 66
>gi|78062299|ref|YP_372207.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
383]
gi|107026255|ref|YP_623766.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|116692558|ref|YP_838091.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170738189|ref|YP_001779449.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|206563468|ref|YP_002234231.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
J2315]
gi|77970184|gb|ABB11563.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
gi|105895629|gb|ABF78793.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
AU 1054]
gi|116650558|gb|ABK11198.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
gi|169820377|gb|ACA94959.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
gi|198039508|emb|CAR55475.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
J2315]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+++ +
Sbjct: 1 MDTGTVKWFNETKGFGFISPDN---GGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 G--LQASNITP 66
>gi|226304760|ref|YP_002764718.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|229492328|ref|ZP_04386135.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226183875|dbj|BAH31979.1| probable cold shock protein [Rhodococcus erythropolis PR4]
gi|229320737|gb|EEN86551.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N +KG+GFI EG G DVF+H S + +G +L EGQ V ++ Q
Sbjct: 1 MAQGSVKWFNGEKGFGFIEQEG---GGPDVFVHYSEIQGSGYKSLDEGQKVEFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A+N++ +
Sbjct: 58 G--PQAQNVRAI 67
>gi|302545223|ref|ZP_07297565.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|302462841|gb|EFL25934.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI +G G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAEKGYGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|157692698|ref|YP_001487160.1| cold shock protein [Bacillus pumilus SAFR-032]
gi|194016855|ref|ZP_03055468.1| conserved domain protein [Bacillus pumilus ATCC 7061]
gi|157681456|gb|ABV62600.1| cold shock protein [Bacillus pumilus SAFR-032]
gi|194011461|gb|EDW21030.1| conserved domain protein [Bacillus pumilus ATCC 7061]
Length = 66
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKI 66
>gi|9968446|emb|CAC06102.1| cold shock protein [Lactobacillus plantarum]
Length = 66
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G DVF+H SA+ G +L EGQ V +D ++D
Sbjct: 1 MEHGTVKWFNADKGFGFITREN----GSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 GPP--AANVTK 65
>gi|315659813|ref|ZP_07912672.1| cold-shock protein [Staphylococcus lugdunensis M23590]
gi|315495101|gb|EFU83437.1| cold-shock protein [Staphylococcus lugdunensis M23590]
Length = 82
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G+DVF+H S +A G L EGQ V +D +
Sbjct: 17 MNNGTVKWFNAEKGFGFIERED----GNDVFVHFSGIAGEGYKTLEEGQKVEFDITEGQR 72
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 73 GD--QATNVVV 81
>gi|115360542|ref|YP_777679.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|115285870|gb|ABI91345.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+
Sbjct: 1 MDTGTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKNGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|288556191|ref|YP_003428126.1| cold shock protein [Bacillus pseudofirmus OF4]
gi|288547351|gb|ADC51234.1| cold shock protein [Bacillus pseudofirmus OF4]
Length = 67
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MTQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAITGEGFKSLDEGQAVEFEIVEGD 56
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 57 RG--PQAANV 64
>gi|40363759|dbj|BAD06324.1| putative glycine-rich protein [Triticum aestivum]
gi|42391853|dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum]
Length = 205
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+PE +D+F+H+SA+ + G +L E +V ++ + D +G
Sbjct: 6 KGTVKWFNVTKGFGFISPED---GSEDLFVHQSAIKADGYRSLNENDVVEFEVITGD-DG 61
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 62 RTKATDVT 69
>gi|314935260|ref|ZP_07842613.1| conserved domain protein [Staphylococcus hominis subsp. hominis
C80]
gi|313656595|gb|EFS20334.1| conserved domain protein [Staphylococcus hominis subsp. hominis
C80]
Length = 75
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E GDDVF+H S +A+ G L EGQ V +D +
Sbjct: 10 MNNGTVKWFNAEKGFGFIERED----GDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQR 65
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 66 G--EQATNVVPV 75
>gi|260589144|ref|ZP_05855057.1| cold-shock domain protein [Blautia hansenii DSM 20583]
gi|331082560|ref|ZP_08331685.1| cold shock-like protein cspLA [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540564|gb|EEX21133.1| cold-shock domain protein [Blautia hansenii DSM 20583]
gi|330400538|gb|EGG80168.1| cold shock-like protein cspLA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD +
Sbjct: 1 MNKGTVKWFNAEKGYGFITGED----GQDVFVHFSAINGEGFKSLEEGQAVSYDLTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--MQAANVEKL 66
>gi|167647171|ref|YP_001684834.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
K31]
gi|167349601|gb|ABZ72336.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V++D +
Sbjct: 1 MATGVVKWFNGTKGFGFIQPDD---GGKDVFVHISAVERAGLRGLDEGQKVSFDTAEE-- 55
Query: 62 NGKYSAENLKLV 73
GK +A NLK +
Sbjct: 56 RGKIAANNLKPL 67
>gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119959164|gb|ABM16169.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
PYR-1]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + +G L E Q V ++ Q+
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRAI 67
>gi|227550363|ref|ZP_03980412.1| CspA family cold shock transcriptional regulator [Enterococcus
faecium TX1330]
gi|257879582|ref|ZP_05659235.1| cold-shock domain-contain protein [Enterococcus faecium
1,230,933]
gi|257882601|ref|ZP_05662254.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,502]
gi|257885024|ref|ZP_05664677.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,501]
gi|257888396|ref|ZP_05668049.1| cold-shock domain-contain protein [Enterococcus faecium
1,141,733]
gi|257890250|ref|ZP_05669903.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,410]
gi|257893434|ref|ZP_05673087.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,408]
gi|257897230|ref|ZP_05676883.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
gi|257899231|ref|ZP_05678884.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
gi|258616807|ref|ZP_05714577.1| cold-shock domain-contain protein [Enterococcus faecium DO]
gi|260559753|ref|ZP_05831933.1| cold-shock domain-containing protein [Enterococcus faecium C68]
gi|261207314|ref|ZP_05922001.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
gi|289566513|ref|ZP_06446936.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
gi|293378002|ref|ZP_06624180.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
gi|293557236|ref|ZP_06675784.1| cold-shock protein [Enterococcus faecium E1039]
gi|293559750|ref|ZP_06676271.1| cold shock protein [Enterococcus faecium E1162]
gi|293567614|ref|ZP_06678958.1| cold-shock protein [Enterococcus faecium E1071]
gi|293570377|ref|ZP_06681434.1| cold-shock protein [Enterococcus faecium E980]
gi|294616534|ref|ZP_06696312.1| cold-shock protein [Enterococcus faecium E1636]
gi|294618375|ref|ZP_06697953.1| cold shock protein [Enterococcus faecium E1679]
gi|294623246|ref|ZP_06702117.1| cold shock protein [Enterococcus faecium U0317]
gi|314938910|ref|ZP_07846177.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|314943096|ref|ZP_07849897.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|314948107|ref|ZP_07851508.1| major cold shock protein CspA [Enterococcus faecium TX0082]
gi|314951627|ref|ZP_07854672.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|314993868|ref|ZP_07859202.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|314996709|ref|ZP_07861732.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|227180502|gb|EEI61474.1| CspA family cold shock transcriptional regulator [Enterococcus
faecium TX1330]
gi|257813810|gb|EEV42568.1| cold-shock domain-contain protein [Enterococcus faecium
1,230,933]
gi|257818259|gb|EEV45587.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,502]
gi|257820876|gb|EEV48010.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,501]
gi|257824450|gb|EEV51382.1| cold-shock domain-contain protein [Enterococcus faecium
1,141,733]
gi|257826610|gb|EEV53236.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,410]
gi|257829813|gb|EEV56420.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,408]
gi|257833795|gb|EEV60216.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
gi|257837143|gb|EEV62217.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
gi|260074421|gb|EEW62743.1| cold-shock domain-containing protein [Enterococcus faecium C68]
gi|260078374|gb|EEW66078.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
gi|289161667|gb|EFD09544.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
gi|291589715|gb|EFF21519.1| cold-shock protein [Enterococcus faecium E1071]
gi|291590581|gb|EFF22312.1| cold-shock protein [Enterococcus faecium E1636]
gi|291595352|gb|EFF26667.1| cold shock protein [Enterococcus faecium E1679]
gi|291597353|gb|EFF28533.1| cold shock protein [Enterococcus faecium U0317]
gi|291600600|gb|EFF30904.1| cold-shock protein [Enterococcus faecium E1039]
gi|291606298|gb|EFF35711.1| cold shock protein [Enterococcus faecium E1162]
gi|291609555|gb|EFF38820.1| cold-shock protein [Enterococcus faecium E980]
gi|292643367|gb|EFF61499.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
gi|313589147|gb|EFR67992.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|313591678|gb|EFR70523.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|313596223|gb|EFR75068.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|313598198|gb|EFR77043.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|313641784|gb|EFS06364.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|313645443|gb|EFS10023.1| major cold shock protein CspA [Enterococcus faecium TX0082]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D ++D
Sbjct: 1 MENGTVKWFNAEKGFGFISRED----GSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|296111480|ref|YP_003621862.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU
11154]
gi|295833012|gb|ADG40893.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU
11154]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGF+T E G+DVF H SA+ G L EGQ V ++ +D
Sbjct: 1 MEKGTVKWFNGEKGYGFVTREN----GEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANITKL 66
>gi|302552862|ref|ZP_07305204.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
gi|302470480|gb|EFL33573.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|261821256|ref|YP_003259362.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
gi|261605269|gb|ACX87755.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
Length = 73
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPK 75
++V
Sbjct: 58 GNHACLIVPQIVEA 71
>gi|254463779|ref|ZP_05077190.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
gi|206684687|gb|EDZ45169.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
Length = 68
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE D+F+H SA+ AG+ L +GQ VT+D ++
Sbjct: 1 MANGTVKWFNSQKGFGFIAPE---HGSRDIFVHISALERAGIQQLDDGQAVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESASNLAL 67
>gi|297584713|ref|YP_003700493.1| cold-shock DNA-binding domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297143170|gb|ADH99927.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
MLS10]
Length = 65
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DDVF+H SA+ G L EGQ VT+D Q
Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQAVTFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|319892401|ref|YP_004149276.1| Cold shock protein CspA [Staphylococcus pseudintermedius
HKU10-03]
gi|317162097|gb|ADV05640.1| Cold shock protein CspA [Staphylococcus pseudintermedius
HKU10-03]
gi|323464494|gb|ADX76647.1| cold shock protein [Staphylococcus pseudintermedius ED99]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQEGYKSLDEGQSVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus equi 103S]
gi|325675220|ref|ZP_08154905.1| cold shock protein A [Rhodococcus equi ATCC 33707]
gi|311887356|emb|CBH46667.1| cold shock protein [Rhodococcus equi 103S]
gi|325553926|gb|EGD23603.1| cold shock protein A [Rhodococcus equi ATCC 33707]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + +G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRAI 67
>gi|297586963|ref|ZP_06945608.1| cold shock protein CspA [Finegoldia magna ATCC 53516]
gi|297574944|gb|EFH93663.1| cold shock protein CspA [Finegoldia magna ATCC 53516]
Length = 81
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFIT E D+F+H+SA+ G L EGQ V+YD ++
Sbjct: 15 IMSNGTVKWFNSTKGFGFITGED----NKDIFVHQSAIQQEGFRTLEEGQKVSYDVEASE 70
Query: 61 ANGKYSAENLKLV 73
+ A N+ +
Sbjct: 71 KGDR--AVNVVKL 81
>gi|212639316|ref|YP_002315836.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
gi|212560796|gb|ACJ33851.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E GDDVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIEVE----GGDDVFVHFTAIQGEGYKTLEEGQAVSFEIVQGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|297582825|ref|YP_003698605.1| cold-shock DNA-binding domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297141282|gb|ADH98039.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
MLS10]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ V+ +
Sbjct: 1 MMTGKVKWFNAEKGFGFIERED----GDDVFVHFSAIQAEGFKTLDEGQDVEFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|94498414|ref|ZP_01304972.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
gi|94422169|gb|EAT07212.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
Length = 70
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKGYGFI P+ D F+H +AV AGL L E V+YD Q D
Sbjct: 1 MAITGTVKFFNADKGYGFIAPDD---GTPDAFVHITAVERAGLATLREKDRVSYDLEQ-D 56
Query: 61 ANGKYSAENLK 71
GK +A NL
Sbjct: 57 RRGKMAAVNLT 67
>gi|330830328|ref|YP_004393280.1| Cold shock-like protein cspE [Aeromonas veronii B565]
gi|328805464|gb|AEB50663.1| Cold shock-like protein cspE [Aeromonas veronii B565]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI E G DVF+H SA+ G L EGQ V + Q
Sbjct: 1 MITGTVKFFNETKGFGFIQQEN----GPDVFVHFSAIQGNGFRTLAEGQRVQFSVTQGQK 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVTAL 66
>gi|284007198|emb|CBA72487.1| cold shock-like protein [Arsenophonus nasoniae]
Length = 111
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 47 KGQVKWFNESKGFGFITPSD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFTIEDGSKG- 102
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 103 -PAAANVTAL 111
>gi|218898929|ref|YP_002447340.1| hypothetical protein BCG9842_B1369 [Bacillus cereus G9842]
gi|218545380|gb|ACK97774.1| conserved domain protein [Bacillus cereus G9842]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----GGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|163814818|ref|ZP_02206207.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC
27759]
gi|158450453|gb|EDP27448.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC
27759]
Length = 71
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI+ + E+G DVF+H SA+ + G L EGQ V++D +
Sbjct: 1 MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINADGYKTLNEGQKVSFDVEADPK 57
Query: 62 N-GKYSAENLKLV 73
+ K A N+ +V
Sbjct: 58 DASKERATNVTVV 70
>gi|256380782|ref|YP_003104442.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
gi|255925085|gb|ACU40596.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI G DVF+H S + G L E Q V ++ Q
Sbjct: 1 MAEGTVKWFNAEKGYGFIAQSN---GGPDVFVHYSEIQGNGFRTLEENQRVEFEIGQGTK 57
Query: 62 NGKYSAENLK 71
A+N++
Sbjct: 58 G--PQAQNVR 65
>gi|149916334|ref|ZP_01904854.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
gi|149809788|gb|EDM69640.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
Length = 68
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V YD Q+
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVGYDL-QDGR 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LKL+
Sbjct: 57 DGRQMATDLKLL 68
>gi|223986942|ref|ZP_03636915.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
12042]
gi|223961089|gb|EEF65628.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
12042]
Length = 69
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKGYGFIT + + D+F+H S + G +L EGQ V+++ +
Sbjct: 1 MSTGKVKWFNGDKGYGFITDD---QGQGDIFVHFSGINGNGYKSLEEGQKVSFEVENDAR 57
Query: 62 NGKYSAENLKLV 73
+ K A N+ ++
Sbjct: 58 SNKSRAVNVTVL 69
>gi|194016016|ref|ZP_03054631.1| conserved domain protein [Bacillus pumilus ATCC 7061]
gi|194012371|gb|EDW21938.1| conserved domain protein [Bacillus pumilus ATCC 7061]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----EGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGSR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|56962604|ref|YP_174330.1| cold shock protein CspC [Bacillus clausii KSM-K16]
gi|56908842|dbj|BAD63369.1| cold shock protein CspC [Bacillus clausii KSM-K16]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V++D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIERED----GDDVFVHFSAIQSEGFKSLDEGQKVSFDIEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVQK 65
>gi|253997134|ref|YP_003049198.1| cold-shock DNA-binding domain-containing protein [Methylotenera
mobilis JLW8]
gi|253983813|gb|ACT48671.1| cold-shock DNA-binding domain protein [Methylotenera mobilis
JLW8]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ GDD+F H SA+ +G +L E + V++D
Sbjct: 1 MATGLVKWFNDSKGFGFITPD---AGGDDLFAHFSAINDSGYKSLKENERVSFDVTDGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QASNIQKI 67
>gi|183396658|dbj|BAG28257.1| hypothetical protein [Desulfotignum balticum]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G DVF+H S + + G +L EG V++D +
Sbjct: 1 MANGTVKWFNDAKGFGFIEQED---GGKDVFVHHSGINAMGFKSLNEGDRVSFDISEGQR 57
Query: 62 NGKYSAENLKLV 73
+A N+ +V
Sbjct: 58 G--PAATNVTVV 67
>gi|114563427|ref|YP_750940.1| cold-shock DNA-binding domain-containing protein [Shewanella
frigidimarina NCIMB 400]
gi|114334720|gb|ABI72102.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
NCIMB 400]
gi|149675688|dbj|BAF64723.1| cold shock protein [Shewanella livingstonensis]
Length = 68
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ +
Sbjct: 1 MANGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVCFEVEEGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|322384501|ref|ZP_08058183.1| cold-shock protein molecular chaperone RNA-helicase
co-factor-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321150711|gb|EFX44186.1| cold-shock protein molecular chaperone RNA-helicase
co-factor-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 76
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+ +
Sbjct: 12 QTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKTLDEGQRVEFNVVEGNRG 67
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 68 --PQAENVVKL 76
>gi|223985451|ref|ZP_03635510.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM
12042]
gi|223962540|gb|EEF66993.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM
12042]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFIT + G DVF+H SA+ + G L +G+ V+++ VQ+D
Sbjct: 1 MVTGKVKWFNAEKGYGFITTD----EGKDVFVHYSAIQTDGFKTLDDGEAVSFEVVQSDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--EQAANV 63
>gi|50121583|ref|YP_050750.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
gi|49612109|emb|CAG75559.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
Length = 73
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D +
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHEGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
++V S
Sbjct: 58 GNHACLIVPQIVEAVS 73
>gi|320449142|ref|YP_004201238.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
gi|320149311|gb|ADW20689.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
Length = 68
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI E G DVF+H +A+ + G L EG V ++
Sbjct: 1 MKKGTVKWFNAEKGYGFIQQE----EGPDVFVHFTAIEAEGFRTLNEGDRVEFEVEAGRG 56
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 57 GKGPQAKKVRRL 68
>gi|257865157|ref|ZP_05644810.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC30]
gi|257871481|ref|ZP_05651134.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC10]
gi|257874772|ref|ZP_05654425.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC20]
gi|325571583|ref|ZP_08147083.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
gi|257799091|gb|EEV28143.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC30]
gi|257805645|gb|EEV34467.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC10]
gi|257808938|gb|EEV37758.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC20]
gi|325156059|gb|EGC68255.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D +D
Sbjct: 1 MEQGTVKWFNAEKGFGFISRED----GTDVFVHFSAIQGEGFKTLEEGQAVTFDVEDSDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNVNK 65
>gi|149182243|ref|ZP_01860723.1| cold-shock domain family protein [Bacillus sp. SG-1]
gi|148850012|gb|EDL64182.1| cold-shock domain family protein [Bacillus sp. SG-1]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D +
Sbjct: 1 MEHGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQGEGYKSLDEGQEVTFDIEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQATNVQK 65
>gi|295094368|emb|CBK83459.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1]
Length = 71
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI+ + E+G DVF+H SA+ S G L EGQ VT+D +
Sbjct: 1 MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINSDGYKTLNEGQKVTFDVEADPK 57
Query: 62 N-GKYSAENLKLV 73
+ K A N+ +V
Sbjct: 58 DASKERATNVTVV 70
>gi|237746308|ref|ZP_04576788.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
gi|229377659|gb|EEO27750.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
HOxBLS]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G D+F H S + +G +LTEGQ V ++
Sbjct: 1 METGTVKWFNDSKGFGFITPDSH---GADLFAHFSEIQGSGFKSLTEGQKVRFETGAGQK 57
Query: 62 NGKYSAENLKLV 73
A+N++ V
Sbjct: 58 G--PQAKNIQPV 67
>gi|302533879|ref|ZP_07286221.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302442774|gb|EFL14590.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G LTEGQ VT+D Q
Sbjct: 1 MANGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELTEGQRVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|271967211|ref|YP_003341407.1| cold-shock DNA-binding domain-containing protein
[Streptosporangium roseum DSM 43021]
gi|270510386|gb|ACZ88664.1| putative cold-shock DNA-binding domain protein [Streptosporangium
roseum DSM 43021]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF+H SA+ S G L E Q V++ Q
Sbjct: 1 MSEGTVKWFNAEKGFGFIAPDD---GTADVFVHYSAINSGGYRTLEENQRVSFTTTQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 58 G--PQADQVQVI 67
>gi|228905155|ref|ZP_04069162.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL
4222]
gi|229077228|ref|ZP_04209922.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18]
gi|228706059|gb|EEL58354.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18]
gi|228854477|gb|EEM99128.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL
4222]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|182439288|ref|YP_001827007.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|282862092|ref|ZP_06271155.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|302559563|ref|ZP_07311905.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|326779940|ref|ZP_08239205.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178467804|dbj|BAG22324.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|282563117|gb|EFB68656.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|302477181|gb|EFL40274.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|320011359|gb|ADW06209.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
gi|326660273|gb|EGE45119.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVSFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|169349912|ref|ZP_02866850.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM
1552]
gi|169293480|gb|EDS75613.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM
1552]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFIT + E G D+F+H SA+ + G L EGQ+V ++ + D
Sbjct: 1 MSTGKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQIVEFEINETDR 57
Query: 62 NGKYSAENLKL 72
A+N+ +
Sbjct: 58 G--PQAQNVTV 66
>gi|92118897|ref|YP_578626.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91801791|gb|ABE64166.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 69
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G G+DVF+H SAV AGL L EGQ V+++ +
Sbjct: 1 MSTGTVKWFNSQKGFGFIQPDG---GGNDVFVHISAVQRAGLNGLGEGQKVSFETKTDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKASAENLSL 68
>gi|311029190|ref|ZP_07707280.1| cold-shock protein [Bacillus sp. m3-13]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQASNVQK 65
>gi|159042565|ref|YP_001531359.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
shibae DFL 12]
gi|157910325|gb|ABV91758.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
12]
Length = 68
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D ++
Sbjct: 1 MATGTVKWFNATKGFGFIAPDG---GSRDVFVHISAVERAGLTGLEDNQKVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAANLAL 67
>gi|27468004|ref|NP_764641.1| major cold shock protein CspA [Staphylococcus epidermidis ATCC
12228]
gi|73662658|ref|YP_301439.1| cold shock protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|228476062|ref|ZP_04060770.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|282876159|ref|ZP_06285026.1| major cold shock protein CspA [Staphylococcus epidermidis SK135]
gi|314936453|ref|ZP_07843800.1| conserved domain protein [Staphylococcus hominis subsp. hominis
C80]
gi|81842847|sp|Q8CP90|CSPA_STAES RecName: Full=Cold shock protein CspA
gi|118572257|sp|Q5HPE0|CSPA_STAEQ RecName: Full=Cold shock protein CspA
gi|118572259|sp|Q49XK3|CSPA_STAS1 RecName: Full=Cold shock protein CspA
gi|27315549|gb|AAO04683.1|AE016747_180 major cold shock protein CspA [Staphylococcus epidermidis ATCC
12228]
gi|72495173|dbj|BAE18494.1| cold shock protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|228269885|gb|EEK11365.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|281295184|gb|EFA87711.1| major cold shock protein CspA [Staphylococcus epidermidis SK135]
gi|313655072|gb|EFS18817.1| conserved domain protein [Staphylococcus hominis subsp. hominis
C80]
gi|319400756|gb|EFV88975.1| cold shock protein cspB [Staphylococcus epidermidis FRI909]
gi|329729371|gb|EGG65777.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144]
gi|329732908|gb|EGG69253.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028]
gi|329735220|gb|EGG71512.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQEGYKSLEEGQSVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|295838145|ref|ZP_06825078.1| cold-shock domain family protein [Streptomyces sp. SPB74]
gi|295826890|gb|EFG65133.1| cold-shock domain family protein [Streptomyces sp. SPB74]
Length = 127
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H SA+ + L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSALPQD-VETLKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + ++ + +
Sbjct: 56 GD--QALTVTVLDPAPS 70
>gi|302829474|ref|XP_002946304.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
gi|121077603|gb|ABM47305.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
gi|300269119|gb|EFJ53299.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
Length = 242
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ RG++KW+N KG+GFITPEG G+D F+H++ + S G +L EG+ V ++ +
Sbjct: 5 LRQRGTVKWFNATKGFGFITPEG---GGEDFFVHQTNINSDGFRSLREGEAVEFEV-EAG 60
Query: 61 ANGKYSAENLK 71
+G+ A ++
Sbjct: 61 PDGRSKAVSVS 71
>gi|317130365|ref|YP_004096647.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
gi|315475313|gb|ADU31916.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT++ +
Sbjct: 1 MEQGKVKWFNSEKGFGFIERED----GDDVFVHFSAIQGEGFKTLDEGQEVTFEIEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--PQATNVNKV 66
>gi|238919337|ref|YP_002932852.1| hypothetical protein NT01EI_1429 [Edwardsiella ictaluri 93-146]
gi|269138654|ref|YP_003295355.1| major cold shock protein [Edwardsiella tarda EIB202]
gi|238868906|gb|ACR68617.1| conserved domain protein [Edwardsiella ictaluri 93-146]
gi|267984315|gb|ACY84144.1| major cold shock protein [Edwardsiella tarda EIB202]
gi|304558665|gb|ADM41329.1| Cold shock protein CspA [Edwardsiella tarda FL6-60]
Length = 71
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ G D+F+H SA+ S G +L EGQ V ++ A G
Sbjct: 6 TGLVKWFNADKGFGFITPDN---GGSDIFVHFSAIQSNGYKSLDEGQKVAFEVQTGAAKG 62
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 63 -PSAINVTPL 71
>gi|163744665|ref|ZP_02152025.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
gi|161381483|gb|EDQ05892.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
Length = 68
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D+F+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDT---GGKDIFVHISAVERAGLTGLADNQKVTFDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESASNIAL 67
>gi|153832932|ref|ZP_01985599.1| conserved domain protein [Vibrio harveyi HY01]
gi|156976622|ref|YP_001447528.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116]
gi|269963648|ref|ZP_06177971.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3]
gi|148870855|gb|EDL69754.1| conserved domain protein [Vibrio harveyi HY01]
gi|156528216|gb|ABU73301.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116]
gi|269831661|gb|EEZ85797.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3]
Length = 69
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V ++ Q
Sbjct: 5 ATGTVKWFNETKGFGFIQQEN----GPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKG 60
Query: 63 GKYSAENLKLV 73
AE + LV
Sbjct: 61 --PQAEKITLV 69
>gi|148234211|ref|NP_001091131.1| hypothetical protein LOC100036881 [Xenopus laevis]
gi|120538253|gb|AAI29585.1| LOC100036881 protein [Xenopus laevis]
Length = 131
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G+ KW+N +KGYGF+TP+ D+F+H+S + + G +L EG+ V + + ++ +G
Sbjct: 5 TGTCKWFNAEKGYGFLTPDD---GSPDIFVHQSTIHADGFRSLAEGEPVEFSVITDERSG 61
Query: 64 KYSAENLK 71
K A ++
Sbjct: 62 KLKAADVT 69
>gi|89093057|ref|ZP_01166008.1| Cold shock protein [Oceanospirillum sp. MED92]
gi|89082707|gb|EAR61928.1| Cold shock protein [Oceanospirillum sp. MED92]
Length = 69
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI +SG DVF H SA+A G +L EGQ V + Q
Sbjct: 5 TTGTVKWFNDEKGFGFIE----QQSGPDVFAHFSAIAGDGFKSLQEGQQVEFTVAQGQKG 60
Query: 63 GKYSAENLKLV 73
AEN++ +
Sbjct: 61 --PQAENIRPL 69
>gi|81428762|ref|YP_395762.1| cold shock protein CspA family protein [Lactobacillus sakei
subsp. sakei 23K]
gi|78610404|emb|CAI55454.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
subsp. sakei 23K]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G DVF H SA+ G +L EGQ V++D +D
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GKDVFAHFSAIQGDGYKSLDEGQAVSFDVEDSDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNIVKL 66
>gi|13475232|ref|NP_106796.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14025983|dbj|BAB52582.1| cold shock protein [Mesorhizobium loti MAFF303099]
Length = 70
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL LT+GQ + Y+ Q+
Sbjct: 1 MAIGTVKWFNSTKGFGFIQPDN---GGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRR 57
Query: 62 NGKYSAENLKL 72
GK SA NL
Sbjct: 58 TGKSSAGNLSK 68
>gi|302037950|ref|YP_003798272.1| cold shock protein CspA [Candidatus Nitrospira defluvii]
gi|300606014|emb|CBK42347.1| Cold shock protein CspA [Candidatus Nitrospira defluvii]
Length = 72
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KG+GFI + GDDVF+H SA+ G L EG+ V +D VQ
Sbjct: 1 MKTKGTVKWFNDRKGFGFIRLD----GGDDVFVHYSALQGEGFKTLKEGENVEFDIVQG- 55
Query: 61 ANGKYSAENLKLVPKSS 77
A G +A LK + +S
Sbjct: 56 AKGPQAANVLKDLATAS 72
>gi|161520712|ref|YP_001584139.1| cold-shock DNA-binding domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189353104|ref|YP_001948731.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221196347|ref|ZP_03569394.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2M]
gi|221203021|ref|ZP_03576040.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2]
gi|221209974|ref|ZP_03582955.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD1]
gi|160344762|gb|ABX17847.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC 17616]
gi|189337126|dbj|BAG46195.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221170662|gb|EEE03128.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD1]
gi|221176955|gb|EEE09383.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2]
gi|221182901|gb|EEE15301.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
CGD2M]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ GDD+F H S + G LT+ Q V+Y+ +
Sbjct: 1 MDTGTVKWFNETKGFGFISPDN---GGDDLFAHFSEIRGTGFKTLTDNQKVSYEVKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQASNITPL 67
>gi|304407201|ref|ZP_07388854.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304343642|gb|EFM09483.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+ E G+DVF+H SA+ G +L EGQ V ++ VQ +
Sbjct: 1 MVTGTVKWFNAEKGFGFISVE----GGEDVFVHFSAIQGDGYKSLDEGQSVEFNIVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--AQAENVVKL 66
>gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica]
Length = 69
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP DVF+H SA+ S G L EGQ V ++
Sbjct: 5 TGTVKWFNESKGFGFITPAD---GSKDVFVHFSAIQSDGFKTLAEGQKVEFEIQDGQKG- 60
Query: 64 KYSAENLK 71
SA N+
Sbjct: 61 -PSAANVT 67
>gi|239930071|ref|ZP_04687024.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291438408|ref|ZP_06577798.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291341303|gb|EFE68259.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|186475442|ref|YP_001856912.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184191901|gb|ACC69866.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFIT + G+D+F H S + + G +L E Q V++D
Sbjct: 1 METGIVKWFNDAKGYGFITSDT---GGEDLFAHFSEIRADGFKSLKENQRVSFDVKAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--RQAANIQPL 67
>gi|257869655|ref|ZP_05649308.1| cold-shock protein [Enterococcus gallinarum EG2]
gi|257803819|gb|EEV32641.1| cold-shock protein [Enterococcus gallinarum EG2]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFIT + GDDVF+H SA+ G +L EGQ V + V+
Sbjct: 1 MEHGKVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFSIVEGAR 56
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 57 G--PQAAEVTKI 66
>gi|312144474|ref|YP_003995920.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
gi|311905125|gb|ADQ15566.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
Length = 67
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D
Sbjct: 1 MIYTGTVKWFDGKKGFGFIERED----GDDVFAHFSAIQEDGFKNLEEGQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 RG--PQAANIVKL 67
>gi|260768159|ref|ZP_05877093.1| cold shock protein CspD [Vibrio furnissii CIP 102972]
gi|260616189|gb|EEX41374.1| cold shock protein CspD [Vibrio furnissii CIP 102972]
gi|315179859|gb|ADT86773.1| cold shock-like protein CspD [Vibrio furnissii NCTC 11218]
Length = 73
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y+ Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIKMDGYRTLKAGQQVSYEVEQGPK 57
Query: 62 NGKYSAENLKLVP 74
Y A ++ +
Sbjct: 58 G--YHASSVVPIE 68
>gi|225568420|ref|ZP_03777445.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM
15053]
gi|225162648|gb|EEG75267.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM
15053]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++RG++KW+N KGYGFI+ E +G+DVF+H S + G +L EGQ V ++ +
Sbjct: 1 MNRGTVKWFNNQKGYGFISDE----TGNDVFVHYSGLNMDGFKSLEEGQEVEFEVTEGSK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--PQAVNVTRV 66
>gi|251794220|ref|YP_003008951.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
gi|247541846|gb|ACS98864.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ VQ +
Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIVGEGFKTLEEGQRVEFNVVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|237732132|ref|ZP_04562613.1| stationary phase/starvation inducible regulatory protein CspD
[Citrobacter sp. 30_2]
gi|283832491|ref|ZP_06352232.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220]
gi|226907671|gb|EEH93589.1| stationary phase/starvation inducible regulatory protein CspD
[Citrobacter sp. 30_2]
gi|291072151|gb|EFE10260.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220]
Length = 74
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
S + ++ +
Sbjct: 58 GNHAS-VIVPVIEAEA 72
>gi|75677234|ref|YP_319655.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|74422104|gb|ABA06303.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
Length = 66
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N
Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|167838062|ref|ZP_02464921.1| cold-shock domain family protein [Burkholderia thailandensis
MSMB43]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPEG G+D+F H S + G L E Q V ++
Sbjct: 1 MAIGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|56695352|ref|YP_165700.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
gi|56677089|gb|AAV93755.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
Length = 68
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE E G DVF+H SAV +GL L + Q V+Y+
Sbjct: 1 MATGTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYELKPG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +LKL+
Sbjct: 57 DGRESAVDLKLL 68
>gi|84497345|ref|ZP_00996167.1| putative cold shock protein [Janibacter sp. HTCC2649]
gi|84382233|gb|EAP98115.1| putative cold shock protein [Janibacter sp. HTCC2649]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ S G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFVHYSAIESGGYRELQEGQKVEFDVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AE +K +
Sbjct: 58 G--PQAEKVKGI 67
>gi|261408402|ref|YP_003244643.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|315648512|ref|ZP_07901611.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|329929384|ref|ZP_08283132.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
gi|261284865|gb|ACX66836.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
Y412MC10]
gi|315276206|gb|EFU39552.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|328936471|gb|EGG32916.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
Length = 65
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KGYGFI+ E G+DVF+H SA+ G +L EGQ V +D + +
Sbjct: 2 KGTVKWFNAEKGYGFISVE----GGEDVFVHFSAIQEEGFKSLEEGQAVEFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVTKL 65
>gi|309388475|gb|ADO76355.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
DSM 2228]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M++ G++KW++ KGYGFI E GDDVF+H SA+ G L + Q V ++ V+ D
Sbjct: 1 MIYTGTVKWFDAKKGYGFIERED----GDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 57 RG--PQAENVVKL 67
>gi|259047285|ref|ZP_05737686.1| cold shock protein [Granulicatella adiacens ATCC 49175]
gi|259036061|gb|EEW37316.1| cold shock protein [Granulicatella adiacens ATCC 49175]
Length = 75
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ S G L EGQ V +D +
Sbjct: 10 MEQGTVKWFNSEKGFGFIERE----GGNDVFVHFSAIQSEGFKTLEEGQAVQFDVEEGAR 65
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 66 G--PQAANVVKL 75
>gi|163761575|ref|ZP_02168646.1| cold shock protein [Hoeflea phototrophica DFL-43]
gi|162281171|gb|EDQ31471.1| cold shock protein [Hoeflea phototrophica DFL-43]
Length = 70
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI P+ G D+F+H SAV ++G+ L E Q V++D +
Sbjct: 1 MAETGTVKFFNVDKGFGFIKPDN---GGADIFVHISAVQASGMTGLEENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKL 72
A NL+L
Sbjct: 58 RGKGPKAVNLRL 69
>gi|20803889|emb|CAD31467.1| PROBABLE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN
[Mesorhizobium loti R7A]
Length = 70
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL NL +GQ + Y+ Q+
Sbjct: 1 MATGTVKWFNSTKGFGFIQPDD---DGQDVFVHISAVERAGLSNLVDGQKIKYEIEQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA +L V
Sbjct: 58 SGKSSAGSLSKV 69
>gi|323487951|ref|ZP_08093207.1| cold shock protein [Planococcus donghaensis MPA1U2]
gi|323398375|gb|EGA91165.1| cold shock protein [Planococcus donghaensis MPA1U2]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q
Sbjct: 1 MEQGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQEVTFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|299537233|ref|ZP_07050536.1| major cold shock protein [Lysinibacillus fusiformis ZC1]
gi|298727474|gb|EFI68046.1| major cold shock protein [Lysinibacillus fusiformis ZC1]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ S G L EGQ V + +
Sbjct: 1 MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQSDGFKTLEEGQKVEFGVEEGSR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVVKL 66
>gi|255587236|ref|XP_002534193.1| cold shock domain containing proteins, putative [Ricinus
communis]
gi|223525720|gb|EEF28187.1| cold shock domain containing proteins, putative [Ricinus
communis]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H S + + G +L E Q V+++
Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSEIKTEGFKSLQENQKVSFEVKMGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 58 GK--QAANIKPV 67
>gi|126653234|ref|ZP_01725352.1| cold shock protein [Bacillus sp. B14905]
gi|126589985|gb|EAZ84113.1| cold shock protein [Bacillus sp. B14905]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ +
Sbjct: 1 MQHGIVKWFNNEKGYGFIECDD----GEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNVVKL 66
>gi|28377002|ref|NP_783894.1| cold shock protein CspL [Lactobacillus plantarum WCFS1]
gi|254555197|ref|YP_003061614.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
gi|308179219|ref|YP_003923347.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|2493769|sp|P96349|CSP2_LACPL RecName: Full=Cold shock protein 2
gi|1869948|emb|CAA70139.1| cold shock protein [Lactobacillus plantarum]
gi|9968448|emb|CAC06093.1| cold shock protein [Lactobacillus plantarum]
gi|28269833|emb|CAD62730.1| cold shock protein CspL [Lactobacillus plantarum WCFS1]
gi|254044124|gb|ACT60917.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
gi|308044710|gb|ADN97253.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G DVF+H SA+ + G L EGQ VTYD Q D
Sbjct: 1 MKNGTVKWFNADKGFGFITGED----GTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGDR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQATNVQP 65
>gi|239997241|ref|ZP_04717765.1| putative cold shock-like protein cspG [Alteromonas macleodii ATCC
27126]
gi|332142943|ref|YP_004428681.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
'Deep ecotype']
gi|332143012|ref|YP_004428750.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
'Deep ecotype']
gi|327552965|gb|AEA99683.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
'Deep ecotype']
gi|327553034|gb|AEA99752.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
'Deep ecotype']
Length = 69
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKGYGF+T + G DVF+H A+ S G L EGQ V ++ +
Sbjct: 5 TGTVKWFNADKGYGFLTQDN---GGKDVFVHFRAIISDGYKTLPEGQRVEFEVEEGQKG- 60
Query: 64 KYSAENLKLV 73
A N++ +
Sbjct: 61 -LQAANVQAI 69
>gi|329298247|ref|ZP_08255583.1| cold shock-like protein CspD [Plautia stali symbiont]
Length = 73
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G +D+F H S + G L GQ V +D +
Sbjct: 1 METGTVKWFNNTKGFGFICPIG---GDNDIFAHYSTIQMEGYRTLKAGQHVQFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|288555145|ref|YP_003427080.1| cold shock protein [Bacillus pseudofirmus OF4]
gi|288546305|gb|ADC50188.1| cold shock protein [Bacillus pseudofirmus OF4]
Length = 65
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V+++ Q
Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKSLEEGQAVSFEIEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|41406767|ref|NP_959603.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118467308|ref|YP_880121.1| hypothetical protein MAV_0852 [Mycobacterium avium 104]
gi|254773743|ref|ZP_05215259.1| hypothetical protein MaviaA2_03582 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395117|gb|AAS02986.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118168595|gb|ABK69492.1| conserved domain protein [Mycobacterium avium 104]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ D+F+H S + +G +L E Q V +D Q
Sbjct: 1 MAQGTVKWFNGEKGFGFITPDD---GTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQGAK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQAVGVSTV 67
>gi|330981383|gb|EGH79486.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 91
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EG + +D+F H SA+ G L GQ V ++ Q
Sbjct: 1 MIEGKVKWFNNAKGFGFINAEG---NNEDLFAHFSAIEMDGYKTLKAGQKVRFEVAQGPK 57
Query: 62 NGKYSAENLKLVPK 75
A +K +
Sbjct: 58 G--LHAVKIKGLED 69
>gi|319938152|ref|ZP_08012550.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1]
gi|319806673|gb|EFW03322.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1]
Length = 68
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+ DKG+GFIT EG DVF+H SA+ + G L EGQ V +D V+ D
Sbjct: 1 MSTGKVKWFKSDKGFGFITLEG---ENKDVFVHFSAINTDGFKTLEEGQTVEFDIVEGDR 57
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 58 G--PQAANVTVI 67
>gi|218780300|ref|YP_002431618.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
gi|218761684|gb|ACL04150.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ S+G +L EG VT+D Q
Sbjct: 1 MANGTVKWFNDQKGFGFIEQD----GGPDVFVHHSAINSSGFRSLNEGDRVTFDIEQGAK 56
Query: 62 NGKYSAENLKL 72
SA+N+ +
Sbjct: 57 G--PSAKNVTV 65
>gi|240145038|ref|ZP_04743639.1| cold shock protein B [Roseburia intestinalis L1-82]
gi|257202861|gb|EEV01146.1| cold shock protein B [Roseburia intestinalis L1-82]
gi|291535362|emb|CBL08474.1| cold-shock DNA-binding protein family [Roseburia intestinalis
M50/1]
gi|291538173|emb|CBL11284.1| cold-shock DNA-binding protein family [Roseburia intestinalis
XB6B4]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI+ E G+DVF+H SA+ G L +G+ V ++ + +
Sbjct: 1 MQQGTVKWFNAKKGYGFISDE----QGNDVFVHFSALNMDGFKELKDGERVEFEVTEGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVSRI 66
>gi|85860691|ref|YP_462893.1| cold shock protein [Syntrophus aciditrophicus SB]
gi|85723782|gb|ABC78725.1| cold shock protein [Syntrophus aciditrophicus SB]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ + G +L+EG V++D V
Sbjct: 1 MPEGTVKWFNDSKGFGFIEQD----GGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKK 56
Query: 62 NGKYSAENLKLV 73
SAEN++ V
Sbjct: 57 G--PSAENVRKV 66
>gi|92117648|ref|YP_577377.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800542|gb|ABE62917.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P DVF+H SAV AGL L E Q++ YD V+N
Sbjct: 1 MQKGTVKWFNPTKGYGFIKPMN---DDRDVFVHISAVERAGLSTLNENQVIEYDLVEN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|85860950|ref|YP_463154.1| cold shock protein [Syntrophus aciditrophicus SB]
gi|85724041|gb|ABC78984.1| cold shock protein [Syntrophus aciditrophicus SB]
Length = 132
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G+DVF+H SA+ G L EG V +D V+ +
Sbjct: 67 MSEGTVKWFNASKGFGFIAQDN----GNDVFVHFSAIKMEGYKALEEGARVRFDVVKGNK 122
Query: 62 NGKYSAENLKLV 73
+A+N++L+
Sbjct: 123 G--PAADNVELL 132
>gi|116618954|ref|YP_819325.1| cold-shock DNA-binding protein family protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227431399|ref|ZP_03913450.1| CspA family cold shock transcriptional regulator [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|48727558|gb|AAT46080.1| cold shock protein [Leuconostoc mesenteroides]
gi|116097801|gb|ABJ62952.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|227352862|gb|EEJ43037.1| CspA family cold shock transcriptional regulator [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT E SG+DVF H SA+ G L EGQ VT+D +D
Sbjct: 1 MEKGTVKWFNGEKGYGFITRE----SGEDVFAHFSAIQGDGFKTLDEGQAVTFDVETSDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQATNITK 65
>gi|257867741|ref|ZP_05647394.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC30]
gi|257869629|ref|ZP_05649282.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
gi|257874069|ref|ZP_05653722.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC10]
gi|257876646|ref|ZP_05656299.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC20]
gi|325571055|ref|ZP_08146627.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
gi|257801824|gb|EEV30727.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC30]
gi|257803793|gb|EEV32615.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
gi|257808233|gb|EEV37055.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC10]
gi|257810812|gb|EEV39632.1| cold-shock domain-contain protein [Enterococcus casseliflavus
EC20]
gi|325156140|gb|EGC68326.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
Length = 66
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G+DVF+H SA+ G L EGQ VT+D
Sbjct: 1 METGTVKWFNSDKGFGFITAEN----GNDVFVHFSAIQGEGFKTLEEGQAVTFDIEDGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|118595186|ref|ZP_01552533.1| putative cold-shock protein [Methylophilales bacterium HTCC2181]
gi|118440964|gb|EAV47591.1| putative cold-shock protein [Methylophilales bacterium HTCC2181]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE GDD+F H SA+ G +L EG+ VT++
Sbjct: 1 MATGTVKWFNDSKGFGFITPED---GGDDLFAHFSAIVDDGYKSLKEGETVTFEVTDGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|117929224|ref|YP_873775.1| cold-shock DNA-binding protein family protein [Acidothermus
cellulolyticus 11B]
gi|117649687|gb|ABK53789.1| cold-shock DNA-binding protein family [Acidothermus
cellulolyticus 11B]
Length = 65
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI + G DVF+H SA+ G L E Q V ++ Q
Sbjct: 2 QGVVKWFNAEKGFGFIAVD----GGSDVFVHYSAIQGEGYRTLAENQRVDFEITQGQKG- 56
Query: 64 KYSAENLKLV 73
A N++ +
Sbjct: 57 -PQAANVRPI 65
>gi|289679173|ref|ZP_06500063.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae FF5]
gi|330900613|gb|EGH32032.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 91
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EG + +D+F H SA+ G L GQ V ++ Q
Sbjct: 1 MIEGKVKWFNNAKGFGFINAEG---NDEDLFAHFSAIEMDGYKTLKAGQKVRFEVAQGPK 57
Query: 62 NGKYSAENLKLVPK 75
A +K +
Sbjct: 58 G--LHAVKIKGLED 69
>gi|77920396|ref|YP_358211.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
gi|77546479|gb|ABA90041.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
DSM 2380]
Length = 85
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ G +L EG V++D V
Sbjct: 20 MAEGTVKWFNDAKGFGFIEQDN----GPDVFVHFSAIQGEGFKSLVEGDRVSFDVVDGPK 75
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 76 G--PQAANVQK 84
>gi|50955888|ref|YP_063176.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952370|gb|AAT90071.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 67
Score = 89.3 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI P+ + DVF H + + G L E Q V Y+ Q
Sbjct: 1 MAIGTVKWFNAEKGYGFIAPDDGSV---DVFAHFREIQTQGFRTLEENQKVEYELTQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--MQASNIRAV 67
>gi|328880509|emb|CCA53748.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q
Sbjct: 1 MANGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|313902955|ref|ZP_07836350.1| cold-shock DNA-binding protein family [Thermaerobacter
subterraneus DSM 13965]
gi|313466679|gb|EFR62198.1| cold-shock DNA-binding protein family [Thermaerobacter
subterraneus DSM 13965]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KGYGFIT + DVF+H SA+ AG L EGQ VT+D V+ +
Sbjct: 2 TGTVKWFNAEKGYGFITRDD---GQGDVFVHFSAIVGAGYRTLEEGQKVTFDVVEGEKGP 58
Query: 64 KYSAENLKLV 73
K A+N+ ++
Sbjct: 59 K--AQNVIVL 66
>gi|225848261|ref|YP_002728424.1| hypothetical protein SULAZ_0432 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644220|gb|ACN99270.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW++ KG+GFIT + +G D+F+H SA+ G NL EGQ V ++ VQ +
Sbjct: 1 MKVTGTVKWFDSKKGFGFITRDD---NGQDIFVHFSAIQGRGFKNLEEGQKVEFEIVQEE 57
Query: 61 ANGKYSAENLKL 72
+ +A +KL
Sbjct: 58 KGPR-AANVVKL 68
>gi|27377058|ref|NP_768587.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|12620649|gb|AAG60925.1|AF322013_44 ID534 [Bradyrhizobium japonicum]
gi|27350201|dbj|BAC47212.1| blr1947 [Bradyrhizobium japonicum USDA 110]
Length = 120
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+NP KGYGF+ P+ G DVF+H SAV AG +L EG V Y+ V N +GK
Sbjct: 56 GTVKWFNPTKGYGFVAPDD---GGKDVFVHISAVEKAGYTSLVEGAKVGYELVTN-RSGK 111
Query: 65 YSAENLKL 72
+AENL+L
Sbjct: 112 QAAENLRL 119
>gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315446276|ref|YP_004079155.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
gi|145214470|gb|ABP43874.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
PYR-GCK]
gi|315264579|gb|ADU01321.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + +G L E Q V ++ Q+
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATGVRAV 67
>gi|87119411|ref|ZP_01075308.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121]
gi|86164887|gb|EAQ66155.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121]
Length = 97
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G DVF+H A+ G L EGQ VT++ Q
Sbjct: 35 GIVKWFNDEKGFGFIERE----GGPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKG-- 88
Query: 65 YSAENLKLV 73
AEN+ +V
Sbjct: 89 PQAENVSIV 97
>gi|52220784|ref|YP_086797.1| putative cold shock protein [Lactobacillus plantarum]
gi|254555218|ref|YP_003061635.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
gi|300766776|ref|ZP_07076690.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|21541531|gb|AAM61873.1|AF508808_2 cold shock protein [Lactobacillus plantarum]
gi|51965675|emb|CAF32413.1| putative cold shock protein [Lactobacillus plantarum]
gi|254044145|gb|ACT60938.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
gi|300495652|gb|EFK30806.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC
14917]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT DVF+H S++ + G +L EGQ V+Y+ Q D
Sbjct: 1 MQSGTVKWFNADKGFGFIT----GSDNKDVFVHFSSIQTDGFKSLDEGQKVSYEVEQGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|42784343|ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
gi|206976819|ref|ZP_03237722.1| cold shock protein CspC [Bacillus cereus H3081.97]
gi|217962672|ref|YP_002341246.1| cold shock protein CspC [Bacillus cereus AH187]
gi|222098643|ref|YP_002532701.1| cold shock protein cspc [Bacillus cereus Q1]
gi|42740274|gb|AAS44198.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
gi|206744954|gb|EDZ56358.1| cold shock protein CspC [Bacillus cereus H3081.97]
gi|217063489|gb|ACJ77739.1| cold shock protein CspC [Bacillus cereus AH187]
gi|221242702|gb|ACM15412.1| cold shock protein CspC [Bacillus cereus Q1]
gi|324329136|gb|ADY24396.1| cold shock protein CspC [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+
Sbjct: 1 MNMQGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEGA 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 RG--PQAANVVKL 67
>gi|160894411|ref|ZP_02075187.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50]
gi|156863722|gb|EDO57153.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50]
Length = 71
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KGYGFI+ DVF+H SA+ G L EGQ VT+D ++
Sbjct: 1 MNNGTVKWFNAEKGYGFISNND---GSGDVFVHFSAIQGEGYKTLVEGQQVTFDTEEDPK 57
Query: 62 NG-KYSAENLKLVP 74
G + A N+ +V
Sbjct: 58 GGSRTRATNVVIVK 71
>gi|86139271|ref|ZP_01057841.1| cold shock family protein [Roseobacter sp. MED193]
gi|85824115|gb|EAQ44320.1| cold shock family protein [Roseobacter sp. MED193]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV +GL L + Q V+Y+ Q
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDN---GGSDVFVHISAVERSGLTGLADNQKVSYEM-QPGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +L L+
Sbjct: 57 DGRESAVDLALL 68
>gi|15595653|ref|NP_249147.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|107099440|ref|ZP_01363358.1| hypothetical protein PaerPA_01000452 [Pseudomonas aeruginosa
PACS2]
gi|116054185|ref|YP_788629.1| putative cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|152984051|ref|YP_001345954.1| putative cold-shock protein [Pseudomonas aeruginosa PA7]
gi|218889196|ref|YP_002438060.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|254237314|ref|ZP_04930637.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
gi|254243552|ref|ZP_04936874.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
gi|296386954|ref|ZP_06876453.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
gi|313111918|ref|ZP_07797708.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
gi|9946316|gb|AAG03845.1|AE004483_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|115589406|gb|ABJ15421.1| putative major cold shock protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169245|gb|EAZ54756.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
gi|126196930|gb|EAZ60993.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
gi|150959209|gb|ABR81234.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
gi|218769419|emb|CAW25179.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|310884210|gb|EFQ42804.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFITPE SG DVF+H A+ G L EGQ V+++ VQ
Sbjct: 3 RQNGTVKWFNETKGYGFITPE----SGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQK 58
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 59 G--MQAERVQVI 68
>gi|317122838|ref|YP_004102841.1| cold-shock DNA-binding protein family [Thermaerobacter
marianensis DSM 12885]
gi|315592818|gb|ADU52114.1| cold-shock DNA-binding protein family [Thermaerobacter
marianensis DSM 12885]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KGYGFIT + DVF+H SA+ G L EGQ VT+D V+ +
Sbjct: 2 TGTVKWFNAEKGYGFITRDD---GQGDVFVHFSAIVGTGYRTLEEGQKVTFDVVEGEKGP 58
Query: 64 KYSAENLKLV 73
K A+N+ ++
Sbjct: 59 K--AQNVVVL 66
>gi|312144105|ref|YP_003995551.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
gi|311904756|gb|ADQ15197.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
MV+ G +KW++ KGYGFI E GDDVF+H SA+ G L+E Q V ++ V+ D
Sbjct: 1 MVYTGKVKWFDEKKGYGFIERED----GDDVFVHFSAIEQEGFKTLSEDQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
AEN+ ++
Sbjct: 57 RG--PQAENVVVI 67
>gi|163941513|ref|YP_001646397.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163863710|gb|ABY44769.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGFKSLDEGQSVTFEVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQATNVQK 65
>gi|85704998|ref|ZP_01036098.1| cold shock family protein [Roseovarius sp. 217]
gi|149202366|ref|ZP_01879339.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
gi|85670320|gb|EAQ25181.1| cold shock family protein [Roseovarius sp. 217]
gi|149144464|gb|EDM32495.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G G DVF+H SAV +GL L + Q V ++ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERSGLTGLADNQKVGFELQEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +L+L+
Sbjct: 57 DGRQMASDLRLL 68
>gi|294629991|ref|ZP_06708551.1| cold-shock domain family protein [Streptomyces sp. e14]
gi|292833324|gb|EFF91673.1| cold-shock domain family protein [Streptomyces sp. e14]
Length = 127
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVDALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+ + +
Sbjct: 56 GD--QALSVTLLEPTPS 70
>gi|260769345|ref|ZP_05878278.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
gi|260614683|gb|EEX39869.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
gi|315181877|gb|ADT88790.1| cold-shock DNA-binding domain protein [Vibrio furnissii NCTC
11218]
Length = 70
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFITP+ G D+F+H ++AS G L EGQ V+++ Q +
Sbjct: 5 ATGTVKWFNETKGFGFITPDN---GGADLFVHFRSIASEGFKTLAEGQKVSFNVEQGNKG 61
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 62 --PQAGNVTVI 70
>gi|260433151|ref|ZP_05787122.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416979|gb|EEX10238.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ ++
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-EDGR 56
Query: 62 NGKYSAENLKL 72
+G+ A +LK
Sbjct: 57 DGRQMAADLKP 67
>gi|222153624|ref|YP_002562801.1| cold shock protein CspC [Streptococcus uberis 0140J]
gi|222114437|emb|CAR43247.1| cold shock protein CspC [Streptococcus uberis 0140J]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT E G DVF H S + S G +L EGQ V++D Q
Sbjct: 1 MTNGTVKWFNAEKGFGFITQEN----GTDVFAHFSEIQSNGFKSLDEGQKVSFDLEQGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus jostii RHA1]
gi|226363671|ref|YP_002781453.1| cold shock protein [Rhodococcus opacus B4]
gi|110820857|gb|ABG96141.1| cold shock protein A [Rhodococcus jostii RHA1]
gi|226242160|dbj|BAH52508.1| cold shock protein [Rhodococcus opacus B4]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + +G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATGVRAV 67
>gi|207723599|ref|YP_002253998.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2]
gi|206588801|emb|CAQ35764.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q
Sbjct: 1 MASGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMDGFKTLKEGQRVVFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|288817819|ref|YP_003432166.1| cold shock protein [Hydrogenobacter thermophilus TK-6]
gi|288787218|dbj|BAI68965.1| cold shock protein [Hydrogenobacter thermophilus TK-6]
gi|308751417|gb|ADO44900.1| cold-shock DNA-binding domain protein [Hydrogenobacter
thermophilus TK-6]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW++ +KGYGFIT + + DVF+H SA+ G L +GQ V ++ ++
Sbjct: 1 MALKGTVKWFSKEKGYGFITRDD---NQGDVFVHFSAIQQRGFKTLEQGQRVEFEIEEDS 57
Query: 61 ANGKYSAENLKLVP 74
+ A+N++ +
Sbjct: 58 KGPR--AKNVRPIS 69
>gi|126654483|ref|ZP_01726209.1| cold shock protein [Bacillus sp. B14905]
gi|169828303|ref|YP_001698461.1| cold shock protein [Lysinibacillus sphaericus C3-41]
gi|299537124|ref|ZP_07050427.1| cold shock protein [Lysinibacillus fusiformis ZC1]
gi|126589048|gb|EAZ83279.1| cold shock protein [Bacillus sp. B14905]
gi|168992791|gb|ACA40331.1| Cold shock protein [Lysinibacillus sphaericus C3-41]
gi|298727365|gb|EFI67937.1| cold shock protein [Lysinibacillus fusiformis ZC1]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G L EGQ V ++ V +
Sbjct: 1 MKQGTVKWFNSEKGFGFIEVEGEN----DVFVHFSAIQGEGFKTLDEGQKVEFEVVDGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|253574512|ref|ZP_04851853.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
sp. oral taxon 786 str. D14]
gi|251846217|gb|EES74224.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
sp. oral taxon 786 str. D14]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ VQ +
Sbjct: 1 METGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAITGEGFKTLDEGQRVQFNVVQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVVKL 66
>gi|218900031|ref|YP_002448442.1| cold shock protein CspD [Bacillus cereus G9842]
gi|228903378|ref|ZP_04067509.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|228910715|ref|ZP_04074526.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|228942044|ref|ZP_04104587.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228967983|ref|ZP_04128992.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228974975|ref|ZP_04135536.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981568|ref|ZP_04141865.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|229020116|ref|ZP_04176895.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|229026344|ref|ZP_04182702.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|229175579|ref|ZP_04303089.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|218540595|gb|ACK92989.1| cold shock protein CspD [Bacillus cereus G9842]
gi|228607975|gb|EEK65287.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|228734944|gb|EEL85581.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|228741182|gb|EEL91401.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|228778247|gb|EEM26517.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|228784828|gb|EEM32846.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228791707|gb|EEM39300.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228817713|gb|EEM63795.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228848983|gb|EEM93826.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|228856339|gb|EEN00868.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|326942646|gb|AEA18542.1| cold shock protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|319781907|ref|YP_004141383.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317167795|gb|ADV11333.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 70
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFITP+ DVF+H SAV ++GL L +GQ V++D +
Sbjct: 1 MPQTGTVKFFNHAKGFGFITPDD---GAKDVFVHISAVQASGLPGLEDGQKVSFDTEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 RGKGPKAVNLSV 69
>gi|229100140|ref|ZP_04231042.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29]
gi|229106964|ref|ZP_04237064.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28]
gi|229176343|ref|ZP_04303799.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3]
gi|228607130|gb|EEK64496.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3]
gi|228676519|gb|EEL31265.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28]
gi|228683275|gb|EEL37251.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKG+GFI + G+DVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MEQGKVKWFNADKGFGFIER----QGGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|167768567|ref|ZP_02440620.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1]
gi|317498676|ref|ZP_07956968.1| cold-shock' DNA-binding domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167710091|gb|EDS20670.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1]
gi|291560528|emb|CBL39328.1| cold-shock DNA-binding protein family [butyrate-producing
bacterium SSC/2]
gi|316894018|gb|EFV16208.1| cold-shock' DNA-binding domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI+ E SGDDVF+H SA+ G L EGQ V+++ +
Sbjct: 1 MSNGTVKWFNAEKGYGFISQE----SGDDVFVHFSAIQGKGFKTLEEGQSVSFEIEEGPR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 GK--QASNVTKL 66
>gi|117620914|ref|YP_857368.1| hypothetical protein AHA_2864 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|145298472|ref|YP_001141313.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
A449]
gi|117562321|gb|ABK39269.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|142851244|gb|ABO89565.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI E G DVF+H SA++ G L EGQ V + Q
Sbjct: 4 MITGTVKFFNETKGFGFIQQEN----GPDVFVHFSAISGNGFRTLAEGQRVQFSVTQGQK 59
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 60 G--PQAENVTAL 69
>gi|327440557|dbj|BAK16922.1| cold shock protein [Solibacillus silvestris StLB046]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF H SA+ G +L EGQ V ++
Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GGNDVFAHFSAIQGEGFKSLDEGQKVEFEIEDGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNIVKL 66
>gi|229076838|ref|ZP_04209743.1| Cold shock protein 2 [Bacillus cereus Rock4-18]
gi|228706282|gb|EEL58550.1| Cold shock protein 2 [Bacillus cereus Rock4-18]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKG+GFI G DVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MEQGKVKWFNADKGFGFIERAD----GADVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|182434255|ref|YP_001821974.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239946053|ref|ZP_04697990.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|239992524|ref|ZP_04713188.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
gi|291449502|ref|ZP_06588892.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998]
gi|326774768|ref|ZP_08234033.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178462771|dbj|BAG17291.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|291352449|gb|EFE79353.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998]
gi|326655101|gb|EGE39947.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + S G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINSTGFRELQEGQAVTFDITQGQK 57
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 58 G--PQAENIT 65
>gi|163791309|ref|ZP_02185723.1| cold shock protein [Carnobacterium sp. AT7]
gi|159873450|gb|EDP67540.1| cold shock protein [Carnobacterium sp. AT7]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDD+F+H SA+ G +L EGQ V ++ V+ +
Sbjct: 1 MEKGTVKWFNAEKGFGFIEVE----GGDDIFVHFSAITGDGFKSLEEGQAVEFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--AQAANVVKL 66
>gi|120555467|ref|YP_959818.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120325316|gb|ABM19631.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8]
Length = 179
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + SGD++F+H A+ G L +GQLV ++ V+ D
Sbjct: 113 EEGTVKWFNVKKGFGFIVRD----SGDEIFVHFRAIRGRGRRVLRQGQLVRFNVVEADKG 168
Query: 63 GKYSAENLKLVPK 75
A+N+ ++
Sbjct: 169 --LQADNVSILSD 179
>gi|297563398|ref|YP_003682372.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847846|gb|ADH69866.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + + G L EGQ V +D V
Sbjct: 1 MATGTVKWFNGEKGFGFIEQDG---GGPDVFAHYSNIQATGYRELAEGQAVQFDAVAGAK 57
Query: 62 NGKYSAENLKLV 73
AEN+ LV
Sbjct: 58 G--PQAENITLV 67
>gi|254461497|ref|ZP_05074913.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium HTCC2083]
gi|206678086|gb|EDZ42573.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
bacterium HTCC2083]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56
Query: 62 NGKYSAENLKL 72
+G+ +A N+ L
Sbjct: 57 DGREAAINIAL 67
>gi|119775193|ref|YP_927933.1| cold-shock DNA-binding domain-containing protein [Shewanella
amazonensis SB2B]
gi|119767693|gb|ABM00264.1| cold-shock DNA-binding protein family [Shewanella amazonensis
SB2B]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ E G+DVF H S + G L GQ V ++ Q
Sbjct: 1 MASGTVKWFNNAKGFGFICPD---EGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|300173985|ref|YP_003773151.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
gi|299888364|emb|CBL92332.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGF+T E G+DVF H SA+ G L EGQ V ++ +D
Sbjct: 1 MEKGTVKWFNGEKGYGFVTREN----GEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANISKL 66
>gi|29827434|ref|NP_822068.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29604533|dbj|BAC68603.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|91784878|ref|YP_560084.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|296160038|ref|ZP_06842858.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|91688832|gb|ABE32032.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|295889784|gb|EFG69582.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + + G +L E Q V++D
Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRADGFKSLKENQRVSFDVKAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQPL 67
>gi|16974801|pdb|1HZ9|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
gi|16974802|pdb|1HZ9|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|295688372|ref|YP_003592065.1| cold-shock DNA-binding domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295430275|gb|ADG09447.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
21756]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D+F+H SAV AGL L EGQ ++++ +
Sbjct: 1 MATGTVKWFNSAKGFGFIQPDN---GGQDIFVHISAVERAGLNGLNEGQKLSFEPEVDRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA L+ V
Sbjct: 58 SGKTSAGQLQAV 69
>gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
gi|262083934|gb|ACY19902.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ E DDVF+H S + +G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPD---EGSDDVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATGVRAV 67
>gi|170736784|ref|YP_001778044.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169818972|gb|ACA93554.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYETKHGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQASNI 64
>gi|71909004|ref|YP_286591.1| cold-shock DNA-binding protein family protein [Dechloromonas
aromatica RCB]
gi|71848625|gb|AAZ48121.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
RCB]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P +E G+D+F H SA+ G L E Q VT+D V
Sbjct: 1 MANGTVKWFNDSKGFGFISP---SEGGEDLFAHFSAIQGNGFKTLAENQKVTFDVVNGPK 57
Query: 62 NGKYSAENLKLVP 74
A N++
Sbjct: 58 GK--QAANIRPAE 68
>gi|310815352|ref|YP_003963316.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
gi|308754087|gb|ADO42016.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G DVF+H SAV +GL L + Q V +D ++
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GSKDVFVHISAVQRSGLEGLKDNQKVRFDI-ESSR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL +
Sbjct: 57 DGRESAVNLSV 67
>gi|299534886|ref|ZP_07048215.1| cold shock protein [Lysinibacillus fusiformis ZC1]
gi|298729731|gb|EFI70277.1| cold shock protein [Lysinibacillus fusiformis ZC1]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V + +
Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTVEEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANIVKL 66
>gi|260777147|ref|ZP_05886041.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450]
gi|260606813|gb|EEX33087.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSAITGDGFRTLVEGQKVEFTVSQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+KLV
Sbjct: 61 -PQAENIKLV 69
>gi|254487779|ref|ZP_05100984.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
gi|214044648|gb|EEB85286.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G G D+F+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESAGNIAL 67
>gi|149179855|ref|ZP_01858360.1| cold shock protein [Bacillus sp. SG-1]
gi|148852047|gb|EDL66192.1| cold shock protein [Bacillus sp. SG-1]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ +
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAITGEGFKSLDEGQRVEFEVVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|312115752|ref|YP_004013348.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311220881|gb|ADP72249.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KWYN KGYGFI P+ G DVF+H SA+ AGL L EGQ V+++ +
Sbjct: 1 MNMGVVKWYNSQKGYGFIQPDD---GGKDVFVHVSALERAGLRGLVEGQKVSFEIQTDRR 57
Query: 62 NGKYSAENLKL 72
K SA NL++
Sbjct: 58 TDKTSAGNLQV 68
>gi|108801761|ref|YP_641958.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
MCS]
gi|118473705|ref|YP_890379.1| hypothetical protein MSMEG_6159 [Mycobacterium smegmatis str. MC2
155]
gi|119870912|ref|YP_940864.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
KMS]
gi|126437748|ref|YP_001073439.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
JLS]
gi|302595677|sp|A0R5E1|CSPA_MYCS2 RecName: Full=Probable cold shock protein A
gi|9587215|gb|AAF89211.1|AF281675_1 cold-shock protein CspA [Mycobacterium smegmatis]
gi|108772180|gb|ABG10902.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
gi|118174992|gb|ABK75888.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
gi|119697001|gb|ABL94074.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
gi|126237548|gb|ABO00949.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
Length = 67
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + +G L E Q V ++ Q+
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRTI 67
>gi|27378265|ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27351412|dbj|BAC48419.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF+H SAV AGL L EGQ V ++ +
Sbjct: 1 MPTGTVKWFNGQKGFGFIQPDD---GGNDVFVHVSAVERAGLSGLAEGQKVNFEAKTDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKVSAENLSL 68
>gi|13472380|ref|NP_103947.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|260467122|ref|ZP_05813301.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|14023126|dbj|BAB49733.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
gi|259029134|gb|EEW30431.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 70
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFITP+ DVF+H SAV ++GL L +GQ VT+D +
Sbjct: 1 MPQTGTVKFFNHAKGFGFITPDD---GAKDVFVHISAVQASGLPGLEDGQKVTFDTEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 RGKGPKAVNLSV 69
>gi|24374170|ref|NP_718213.1| stress response protein CspD [Shewanella oneidensis MR-1]
gi|113969986|ref|YP_733779.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-4]
gi|114047221|ref|YP_737771.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-7]
gi|117920198|ref|YP_869390.1| cold-shock DNA-binding protein family protein [Shewanella sp.
ANA-3]
gi|146293325|ref|YP_001183749.1| cold-shock DNA-binding domain-containing protein [Shewanella
putrefaciens CN-32]
gi|24348677|gb|AAN55657.1|AE015704_8 stress response protein CspD [Shewanella oneidensis MR-1]
gi|113884670|gb|ABI38722.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
gi|113888663|gb|ABI42714.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
gi|117612530|gb|ABK47984.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
gi|145565015|gb|ABP75950.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
CN-32]
gi|319426625|gb|ADV54699.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
200]
Length = 68
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ Q
Sbjct: 1 MASGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|59712374|ref|YP_205150.1| DNA replication inhibitor [Vibrio fischeri ES114]
gi|197334669|ref|YP_002156589.1| cold shock domain protein CspD [Vibrio fischeri MJ11]
gi|59480475|gb|AAW86262.1| DNA replication inhibitor [Vibrio fischeri ES114]
gi|197316159|gb|ACH65606.1| cold shock domain protein CspD [Vibrio fischeri MJ11]
Length = 73
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ VTY+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIEMEGYRTLKAGQAVTYEIHEGPK 57
Query: 62 NGKYSAENLKLVP 74
+ A +KL+
Sbjct: 58 G--FHASEIKLLE 68
>gi|309701157|emb|CBJ00457.1| cold shock-like protein CspD [Escherichia coli ETEC H10407]
gi|323937987|gb|EGB34249.1| cold shock domain-containing protein CspD [Escherichia coli
E1520]
Length = 74
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 58 GN--HASVIVPVEVEA 71
>gi|228993599|ref|ZP_04153507.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
gi|228999635|ref|ZP_04159212.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|229163862|ref|ZP_04291803.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|228619604|gb|EEK76489.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|228760161|gb|EEM09130.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|228766190|gb|EEM14836.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
Length = 66
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|17987793|ref|NP_540427.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
gi|62289409|ref|YP_221202.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82699335|ref|YP_413909.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
biovar Abortus 2308]
gi|189023660|ref|YP_001934428.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
gi|225626929|ref|ZP_03784968.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|225851957|ref|YP_002732190.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
ATCC 23457]
gi|237814894|ref|ZP_04593892.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|254688721|ref|ZP_05151975.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
bv. 6 str. 870]
gi|254693204|ref|ZP_05155032.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
bv. 3 str. Tulya]
gi|254696849|ref|ZP_05158677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|254701228|ref|ZP_05163056.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 5
str. 513]
gi|254707848|ref|ZP_05169676.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
pinnipedialis M163/99/10]
gi|254709571|ref|ZP_05171382.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
pinnipedialis B2/94]
gi|254713013|ref|ZP_05174824.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
M644/93/1]
gi|254716633|ref|ZP_05178444.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
M13/05/1]
gi|254718601|ref|ZP_05180412.1| ATP/GTP-binding site motif A, P-loop protein [Brucella sp. 83/13]
gi|254729754|ref|ZP_05188332.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
bv. 4 str. 292]
gi|256031063|ref|ZP_05444677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
pinnipedialis M292/94/1]
gi|256044140|ref|ZP_05447047.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
bv. 1 str. Rev.1]
gi|256060557|ref|ZP_05450725.1| ATP/GTP-binding site motif A, P-loop protein [Brucella neotomae
5K33]
gi|256112943|ref|ZP_05453851.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
bv. 3 str. Ether]
gi|256159127|ref|ZP_05456948.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
M490/95/1]
gi|256254466|ref|ZP_05460002.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
B1/94]
gi|256256968|ref|ZP_05462504.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
bv. 9 str. C68]
gi|256264533|ref|ZP_05467065.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
gi|256368878|ref|YP_003106384.1| cold shock protein CspA [Brucella microti CCM 4915]
gi|260168194|ref|ZP_05755005.1| cold shock protein CspA [Brucella sp. F5/99]
gi|260545840|ref|ZP_05821581.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260563497|ref|ZP_05833983.1| ATP/GTP-binding site-containing protein A [Brucella melitensis
bv. 1 str. 16M]
gi|260754199|ref|ZP_05866547.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
gi|260757419|ref|ZP_05869767.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
gi|260761244|ref|ZP_05873587.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260883224|ref|ZP_05894838.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
gi|261213446|ref|ZP_05927727.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
gi|261218434|ref|ZP_05932715.1| predicted protein [Brucella ceti M13/05/1]
gi|261221638|ref|ZP_05935919.1| cold shock protein cspA [Brucella ceti B1/94]
gi|261315336|ref|ZP_05954533.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
gi|261317099|ref|ZP_05956296.1| predicted protein [Brucella pinnipedialis B2/94]
gi|261320717|ref|ZP_05959914.1| cold shock protein cspA [Brucella ceti M644/93/1]
gi|261324552|ref|ZP_05963749.1| predicted protein [Brucella neotomae 5K33]
gi|261751767|ref|ZP_05995476.1| predicted protein [Brucella suis bv. 5 str. 513]
gi|261757654|ref|ZP_06001363.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
gi|265983577|ref|ZP_06096312.1| cold shock protein cspA [Brucella sp. 83/13]
gi|265988135|ref|ZP_06100692.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
gi|265990551|ref|ZP_06103108.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
gi|265994381|ref|ZP_06106938.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
gi|265997600|ref|ZP_06110157.1| cold shock protein cspA [Brucella ceti M490/95/1]
gi|294851801|ref|ZP_06792474.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|297247821|ref|ZP_06931539.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
bv. 5 str. B3196]
gi|306839881|ref|ZP_07472679.1| cold shock protein CSPA [Brucella sp. NF 2653]
gi|306842293|ref|ZP_07474955.1| cold shock protein CSPA [Brucella sp. BO2]
gi|306845051|ref|ZP_07477632.1| cold shock protein CSPA [Brucella sp. BO1]
gi|17983518|gb|AAL52691.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
gi|62195541|gb|AAX73841.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82615436|emb|CAJ10405.1| ATP/GTP-binding site motif A (P-loop):Cold-shock DNA-binding
domain [Brucella melitensis biovar Abortus 2308]
gi|189019232|gb|ACD71954.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
gi|225618586|gb|EEH15629.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|225640322|gb|ACO00236.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
ATCC 23457]
gi|237789731|gb|EEP63941.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|255999036|gb|ACU47435.1| cold shock protein CspA [Brucella microti CCM 4915]
gi|260097247|gb|EEW81122.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260153513|gb|EEW88605.1| ATP/GTP-binding site-containing protein A [Brucella melitensis
bv. 1 str. 16M]
gi|260667737|gb|EEX54677.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
gi|260671676|gb|EEX58497.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260674307|gb|EEX61128.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
gi|260872752|gb|EEX79821.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
gi|260915053|gb|EEX81914.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
gi|260920222|gb|EEX86875.1| cold shock protein cspA [Brucella ceti B1/94]
gi|260923523|gb|EEX90091.1| predicted protein [Brucella ceti M13/05/1]
gi|261293407|gb|EEX96903.1| cold shock protein cspA [Brucella ceti M644/93/1]
gi|261296322|gb|EEX99818.1| predicted protein [Brucella pinnipedialis B2/94]
gi|261300532|gb|EEY04029.1| predicted protein [Brucella neotomae 5K33]
gi|261304362|gb|EEY07859.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
gi|261737638|gb|EEY25634.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
gi|261741520|gb|EEY29446.1| predicted protein [Brucella suis bv. 5 str. 513]
gi|262552068|gb|EEZ08058.1| cold shock protein cspA [Brucella ceti M490/95/1]
gi|262765494|gb|EEZ11283.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
gi|263001335|gb|EEZ13910.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
gi|263094866|gb|EEZ18604.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
gi|264660332|gb|EEZ30593.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
gi|264662169|gb|EEZ32430.1| cold shock protein cspA [Brucella sp. 83/13]
gi|294820390|gb|EFG37389.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|297174990|gb|EFH34337.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
bv. 5 str. B3196]
gi|306274683|gb|EFM56472.1| cold shock protein CSPA [Brucella sp. BO1]
gi|306287601|gb|EFM59052.1| cold shock protein CSPA [Brucella sp. BO2]
gi|306405067|gb|EFM61348.1| cold shock protein CSPA [Brucella sp. NF 2653]
gi|326408455|gb|ADZ65520.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28]
gi|326538172|gb|ADZ86387.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
M5-90]
Length = 69
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P+ DVF+H SAV AGL +L EGQ V Y+ V +
Sbjct: 1 MANGTVKFFNSTKGFGFIQPDD---GSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKSAAANLE 67
>gi|115474635|ref|NP_001060914.1| Os08g0129200 [Oryza sativa Japonica Group]
gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group]
gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group]
gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group]
gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 197
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GFITP+ G+D+F+H+S++ S G +L +G +V + + +G
Sbjct: 7 KGTVKWFDATKGFGFITPDD---GGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAVDVT 70
>gi|325261145|ref|ZP_08127883.1| conserved domain protein [Clostridium sp. D5]
gi|324032599|gb|EGB93876.1| conserved domain protein [Clostridium sp. D5]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFIT + +G+DVF+H S +AS G +L EGQ V++D + +
Sbjct: 1 MNNGTVKWFNAQKGFGFITND---ANGEDVFVHFSGIASDGYKSLEEGQKVSFDITEGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--PQAVNV 64
>gi|15966083|ref|NP_386436.1| putative cold shock transcription regulator protein
[Sinorhizobium meliloti 1021]
gi|150397438|ref|YP_001327905.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|307305637|ref|ZP_07585384.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307317640|ref|ZP_07597079.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|15075353|emb|CAC46909.1| Putative cold shock transcription regulator [Sinorhizobium
meliloti 1021]
gi|150028953|gb|ABR61070.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|306896798|gb|EFN27545.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306902340|gb|EFN32936.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 71
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI PE G D+F+H SAV ++GL LTE Q V++D +
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPEN---GGADIFVHISAVQASGLSGLTENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKLV 73
A NL++V
Sbjct: 58 RGKGPKAVNLQIV 70
>gi|332798799|ref|YP_004460298.1| cold-shock DNA-binding domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696534|gb|AEE90991.1| cold-shock DNA-binding domain protein [Tepidanaerobacter sp. Re1]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E DVF+H SA+ G L EG V +D V+
Sbjct: 2 QGKVKWFNQEKGYGFIEVE----GDKDVFVHYSAIQQEGFKTLKEGDSVEFDVVEGQKG- 56
Query: 64 KYSAENLKLV 73
AEN+ LV
Sbjct: 57 -PQAENVTLV 65
>gi|254418771|ref|ZP_05032495.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
gi|196184948|gb|EDX79924.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
Length = 70
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWYNP KGYGFI P+ G DVF+H SAV ++ + +L EGQ ++Y+ ++
Sbjct: 1 MATGTVKWYNPTKGYGFIAPDD---GGKDVFVHASAVETSSVGSLNEGQKISYEIERDSR 57
Query: 62 NGKYSAENLKLVP 74
+GK SA L
Sbjct: 58 SGKESAGRLTAAE 70
>gi|167566047|ref|ZP_02358963.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
EO147]
gi|167573125|ref|ZP_02365999.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
C6786]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ GDD+F H S + G L E Q V+++ +
Sbjct: 1 MDTGTVKWFNDSKGFGFISPDS---GGDDLFAHFSEIRGEGFKTLAENQKVSFETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKAL 67
>gi|162149571|ref|YP_001604032.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209544805|ref|YP_002277034.1| cold-shock DNA-binding domain-containing protein
[Gluconacetobacter diazotrophicus PAl 5]
gi|148530010|gb|ABQ82211.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5]
gi|161788148|emb|CAP57753.1| putative cold shock protein [Gluconacetobacter diazotrophicus PAl
5]
gi|209532482|gb|ACI52419.1| cold-shock DNA-binding domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H SAV AGL L EGQ ++Y+ +
Sbjct: 1 MATGTVKWFNSQKGFGFIQPND---GSSDVFVHISAVERAGLRGLNEGQTISYEL-ETGR 56
Query: 62 NGKYSAENLK 71
N K SA NLK
Sbjct: 57 NNKTSAVNLK 66
>gi|114776511|ref|ZP_01451556.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1]
gi|114553341|gb|EAU55739.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ + GDDVF+H S++ G +L EGQLV +D
Sbjct: 1 MATGTVKWFNDTKGFGFISQDD---GGDDVFVHFSSIQGDGFKSLAEGQLVEFDVENGAK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--PQASNV 64
>gi|83589095|ref|YP_429104.1| cold-shock DNA-binding protein family protein [Moorella
thermoacetica ATCC 39073]
gi|83572009|gb|ABC18561.1| cold-shock DNA-binding protein family [Moorella thermoacetica
ATCC 39073]
Length = 65
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+NP+KGYGFI E G DVF+H SA+ G L EGQ V +D V+
Sbjct: 2 QGKVKWFNPEKGYGFIERED----GKDVFVHFSAIQEEGFKTLAEGQEVEFDIVEGPRG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -PQAANV 62
>gi|34499122|ref|NP_903337.1| cold shock transcription regulator protein [Chromobacterium
violaceum ATCC 12472]
gi|34104973|gb|AAQ61329.1| cold shock transcription regulator protein [Chromobacterium
violaceum ATCC 12472]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ V
Sbjct: 1 MAFGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEVVSGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QASNIQ 65
>gi|320323059|gb|EFW79148.1| cold-shock protein [Pseudomonas syringae pv. glycinea str. B076]
Length = 120
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 53 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 107
Query: 64 KYSAENL 70
AE++
Sbjct: 108 -LQAEDV 113
>gi|294102753|ref|YP_003554611.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
gi|293617733|gb|ADE57887.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
DSM 12261]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT + G DVF+H S++ G L EGQ VT++
Sbjct: 1 MSQGTVKWFNATKGYGFITSD----EGKDVFVHFSSIQGDGFKTLDEGQRVTFEVTAGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 GD--QAANVVKL 66
>gi|239618424|ref|YP_002941746.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
gi|239507255|gb|ACR80742.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V ++ +
Sbjct: 2 TGTVKWFNSSKGYGFITKD----EGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKG- 56
Query: 64 KYSAENLKLV 73
A N+K +
Sbjct: 57 -PQAINVKPI 65
>gi|125560025|gb|EAZ05473.1| hypothetical protein OsI_27689 [Oryza sativa Indica Group]
Length = 193
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GFITP+ G+D+F+H+S++ S G +L +G +V + + +G
Sbjct: 7 KGTVKWFDATKGFGFITPDD---GGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAVDVT 70
>gi|94314090|ref|YP_587299.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
metallidurans CH34]
gi|93357942|gb|ABF12030.1| cold-shock DNA-binding domain protein [Cupriavidus metallidurans
CH34]
Length = 126
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S V G +L EGQ V Y
Sbjct: 60 METGTVKWFNDSKGFGFITPD---AGGDDLFAHFSEVQGNGFKSLQEGQKVRYVAGVGQK 116
Query: 62 NGKYSAENLKLV 73
+A ++ +
Sbjct: 117 G--PAATKIEPI 126
>gi|16974803|pdb|1HZA|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
gi|16974804|pdb|1HZA|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|332685716|ref|YP_004455490.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
gi|332369725|dbj|BAK20681.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+ E G DVF+H SA+ G L E Q VT+D +++
Sbjct: 1 MEHGTVKWFNAEKGFGFISRED----GSDVFVHFSAIQGDGFKTLEEDQPVTFDVEESER 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAVNVQK 65
>gi|302544493|ref|ZP_07296835.1| cold-shock domain family protein [Streptomyces hygroscopicus ATCC
53653]
gi|302462111|gb|EFL25204.1| cold-shock domain family protein [Streptomyces himastatinicus
ATCC 53653]
Length = 127
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + G+ +L GQ V + V +
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PEGVDSLKPGQRVEFGVVAGNR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+ + +
Sbjct: 56 GD--QALSVTLLDPAPS 70
>gi|330722048|gb|EGG99970.1| Cold shock protein CspA [gamma proteobacterium IMCC2047]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI G DVF+H A+ G L +GQ V Y V++
Sbjct: 4 RATGTVKWFNNAKGYGFIE----HHDGQDVFVHYRAIRGEGYRKLNDGQEVEYSIVESQK 59
Query: 62 NGKYSAENLKLV 73
AE++ V
Sbjct: 60 G--LQAEDVTPV 69
>gi|302535935|ref|ZP_07288277.1| cold shock protein [Streptomyces sp. C]
gi|302444830|gb|EFL16646.1| cold shock protein [Streptomyces sp. C]
Length = 127
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVDALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVTVLDPAPS 70
>gi|300021896|ref|YP_003754507.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523717|gb|ADJ22186.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE E G+DVF+H SAV AGL +L EGQ + ++ +
Sbjct: 1 MSNGTVKWFNGQKGYGFIQPE---EGGNDVFVHISAVERAGLQSLREGQKIYFE-TERGR 56
Query: 62 NGKYSAENLKLV 73
NGK +A NL+ +
Sbjct: 57 NGKIAAVNLRPL 68
>gi|167034611|ref|YP_001669842.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida GB-1]
gi|166861099|gb|ABY99506.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
Length = 84
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ VT++ +Q
Sbjct: 1 MASGKVKWFNNAKGYGFINEDG---GTEDLFAHYSAIQMDGYKTLKAGQAVTFNIIQGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A +K + S++
Sbjct: 58 G--LHAVEIKGINVSAS 72
>gi|37725747|gb|AAO32342.1| cold shock protein 2 [Streptomyces sp. AA8321]
Length = 65
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q
Sbjct: 1 MACGTVKWLNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVTFDVTQGPK 57
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 58 G--PQAENIT 65
>gi|29831319|ref|NP_825953.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|307324568|ref|ZP_07603775.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|29608434|dbj|BAC72488.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
gi|306889812|gb|EFN20791.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|186477475|ref|YP_001858945.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184193934|gb|ACC71899.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + G L E Q VTYD
Sbjct: 1 METGTVKWFNDAKGFGFITPD---AGGEDLFAHFSEIRVEGFKTLQENQKVTYDVKTGPK 57
Query: 62 NGKYSAENLKL 72
A N+K
Sbjct: 58 GK--QAANIKP 66
>gi|92118260|ref|YP_577989.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91801154|gb|ABE63529.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H SAV AGL L EGQ V ++ +
Sbjct: 1 MTTGTVKWFNGQKGFGFIQPND---GGSDVFVHISAVERAGLTGLAEGQKVNFELKTDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKVSAENLSL 68
>gi|118470416|ref|YP_884970.1| hypothetical protein MSMEG_0559 [Mycobacterium smegmatis str. MC2
155]
gi|118171703|gb|ABK72599.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+G DVF+H S ++ +G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNGEKGFGFIAPDG---GAPDVFVHYSEISGSGFRSLEENQRVEFEITQGAK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQAVGVTAV 67
>gi|56419891|ref|YP_147209.1| cold shock protein [Geobacillus kaustophilus HTA426]
gi|138894876|ref|YP_001125329.1| major cold shock protein CspB [Geobacillus thermodenitrificans
NG80-2]
gi|196248552|ref|ZP_03147253.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16]
gi|261419562|ref|YP_003253244.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61]
gi|295402279|ref|ZP_06812235.1| cold-shock DNA-binding domain protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|297530466|ref|YP_003671741.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3]
gi|312111498|ref|YP_003989814.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1]
gi|319766378|ref|YP_004131879.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52]
gi|729217|sp|P41016|CSPB_BACCL RecName: Full=Cold shock protein CspB
gi|7546262|pdb|1C9O|A Chain A, Crystal Structure Analysis Of The Bacillus Caldolyticus
Cold Shock Protein Bc-Csp
gi|7546263|pdb|1C9O|B Chain B, Crystal Structure Analysis Of The Bacillus Caldolyticus
Cold Shock Protein Bc-Csp
gi|146386838|pdb|2HAX|A Chain A, Crystal Structure Of Bacillus Caldolyticus Cold Shock
Protein In Complex With Hexathymidine
gi|146386839|pdb|2HAX|B Chain B, Crystal Structure Of Bacillus Caldolyticus Cold Shock
Protein In Complex With Hexathymidine
gi|1333711|emb|CAA51790.1| major cold shock protein (CspB) [Bacillus caldolyticus]
gi|56379733|dbj|BAD75641.1| cold shock protein [Geobacillus kaustophilus HTA426]
gi|134266389|gb|ABO66584.1| Major cold shock protein CspB [Geobacillus thermodenitrificans
NG80-2]
gi|196212277|gb|EDY07035.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16]
gi|261376019|gb|ACX78762.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61]
gi|294975672|gb|EFG51294.1| cold-shock DNA-binding domain protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|297253718|gb|ADI27164.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3]
gi|311216599|gb|ADP75203.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1]
gi|317111244|gb|ADU93736.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52]
gi|740004|prf||2004289A cold shock protein
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|260576175|ref|ZP_05844168.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
gi|259021655|gb|EEW24958.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H SA+ AG+ L +GQ VT+D ++
Sbjct: 1 MANGTVKWFNATKGFGFIAPAN---GNKDVFVHVSAMERAGIRQLDDGQAVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAINLAL 67
>gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP DVF+H SA+ S G L EGQ V ++
Sbjct: 5 TGTVKWFNESKGFGFITPAD---GSKDVFVHFSAIQSEGFKTLAEGQKVEFEIQDGQKG- 60
Query: 64 KYSAENLK 71
SA N+
Sbjct: 61 -PSAANVT 67
>gi|89073826|ref|ZP_01160333.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|90581460|ref|ZP_01237254.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|89050361|gb|EAR55862.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|90437321|gb|EAS62518.1| putative Cold shock-like protein [Vibrio angustum S14]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 1 MSTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANVVAL 67
>gi|83951672|ref|ZP_00960404.1| cold shock family protein [Roseovarius nubinhibens ISM]
gi|83836678|gb|EAP75975.1| cold shock family protein [Roseovarius nubinhibens ISM]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q V Y+ Q+
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPDD---GGKDVFVHISAVERSGLTGLADEQKVGYEL-QDGR 56
Query: 62 NGKYSAENLKLV 73
+G+ A +L L+
Sbjct: 57 DGRQMASDLTLL 68
>gi|295107075|emb|CBL04618.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae
7-10-1-b]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP+KGYGFI+ G+D+F+H S + G L EGQ V +D
Sbjct: 1 MAEGTVKWFNPEKGYGFISQND----GEDLFVHFSEIKMDGFKTLDEGQAVQFDVTTGQ- 55
Query: 62 NGKYSAENLKL 72
NGK A N+
Sbjct: 56 NGKLQASNVTK 66
>gi|224369509|ref|YP_002603673.1| CspA [Desulfobacterium autotrophicum HRM2]
gi|223692226|gb|ACN15509.1| CspA [Desulfobacterium autotrophicum HRM2]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G+DVF+H S + ++G +L EG VT+D Q
Sbjct: 1 MANGTVKWFNDSKGFGFIEQEN----GEDVFVHHSGINASGFKSLNEGDKVTFDIEQGQK 56
Query: 62 NGKYSAENLKLV 73
+A N+ +V
Sbjct: 57 G--PAATNVTVV 66
>gi|197106095|ref|YP_002131472.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
gi|196479515|gb|ACG79043.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF+H SAV AG+ NL+EGQ V+++ ++
Sbjct: 1 MTIGTVKWFNGQKGFGFIQPDD---GGNDVFVHISAVERAGMSNLSEGQKVSFELQKDSR 57
Query: 62 NGKYSAENLK 71
+GK SAE L+
Sbjct: 58 SGKMSAEQLQ 67
>gi|91793188|ref|YP_562839.1| CspD, cold shock [Shewanella denitrificans OS217]
gi|91715190|gb|ABE55116.1| cold-shock DNA-binding protein family [Shewanella denitrificans
OS217]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + GDDVF H S + G L GQ V ++ Q
Sbjct: 1 MANGTVKWFNNAKGFGFICPD---QGGDDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57
Query: 62 NGKYSAENLK 71
SA + K
Sbjct: 58 GMHASAISAK 67
>gi|57866866|ref|YP_188550.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A]
gi|242242680|ref|ZP_04797125.1| cold shock protein CspA [Staphylococcus epidermidis W23144]
gi|57637524|gb|AAW54312.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A]
gi|242233816|gb|EES36128.1| cold shock protein CspA [Staphylococcus epidermidis W23144]
Length = 77
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 12 MKQGTVKWFNAEKGFGFIEVEGEN----DVFVHFSAINQEGYKSLEEGQSVEFEVVEGDR 67
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 68 G--PQAANVVKL 77
>gi|296115123|ref|ZP_06833764.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978224|gb|EFG84961.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ G DVF+H +AV +AGL L E Q V+YD
Sbjct: 1 MATGKVKWFNATKGFGFIMPDD---GGKDVFVHITAVQAAGLRGLDENQAVSYDITME-- 55
Query: 62 NGKYSAENLKLV 73
GK +A NLK +
Sbjct: 56 RGKAAASNLKPL 67
>gi|294636954|ref|ZP_06715278.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685]
gi|291089847|gb|EFE22408.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685]
Length = 73
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G GDD+F H +++ G L GQ V ++
Sbjct: 1 METGTVKWFNNAKGFGFICPAG---GGDDIFAHYTSIQMEGYRTLKAGQRVQFELHIGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A+ + +P
Sbjct: 58 GN--HADTIIPLPNEP 71
>gi|91777357|ref|YP_552565.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|296159608|ref|ZP_06842431.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
gi|91690017|gb|ABE33215.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
gi|158187225|gb|ABW22844.1| hypothetical protein [Burkholderia sp. NCIMB 10467]
gi|295890052|gb|EFG69847.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQGPK 57
Query: 62 NGKYSAENLKL 72
A N+K
Sbjct: 58 G--LQAANIKP 66
>gi|15889479|ref|NP_355160.1| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|325293560|ref|YP_004279424.1| cold shock protein [Agrobacterium sp. H13-3]
gi|15157349|gb|AAK87945.1| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|325061413|gb|ADY65104.1| cold shock protein [Agrobacterium sp. H13-3]
Length = 71
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI P+ G D+F+H SAV ++GL L+E Q V++D +
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPDN---GGADIFVHISAVQASGLSGLSENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKL 72
A NL++
Sbjct: 58 RGKGPKAVNLQI 69
>gi|310816002|ref|YP_003963966.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
vulgare Y25]
gi|308754737|gb|ADO42666.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
vulgare Y25]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVF+H S++ +G+ +L +GQ V++D +
Sbjct: 1 MANGTVKWFNATKGFGFIAPES---GSKDVFVHISSMQRSGISDLADGQKVSFDIEEG-R 56
Query: 62 NGKYSAENLKL 72
+G+ +A N+ L
Sbjct: 57 DGRENAINITL 67
>gi|220932483|ref|YP_002509391.1| putative cold-shock DNA-binding domain protein [Halothermothrix
orenii H 168]
gi|219993793|gb|ACL70396.1| putative cold-shock DNA-binding domain protein [Halothermothrix
orenii H 168]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M++ G +KW++P KGYGFI + GDDVF+H SA+ G L EGQ V ++ V+++
Sbjct: 1 MIYSGKVKWFDPKKGYGFIERD----EGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESE 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 RG--PQAANVVKL 67
>gi|254387116|ref|ZP_05002389.1| cold shock protein [Streptomyces sp. Mg1]
gi|194345934|gb|EDX26900.1| cold shock protein [Streptomyces sp. Mg1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G LTEGQ V++D Q
Sbjct: 1 MALGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELTEGQRVSFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|108799262|ref|YP_639459.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
MCS]
gi|119868378|ref|YP_938330.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
KMS]
gi|126434920|ref|YP_001070611.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
JLS]
gi|108769681|gb|ABG08403.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
gi|119694467|gb|ABL91540.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
gi|126234720|gb|ABN98120.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+G DDVF+H S + G +L E Q V ++ Q
Sbjct: 1 MTQGTVKWFNSEKGFGFIAPDG---GSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATSVTAI 67
>gi|254000444|ref|YP_003052507.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. SIP3-4]
gi|313202403|ref|YP_004041061.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. MP688]
gi|253987123|gb|ACT51980.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
gi|312441719|gb|ADQ85825.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ G D+F H SA+A G +L + V+++ +
Sbjct: 1 MATGIVKWFNDSKGFGFITPDD---GGSDLFAHYSAIADTGYKSLKDNDRVSFEVIDGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|163739594|ref|ZP_02147003.1| cold shock protein CspA-related protein, putative [Phaeobacter
gallaeciensis BS107]
gi|161387053|gb|EDQ11413.1| cold shock protein CspA-related protein, putative [Phaeobacter
gallaeciensis BS107]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF+H SA+ AGL L + Q VT+D +
Sbjct: 1 MANGTVKWFNSTKGFGFIAPEG---GSRDVFVHISALERAGLTTLNDDQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAANLAL 67
>gi|77463958|ref|YP_353462.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|126462801|ref|YP_001043915.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|146276900|ref|YP_001167059.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|332558830|ref|ZP_08413152.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
gi|77388376|gb|ABA79561.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
gi|126104465|gb|ABN77143.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17029]
gi|145555141|gb|ABP69754.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17025]
gi|332276542|gb|EGJ21857.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L++ Q + Y+ Q+
Sbjct: 1 MPTGTVKWFNSTKGFGFIAPDD---GGKDVFVHISAVERAGLKGLSDNQKIGYEL-QSGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +L+L+
Sbjct: 57 DGRSSAGDLRLL 68
>gi|312115790|ref|YP_004013386.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311220919|gb|ADP72287.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N +KGYGFI P+ DVF+H SAV AG+ + EGQ ++++ V++
Sbjct: 1 MNTGTVKFFNVNKGYGFIQPDS---GSADVFVHISAVERAGMRTIVEGQKLSFEIVRDAR 57
Query: 62 NGKYSAENLK 71
+GK SAENL+
Sbjct: 58 SGKSSAENLQ 67
>gi|238024869|ref|YP_002909101.1| Cold shock protein [Burkholderia glumae BGR1]
gi|237879534|gb|ACR31866.1| Cold shock protein [Burkholderia glumae BGR1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+P+ DD+F H S + G +L EGQ V+++
Sbjct: 1 MDTGIVKWFNDSKGFGFISPDN---GKDDLFAHFSEIRGDGFRSLAEGQRVSFETKVGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|190890873|ref|YP_001977415.1| cold shock protein [Rhizobium etli CIAT 652]
gi|218463533|ref|ZP_03503624.1| cold shock protein [Rhizobium etli Kim 5]
gi|218507653|ref|ZP_03505531.1| cold shock protein [Rhizobium etli Brasil 5]
gi|218514329|ref|ZP_03511169.1| cold shock protein [Rhizobium etli 8C-3]
gi|218663162|ref|ZP_03519092.1| cold shock protein [Rhizobium etli IE4771]
gi|218671488|ref|ZP_03521158.1| cold shock protein [Rhizobium etli GR56]
gi|190696152|gb|ACE90237.1| cold shock protein [Rhizobium etli CIAT 652]
gi|327190699|gb|EGE57781.1| cold shock protein [Rhizobium etli CNPAF512]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N KG+GFI P+ DVF+H SAV AG+ LTEGQ V YD V++
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDD---GSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKR 57
Query: 62 NGKYSAENLK 71
+GK +A+NL+
Sbjct: 58 SGKNAADNLQ 67
>gi|169627591|ref|YP_001701240.1| cold shock protein A (CspA) [Mycobacterium abscessus ATCC 19977]
gi|169239558|emb|CAM60586.1| Probable cold shock protein A (CspA) [Mycobacterium abscessus]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + G L E Q V ++ Q+
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGNGFRTLEENQKVEFEVGQSPK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATGVRAV 67
>gi|254248343|ref|ZP_04941663.1| Cold shock protein [Burkholderia cenocepacia PC184]
gi|124874844|gb|EAY64834.1| Cold shock protein [Burkholderia cenocepacia PC184]
Length = 83
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+++ +
Sbjct: 19 TGTVKWFNETKGFGFISPDN---GGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPKG- 74
Query: 64 KYSAENLKL 72
A N+
Sbjct: 75 -LQASNITP 82
>gi|1169112|sp|P42016|CSPB_BACST RecName: Full=Cold shock protein CspB; AltName: Full=Major cold
shock protein
gi|1129127|emb|CAA51792.1| major cold shock protein (CspB) [Geobacillus stearothermophilus]
gi|740006|prf||2004289C cold shock protein
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H +A+ G +L EGQ V+++ VQ +
Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKSLEEGQEVSFEIVQGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|319653292|ref|ZP_08007394.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
gi|317395213|gb|EFV75949.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V+++ V+
Sbjct: 1 MKNGKVKWFNAEKGFGFIEGED----GNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|294498464|ref|YP_003562164.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294500157|ref|YP_003563857.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295705519|ref|YP_003598594.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294348401|gb|ADE68730.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294350094|gb|ADE70423.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294803178|gb|ADF40244.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI E GDDVF+H S++ G +L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNADKGFGFIEIE----GGDDVFVHFSSIQGEGFKSLEEGQKVTFDIEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--AQAANVHKV 66
>gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|229494807|ref|ZP_04388563.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226183115|dbj|BAH31219.1| probable cold shock protein [Rhodococcus erythropolis PR4]
gi|229318303|gb|EEN84168.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPED---GSADVFVHYSEIQGNGFRTLEENQRVEFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATGVRAV 67
>gi|167583194|ref|ZP_02376068.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
TXDOH]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+G GDD+F H S + G L EGQ V+Y+
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDG---GGDDLFAHFSEIRGDGFKTLAEGQKVSYETKHGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQASNI 64
>gi|152969470|ref|YP_001334579.1| DNA replication inhibitor [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206580364|ref|YP_002239468.1| cold shock domain protein CspD [Klebsiella pneumoniae 342]
gi|238893942|ref|YP_002918676.1| cold shock-like protein [Klebsiella pneumoniae NTUH-K2044]
gi|262041018|ref|ZP_06014238.1| cold-shock protein CspD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936316|ref|YP_003440375.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|290510628|ref|ZP_06549998.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55]
gi|329998509|ref|ZP_08303131.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3]
gi|150954319|gb|ABR76349.1| DNA replication inhibitor, nucleic acid-binding domain
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|206569422|gb|ACI11198.1| cold shock domain protein CspD [Klebsiella pneumoniae 342]
gi|238546258|dbj|BAH62609.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259041634|gb|EEW42685.1| cold-shock protein CspD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288891025|gb|ADC59343.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|289777344|gb|EFD85342.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55]
gi|328538654|gb|EGF64751.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3]
Length = 73
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 58 GN--HASVIVPVEAET 71
>gi|157962355|ref|YP_001502389.1| cold-shock DNA-binding domain-containing protein [Shewanella
pealeana ATCC 700345]
gi|167623650|ref|YP_001673944.1| cold-shock DNA-binding domain-containing protein [Shewanella
halifaxensis HAW-EB4]
gi|212634693|ref|YP_002311218.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
gi|157847355|gb|ABV87854.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
700345]
gi|167353672|gb|ABZ76285.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
HAW-EB4]
gi|212556177|gb|ACJ28631.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF H S + G L GQ V+++
Sbjct: 1 MASGTVKWFNNAKGFGFICPD---AGGEDVFAHYSTIEMEGYRTLKAGQPVSFEVEAGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|167756812|ref|ZP_02428939.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402]
gi|237734529|ref|ZP_04565010.1| cold shock protein [Mollicutes bacterium D7]
gi|167702987|gb|EDS17566.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402]
gi|229382349|gb|EEO32440.1| cold shock protein [Coprobacillus sp. D7]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFIT + +G D+F+H SA+ +G +L EG V++D V++D
Sbjct: 1 MNTGTVKWFNSEKGFGFITKD----TGGDLFVHFSAIQGSGFKSLEEGAKVSFDIVESDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--EQAANVAAL 66
>gi|328883551|emb|CCA56790.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIAASGFRELQEGQKVSFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|289705593|ref|ZP_06501984.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
gi|289557674|gb|EFD50974.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI PE ++ DVF+H SA+ +G L E V ++
Sbjct: 1 MAVGTVKWFNAEKGYGFIAPEDNSA---DVFVHFSAIQGSGFKELQENDRVEFETQDGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANVTKL 67
>gi|256396570|ref|YP_003118134.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256362796|gb|ACU76293.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V+++ Q
Sbjct: 1 MTDGTVKWFNAEKGFGFIEQDG---GGADVFAHFSNIAADGYRELQEGQRVSFEVTQGQK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--PQAVNI 64
>gi|289209718|ref|YP_003461784.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
K90mix]
gi|288945349|gb|ADC73048.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
K90mix]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N KG+GFITP+ G DVF+H SA++ +G L EGQ V+++ +
Sbjct: 1 MNTGVVKWFNESKGFGFITPDD---GGKDVFVHFSAISGSGFKTLAEGQKVSFEIQETAK 57
Query: 62 NGKYSAENLKLV 73
+A + +
Sbjct: 58 G--LAAGEVTAL 67
>gi|329727663|gb|EGG64119.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 21172]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG +VF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGEN----NVFVHFSAINQDGYKSLEEGQAVEFEVVEGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|163800347|ref|ZP_02194248.1| cold shock DNA-binding domain protein [Vibrio sp. AND4]
gi|159175790|gb|EDP60584.1| cold shock DNA-binding domain protein [Vibrio sp. AND4]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V ++ Q
Sbjct: 5 TTGTVKWFNETKGFGFIQQEN----GPDVFAHFSAIQGDGFKTLAEGQKVEFEVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AE + ++
Sbjct: 61 --PQAEKITVL 69
>gi|91783230|ref|YP_558436.1| cold-shock DNA-binding protein family protein [Burkholderia
xenovorans LB400]
gi|91687184|gb|ABE30384.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
LB400]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S + G L E Q V+Y+ +
Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---AGGDDLFAHFSEIRGDGFKTLAENQKVSYETKRGPK 57
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 58 G--MQAANISP 66
>gi|90962451|ref|YP_536367.1| cold shock protein [Lactobacillus salivarius UCC118]
gi|227891500|ref|ZP_04009305.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
gi|301299206|ref|ZP_07205493.1| cold shock protein CspB [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|90821645|gb|ABE00284.1| Cold shock protein [Lactobacillus salivarius UCC118]
gi|227866647|gb|EEJ74068.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
gi|300853166|gb|EFK80763.1| cold shock protein CspB [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E GDDVF+H +A+ G L EGQ VT+D +D
Sbjct: 1 MEQGTVKWFNAEKGFGFITREN----GDDVFVHFTAIQGEGYKTLEEGQHVTFDVESSDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|49082304|gb|AAT50552.1| PA0456 [synthetic construct]
Length = 70
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFITPE SG DVF+H A+ G L EGQ V+++ VQ
Sbjct: 3 RQNGTVKWFNETKGYGFITPE----SGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQK 58
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 59 G--MQAERVQVI 68
>gi|94314735|ref|YP_587944.1| major cold shock protein [Cupriavidus metallidurans CH34]
gi|93358587|gb|ABF12675.1| major cold shock protein [Cupriavidus metallidurans CH34]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ GDD+F H S V + G +L E Q V+++
Sbjct: 1 MQTGIVKWFNDAKGFGFIKPD---AGGDDLFAHFSEVRADGFKSLQENQRVSFEVKNGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|328957137|ref|YP_004374523.1| cold shock protein CspA [Carnobacterium sp. 17-4]
gi|328673461|gb|AEB29507.1| cold shock protein CspA [Carnobacterium sp. 17-4]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ V+ +
Sbjct: 1 MEKGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGDGFKSLEEGQAVEFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--AQAANVVKL 66
>gi|291279814|ref|YP_003496649.1| cold shock protein [Deferribacter desulfuricans SSM1]
gi|290754516|dbj|BAI80893.1| cold shock protein [Deferribacter desulfuricans SSM1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KGYGFIT + G+DVF+H +A+ G +L EG V +D V+
Sbjct: 1 MSKTGTVKWFNDSKGYGFIT----SSDGNDVFVHFTAIKMDGFKSLKEGDQVQFDIVEGP 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--PQASNVVKI 67
>gi|302523728|ref|ZP_07276070.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302432623|gb|EFL04439.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+ G DVF+H S + G L E V ++ Q
Sbjct: 1 MTEGTVKWFNSEKGFGFITPDN---GGGDVFVHYSEIQGNGFRTLEENARVQFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ L+
Sbjct: 58 G--PQATSVSLI 67
>gi|169828200|ref|YP_001698358.1| major cold shock protein [Lysinibacillus sphaericus C3-41]
gi|168992688|gb|ACA40228.1| Major cold shock protein [Lysinibacillus sphaericus C3-41]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ + G L EGQ V + + +
Sbjct: 1 MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQTDGFKTLEEGQKVEFGVEEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVVKL 66
>gi|116511521|ref|YP_808737.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
subsp. cremoris SK11]
gi|125624635|ref|YP_001033118.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
MG1363]
gi|2370256|emb|CAA71254.1| cold shock protein [Lactococcus lactis]
gi|3850773|emb|CAA76695.1| cold shock protein B [Lactococcus lactis subsp. cremoris MG1363]
gi|116107175|gb|ABJ72315.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
cremoris SK11]
gi|124493443|emb|CAL98417.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071426|gb|ADJ60826.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NPDKG+GFIT E G DVF H S + ++G L EGQ VT+D
Sbjct: 1 MTKGTVKWFNPDKGFGFITSED----GQDVFAHFSQIQTSGFKTLDEGQKVTFDVEAGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAVNIEK 65
>gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197872|gb|EGD55059.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ DVF+H S + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPDD---GDADVFVHYSEIQGNGFRTLEEDQRVEFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQATGVHAL 67
>gi|288556391|ref|YP_003428326.1| cold-shock DNA-binding protein family protein [Bacillus
pseudofirmus OF4]
gi|288547551|gb|ADC51434.1| cold-shock DNA-binding protein family protein [Bacillus
pseudofirmus OF4]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MEQGTVKWFNAEKGFGFIEIE----GGDDVFVHFSAIQGEGFKSLDEGQKVTFETEQGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQAVNVNK 65
>gi|239832396|ref|ZP_04680725.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
gi|239824663|gb|EEQ96231.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
Length = 96
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N +KG+GFI P+ G D+F+H SAV ++GL L + Q V+Y+ +
Sbjct: 26 MAQTGQVKFFNTEKGFGFIKPDD---GGADIFVHISAVQASGLTGLADNQKVSYETEPDR 82
Query: 61 ANGKYSAENLKL 72
A N+ +
Sbjct: 83 RGKGPKAVNITV 94
>gi|218297043|ref|ZP_03497720.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
gi|218242598|gb|EED09135.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI E G DVF+H +A+ + G L EG+ V ++
Sbjct: 1 MKKGTVKWFNAEKGYGFIQQE----EGPDVFVHFTAIEADGFRTLNEGEHVEFEVEPGRG 56
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 57 GKGPQAKKVRRI 68
>gi|86356809|ref|YP_468701.1| cold shock protein [Rhizobium etli CFN 42]
gi|86280911|gb|ABC89974.1| cold shock protein [Rhizobium etli CFN 42]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N KG+GFI P+ DVF+H SAV AG+ LTEGQ V YD V++
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDD---GSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKNSADNLQ 67
>gi|238920383|ref|YP_002933898.1| cold shock domain protein CspD, [Edwardsiella ictaluri 93-146]
gi|238869952|gb|ACR69663.1| cold shock domain protein CspD, putative [Edwardsiella ictaluri
93-146]
Length = 73
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P GDD+F H +A+ G L GQ V +D
Sbjct: 1 METGTVKWFNNAKGFGFICPAS---GGDDIFAHYTAIQMEGYRTLKAGQQVQFDLHTGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
+ + ++ + ++
Sbjct: 58 GNHANTI-IPILSEPAS 73
>gi|221133721|ref|ZP_03560026.1| putative cold shock-like protein cspG [Glaciecola sp. HTCC2999]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKGYGFIT + G DVF+H A+ S G L EGQ V+++ +
Sbjct: 5 TGSVKWFNADKGYGFITQDN---GGKDVFVHFRAIQSEGYKTLPEGQKVSFEIEEGQKG- 60
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 61 -LQAANVNAI 69
>gi|114321823|ref|YP_743506.1| cold-shock DNA-binding protein family protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114228217|gb|ABI58016.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii
MLHE-1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG+GFITP G DVF+H SA+ +G +L EGQ V ++
Sbjct: 1 MITGTVKWFDDAKGFGFITPTD---GGKDVFVHHSAINGSGFKSLAEGQQVQFETQNTPK 57
Query: 62 NGKYSAENLKLV 73
+A N+ +
Sbjct: 58 G--LAAANVSAL 67
>gi|116627693|ref|YP_820312.1| cold shock protein [Streptococcus thermophilus LMD-9]
gi|116100970|gb|ABJ66116.1| cold-shock DNA-binding protein family [Streptococcus thermophilus
LMD-9]
gi|312278226|gb|ADQ62883.1| Cold shock-like protein cspE [Streptococcus thermophilus ND03]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT E G D+F H S++ S G +L E Q V +D
Sbjct: 1 MANGTVKWFNATKGFGFITSED----GQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAVNITK 65
>gi|332995286|gb|AEF05341.1| putative cold shock-like protein cspG [Alteromonas sp. SN2]
Length = 69
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKGYGF+T + G DVF+H A+ S G L EGQ V ++ +
Sbjct: 5 TGTVKWFNADKGYGFLTQDN---GGKDVFVHFRAIVSDGYKTLPEGQRVEFEVEEGQKG- 60
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 61 -LQAANVHAI 69
>gi|330992259|ref|ZP_08316207.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1]
gi|329760458|gb|EGG76954.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ D F+H SAV AG L EGQ VTYD +
Sbjct: 1 MAAGTVKWFNAQKGFGFIQPDD---GSADAFVHISAVEQAGQQTLNEGQAVTYDL-ERGR 56
Query: 62 NGKYSAENLKL 72
NGK SA NLK+
Sbjct: 57 NGKSSAVNLKI 67
>gi|296444335|ref|ZP_06886300.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296257982|gb|EFH05044.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 70
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ V +
Sbjct: 1 MQTGVVKWFNSQKGFGFIQPDS---GGADVFVHISAVERAGLRGLAEGQKISYETVIDKR 57
Query: 62 NGKYSAENLKL 72
+GK SA+ L++
Sbjct: 58 SGKSSADQLQV 68
>gi|257867783|ref|ZP_05647436.1| cold-shock protein [Enterococcus casseliflavus EC30]
gi|257874110|ref|ZP_05653763.1| cold-shock protein [Enterococcus casseliflavus EC10]
gi|257876671|ref|ZP_05656324.1| cold-shock protein [Enterococcus casseliflavus EC20]
gi|325571022|ref|ZP_08146594.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
gi|257801866|gb|EEV30769.1| cold-shock protein [Enterococcus casseliflavus EC30]
gi|257808274|gb|EEV37096.1| cold-shock protein [Enterococcus casseliflavus EC10]
gi|257810837|gb|EEV39657.1| cold-shock protein [Enterococcus casseliflavus EC20]
gi|325156107|gb|EGC68293.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFIT + GDDVF+H SA+ G +L EGQ V + V+
Sbjct: 1 MEHGKVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEGAR 56
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 57 G--PQAAEVTKV 66
>gi|238893691|ref|YP_002918425.1| cold shock protein CspE [Klebsiella pneumoniae NTUH-K2044]
gi|238546007|dbj|BAH62358.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 97
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 33 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 88
Query: 64 KYSAENL 70
SA N+
Sbjct: 89 -PSAANV 94
>gi|326510343|dbj|BAJ87388.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+PE DD+F+H+SA+ + G +L E +V +D + D +G
Sbjct: 6 KGTVKWFNVTKGFGFISPED---GSDDLFVHQSAIKADGYRSLNENDVVEFDVITGD-DG 61
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 62 RTKASDVT 69
>gi|282863823|ref|ZP_06272881.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|282561524|gb|EFB67068.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S + + G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQEG---GGADVFAHYSNILAQGFRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|239826758|ref|YP_002949382.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
gi|239807051|gb|ACS24116.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQHGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|229032524|ref|ZP_04188490.1| Cold shock protein cspB [Bacillus cereus AH1271]
gi|229099341|ref|ZP_04230272.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|229105500|ref|ZP_04236141.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|229118352|ref|ZP_04247708.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|228665182|gb|EEL20668.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|228677925|gb|EEL32161.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|228684159|gb|EEL38106.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|228728782|gb|EEL79792.1| Cold shock protein cspB [Bacillus cereus AH1271]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|126650361|ref|ZP_01722589.1| cold-shock domain family protein [Bacillus sp. B14905]
gi|126593011|gb|EAZ86993.1| cold-shock domain family protein [Bacillus sp. B14905]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D +
Sbjct: 1 MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLKEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 57 G--PQASNVR 64
>gi|33596617|ref|NP_884260.1| cold shock-like protein [Bordetella parapertussis 12822]
gi|33601232|ref|NP_888792.1| cold shock-like protein [Bordetella bronchiseptica RB50]
gi|33573318|emb|CAE37301.1| cold shock-like protein [Bordetella parapertussis]
gi|33575667|emb|CAE32745.1| cold shock-like protein [Bordetella bronchiseptica RB50]
Length = 81
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++
Sbjct: 15 METGVVKWFNAEKGYGFITPE---AGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPK 71
Query: 62 NGKYSAENLKLV 73
A ++++
Sbjct: 72 G--PQATKIQIL 81
>gi|260779178|ref|ZP_05888070.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450]
gi|260605342|gb|EEX31637.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450]
Length = 73
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF H S + G L GQ VT++ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDVFAHYSTIKMDGYRTLKAGQQVTFEVEEGPK 57
Query: 62 NGKYSAENLKLVPK 75
Y A ++ V
Sbjct: 58 G--YHASSVVPVEA 69
>gi|313906442|ref|ZP_07839778.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens
6]
gi|313468709|gb|EFR64075.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens
6]
Length = 66
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N DKGYGFIT E G DVF+H SA+ G +L EGQ V+Y+ V+
Sbjct: 1 MNKGTVKWFNADKGYGFITGED----GKDVFVHFSAIQGEGFKSLDEGQSVSYELVEGAK 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--MQAANVEK 65
>gi|145588771|ref|YP_001155368.1| cold-shock DNA-binding domain-containing protein
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047177|gb|ABP33804.1| cold-shock DNA-binding protein family [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 67
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITPE G+D+F H SA+ S G +L EGQ VT+D
Sbjct: 1 MANGIVKWFNDAKGFGFITPE---LGGEDLFAHFSAINSNGFKSLAEGQKVTFDITTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GKL--ASNIQPV 67
>gi|89056116|ref|YP_511567.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
CCS1]
gi|88865665|gb|ABD56542.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
Length = 68
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VTYD +
Sbjct: 1 MANGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADNQKVTYDL-EAGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA NLK V
Sbjct: 57 DGRESAVNLKAV 68
>gi|126739561|ref|ZP_01755253.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
gi|126719207|gb|EBA15917.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
Length = 68
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G DVF+H SAV +GL L + Q VT+D +
Sbjct: 1 MASGTVKWFNSTKGYGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAVNLAL 67
>gi|114328842|ref|YP_745999.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
gi|114317016|gb|ABI63076.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
Length = 67
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H +AV +AGL L EGQ VTY+
Sbjct: 1 MATGTVKWFNATKGFGFIMPQD---GGKDVFVHITAVQAAGLRGLDEGQKVTYEVAME-- 55
Query: 62 NGKYSAENLKL 72
GK +A NL++
Sbjct: 56 RGKAAATNLRV 66
>gi|126699928|ref|YP_001088825.1| cold shock protein [Clostridium difficile 630]
gi|254975893|ref|ZP_05272365.1| cold shock protein [Clostridium difficile QCD-66c26]
gi|255093279|ref|ZP_05322757.1| cold shock protein [Clostridium difficile CIP 107932]
gi|255101459|ref|ZP_05330436.1| cold shock protein [Clostridium difficile QCD-63q42]
gi|255307332|ref|ZP_05351503.1| cold shock protein [Clostridium difficile ATCC 43255]
gi|255315026|ref|ZP_05356609.1| cold shock protein [Clostridium difficile QCD-76w55]
gi|255517696|ref|ZP_05385372.1| cold shock protein [Clostridium difficile QCD-97b34]
gi|255650808|ref|ZP_05397710.1| cold shock protein [Clostridium difficile QCD-37x79]
gi|255656285|ref|ZP_05401694.1| cold shock protein [Clostridium difficile QCD-23m63]
gi|260683889|ref|YP_003215174.1| cold shock protein [Clostridium difficile CD196]
gi|260687549|ref|YP_003218683.1| cold shock protein [Clostridium difficile R20291]
gi|296450274|ref|ZP_06892035.1| cold shock protein CspA [Clostridium difficile NAP08]
gi|296878689|ref|ZP_06902694.1| cold shock protein CspA [Clostridium difficile NAP07]
gi|306520707|ref|ZP_07407054.1| cold shock protein [Clostridium difficile QCD-32g58]
gi|115251365|emb|CAJ69197.1| Cold shock protein D [Clostridium difficile]
gi|260210052|emb|CBA64132.1| cold shock protein [Clostridium difficile CD196]
gi|260213566|emb|CBE05331.1| cold shock protein [Clostridium difficile R20291]
gi|296261037|gb|EFH07871.1| cold shock protein CspA [Clostridium difficile NAP08]
gi|296430496|gb|EFH16338.1| cold shock protein CspA [Clostridium difficile NAP07]
Length = 66
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI+ E SGDDVF H SA+ ++G +L EGQ V++D V+
Sbjct: 1 MNNGIVKWFNNEKGFGFISME----SGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKGAR 56
Query: 62 NGKYSAENLKLV 73
AEN+ ++
Sbjct: 57 G--PQAENITIL 66
>gi|238026492|ref|YP_002910723.1| Cold-shock DNA-binding domain-containing protein [Burkholderia
glumae BGR1]
gi|237875686|gb|ACR28019.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1]
Length = 67
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMDGFKTLKENQRVSFDVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAL 67
>gi|229020404|ref|ZP_04177159.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273]
gi|229026633|ref|ZP_04182975.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272]
gi|228734666|gb|EEL85318.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272]
gi|228740883|gb|EEL91126.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273]
Length = 89
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V +
Sbjct: 23 MNMQGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 77
Query: 61 ANGKYSAENLKL 72
A G +A +KL
Sbjct: 78 ARGPQAANVVKL 89
>gi|13488430|ref|NP_109437.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14028184|dbj|BAB54776.1| cold shock protein [Mesorhizobium loti MAFF303099]
Length = 69
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + Y+ ++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDS---GGADAFVHISAVERAGMREIVEGQKIGYEMERDSK 57
Query: 62 NGKYSAENLKLV 73
+GK SA NL+ V
Sbjct: 58 SGKMSACNLQAV 69
>gi|260769456|ref|ZP_05878389.1| cold shock protein CspE [Vibrio furnissii CIP 102972]
gi|260614794|gb|EEX39980.1| cold shock protein CspE [Vibrio furnissii CIP 102972]
gi|315181988|gb|ADT88901.1| cold shock DNA-binding domain-containing protein [Vibrio
furnissii NCTC 11218]
Length = 69
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIKQEN----GPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG- 60
Query: 64 KYSAENLKLV 73
AE++KL+
Sbjct: 61 -PQAESIKLL 69
>gi|221639814|ref|YP_002526076.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|221160595|gb|ACM01575.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
Length = 83
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L++ Q + Y+ Q+
Sbjct: 16 MPTGTVKWFNSTKGFGFIAPDD---GGKDVFVHISAVERAGLKGLSDNQKIGYEL-QSGR 71
Query: 62 NGKYSAENLKLV 73
+G+ SA +L+L+
Sbjct: 72 DGRSSAGDLRLL 83
>gi|167747330|ref|ZP_02419457.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662]
gi|167653308|gb|EDR97437.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662]
Length = 91
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFIT E +G+DVF+H S +A+ G +L +GQ VT++ Q +
Sbjct: 25 MNNGTVKWFNSTKGFGFITNES---TGEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGNR 81
Query: 62 NGKYSAENL 70
A N+
Sbjct: 82 G--LQAVNV 88
>gi|56698445|ref|YP_168819.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3]
gi|56680182|gb|AAV96848.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3]
Length = 68
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE + DVF+H SA+ +G+ L +GQ VT+D ++
Sbjct: 1 MANGTVKWFNSQKGFGFIAPE---QGSKDVFVHISALERSGIQKLDDGQAVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAINLAL 67
>gi|24347442|gb|AAN54703.1|AE015611_1 cold shock domain family protein [Shewanella oneidensis MR-1]
Length = 81
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q
Sbjct: 16 TTGVVKWFNEDKGFGFISPDN---GGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQKG 72
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 73 --PQAANVVVL 81
>gi|311030382|ref|ZP_07708472.1| cold shock protein [Bacillus sp. m3-13]
Length = 66
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H SA+ G +L EG+ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFSAITGDGFKSLEEGEEVSFEVVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|300690669|ref|YP_003751664.1| cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
PSI07]
gi|299077729|emb|CBJ50367.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
PSI07]
Length = 67
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q
Sbjct: 1 MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMGGFKTLKEGQRVVFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|75758582|ref|ZP_00738701.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|206972882|ref|ZP_03233804.1| conserved domain protein [Bacillus cereus AH1134]
gi|228905763|ref|ZP_04069678.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|228943462|ref|ZP_04105906.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228976283|ref|ZP_04136754.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|229073834|ref|ZP_04206924.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|229191418|ref|ZP_04318403.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|74493928|gb|EAO57025.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|206731766|gb|EDZ48966.1| conserved domain protein [Bacillus cereus AH1134]
gi|228592100|gb|EEK49934.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|228709285|gb|EEL61369.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|228783387|gb|EEM31495.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816242|gb|EEM62423.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228853880|gb|EEM98623.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
Length = 67
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D Q
Sbjct: 1 MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQAVTFDLEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQASNVRK 65
>gi|302543183|ref|ZP_07295525.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|302460801|gb|EFL23894.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
Length = 67
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|228475724|ref|ZP_04060442.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|228270506|gb|EEK11941.1| conserved hypothetical protein [Staphylococcus hominis SK119]
Length = 66
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E GDDVF+H S +A+ G L EGQ V +D +
Sbjct: 1 MNNGTVKWFNAEKGFGFIERED----GDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 GK--QATNVVPV 66
>gi|186473789|ref|YP_001861131.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184196121|gb|ACC74085.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ +
Sbjct: 1 METGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEITGEGFKTLAENQKVSFEIKKGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQAANIKPL 67
>gi|149377667|ref|ZP_01895403.1| cold-shock DNA-binding domain family protein [Marinobacter
algicola DG893]
gi|149358020|gb|EDM46506.1| cold-shock DNA-binding domain family protein [Marinobacter
algicola DG893]
Length = 68
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V + Q
Sbjct: 4 TTGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENVTAI 68
>gi|73542439|ref|YP_296959.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72119852|gb|AAZ62115.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 69
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ +++F H SA+ AG L EGQ V+++ VQ
Sbjct: 1 MASGIVKWFNDAKGFGFIKPDEGE---EELFAHFSAIQMAGFKTLKEGQRVSFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|126461377|ref|YP_001042491.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|126103041|gb|ABN75719.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
ATCC 17029]
Length = 68
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D
Sbjct: 1 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|77462500|ref|YP_352004.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|77386918|gb|ABA78103.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
Length = 77
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D
Sbjct: 10 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 66 NGRESATNLVL 76
>gi|89071112|ref|ZP_01158315.1| cold shock family protein [Oceanicola granulosus HTCC2516]
gi|89043360|gb|EAR49581.1| cold shock family protein [Oceanicola granulosus HTCC2516]
Length = 68
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PE G DVF+H SAV AGL L + Q VTYD +
Sbjct: 1 MAKGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERAGLTGLADDQKVTYDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N++L
Sbjct: 57 DGRESAVNIQL 67
>gi|170693647|ref|ZP_02884805.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|170141429|gb|EDT09599.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + S G +L E Q V++D
Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRSEGFKSLKENQRVSFDVKAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQPL 67
>gi|325283100|ref|YP_004255641.1| cold-shock DNA-binding domain-containing protein [Deinococcus
proteolyticus MRP]
gi|324314909|gb|ADY26024.1| cold-shock DNA-binding domain protein [Deinococcus proteolyticus
MRP]
Length = 80
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ +KGYGFI DVF+H SA+ S G L EG V ++
Sbjct: 1 MPQGRVKWFSVEKGYGFIE----HPGNPDVFVHYSAIQSGGFRKLNEGDEVEFEVGDGQG 56
Query: 62 NGKYSAENLKLVPKSS 77
+ A+N+ + +
Sbjct: 57 DRGPQAKNVVVTNAAP 72
>gi|27382579|ref|NP_774108.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27355751|dbj|BAC52733.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 71
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +L EGQ +T++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLAEGQRITFEVEPDK 57
Query: 61 ANGKYSAENLKLVP 74
A NL ++
Sbjct: 58 KGKGPKAVNLVILS 71
>gi|300703253|ref|YP_003744855.1| cold shock-like protein cspd (csp-d) [Ralstonia solanacearum
CFBP2957]
gi|299070916|emb|CBJ42220.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
CFBP2957]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q
Sbjct: 1 MASGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|227822821|ref|YP_002826793.1| putative cold shock protein [Sinorhizobium fredii NGR234]
gi|227341822|gb|ACP26040.1| putative cold shock protein [Sinorhizobium fredii NGR234]
Length = 71
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI PE G D+F+H SAV ++GL L+E Q V++D +
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPEN---GGADIFVHISAVQASGLNGLSENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKLV 73
A NL++V
Sbjct: 58 RGKGPKAVNLQIV 70
>gi|209884462|ref|YP_002288319.1| hypothetical protein OCAR_5322 [Oligotropha carboxidovorans OM5]
gi|209872658|gb|ACI92454.1| conserved domain protein [Oligotropha carboxidovorans OM5]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF+H SAV AGL L EGQ V ++ ++
Sbjct: 1 MTIGTVKWFNGQKGFGFIAPQD---GGNDVFVHISAVERAGLTGLAEGQKVEFEAKTDNM 57
Query: 62 NGKYSAENLKLV 73
GK SAENL LV
Sbjct: 58 RGKTSAENLSLV 69
>gi|15800638|ref|NP_286652.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H7 EDL933]
gi|15830220|ref|NP_308993.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H7 str. Sakai]
gi|16128848|ref|NP_415401.1| inhibitor of DNA replication, cold shock protein homolog
[Escherichia coli str. K-12 substr. MG1655]
gi|24112256|ref|NP_706766.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella flexneri 2a str. 301]
gi|30062368|ref|NP_836539.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella flexneri 2a str. 2457T]
gi|74311425|ref|YP_309844.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella sonnei Ss046]
gi|82543367|ref|YP_407314.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella boydii Sb227]
gi|82777597|ref|YP_403946.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella dysenteriae Sd197]
gi|89107731|ref|AP_001511.1| cold shock protein homolog [Escherichia coli str. K-12 substr.
W3110]
gi|110641081|ref|YP_668811.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli 536]
gi|157156996|ref|YP_001462077.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli E24377A]
gi|157160403|ref|YP_001457721.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli HS]
gi|168752461|ref|ZP_02777483.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4113]
gi|168758796|ref|ZP_02783803.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4401]
gi|168765085|ref|ZP_02790092.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4501]
gi|168769857|ref|ZP_02794864.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4486]
gi|168772142|ref|ZP_02797149.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4486]
gi|168777873|ref|ZP_02802880.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4196]
gi|168783791|ref|ZP_02808798.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4076]
gi|168789132|ref|ZP_02814139.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC869]
gi|168802711|ref|ZP_02827718.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC508]
gi|170020717|ref|YP_001725671.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli ATCC 8739]
gi|170080539|ref|YP_001729859.1| cold shock protein-like protein [Escherichia coli str. K-12
substr. DH10B]
gi|170683368|ref|YP_001744327.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli SMS-3-5]
gi|170769169|ref|ZP_02903622.1| cold shock domain protein CspD [Escherichia albertii TW07627]
gi|187731789|ref|YP_001880922.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella boydii CDC 3083-94]
gi|188495418|ref|ZP_03002688.1| cold shock domain protein CspD [Escherichia coli 53638]
gi|191167603|ref|ZP_03029414.1| cold shock domain protein CspD [Escherichia coli B7A]
gi|191172141|ref|ZP_03033685.1| cold shock domain protein CspD [Escherichia coli F11]
gi|193064669|ref|ZP_03045748.1| cold shock domain protein CspD [Escherichia coli E22]
gi|193071761|ref|ZP_03052657.1| cold shock domain protein CspD [Escherichia coli E110019]
gi|194428406|ref|ZP_03060947.1| cold shock domain protein CspD [Escherichia coli B171]
gi|194433169|ref|ZP_03065451.1| cold shock domain protein CspD [Shigella dysenteriae 1012]
gi|194438741|ref|ZP_03070828.1| cold shock domain protein CspD [Escherichia coli 101-1]
gi|195939543|ref|ZP_03084925.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H7 str. EC4024]
gi|208807912|ref|ZP_03250249.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4206]
gi|208814789|ref|ZP_03255968.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4045]
gi|208822048|ref|ZP_03262367.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4042]
gi|209400231|ref|YP_002269554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4115]
gi|209918129|ref|YP_002292213.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli SE11]
gi|215486011|ref|YP_002328442.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O127:H6 str. E2348/69]
gi|217324268|ref|ZP_03440352.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
TW14588]
gi|218553466|ref|YP_002386379.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli IAI1]
gi|218557784|ref|YP_002390697.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli S88]
gi|218688662|ref|YP_002396874.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli ED1a]
gi|218694354|ref|YP_002402021.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli 55989]
gi|218700605|ref|YP_002408234.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli IAI39]
gi|218704309|ref|YP_002411828.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli UMN026]
gi|227884154|ref|ZP_04001959.1| cold shock family protein CspD [Escherichia coli 83972]
gi|238900139|ref|YP_002925935.1| cold shock protein-like protein [Escherichia coli BW2952]
gi|253774090|ref|YP_003036921.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160995|ref|YP_003044103.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli B str. REL606]
gi|254792081|ref|YP_003076918.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H7 str. TW14359]
gi|256020999|ref|ZP_05434864.1| stationary phase/starvation inducible regulatory protein CspD
[Shigella sp. D9]
gi|256023493|ref|ZP_05437358.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia sp. 4_1_40B]
gi|260843131|ref|YP_003220909.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str.
12009]
gi|260854172|ref|YP_003228063.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str.
11368]
gi|260867053|ref|YP_003233455.1| cold shock protein homolog CspD [Escherichia coli O111:H- str.
11128]
gi|261225536|ref|ZP_05939817.1| cold shock protein-like protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258495|ref|ZP_05951028.1| hypothetical protein EscherichiacoliO157EcO_22126 [Escherichia
coli O157:H7 str. FRIK966]
gi|293404188|ref|ZP_06648182.1| cold shock-like protein cspD [Escherichia coli FVEC1412]
gi|293409259|ref|ZP_06652835.1| cold shock domain-containing protein CspD [Escherichia coli B354]
gi|297516223|ref|ZP_06934609.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli OP50]
gi|298379969|ref|ZP_06989574.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli FVEC1302]
gi|300817018|ref|ZP_07097237.1| cold shock domain protein CspD [Escherichia coli MS 107-1]
gi|300823618|ref|ZP_07103745.1| cold shock domain protein CspD [Escherichia coli MS 119-7]
gi|300895697|ref|ZP_07114293.1| cold shock domain protein CspD [Escherichia coli MS 198-1]
gi|300902416|ref|ZP_07120398.1| cold shock domain protein CspD [Escherichia coli MS 84-1]
gi|300921088|ref|ZP_07137472.1| cold shock domain protein CspD [Escherichia coli MS 115-1]
gi|300922549|ref|ZP_07138650.1| cold shock domain protein CspD [Escherichia coli MS 182-1]
gi|300928423|ref|ZP_07143956.1| cold shock domain protein CspD [Escherichia coli MS 187-1]
gi|300935726|ref|ZP_07150694.1| cold shock domain protein CspD [Escherichia coli MS 21-1]
gi|300950108|ref|ZP_07164054.1| cold shock domain protein CspD [Escherichia coli MS 116-1]
gi|300954452|ref|ZP_07166904.1| cold shock domain protein CspD [Escherichia coli MS 175-1]
gi|300978556|ref|ZP_07174309.1| cold shock domain protein CspD [Escherichia coli MS 45-1]
gi|300991781|ref|ZP_07179644.1| cold shock domain protein CspD [Escherichia coli MS 200-1]
gi|301020524|ref|ZP_07184608.1| cold shock domain protein CspD [Escherichia coli MS 69-1]
gi|301024393|ref|ZP_07188080.1| cold shock domain protein CspD [Escherichia coli MS 196-1]
gi|301051190|ref|ZP_07198020.1| cold shock domain protein CspD [Escherichia coli MS 185-1]
gi|301305346|ref|ZP_07211441.1| cold shock domain protein CspD [Escherichia coli MS 124-1]
gi|301328606|ref|ZP_07221667.1| cold shock domain protein CspD [Escherichia coli MS 78-1]
gi|301646324|ref|ZP_07246212.1| cold shock domain protein CspD [Escherichia coli MS 146-1]
gi|306812670|ref|ZP_07446863.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli NC101]
gi|307137508|ref|ZP_07496864.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli H736]
gi|307311732|ref|ZP_07591372.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|309783998|ref|ZP_07678642.1| cold shock domain protein CspD [Shigella dysenteriae 1617]
gi|309795323|ref|ZP_07689741.1| cold shock domain protein CspD [Escherichia coli MS 145-7]
gi|312969051|ref|ZP_07783258.1| cold shock domain protein CspD [Escherichia coli 2362-75]
gi|312971007|ref|ZP_07785186.1| cold shock domain protein CspD [Escherichia coli 1827-70]
gi|331641401|ref|ZP_08342536.1| cold shock domain protein CspD [Escherichia coli H736]
gi|331646148|ref|ZP_08347251.1| cold shock domain protein CspD [Escherichia coli M605]
gi|331651899|ref|ZP_08352918.1| cold shock domain protein CspD [Escherichia coli M718]
gi|331656952|ref|ZP_08357914.1| cold shock domain protein CspD [Escherichia coli TA206]
gi|331662294|ref|ZP_08363217.1| cold shock domain protein CspD [Escherichia coli TA143]
gi|331667254|ref|ZP_08368119.1| cold shock domain protein CspD [Escherichia coli TA271]
gi|331672417|ref|ZP_08373208.1| cold shock domain protein CspD [Escherichia coli TA280]
gi|331676668|ref|ZP_08377364.1| cold shock domain protein CspD [Escherichia coli H591]
gi|331682389|ref|ZP_08383008.1| cold shock domain protein CspD [Escherichia coli H299]
gi|71154152|sp|P0A970|CSPD_ECO57 RecName: Full=Cold shock-like protein CspD; Short=CSP-D
gi|71154153|sp|P0A969|CSPD_ECOL6 RecName: Full=Cold shock-like protein CspD; Short=CSP-D
gi|71154154|sp|P0A968|CSPD_ECOLI RecName: Full=Cold shock-like protein CspD; Short=CSP-D
gi|71154155|sp|P0A971|CSPD_SHIFL RecName: Full=Cold shock-like protein CspD; Short=CSP-D
gi|12513910|gb|AAG55262.1|AE005269_6 cold shock protein [Escherichia coli O157:H7 str. EDL933]
gi|1651400|dbj|BAA35599.1| cold shock protein homolog [Escherichia coli str. K12 substr.
W3110]
gi|1787107|gb|AAC73967.1| inhibitor of DNA replication, cold shock protein homolog
[Escherichia coli str. K-12 substr. MG1655]
gi|13360425|dbj|BAB34389.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
gi|24051106|gb|AAN42473.1| cold shock protein [Shigella flexneri 2a str. 301]
gi|30040613|gb|AAP16345.1| cold shock protein [Shigella flexneri 2a str. 2457T]
gi|73854902|gb|AAZ87609.1| cold shock protein [Shigella sonnei Ss046]
gi|81241745|gb|ABB62455.1| cold shock protein [Shigella dysenteriae Sd197]
gi|81244778|gb|ABB65486.1| cold shock protein [Shigella boydii Sb227]
gi|110342673|gb|ABG68910.1| cold shock-like protein CspD [Escherichia coli 536]
gi|157066083|gb|ABV05338.1| cold shock domain protein CspD [Escherichia coli HS]
gi|157079026|gb|ABV18734.1| cold shock domain protein CspD [Escherichia coli E24377A]
gi|169755645|gb|ACA78344.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169888374|gb|ACB02081.1| cold shock protein-like protein [Escherichia coli str. K-12
substr. DH10B]
gi|170121821|gb|EDS90752.1| cold shock domain protein CspD [Escherichia albertii TW07627]
gi|170521086|gb|ACB19264.1| cold shock domain protein CspD [Escherichia coli SMS-3-5]
gi|187428781|gb|ACD08055.1| cold shock domain protein CspD [Shigella boydii CDC 3083-94]
gi|187766991|gb|EDU30835.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4196]
gi|188013698|gb|EDU51820.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4113]
gi|188490617|gb|EDU65720.1| cold shock domain protein CspD [Escherichia coli 53638]
gi|188998900|gb|EDU67886.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4076]
gi|189354451|gb|EDU72870.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4401]
gi|189359394|gb|EDU77813.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4486]
gi|189361135|gb|EDU79554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4486]
gi|189365045|gb|EDU83461.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4501]
gi|189371144|gb|EDU89560.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC869]
gi|189375363|gb|EDU93779.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC508]
gi|190902364|gb|EDV62102.1| cold shock domain protein CspD [Escherichia coli B7A]
gi|190907668|gb|EDV67263.1| cold shock domain protein CspD [Escherichia coli F11]
gi|192927726|gb|EDV82341.1| cold shock domain protein CspD [Escherichia coli E22]
gi|192954918|gb|EDV85425.1| cold shock domain protein CspD [Escherichia coli E110019]
gi|194413621|gb|EDX29902.1| cold shock domain protein CspD [Escherichia coli B171]
gi|194418666|gb|EDX34753.1| cold shock domain protein CspD [Shigella dysenteriae 1012]
gi|194422373|gb|EDX38373.1| cold shock domain protein CspD [Escherichia coli 101-1]
gi|208727713|gb|EDZ77314.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4206]
gi|208731437|gb|EDZ80125.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4045]
gi|208737533|gb|EDZ85216.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4042]
gi|209161631|gb|ACI39064.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
EC4115]
gi|209911388|dbj|BAG76462.1| cold shock-like protein [Escherichia coli SE11]
gi|215264083|emb|CAS08425.1| cold shock protein homolog [Escherichia coli O127:H6 str.
E2348/69]
gi|217320489|gb|EEC28913.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
TW14588]
gi|218351086|emb|CAU96790.1| cold shock protein homolog [Escherichia coli 55989]
gi|218360234|emb|CAQ97784.1| cold shock protein homolog [Escherichia coli IAI1]
gi|218364553|emb|CAR02237.1| cold shock protein homolog [Escherichia coli S88]
gi|218370591|emb|CAR18398.1| cold shock protein homolog [Escherichia coli IAI39]
gi|218426226|emb|CAR07051.1| cold shock protein homolog [Escherichia coli ED1a]
gi|218431406|emb|CAR12284.1| cold shock protein homolog [Escherichia coli UMN026]
gi|227838906|gb|EEJ49372.1| cold shock family protein CspD [Escherichia coli 83972]
gi|238860165|gb|ACR62163.1| cold shock protein-like protein [Escherichia coli BW2952]
gi|242376695|emb|CAQ31408.1| DNA replication inhibitor [Escherichia coli BL21(DE3)]
gi|253325134|gb|ACT29736.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972896|gb|ACT38567.1| cold shock protein-like protein [Escherichia coli B str. REL606]
gi|253977110|gb|ACT42780.1| cold shock protein-like protein [Escherichia coli BL21(DE3)]
gi|254591481|gb|ACT70842.1| cold shock protein-like protein [Escherichia coli O157:H7 str.
TW14359]
gi|257752821|dbj|BAI24323.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str.
11368]
gi|257758278|dbj|BAI29775.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str.
12009]
gi|257763409|dbj|BAI34904.1| cold shock protein homolog CspD [Escherichia coli O111:H- str.
11128]
gi|260449973|gb|ACX40395.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|281178015|dbj|BAI54345.1| cold shock-like protein [Escherichia coli SE15]
gi|284920734|emb|CBG33797.1| cold shock-like protein CspD [Escherichia coli 042]
gi|291428774|gb|EFF01799.1| cold shock-like protein cspD [Escherichia coli FVEC1412]
gi|291469727|gb|EFF12211.1| cold shock domain-containing protein CspD [Escherichia coli B354]
gi|294490756|gb|ADE89512.1| cold shock domain protein CspD [Escherichia coli IHE3034]
gi|298279667|gb|EFI21175.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli FVEC1302]
gi|299880400|gb|EFI88611.1| cold shock domain protein CspD [Escherichia coli MS 196-1]
gi|300297211|gb|EFJ53596.1| cold shock domain protein CspD [Escherichia coli MS 185-1]
gi|300305535|gb|EFJ60055.1| cold shock domain protein CspD [Escherichia coli MS 200-1]
gi|300318602|gb|EFJ68386.1| cold shock domain protein CspD [Escherichia coli MS 175-1]
gi|300360366|gb|EFJ76236.1| cold shock domain protein CspD [Escherichia coli MS 198-1]
gi|300398657|gb|EFJ82195.1| cold shock domain protein CspD [Escherichia coli MS 69-1]
gi|300405448|gb|EFJ88986.1| cold shock domain protein CspD [Escherichia coli MS 84-1]
gi|300409635|gb|EFJ93173.1| cold shock domain protein CspD [Escherichia coli MS 45-1]
gi|300411939|gb|EFJ95249.1| cold shock domain protein CspD [Escherichia coli MS 115-1]
gi|300421095|gb|EFK04406.1| cold shock domain protein CspD [Escherichia coli MS 182-1]
gi|300450523|gb|EFK14143.1| cold shock domain protein CspD [Escherichia coli MS 116-1]
gi|300459089|gb|EFK22582.1| cold shock domain protein CspD [Escherichia coli MS 21-1]
gi|300463586|gb|EFK27079.1| cold shock domain protein CspD [Escherichia coli MS 187-1]
gi|300523818|gb|EFK44887.1| cold shock domain protein CspD [Escherichia coli MS 119-7]
gi|300530370|gb|EFK51432.1| cold shock domain protein CspD [Escherichia coli MS 107-1]
gi|300839364|gb|EFK67124.1| cold shock domain protein CspD [Escherichia coli MS 124-1]
gi|300844998|gb|EFK72758.1| cold shock domain protein CspD [Escherichia coli MS 78-1]
gi|301075427|gb|EFK90233.1| cold shock domain protein CspD [Escherichia coli MS 146-1]
gi|305853433|gb|EFM53872.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli NC101]
gi|306908287|gb|EFN38786.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|307552723|gb|ADN45498.1| cold shock-like protein CspD [Escherichia coli ABU 83972]
gi|307627710|gb|ADN72014.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli UM146]
gi|308120973|gb|EFO58235.1| cold shock domain protein CspD [Escherichia coli MS 145-7]
gi|308928141|gb|EFP73604.1| cold shock domain protein CspD [Shigella dysenteriae 1617]
gi|310336768|gb|EFQ01935.1| cold shock domain protein CspD [Escherichia coli 1827-70]
gi|312286453|gb|EFR14366.1| cold shock domain protein CspD [Escherichia coli 2362-75]
gi|312945398|gb|ADR26225.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O83:H1 str. NRG 857C]
gi|313650207|gb|EFS14619.1| cold shock domain protein CspD [Shigella flexneri 2a str. 2457T]
gi|315060166|gb|ADT74493.1| cold shock protein-like protein [Escherichia coli W]
gi|315135529|dbj|BAJ42688.1| cold shock protein [Escherichia coli DH1]
gi|315257918|gb|EFU37886.1| cold shock domain protein CspD [Escherichia coli MS 85-1]
gi|315287286|gb|EFU46697.1| cold shock domain protein CspD [Escherichia coli MS 110-3]
gi|315291074|gb|EFU50437.1| cold shock domain protein CspD [Escherichia coli MS 153-1]
gi|315296656|gb|EFU55951.1| cold shock domain protein CspD [Escherichia coli MS 16-3]
gi|315619192|gb|EFU99771.1| cold shock domain protein CspD [Escherichia coli 3431]
gi|320175321|gb|EFW50427.1| Cold shock protein CspD [Shigella dysenteriae CDC 74-1112]
gi|320180598|gb|EFW55527.1| Cold shock protein CspD [Shigella boydii ATCC 9905]
gi|320183181|gb|EFW58039.1| Cold shock protein CspD [Shigella flexneri CDC 796-83]
gi|320192634|gb|EFW67275.1| Cold shock protein CspD [Escherichia coli O157:H7 str. EC1212]
gi|320196625|gb|EFW71248.1| Cold shock protein CspD [Escherichia coli WV_060327]
gi|320202275|gb|EFW76846.1| Cold shock protein CspD [Escherichia coli EC4100B]
gi|320637751|gb|EFX07543.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H7 str. G5101]
gi|320642874|gb|EFX12075.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H- str. 493-89]
gi|320648331|gb|EFX16986.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H- str. H 2687]
gi|320654169|gb|EFX22237.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320659793|gb|EFX27349.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O55:H7 str. USDA 5905]
gi|320664263|gb|EFX31414.1| stationary phase/starvation inducible regulatory protein CspD
[Escherichia coli O157:H7 str. LSU-61]
gi|323155746|gb|EFZ41915.1| cold shock domain protein CspD [Escherichia coli EPECa14]
gi|323159505|gb|EFZ45485.1| cold shock domain protein CspD [Escherichia coli E128010]
gi|323165817|gb|EFZ51603.1| cold shock domain protein CspD [Shigella sonnei 53G]
gi|323172149|gb|EFZ57787.1| cold shock domain protein CspD [Escherichia coli LT-68]
gi|323175498|gb|EFZ61093.1| cold shock domain protein CspD [Escherichia coli 1180]
gi|323185155|gb|EFZ70520.1| cold shock domain protein CspD [Escherichia coli 1357]
gi|323190702|gb|EFZ75971.1| cold shock domain protein CspD [Escherichia coli RN587/1]
gi|323379277|gb|ADX51545.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323942797|gb|EGB38962.1| cold shock domain-containing protein CspD [Escherichia coli E482]
gi|323947162|gb|EGB43172.1| cold shock domain-containing protein CspD [Escherichia coli H120]
gi|323953416|gb|EGB49282.1| cold shock domain-containing protein CspD [Escherichia coli H252]
gi|323958169|gb|EGB53878.1| cold shock domain-containing protein CspD [Escherichia coli H263]
gi|323962993|gb|EGB58565.1| cold shock domain-containing protein CspD [Escherichia coli H489]
gi|323967316|gb|EGB62739.1| cold shock domain-containing protein CspD [Escherichia coli M863]
gi|323969635|gb|EGB64922.1| cold shock domain-containing protein CspD [Escherichia coli
TA007]
gi|323976733|gb|EGB71821.1| cold shock domain-containing protein CspD [Escherichia coli
TW10509]
gi|324009834|gb|EGB79053.1| cold shock domain protein CspD [Escherichia coli MS 57-2]
gi|324012987|gb|EGB82206.1| cold shock domain protein CspD [Escherichia coli MS 60-1]
gi|324019030|gb|EGB88249.1| cold shock domain protein CspD [Escherichia coli MS 117-3]
gi|324116094|gb|EGC10018.1| cold shock domain-containing protein CspD [Escherichia coli
E1167]
gi|326346202|gb|EGD69940.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1044]
gi|327253668|gb|EGE65297.1| cold shock domain protein CspD [Escherichia coli STEC_7v]
gi|330910662|gb|EGH39172.1| cold shock protein CspD [Escherichia coli AA86]
gi|331038199|gb|EGI10419.1| cold shock domain protein CspD [Escherichia coli H736]
gi|331044900|gb|EGI17027.1| cold shock domain protein CspD [Escherichia coli M605]
gi|331050177|gb|EGI22235.1| cold shock domain protein CspD [Escherichia coli M718]
gi|331055200|gb|EGI27209.1| cold shock domain protein CspD [Escherichia coli TA206]
gi|331060716|gb|EGI32680.1| cold shock domain protein CspD [Escherichia coli TA143]
gi|331065610|gb|EGI37503.1| cold shock domain protein CspD [Escherichia coli TA271]
gi|331070612|gb|EGI41976.1| cold shock domain protein CspD [Escherichia coli TA280]
gi|331075357|gb|EGI46655.1| cold shock domain protein CspD [Escherichia coli H591]
gi|331080020|gb|EGI51199.1| cold shock domain protein CspD [Escherichia coli H299]
gi|332088860|gb|EGI93972.1| cold shock domain protein CspD [Shigella boydii 5216-82]
gi|332091104|gb|EGI96194.1| cold shock domain protein CspD [Shigella dysenteriae 155-74]
gi|332097053|gb|EGJ02036.1| cold shock domain protein CspD [Shigella boydii 3594-74]
gi|332342268|gb|AEE55602.1| cold shock domain protein CspD [Escherichia coli UMNK88]
gi|332759795|gb|EGJ90098.1| cold shock domain protein CspD [Shigella flexneri 4343-70]
gi|332760573|gb|EGJ90862.1| cold shock domain protein CspD [Shigella flexneri 2747-71]
gi|332762936|gb|EGJ93186.1| cold shock domain protein CspD [Shigella flexneri K-671]
gi|332768058|gb|EGJ98244.1| cold shock domain protein CspD [Shigella flexneri 2930-71]
gi|333006683|gb|EGK26182.1| cold shock domain protein CspD [Shigella flexneri VA-6]
gi|333006920|gb|EGK26415.1| cold shock domain protein CspD [Shigella flexneri K-218]
gi|333008808|gb|EGK28268.1| cold shock domain protein CspD [Shigella flexneri K-272]
gi|333020115|gb|EGK39385.1| cold shock domain protein CspD [Shigella flexneri K-227]
gi|333021002|gb|EGK40260.1| cold shock domain protein CspD [Shigella flexneri K-304]
Length = 74
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 58 GN--HASVIVPVEVEA 71
>gi|260905033|ref|ZP_05913355.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ DVF H SA+ S G L EGQ V +D
Sbjct: 1 MATGTVKWFNSEKGFGFIQPDD---GSADVFTHFSAIESTGYRELAEGQNVEFDSEMGSK 57
Query: 62 NGKYSAENLKLV 73
A +++ +
Sbjct: 58 G--LQATSVRPL 67
>gi|75676560|ref|YP_318981.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|74421430|gb|ABA05629.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ V ++ +
Sbjct: 1 MTTGTVKWFNGQKGFGFIQPND---GGNDVFVHISAVERAGLSGLNEGQQVNFELKTDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKVSAENLSL 68
>gi|294498556|ref|YP_003562256.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295703859|ref|YP_003596934.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294348493|gb|ADE68822.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294801518|gb|ADF38584.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MTQGTVKWFNADKGFGFIEIE----GGDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--AQAANVHK 65
>gi|254500655|ref|ZP_05112806.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222436726|gb|EEE43405.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 74
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + YD ++
Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPDN---GGPDAFVHISAVERAGMHEIVEGQKIGYDMERDS 61
Query: 61 ANGKYSAENLK 71
+GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72
>gi|209519137|ref|ZP_03267942.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
gi|209500437|gb|EEA00488.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + S G +L E Q V+++ +
Sbjct: 1 METGVVKWFNDAKGFGFITSD---AGGEDLFAHFSEIRSEGFKSLKENQRVSFEIKTSPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQPL 67
>gi|149192133|ref|ZP_01870355.1| cold shock-like protein CspD [Vibrio shilonii AK1]
gi|148834036|gb|EDL51051.1| cold shock-like protein CspD [Vibrio shilonii AK1]
Length = 73
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIKMDGYRTLKAGQQVNYEVEEGPK 57
Query: 62 NGKYSAENLKLVP 74
Y A ++ V
Sbjct: 58 G--YHASSVTPVE 68
>gi|284046161|ref|YP_003396501.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
gi|283950382|gb|ADB53126.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ +KG+GFITP+ E D+F+H + + S G +L EG V+YD Q D
Sbjct: 1 MPTGTVKWFSDEKGFGFITPD---EGSRDLFVHHTGINSDGYRSLAEGAKVSYDEEQGDK 57
Query: 62 NGKYSAENLKLV 73
K A N+ +
Sbjct: 58 GPK--AVNVSAI 67
>gi|317129010|ref|YP_004095292.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
gi|315473958|gb|ADU30561.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V+++ Q
Sbjct: 1 MEQGKVKWFNAEKGFGFIEVE----GGDDVFVHFSAINGEGFKTLEEGQDVSFEVEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVNKL 66
>gi|95928508|ref|ZP_01311255.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
gi|95135298|gb|EAT16950.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N KG+GFI + G DVF+H SA+ G +L EG V ++
Sbjct: 1 MAQGSVKWFNDAKGFGFIEQD----GGPDVFVHFSAIQGDGFKSLAEGDRVEFEITDGQK 56
Query: 62 NGKYSAENLKL 72
G +A +KL
Sbjct: 57 -GPQAANVIKL 66
>gi|332686444|ref|YP_004456218.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
gi|332370453|dbj|BAK21409.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E G+DVF+H SA+ G L EG VT+D +
Sbjct: 1 METGTVKWFNSDKGFGFITAEN----GNDVFVHFSAIQGDGFKTLEEGHTVTFDIEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|291523520|emb|CBK81813.1| cold-shock DNA-binding protein family [Coprococcus catus GD/7]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFI+ E G+DVF+H S + S G +L EGQ V ++ ++
Sbjct: 1 MNKGTVKWFNNQKGFGFISDE----QGNDVFVHYSGIQSNGFKSLEEGQEVEFEVIEGQK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVVKL 66
>gi|302529053|ref|ZP_07281395.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302437948|gb|EFL09764.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+P+ DVF+H S + G +L E V ++ Q
Sbjct: 1 MTQGTVKWFNAEKGFGFISPDD---GSADVFVHYSEIQGNGFRSLDENARVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRAI 67
>gi|322420218|ref|YP_004199441.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320126605|gb|ADW14165.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF H SA+ G +L EG VT+D V+
Sbjct: 1 MANGTVKWFNDSKGFGFLEQEN----GEDVFCHFSAITGDGFKSLAEGDRVTFDLVKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--LQAANVKKI 66
>gi|95929691|ref|ZP_01312433.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
gi|95134388|gb|EAT16045.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ S G +L EG V++D +
Sbjct: 1 MAEGTVKWFNDTKGFGFIEQDN----GPDVFVHFSAIQSEGFKSLAEGDRVSFDVTEGQK 56
Query: 62 NGKYSAENLKL 72
G SA K+
Sbjct: 57 -GPQSANVCKI 66
>gi|86157700|ref|YP_464485.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197122991|ref|YP_002134942.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|220917780|ref|YP_002493084.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85774211|gb|ABC81048.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196172840|gb|ACG73813.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|219955634|gb|ACL66018.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ +G G+DVF+H +A+ + G +L EGQ V ++ +
Sbjct: 1 MASGTVKWFNDAKGFGFISQDG---GGEDVFVHHTAIVAEGFRSLQEGQRVEFEVKKGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 G--LQAANVR 65
>gi|163744653|ref|ZP_02152013.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
gi|161381471|gb|EDQ05880.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESATNIAL 67
>gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [Corynebacterium glutamicum R]
gi|140844359|dbj|BAF53358.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP+KG+GFI P DVF+H S + G L E QLV ++ +
Sbjct: 1 MAQGTVKWFNPEKGFGFIAPSD---GSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAK 57
Query: 62 NGKYSAE 68
+ A
Sbjct: 58 GLQAQAV 64
>gi|51244214|ref|YP_064098.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54]
gi|50875251|emb|CAG35091.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila
LSv54]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E GDD+F+H +++ ++G L EG VT+D Q
Sbjct: 1 MAEGTVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVTFDIEQGPK 56
Query: 62 NGKYSAENLKLV 73
+A N+ ++
Sbjct: 57 G--PAAANVTVI 66
>gi|239981276|ref|ZP_04703800.1| cold shock protein [Streptomyces albus J1074]
gi|291453133|ref|ZP_06592523.1| cold shock protein [Streptomyces albus J1074]
gi|291356082|gb|EFE82984.1| cold shock protein [Streptomyces albus J1074]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELIEGQKVSFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+ +
Sbjct: 58 G--PQAENIVV 66
>gi|184156018|ref|YP_001844358.1| cold shock protein [Lactobacillus fermentum IFO 3956]
gi|260662726|ref|ZP_05863620.1| cold shock protein [Lactobacillus fermentum 28-3-CHN]
gi|183227362|dbj|BAG27878.1| cold shock protein [Lactobacillus fermentum IFO 3956]
gi|260552807|gb|EEX25806.1| cold shock protein [Lactobacillus fermentum 28-3-CHN]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G+IKW+N +KGYGFI+ E GDDVF+H SA+ G L EGQ VT+D D
Sbjct: 1 MEKGTIKWFNDEKGYGFISREA----GDDVFVHFSAIQGDGFKTLEEGQSVTFDVETGDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQAANVSK 65
>gi|157146760|ref|YP_001454079.1| cold shock protein CspE [Citrobacter koseri ATCC BAA-895]
gi|157083965|gb|ABV13643.1| hypothetical protein CKO_02534 [Citrobacter koseri ATCC BAA-895]
Length = 100
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 36 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 91
Query: 64 KYSAENL 70
SA N+
Sbjct: 92 -PSAANV 97
>gi|54025407|ref|YP_119649.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54016915|dbj|BAD58285.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N +KG+GFI +G G DVF+H SA+ +G L EGQ V ++ Q
Sbjct: 1 MAQGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A++++ +
Sbjct: 58 G--PQAQDVRAI 67
>gi|88798702|ref|ZP_01114285.1| Cold shock protein [Reinekea sp. MED297]
gi|88778465|gb|EAR09657.1| Cold shock protein [Reinekea sp. MED297]
Length = 87
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + +D+F H S++ G L GQ V ++ V+++
Sbjct: 1 MPVGKVKWFNNAKGFGFIVCDDHK---EDLFAHFSSIQMEGYKTLKAGQDVEFETVKSER 57
Query: 62 NGKYSAENLKLVP 74
A N+++V
Sbjct: 58 G--IHAVNIQVVD 68
>gi|329895883|ref|ZP_08271211.1| Cold shock protein CspE [gamma proteobacterium IMCC3088]
gi|328922101|gb|EGG29460.1| Cold shock protein CspE [gamma proteobacterium IMCC3088]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF+H SA+ G L +GQ V +D
Sbjct: 4 TTGTVKWFNETKGFGFIERE----GGPDVFVHFSAIKGDGFKTLADGQKVEFDVTDGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENVVPL 68
>gi|312144475|ref|YP_003995921.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
gi|309388505|gb|ADO76385.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
DSM 2228]
gi|311905126|gb|ADQ15567.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D
Sbjct: 1 MIYTGTVKWFDGKKGFGFIERED----GDDVFAHFSAIEEEGFKNLDEGQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 RG--PQAANIVKL 67
>gi|134301076|ref|YP_001114572.1| cold-shock DNA-binding domain-containing protein
[Desulfotomaculum reducens MI-1]
gi|134053776|gb|ABO51747.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
MI-1]
Length = 65
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFI E G DVF H SA+ G L EGQ V +D V+ +
Sbjct: 2 QGTVKWFNAEKGFGFIEVE----GGKDVFAHFSAITGDGYKTLEEGQRVEFDVVEGNRG- 56
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 57 -PQAENIVKL 65
>gi|320009867|gb|ADW04717.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 58 G--PQAENITP 66
>gi|126650270|ref|ZP_01722498.1| cold shock protein [Bacillus sp. B14905]
gi|126592920|gb|EAZ86902.1| cold shock protein [Bacillus sp. B14905]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G+DVF+H SA+ + G L EGQ V + + +
Sbjct: 1 MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQTDGFKTLEEGQKVEFGVEEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVVKI 66
>gi|119475889|ref|ZP_01616241.1| Cold shock protein [marine gamma proteobacterium HTCC2143]
gi|119450516|gb|EAW31750.1| Cold shock protein [marine gamma proteobacterium HTCC2143]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF+H SA+ S+G L EGQ V + Q
Sbjct: 5 TTGTVKWFNESKGFGFIEQE----SGPDVFVHFSAINSSGFKTLAEGQKVEFTVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --PQAENVVPL 69
>gi|54309148|ref|YP_130168.1| putative cold shock-like protein cspG [Photobacterium profundum
SS9]
gi|46913580|emb|CAG20366.1| Putative cold shock-like protein cspG [Photobacterium profundum
SS9]
Length = 82
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+Y+ Q
Sbjct: 17 ATGTVKWFNEEKGFGFITQDN---GGADVFVHFRAITGDGFKTLAEGQKVSYETEQGPKG 73
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 74 --LQAANVEAI 82
>gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N KG+GFITPE G D+F+H SA+A L EG V ++ ND
Sbjct: 1 MRTTGKVKWFNSAKGFGFITPED---GGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55
Query: 61 ANGKYSAENLKLV 73
A+N+ ++
Sbjct: 56 GKKGPEAQNVTVL 68
>gi|218548403|ref|YP_002382194.1| cold shock protein-like protein [Escherichia fergusonii ATCC
35469]
gi|218355944|emb|CAQ88559.1| cold shock protein homolog [Escherichia fergusonii ATCC 35469]
gi|324113824|gb|EGC07799.1| cold shock domain-containing protein CspD [Escherichia fergusonii
B253]
gi|325496824|gb|EGC94683.1| cold shock protein [Escherichia fergusonii ECD227]
Length = 73
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQGPK 57
Query: 62 NGKYSAEN 69
S
Sbjct: 58 GNHASVIV 65
>gi|170785227|pdb|3CAM|A Chain A, Crystal Structure Of The Cold Shock Domain Protein From
Neisseria Meningitidis
gi|170785228|pdb|3CAM|B Chain B, Crystal Structure Of The Cold Shock Domain Protein From
Neisseria Meningitidis
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D
Sbjct: 2 ATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINXEGFKTLKEGQRVSFDVTTGPKG 58
Query: 63 GKYSAENLK 71
A N++
Sbjct: 59 K--QAANIQ 65
>gi|167758030|ref|ZP_02430157.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC
35704]
gi|167663927|gb|EDS08057.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC
35704]
Length = 80
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+V +G++KW+N KGYGFI+ E G+DVF+H S + G +L EGQ V YD +
Sbjct: 14 IVMKGTVKWFNNQKGYGFISDEA----GNDVFVHYSGLNMDGFKSLEEGQEVEYDVTEGA 69
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 70 KG--PQAVNVTRL 80
>gi|77917987|ref|YP_355802.1| cold shock protein [Pelobacter carbinolicus DSM 2380]
gi|77544070|gb|ABA87632.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
DSM 2380]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ G +L EG V++D VQ
Sbjct: 1 MAEGTVKWFNDAKGFGFIEQDN----GPDVFVHFSAIQGEGFKSLAEGDRVSFDVVQGQK 56
Query: 62 NGKYSAENLKL 72
G SA K+
Sbjct: 57 -GPQSANVCKI 66
>gi|301056652|ref|YP_003794863.1| cold shock protein [Bacillus anthracis CI]
gi|300378821|gb|ADK07725.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V +
Sbjct: 1 MNMQGRVKWFNAEKGFGFIERED----GEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55
Query: 61 ANGKYSAENLKL 72
A G +A +KL
Sbjct: 56 ARGPQAANVVKL 67
>gi|297583350|ref|YP_003699130.1| cold-shock DNA-binding domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297141807|gb|ADH98564.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
MLS10]
Length = 65
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DDVF+H SA+ G L EGQ V +D Q
Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLDEGQTVNFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|146318066|ref|YP_001197778.1| cold shock protein [Streptococcus suis 05ZYH33]
gi|146320244|ref|YP_001199955.1| cold shock protein [Streptococcus suis 98HAH33]
gi|253751260|ref|YP_003024401.1| cold shock protein [Streptococcus suis SC84]
gi|253753161|ref|YP_003026301.1| cold shock protein [Streptococcus suis P1/7]
gi|253754984|ref|YP_003028124.1| cold shock protein [Streptococcus suis BM407]
gi|145688872|gb|ABP89378.1| Cold shock protein [Streptococcus suis 05ZYH33]
gi|145691050|gb|ABP91555.1| Cold shock protein [Streptococcus suis 98HAH33]
gi|251815549|emb|CAZ51132.1| cold shock protein [Streptococcus suis SC84]
gi|251817448|emb|CAZ55189.1| cold shock protein [Streptococcus suis BM407]
gi|251819406|emb|CAR44864.1| cold shock protein [Streptococcus suis P1/7]
gi|292557828|gb|ADE30829.1| Cold shock protein [Streptococcus suis GZ1]
gi|319757539|gb|ADV69481.1| cold shock protein [Streptococcus suis JS14]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF H S + S G +L +GQ VT++ Q
Sbjct: 1 MVQGTVKWFNAEKGFGFIAQEN----GPDVFAHFSEIQSNGFKSLEDGQKVTFEVEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQATNITKI 66
>gi|126733685|ref|ZP_01749432.1| cold shock protein CspA-related protein, putative [Roseobacter
sp. CCS2]
gi|126716551|gb|EBA13415.1| cold shock protein CspA-related protein, putative [Roseobacter
sp. CCS2]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLQDDQKVTFDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAVNLAL 67
>gi|239918416|ref|YP_002957974.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
2665]
gi|281415387|ref|ZP_06247129.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
2665]
gi|6225210|sp|O30875|CSPA_MICLC RecName: Full=Major cold shock protein
gi|2425105|gb|AAB70836.1| major cold-shock protein [Micrococcus luteus NCTC 2665]
gi|239839623|gb|ACS31420.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
2665]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI PE ++ DVF+H SA+ G L E V ++
Sbjct: 1 MAVGTVKWFNAEKGYGFIAPEDNSA---DVFVHFSAIQGNGFKELQENDRVEFETQDGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANVTKL 67
>gi|323342986|ref|ZP_08083217.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463050|gb|EFY08245.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N +KGYGFIT E G D+F+H SA+ + G L EGQ V+++ V+
Sbjct: 1 MSTGKVKFFNAEKGYGFITIE----GGQDIFVHYSAIVADGYKTLEEGQEVSFEVVEGPR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--EQAANVRGI 66
>gi|221369644|ref|YP_002520740.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
gi|221162696|gb|ACM03667.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
Length = 77
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D
Sbjct: 10 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 66 NGRESATNLVL 76
>gi|146280255|ref|YP_001170411.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC
17025]
gi|145558496|gb|ABP73106.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC
17025]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ VT+D + D
Sbjct: 1 MANGTVKWFNATKGFGFIAPTG---GSKDVFVHVTALERAGIRQLNDGQTVTFDL-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|15923806|ref|NP_371340.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50]
gi|15926469|ref|NP_374002.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315]
gi|21282499|ref|NP_645587.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2]
gi|49483048|ref|YP_040272.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
gi|49485662|ref|YP_042883.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650136|ref|YP_185734.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus COL]
gi|82750501|ref|YP_416242.1| cold-shock protein C [Staphylococcus aureus RF122]
gi|87161313|ref|YP_493477.1| cold shock protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194578|ref|YP_499374.1| hypothetical protein SAOUHSC_00819 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267252|ref|YP_001246195.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
aureus subsp. aureus JH9]
gi|150393301|ref|YP_001315976.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|151220973|ref|YP_001331795.1| cold-shock protein CSD family protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979143|ref|YP_001441402.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3]
gi|161509065|ref|YP_001574724.1| cold-shock protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221141194|ref|ZP_03565687.1| cold-shock protein [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253316731|ref|ZP_04839944.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253731424|ref|ZP_04865589.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253732760|ref|ZP_04866925.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130]
gi|255005605|ref|ZP_05144206.2| cold shock protein [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257424912|ref|ZP_05601339.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427580|ref|ZP_05603979.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430213|ref|ZP_05606596.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397]
gi|257432912|ref|ZP_05609272.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410]
gi|257435816|ref|ZP_05611864.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876]
gi|257794886|ref|ZP_05643865.1| cold shock protein [Staphylococcus aureus A9781]
gi|258418202|ref|ZP_05682467.1| cold shock protein [Staphylococcus aureus A9763]
gi|258421499|ref|ZP_05684424.1| cold-shock protein [Staphylococcus aureus A9719]
gi|258423441|ref|ZP_05686332.1| cold shock protein [Staphylococcus aureus A9635]
gi|258439159|ref|ZP_05690203.1| cold-shock protein C [Staphylococcus aureus A9299]
gi|258440913|ref|ZP_05690748.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115]
gi|258445743|ref|ZP_05693920.1| cold-shock protein C [Staphylococcus aureus A6300]
gi|258449556|ref|ZP_05697658.1| cold-shock protein CSD family protein [Staphylococcus aureus
A6224]
gi|258452159|ref|ZP_05700175.1| cold-shock protein CSD family protein [Staphylococcus aureus
A5948]
gi|258453956|ref|ZP_05701928.1| cold-shock protein C [Staphylococcus aureus A5937]
gi|262050053|ref|ZP_06022910.1| cold-shock protein C [Staphylococcus aureus D30]
gi|262053165|ref|ZP_06025326.1| cold-shock protein C [Staphylococcus aureus 930918-3]
gi|269202417|ref|YP_003281686.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus ED98]
gi|282894625|ref|ZP_06302852.1| cold shock protein cspC [Staphylococcus aureus A8117]
gi|282903424|ref|ZP_06311315.1| conserved domain protein [Staphylococcus aureus subsp. aureus
C160]
gi|282905203|ref|ZP_06313060.1| cold shock protein beta-ribbon CspA family protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282908183|ref|ZP_06316014.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910439|ref|ZP_06318243.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282913636|ref|ZP_06321425.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282916136|ref|ZP_06323899.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
gi|282918587|ref|ZP_06326324.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
gi|282923553|ref|ZP_06331233.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus
C101]
gi|282926148|ref|ZP_06333783.1| cold shock-like protein cspC [Staphylococcus aureus A9765]
gi|282926662|ref|ZP_06334292.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A10102]
gi|283769955|ref|ZP_06342847.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19]
gi|283957625|ref|ZP_06375078.1| conserved domain protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284023816|ref|ZP_06378214.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus 132]
gi|293500678|ref|ZP_06666529.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509628|ref|ZP_06668339.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus M809]
gi|293524214|ref|ZP_06670901.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|294850139|ref|ZP_06790875.1| cold shock protein [Staphylococcus aureus A9754]
gi|295406518|ref|ZP_06816324.1| cold shock-like protein cspC [Staphylococcus aureus A8819]
gi|295427371|ref|ZP_06820006.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297208480|ref|ZP_06924909.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245243|ref|ZP_06929117.1| cold shock-like protein cspC [Staphylococcus aureus A8796]
gi|297590271|ref|ZP_06948910.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
gi|300912553|ref|ZP_07129996.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
TCH70]
gi|304381582|ref|ZP_07364232.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|2226349|gb|AAB61744.1| CspC [Staphylococcus aureus RN4220]
gi|13700683|dbj|BAB41980.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315]
gi|14246585|dbj|BAB56978.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50]
gi|21203936|dbj|BAB94635.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2]
gi|49241177|emb|CAG39856.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244105|emb|CAG42531.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284322|gb|AAW36416.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
aureus COL]
gi|82656032|emb|CAI80437.1| cold-shock protein C [Staphylococcus aureus RF122]
gi|87127287|gb|ABD21801.1| cold shock protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202136|gb|ABD29946.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147740321|gb|ABQ48619.1| cold-shock DNA-binding protein family [Staphylococcus aureus
subsp. aureus JH9]
gi|149945753|gb|ABR51689.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|150373773|dbj|BAF67033.1| cold-shock protein CSD family protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721278|dbj|BAF77695.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3]
gi|160367874|gb|ABX28845.1| cold-shock protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724824|gb|EES93553.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253729280|gb|EES98009.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130]
gi|257272482|gb|EEV04605.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275773|gb|EEV07246.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278990|gb|EEV09601.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397]
gi|257282327|gb|EEV12462.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410]
gi|257285007|gb|EEV15126.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876]
gi|257788858|gb|EEV27198.1| cold shock protein [Staphylococcus aureus A9781]
gi|257838995|gb|EEV63474.1| cold shock protein [Staphylococcus aureus A9763]
gi|257842425|gb|EEV66849.1| cold-shock protein [Staphylococcus aureus A9719]
gi|257846502|gb|EEV70525.1| cold shock protein [Staphylococcus aureus A9635]
gi|257847731|gb|EEV71728.1| cold-shock protein C [Staphylococcus aureus A9299]
gi|257852427|gb|EEV76348.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115]
gi|257855319|gb|EEV78257.1| cold-shock protein C [Staphylococcus aureus A6300]
gi|257857064|gb|EEV79963.1| cold-shock protein CSD family protein [Staphylococcus aureus
A6224]
gi|257860374|gb|EEV83206.1| cold-shock protein CSD family protein [Staphylococcus aureus
A5948]
gi|257863821|gb|EEV86577.1| cold-shock protein C [Staphylococcus aureus A5937]
gi|259158935|gb|EEW44018.1| cold-shock protein C [Staphylococcus aureus 930918-3]
gi|259161849|gb|EEW46434.1| cold-shock protein C [Staphylococcus aureus D30]
gi|262074707|gb|ACY10680.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269940369|emb|CBI48746.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282314421|gb|EFB44811.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus
C101]
gi|282317721|gb|EFB48093.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
gi|282320084|gb|EFB50431.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
gi|282322668|gb|EFB52990.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282325831|gb|EFB56139.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327848|gb|EFB58130.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331610|gb|EFB61122.1| cold shock protein beta-ribbon CspA family protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282591555|gb|EFB96627.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A10102]
gi|282592289|gb|EFB97306.1| cold shock-like protein cspC [Staphylococcus aureus A9765]
gi|282596379|gb|EFC01340.1| conserved domain protein [Staphylococcus aureus subsp. aureus
C160]
gi|282762902|gb|EFC03035.1| cold shock protein cspC [Staphylococcus aureus A8117]
gi|283460102|gb|EFC07192.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19]
gi|283470089|emb|CAQ49300.1| conserved domain protein [Staphylococcus aureus subsp. aureus
ST398]
gi|283791076|gb|EFC29891.1| conserved domain protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285816495|gb|ADC36982.1| Cold shock protein CspC [Staphylococcus aureus 04-02981]
gi|290921177|gb|EFD98238.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|291095683|gb|EFE25944.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467725|gb|EFF10240.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus M809]
gi|294822913|gb|EFG39346.1| cold shock protein [Staphylococcus aureus A9754]
gi|294968663|gb|EFG44686.1| cold shock-like protein cspC [Staphylococcus aureus A8819]
gi|295128759|gb|EFG58390.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296886735|gb|EFH25639.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177914|gb|EFH37163.1| cold shock-like protein cspC [Staphylococcus aureus A8796]
gi|297576570|gb|EFH95285.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
gi|298694126|gb|ADI97348.1| cold-shock protein C [Staphylococcus aureus subsp. aureus ED133]
gi|300886799|gb|EFK82001.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
TCH70]
gi|302332502|gb|ADL22695.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302750688|gb|ADL64865.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304339945|gb|EFM05889.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438777|gb|ADQ77848.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
TCH60]
gi|315128997|gb|EFT84994.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS03]
gi|315194411|gb|EFU24803.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS00]
gi|315196274|gb|EFU26628.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS01]
gi|320140093|gb|EFW31953.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320141733|gb|EFW33562.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323438537|gb|EGA96285.1| cold-shock protein C [Staphylococcus aureus O11]
gi|323441972|gb|EGA99609.1| cold-shock protein C [Staphylococcus aureus O46]
gi|329313533|gb|AEB87946.1| Cold-shock DNA-binding protein family [Staphylococcus aureus
subsp. aureus T0131]
gi|329724582|gb|EGG61089.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 21172]
gi|329726262|gb|EGG62732.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 21189]
gi|329733929|gb|EGG70251.1| major cold shock protein CspA [Staphylococcus aureus subsp.
aureus 21193]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D
Sbjct: 1 MNNGTVKWFNAEKGFGFIERED----GSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--EQAANV 63
>gi|295677335|ref|YP_003605859.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
gi|295437178|gb|ADG16348.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + S G +L E Q V+++ +
Sbjct: 1 METGVVKWFNDAKGFGFITSD---AGGEDLFAHFSEIRSEGFKSLKENQRVSFEVKTSPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQPL 67
>gi|170745312|ref|YP_001766769.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170658913|gb|ACB27967.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ V+Y+ +
Sbjct: 1 MTIGTVKWFNDTKGFGFIQPDD---GGKDVFVHISAVERAGMQGLNEGQKVSYEMETDRR 57
Query: 62 NGKYSAENLK 71
GK SA +L+
Sbjct: 58 TGKQSAGSLQ 67
>gi|163853561|ref|YP_001641604.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218532421|ref|YP_002423237.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240140980|ref|YP_002965460.1| DNA-binding transcriptional repressor [Methylobacterium
extorquens AM1]
gi|254563491|ref|YP_003070586.1| DNA-binding transcriptional repressor [Methylobacterium
extorquens DM4]
gi|163665166|gb|ABY32533.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|218524724|gb|ACK85309.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|240010957|gb|ACS42183.1| DNA-binding transcriptional repressor [Methylobacterium
extorquens AM1]
gi|254270769|emb|CAX26774.1| DNA-binding transcriptional repressor [Methylobacterium
extorquens DM4]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVF+H SAV AGL LTEGQ V+Y+ +
Sbjct: 1 MSIGTVKWFNEQKGFGFIQPED---GSKDVFVHISAVERAGLRGLTEGQKVSYEMETDRR 57
Query: 62 NGKYSAENLKL 72
+GK SA L++
Sbjct: 58 SGKQSAGQLQV 68
>gi|90420715|ref|ZP_01228621.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
gi|90335006|gb|EAS48767.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
Length = 70
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI+P+ G DVF+H S+V +G+ +LTE Q V++D +
Sbjct: 1 MAQTGTVKFFNMDKGFGFISPD---AGGSDVFVHISSVERSGMTSLTENQKVSFDTEPDP 57
Query: 61 ANGKYSAENLKL 72
A N++
Sbjct: 58 RGKGPKAVNIQP 69
>gi|16801058|ref|NP_471326.1| hypothetical protein lin1992 [Listeria innocua Clip11262]
gi|16803918|ref|NP_465403.1| hypothetical protein lmo1879 [Listeria monocytogenes EGD-e]
gi|46908111|ref|YP_014500.1| cold-shock domain-contain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|116873314|ref|YP_850095.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|217963969|ref|YP_002349647.1| hypothetical protein LMHCC_0678 [Listeria monocytogenes HCC23]
gi|224500231|ref|ZP_03668580.1| hypothetical protein LmonF1_11339 [Listeria monocytogenes Finland
1988]
gi|224501322|ref|ZP_03669629.1| hypothetical protein LmonFR_02165 [Listeria monocytogenes FSL
R2-561]
gi|226224482|ref|YP_002758589.1| cold shock protein [Listeria monocytogenes Clip81459]
gi|254826079|ref|ZP_05231080.1| cspD [Listeria monocytogenes FSL J1-194]
gi|254827237|ref|ZP_05231924.1| cspD [Listeria monocytogenes FSL N3-165]
gi|254831521|ref|ZP_05236176.1| cold shock protein [Listeria monocytogenes 10403S]
gi|254852782|ref|ZP_05242130.1| cspD [Listeria monocytogenes FSL R2-503]
gi|254899425|ref|ZP_05259349.1| cold shock protein [Listeria monocytogenes J0161]
gi|254912436|ref|ZP_05262448.1| cspD [Listeria monocytogenes J2818]
gi|254931951|ref|ZP_05265310.1| cspD [Listeria monocytogenes HPB2262]
gi|254936763|ref|ZP_05268460.1| cspD [Listeria monocytogenes F6900]
gi|254992229|ref|ZP_05274419.1| cold shock protein [Listeria monocytogenes FSL J2-064]
gi|255025065|ref|ZP_05297051.1| cold shock protein [Listeria monocytogenes FSL J1-208]
gi|255521585|ref|ZP_05388822.1| cold shock protein [Listeria monocytogenes FSL J1-175]
gi|284802324|ref|YP_003414189.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578]
gi|284995466|ref|YP_003417234.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923]
gi|289435225|ref|YP_003465097.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290892995|ref|ZP_06555984.1| cspD protein [Listeria monocytogenes FSL J2-071]
gi|300763811|ref|ZP_07073808.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL
N1-017]
gi|315282896|ref|ZP_07871202.1| conserved domain protein [Listeria marthii FSL S4-120]
gi|16411332|emb|CAC99957.1| cspD [Listeria monocytogenes EGD-e]
gi|16414493|emb|CAC97222.1| cspD [Listeria innocua Clip11262]
gi|46881381|gb|AAT04677.1| cold-shock domain family protein [Listeria monocytogenes serotype
4b str. F2365]
gi|116742192|emb|CAK21316.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|217333239|gb|ACK39033.1| conserved domain protein [Listeria monocytogenes HCC23]
gi|225876944|emb|CAS05653.1| Putative cold shock protein [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258599620|gb|EEW12945.1| cspD [Listeria monocytogenes FSL N3-165]
gi|258606109|gb|EEW18717.1| cspD [Listeria monocytogenes FSL R2-503]
gi|258609359|gb|EEW21967.1| cspD [Listeria monocytogenes F6900]
gi|284057886|gb|ADB68827.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578]
gi|284060933|gb|ADB71872.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923]
gi|289171469|emb|CBH28013.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290557355|gb|EFD90880.1| cspD protein [Listeria monocytogenes FSL J2-071]
gi|293583503|gb|EFF95535.1| cspD [Listeria monocytogenes HPB2262]
gi|293590418|gb|EFF98752.1| cspD [Listeria monocytogenes J2818]
gi|293595320|gb|EFG03081.1| cspD [Listeria monocytogenes FSL J1-194]
gi|300515547|gb|EFK42597.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL
N1-017]
gi|307571461|emb|CAR84640.1| cold-shock domain family protein [Listeria monocytogenes L99]
gi|313608061|gb|EFR84139.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
gi|313613460|gb|EFR87298.1| conserved domain protein [Listeria marthii FSL S4-120]
gi|313618218|gb|EFR90291.1| conserved domain protein [Listeria innocua FSL S4-378]
gi|313623202|gb|EFR93457.1| conserved domain protein [Listeria innocua FSL J1-023]
gi|313632692|gb|EFR99666.1| conserved domain protein [Listeria seeligeri FSL N1-067]
gi|313637242|gb|EFS02750.1| conserved domain protein [Listeria seeligeri FSL S4-171]
gi|328466229|gb|EGF37386.1| cold shock protein CspD [Listeria monocytogenes 1816]
gi|328473596|gb|EGF44433.1| cold shock protein CspD [Listeria monocytogenes 220]
gi|332312320|gb|EGJ25415.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott
A]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI + G+D+F+H +A+ G +L EGQ VT++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIESD----GGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVEK 65
>gi|119384797|ref|YP_915853.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119374564|gb|ABL70157.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE D+F+H SAV AG+ L +GQ V++D + D
Sbjct: 1 MANGTVKWFNSAKGFGFIQPES---GSKDIFVHISAVERAGIHQLNDGQAVSFDL-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRDSATNLVL 67
>gi|298292419|ref|YP_003694358.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296928930|gb|ADH89739.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 71
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N +KGYGFI P+ G DVF+H SAV +GL L EGQ V+++ +
Sbjct: 1 MATMGTVKFFNTEKGYGFIRPDD---GGRDVFVHVSAVTRSGLGTLAEGQRVSFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A +L+L
Sbjct: 58 RGKGPKAIDLQL 69
>gi|92117563|ref|YP_577292.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800457|gb|ABE62832.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N
Sbjct: 1 MATGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENL++
Sbjct: 56 KGKTSAENLRV 66
>gi|116671146|ref|YP_832079.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
FB24]
gi|220913078|ref|YP_002488387.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|116611255|gb|ABK03979.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
gi|219859956|gb|ACL40298.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ S DVF+H S + + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDS---DGDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 57
Query: 62 NGKYSAENLKLV 73
A + LV
Sbjct: 58 G--PQATGVTLV 67
>gi|295697365|ref|YP_003590603.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
gi|295412967|gb|ADG07459.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+NPDKGYGFI+ E G+DVF+H SA+ S G L+EGQLV +D VQ
Sbjct: 2 QGRVKWFNPDKGYGFISRED----GEDVFVHYSAIQSQGFRTLSEGQLVEFDIVQGARG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -PQAANV 62
>gi|189485194|ref|YP_001956135.1| cold shock RNA chaperon protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287153|dbj|BAG13674.1| cold shock RNA chaperon protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KGYGFI+ + DVF H SA+ S G +L EG V ++ V +D
Sbjct: 1 MAQGKVKWFNDQKGYGFISNDD---GSGDVFAHYSAIQSDGFKSLAEGDSVEFEIVNSDK 57
Query: 62 NGKYSAENLKLV 73
K A N+K +
Sbjct: 58 GPK--AANIKKI 67
>gi|168185844|ref|ZP_02620479.1| conserved domain protein [Clostridium botulinum C str. Eklund]
gi|253681085|ref|ZP_04861888.1| conserved domain protein [Clostridium botulinum D str. 1873]
gi|331270523|ref|YP_004397015.1| major cold shock protein [Clostridium botulinum BKT015925]
gi|169296006|gb|EDS78139.1| conserved domain protein [Clostridium botulinum C str. Eklund]
gi|253562934|gb|EES92380.1| conserved domain protein [Clostridium botulinum D str. 1873]
gi|329127073|gb|AEB77018.1| major cold shock protein [Clostridium botulinum BKT015925]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ E DDVF+H SA+ G L EGQ V ++ +
Sbjct: 1 MKTGIVKWFNAEKGFGFISVE----GEDDVFVHFSAIQGDGFKTLEEGQKVEFEVTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|116626278|ref|YP_828434.1| cold-shock DNA-binding protein family protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116229440|gb|ABJ88149.1| cold-shock DNA-binding protein family [Candidatus Solibacter
usitatus Ellin6076]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFI E G+DVF+H SA+ + G L EG V ++ +
Sbjct: 1 MKEKGTVKWFNAAKGYGFIQREN----GEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGP 56
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 57 KG--LQATNVT 65
>gi|110679166|ref|YP_682173.1| cold shock family protein-related protein, putative [Roseobacter
denitrificans OCh 114]
gi|163735034|ref|ZP_02142471.1| cold shock family protein-related protein, putative [Roseobacter
litoralis Och 149]
gi|109455282|gb|ABG31487.1| cold shock family protein-related protein, putative [Roseobacter
denitrificans OCh 114]
gi|161391816|gb|EDQ16148.1| cold shock family protein-related protein, putative [Roseobacter
litoralis Och 149]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG G DVF+H SAV +GL L + Q V ++ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADDQKVDFELTEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LKL+
Sbjct: 57 DGRQMASDLKLL 68
>gi|90410344|ref|ZP_01218360.1| Putative cold shock-like protein cspG [Photobacterium profundum
3TCK]
gi|90328585|gb|EAS44869.1| Putative cold shock-like protein cspG [Photobacterium profundum
3TCK]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+Y+ Q
Sbjct: 4 ATGTVKWFNEEKGFGFITQDN---GGADVFVHFRAITGDGFKTLAEGQKVSYETEQGPKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --LQAANVEAI 69
>gi|332162229|ref|YP_004298806.1| cold shock-like protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318606292|emb|CBY27790.1| cold shock protein CspD [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666459|gb|ADZ43103.1| cold shock-like protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860565|emb|CBX70864.1| cold shock-like protein cspD [Yersinia enterocolitica W22703]
Length = 85
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V + Q
Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFAVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|262274512|ref|ZP_06052323.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
gi|262221075|gb|EEY72389.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
Length = 73
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ D+F H S + G L GQ V Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPDEGEG---DIFAHYSTIQMDGYRTLKAGQTVNYEVQEGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
Y A + V +
Sbjct: 58 G--YHASQIVPVENDA 71
>gi|163839238|ref|YP_001623643.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
gi|162952714|gb|ABY22229.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT +G G DVF+H +A+ G +L EGQ V +D Q
Sbjct: 1 MAQGTVKWFNAEKGFGFITVDG---DGGDVFVHWAAIEMDGYRSLEEGQRVEFDIGQGQK 57
Query: 62 NGKYSAENLK 71
AE ++
Sbjct: 58 G--AQAEKVR 65
>gi|163736889|ref|ZP_02144307.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
BS107]
gi|163740688|ref|ZP_02148082.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
2.10]
gi|161386546|gb|EDQ10921.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
2.10]
gi|161389493|gb|EDQ13844.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
BS107]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ +
Sbjct: 1 MANGTVKWFNATKGYGFIEPES---GGKDVFVHISAVERSGLNGLNDNQKVSYEL-ETGR 56
Query: 62 NGKYSAENLKLV 73
+GK SA +L+L+
Sbjct: 57 DGKQSAGSLELL 68
>gi|148257897|ref|YP_001242482.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|146410070|gb|ABQ38576.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P G D+F+H SAV AGL L EGQ + Y+ + N
Sbjct: 1 MAKGTVKWFNPTKGYGFIQPA---AGGKDIFVHISAVQKAGLTTLNEGQTIEYEEIAN-- 55
Query: 62 NGKYSAENLKL 72
G+ SAENLK+
Sbjct: 56 RGRSSAENLKV 66
>gi|332560384|ref|ZP_08414706.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
gi|332278096|gb|EGJ23411.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D
Sbjct: 1 MANGTVKWFNATKGFGFIAPAG---GSKDVFIHVTALERAGIRQLDDGQAVSFDL-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|309388512|gb|ADO76392.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
DSM 2228]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D
Sbjct: 1 MIYTGTVKWFDGKKGFGFIERED----GDDVFAHFSAIEEEGFKNLEEGQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 RG--PQAANIVKL 67
>gi|310826977|ref|YP_003959334.1| cold shock protein [Eubacterium limosum KIST612]
gi|308738711|gb|ADO36371.1| cold shock protein [Eubacterium limosum KIST612]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KG+GFI+ E GDDVF+H SA+ G L EGQ VT+D +
Sbjct: 1 MNKGTVKWFNSEKGFGFISRE----EGDDVFVHFSAITGDGFKTLNEGQEVTFDTEEGPR 56
Query: 62 NGKYSAENLKL 72
A+N+ +
Sbjct: 57 G--LQAKNVSV 65
>gi|227519332|ref|ZP_03949381.1| cold shock protein CspC [Enterococcus faecalis TX0104]
gi|227555460|ref|ZP_03985507.1| cold shock protein CspC [Enterococcus faecalis HH22]
gi|229545427|ref|ZP_04434152.1| cold shock protein CspC [Enterococcus faecalis TX1322]
gi|229549671|ref|ZP_04438396.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200]
gi|307268123|ref|ZP_07549510.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|307272817|ref|ZP_07554064.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|307275929|ref|ZP_07557062.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|307295893|ref|ZP_07575725.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|312902769|ref|ZP_07761973.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|312951269|ref|ZP_07770171.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|227073226|gb|EEI11189.1| cold shock protein CspC [Enterococcus faecalis TX0104]
gi|227175400|gb|EEI56372.1| cold shock protein CspC [Enterococcus faecalis HH22]
gi|229305151|gb|EEN71147.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200]
gi|229309463|gb|EEN75450.1| cold shock protein CspC [Enterococcus faecalis TX1322]
gi|306496224|gb|EFM65803.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|306507259|gb|EFM76396.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|306510431|gb|EFM79454.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|306515513|gb|EFM84041.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|310630803|gb|EFQ14086.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|310633823|gb|EFQ17106.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|315025996|gb|EFT37928.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
gi|315028917|gb|EFT40849.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
gi|315033307|gb|EFT45239.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
gi|315034545|gb|EFT46477.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
gi|315143420|gb|EFT87436.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
gi|315147653|gb|EFT91669.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
gi|315157261|gb|EFU01278.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
gi|315159904|gb|EFU03921.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
gi|315161387|gb|EFU05404.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
gi|315167485|gb|EFU11502.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
gi|315574539|gb|EFU86730.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
gi|315576700|gb|EFU88891.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
gi|315581819|gb|EFU94010.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
Length = 73
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ + G +L EGQ VT+D +
Sbjct: 8 MNNGTVKWFNSDKGFGFITGED----GNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQR 63
Query: 62 NGKYSAENL 70
A N+
Sbjct: 64 G--MQAVNI 70
>gi|110678721|ref|YP_681728.1| cold shock protein CspA-related protein, putative [Roseobacter
denitrificans OCh 114]
gi|109454837|gb|ABG31042.1| cold shock protein CspA-related protein, putative [Roseobacter
denitrificans OCh 114]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNATKGFGFIAPDG---GSKDVFVHISAVERAGLTGLNDDQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESASNLAL 67
>gi|288959551|ref|YP_003449892.1| cold shock protein [Azospirillum sp. B510]
gi|288911859|dbj|BAI73348.1| cold shock protein [Azospirillum sp. B510]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE DVF+H +AV +GL L+EGQ V ++ + +
Sbjct: 1 MTNGTVKWFNTTKGYGFIAPE---AGAKDVFVHITAVQRSGLHALSEGQRVQFEVARGN- 56
Query: 62 NGKYSAENLKLVP 74
NGK SA N+ +V
Sbjct: 57 NGKDSAVNISVVE 69
>gi|145225802|ref|YP_001136480.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315442494|ref|YP_004075373.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
gi|145218288|gb|ABP47692.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
PYR-GCK]
gi|315260797|gb|ADT97538.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
Length = 67
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI P+ ++ +DVF+H S++ +G +L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNGDKGFGFIAPDNAS---EDVFVHYSSITGSGFKSLDENQRVEFEIEQGAK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PQAVGVSAI 67
>gi|78222480|ref|YP_384227.1| cold-shock DNA-binding protein family protein [Geobacter
metallireducens GS-15]
gi|78193735|gb|ABB31502.1| cold-shock DNA-binding protein family [Geobacter metallireducens
GS-15]
Length = 66
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF+H SA+ S G L EG+ VT+D V
Sbjct: 1 MAQGKVKWFNDAKGFGFIEQEN----GEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPK 56
Query: 62 NGKYSAENLKL 72
A N+K
Sbjct: 57 G--LQAANVKK 65
>gi|127512493|ref|YP_001093690.1| cold-shock DNA-binding domain-containing protein [Shewanella
loihica PV-4]
gi|126637788|gb|ABO23431.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
Length = 68
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+DVF H S + G L GQ V ++ Q
Sbjct: 1 MANGTVKWFNNAKGFGFICPE---AGGEDVFAHYSTIEMEGYRTLKAGQSVQFEVEQGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|110635634|ref|YP_675842.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
BNC1]
gi|110286618|gb|ABG64677.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 69
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P+ DVF+H SAV AG+ + EGQ +++D V+++
Sbjct: 1 MTIGTVKFFNATKGFGFIQPDD---GAADVFVHISAVERAGMRTIVEGQKLSFDVVRDNR 57
Query: 62 NGKYSAENLK 71
+GK +AENL+
Sbjct: 58 SGKSAAENLQ 67
>gi|89101277|ref|ZP_01174096.1| cold-shock protein [Bacillus sp. NRRL B-14911]
gi|89084011|gb|EAR63193.1| cold-shock protein [Bacillus sp. NRRL B-14911]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIQGDGFKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|312144553|ref|YP_003995999.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
gi|311905204|gb|ADQ15645.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
'sapolanicus']
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M++ G +KW++ KGYGFI E GDDVF+H SA+ G L + Q V ++ V+ D
Sbjct: 1 MIYTGKVKWFDAKKGYGFIERED----GDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 57 RG--PQAENVVKL 67
>gi|300786398|ref|YP_003766689.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|299795912|gb|ADJ46287.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +GS+KW+N +KG+GFI +G G DVF+H S + +G +L EGQ V ++ Q
Sbjct: 1 MAQGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSEIQGSGFKSLDEGQRVEFEIGQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ + ++
Sbjct: 58 G--PQAQRVSVI 67
>gi|302520002|ref|ZP_07272344.1| cold shock protein B [Streptomyces sp. SPB78]
gi|318061816|ref|ZP_07980537.1| putative cold shock protein [Streptomyces sp. SA3_actG]
gi|318079283|ref|ZP_07986615.1| putative cold shock protein [Streptomyces sp. SA3_actF]
gi|302428897|gb|EFL00713.1| cold shock protein B [Streptomyces sp. SPB78]
Length = 127
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H SA+ + L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSALPQD-VETLKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + ++ + +
Sbjct: 56 GD--QALTVTVLDPTPS 70
>gi|150398072|ref|YP_001328539.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150029587|gb|ABR61704.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H SA+ G +L+EGQ V+Y+ Q+
Sbjct: 1 MATGTVKFFNGDKGFGFITPEN---GGTDVFVHVSALQEGG--SLSEGQRVSYEIGQDRK 55
Query: 62 NGKYSAENLKLVP 74
GK AEN++++
Sbjct: 56 TGKSRAENVRVLS 68
>gi|27375170|ref|NP_766699.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27348306|dbj|BAC45324.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 77
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+NP KGYGFI P+ G+DVF+H SAV AG +L EG V+Y+ V N +GK
Sbjct: 13 GTVKWFNPTKGYGFIAPDD---GGNDVFVHISAVEKAGYTSLVEGAKVSYELVMN-RSGK 68
Query: 65 YSAENLKL 72
+AENL+L
Sbjct: 69 QAAENLRL 76
>gi|30023224|ref|NP_834855.1| cold shock protein [Bacillus cereus ATCC 14579]
gi|47567403|ref|ZP_00238116.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|47568473|ref|ZP_00239173.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|47569297|ref|ZP_00239982.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|49188026|ref|YP_031279.1| cold shock protein CspC [Bacillus anthracis str. Sterne]
gi|49481145|ref|YP_039179.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52140373|ref|YP_086455.1| cold shock protein [Bacillus cereus E33L]
gi|65317162|ref|ZP_00390121.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
gi|75759030|ref|ZP_00739138.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|118480228|ref|YP_897379.1| cold-shock DNA-binding protein family protein [Bacillus
thuringiensis str. Al Hakam]
gi|163942875|ref|YP_001647759.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|165869975|ref|ZP_02214632.1| cold shock protein CspC [Bacillus anthracis str. A0488]
gi|167635267|ref|ZP_02393582.1| cold shock protein CspC [Bacillus anthracis str. A0442]
gi|167640473|ref|ZP_02398736.1| cold shock protein CspC [Bacillus anthracis str. A0193]
gi|170687914|ref|ZP_02879127.1| cold shock protein CspC [Bacillus anthracis str. A0465]
gi|170707764|ref|ZP_02898215.1| cold shock protein CspC [Bacillus anthracis str. A0389]
gi|177653014|ref|ZP_02935341.1| cold shock protein CspC [Bacillus anthracis str. A0174]
gi|190567802|ref|ZP_03020714.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I]
gi|196032913|ref|ZP_03100326.1| cold shock protein CspC [Bacillus cereus W]
gi|196045641|ref|ZP_03112871.1| cold shock protein CspC [Bacillus cereus 03BB108]
gi|206970208|ref|ZP_03231161.1| cold shock protein CspC [Bacillus cereus AH1134]
gi|218906366|ref|YP_002454200.1| cold shock protein CspC [Bacillus cereus AH820]
gi|225867154|ref|YP_002752532.1| cold shock protein CspC [Bacillus cereus 03BB102]
gi|228903664|ref|ZP_04067784.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL
4222]
gi|228930192|ref|ZP_04093201.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228936477|ref|ZP_04099275.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228942325|ref|ZP_04104864.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228948909|ref|ZP_04111182.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228961427|ref|ZP_04123040.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228975255|ref|ZP_04135813.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981893|ref|ZP_04142188.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis
Bt407]
gi|228988414|ref|ZP_04148505.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229014358|ref|ZP_04171477.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048]
gi|229082403|ref|ZP_04214866.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2]
gi|229094285|ref|ZP_04225361.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42]
gi|229124697|ref|ZP_04253878.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201]
gi|229130436|ref|ZP_04259393.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4]
gi|229147720|ref|ZP_04276063.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24]
gi|229153345|ref|ZP_04281523.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550]
gi|229175861|ref|ZP_04303359.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3]
gi|229187401|ref|ZP_04314544.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1]
gi|229193438|ref|ZP_04320385.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876]
gi|229602080|ref|YP_002869410.1| cold shock protein CspC [Bacillus anthracis str. A0248]
gi|254686386|ref|ZP_05150245.1| cold shock protein CspC [Bacillus anthracis str. CNEVA-9066]
gi|254744321|ref|ZP_05202001.1| cold shock protein CspC [Bacillus anthracis str. Kruger B]
gi|254755619|ref|ZP_05207652.1| cold shock protein CspC [Bacillus anthracis str. Vollum]
gi|254757074|ref|ZP_05209102.1| cold shock protein CspC [Bacillus anthracis str. Australia 94]
gi|296505610|ref|YP_003667310.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|29898784|gb|AAP12056.1| Cold shock protein [Bacillus cereus ATCC 14579]
gi|47554068|gb|EAL12434.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|47554864|gb|EAL13215.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|47556024|gb|EAL14362.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|49181953|gb|AAT57329.1| cold shock protein CspC [Bacillus anthracis str. Sterne]
gi|49332701|gb|AAT63347.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51973842|gb|AAU15392.1| cold shock protein [Bacillus cereus E33L]
gi|74493496|gb|EAO56604.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|118419453|gb|ABK87872.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
str. Al Hakam]
gi|163865072|gb|ABY46131.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
gi|164714298|gb|EDR19818.1| cold shock protein CspC [Bacillus anthracis str. A0488]
gi|167511516|gb|EDR86899.1| cold shock protein CspC [Bacillus anthracis str. A0193]
gi|167529310|gb|EDR92062.1| cold shock protein CspC [Bacillus anthracis str. A0442]
gi|170127321|gb|EDS96197.1| cold shock protein CspC [Bacillus anthracis str. A0389]
gi|170668023|gb|EDT18773.1| cold shock protein CspC [Bacillus anthracis str. A0465]
gi|172081789|gb|EDT66859.1| cold shock protein CspC [Bacillus anthracis str. A0174]
gi|190561218|gb|EDV15191.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I]
gi|195994342|gb|EDX58297.1| cold shock protein CspC [Bacillus cereus W]
gi|196023472|gb|EDX62149.1| cold shock protein CspC [Bacillus cereus 03BB108]
gi|206734785|gb|EDZ51954.1| cold shock protein CspC [Bacillus cereus AH1134]
gi|218536289|gb|ACK88687.1| cold shock protein CspC [Bacillus cereus AH820]
gi|225789362|gb|ACO29579.1| cold shock protein CspC [Bacillus cereus 03BB102]
gi|228589970|gb|EEK47842.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876]
gi|228596105|gb|EEK53782.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1]
gi|228607594|gb|EEK64918.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3]
gi|228629949|gb|EEK86600.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550]
gi|228635733|gb|EEK92220.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24]
gi|228653031|gb|EEL08912.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4]
gi|228658792|gb|EEL14451.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201]
gi|228689138|gb|EEL42961.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42]
gi|228700835|gb|EEL53358.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2]
gi|228746958|gb|EEL96842.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048]
gi|228771270|gb|EEM19745.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228778005|gb|EEM26277.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis
Bt407]
gi|228784534|gb|EEM32555.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228798241|gb|EEM45241.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228810665|gb|EEM57013.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228817369|gb|EEM63455.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228823309|gb|EEM69143.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228829477|gb|EEM75105.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228855932|gb|EEN00472.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL
4222]
gi|229266488|gb|ACQ48125.1| cold shock protein CspC [Bacillus anthracis str. A0248]
gi|296326662|gb|ADH09590.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|326942978|gb|AEA18874.1| cold shock protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V +
Sbjct: 1 MNMQGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55
Query: 61 ANGKYSAENLKL 72
A G +A +KL
Sbjct: 56 ARGPQAANVVKL 67
>gi|323493244|ref|ZP_08098373.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546]
gi|323312510|gb|EGA65645.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546]
Length = 73
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDVFAHYSTIKMDGYRTLKAGQQVNFEVEEGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
Y A ++ V
Sbjct: 58 G--YHASSVVPVEAQP 71
>gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [Mycobacterium kansasii ATCC 12478]
gi|254821833|ref|ZP_05226834.1| putative cold shock protein A [Mycobacterium intracellulare ATCC
13950]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + +G L E Q V ++ +
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGSGFRTLEENQKVEFEIGHSPK 57
Query: 62 NGKYSAENLK 71
A ++
Sbjct: 58 G--PQATGVR 65
>gi|182677655|ref|YP_001831801.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182633538|gb|ACB94312.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 70
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++K++N DKGYGFI P+ G D+F+H +AV AGL L EGQ ++Y+ +
Sbjct: 1 MSQQGTVKFFNSDKGYGFIKPDD---GGRDIFVHITAVERAGLQALNEGQRLSYEIEPDK 57
Query: 61 ANGKYSAENLKL 72
A +LK+
Sbjct: 58 KGKGPKAVDLKV 69
>gi|119898412|ref|YP_933625.1| cold shock-like protein [Azoarcus sp. BH72]
gi|119670825|emb|CAL94738.1| cold shock-like protein [Azoarcus sp. BH72]
Length = 69
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFITPE GDD+F H S + S+G +L E Q V ++
Sbjct: 4 QTGTVKWFNDAKGFGFITPEN---GGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKG 60
Query: 63 GKYSAENLKLV 73
A ++ +
Sbjct: 61 --LQAAKIRPL 69
>gi|92118857|ref|YP_578586.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91801751|gb|ABE64126.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N
Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|51244812|ref|YP_064696.1| cold-shock protein [Desulfotalea psychrophila LSv54]
gi|50875849|emb|CAG35689.1| probable cold-shock protein [Desulfotalea psychrophila LSv54]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E GDD+F+H S+++ G L EG V++D Q
Sbjct: 1 MAEGTVKWFNDAKGFGFIEQE----GGDDLFVHYSSISGEGFKTLQEGTRVSFDIEQGPK 56
Query: 62 NGKYSAENLKLV 73
+A N+ ++
Sbjct: 57 G--PAAANVVVL 66
>gi|308049700|ref|YP_003913266.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
9799]
gi|307631890|gb|ADN76192.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
9799]
Length = 69
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PEG G+DVF H S + G L GQ+V ++
Sbjct: 1 MAQGTVKWFNNAKGFGFICPEG---GGEDVFAHYSTIEMEGYRTLKAGQVVEFEMEAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 G--MHASNIQPV 67
>gi|294498468|ref|YP_003562168.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295703813|ref|YP_003596888.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294348405|gb|ADE68734.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294801472|gb|ADF38538.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MEHGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQGQR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|194290614|ref|YP_002006521.1| cold shock protein, RNA chaperone, transcription antiterminator,
affects expression of rpos and uspa [Cupriavidus
taiwanensis LMG 19424]
gi|193224449|emb|CAQ70460.1| cold shock protein, RNA chaperone, transcription antiterminator,
affects expression of rpoS and uspA [Cupriavidus
taiwanensis LMG 19424]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ +++F H SA+ AG L EGQ V+++ VQ
Sbjct: 1 MASGIVKWFNDAKGFGFIKPDEGE---EELFAHFSAIQMAGFKTLKEGQRVSFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|188591773|ref|YP_001796372.1| major cold shock protein [Cupriavidus taiwanensis]
gi|170939168|emb|CAP64206.1| major cold shock protein [Cupriavidus taiwanensis LMG 19424]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITP+ G D+F H + AG +L EG V ++ Q
Sbjct: 1 MATGIVKWFNSEKGYGFITPDD---GGKDLFAHYKEIQGAGFKSLEEGAKVEFEITQGMK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQASKIRKL 67
>gi|187925980|ref|YP_001892325.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|241665465|ref|YP_002983824.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|187727734|gb|ACD28898.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|240867492|gb|ACS65152.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G D+F H S + +G L +GQ V+++ Q
Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 58 G--LQASGIRP 66
>gi|113869008|ref|YP_727497.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|113527784|emb|CAJ94129.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ +++F H SA+ +G L EGQ V+++ VQ
Sbjct: 1 MASGIVKWFNDAKGFGFIKPDEGE---EELFAHFSAIQMSGFKTLKEGQRVSFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|227509828|ref|ZP_03939877.1| CspA family cold shock transcriptional regulator [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227512764|ref|ZP_03942813.1| CspA family cold shock transcriptional regulator [Lactobacillus
buchneri ATCC 11577]
gi|227522888|ref|ZP_03952937.1| CspA family cold shock transcriptional regulator [Lactobacillus
hilgardii ATCC 8290]
gi|227083964|gb|EEI19276.1| CspA family cold shock transcriptional regulator [Lactobacillus
buchneri ATCC 11577]
gi|227089917|gb|EEI25229.1| CspA family cold shock transcriptional regulator [Lactobacillus
hilgardii ATCC 8290]
gi|227190752|gb|EEI70819.1| CspA family cold shock transcriptional regulator [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKGYGFIT E G DVF+H SA+ + G L EGQ VT D + D
Sbjct: 1 MEQGTVKWFNGDKGYGFITLEN----GSDVFVHFSAINADGFKTLEEGQKVTLDVEKGDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQAANVTP 65
>gi|261343563|ref|ZP_05971208.1| conserved domain protein [Providencia rustigianii DSM 4541]
gi|282568712|gb|EFB74247.1| conserved domain protein [Providencia rustigianii DSM 4541]
Length = 69
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++ +
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAITSDGFKTLAEGQRVEFEITEGPKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|154251388|ref|YP_001412212.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154155338|gb|ABS62555.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI P G D+F+H SAV AG +L EGQ + Y+ V+
Sbjct: 1 MASGVVKWFNATKGYGFIAPAD---GGKDIFVHISAVERAGQKSLQEGQQIQYELVEG-R 56
Query: 62 NGKYSAENLKL 72
NG++SAENL L
Sbjct: 57 NGRFSAENLVL 67
>gi|290510381|ref|ZP_06549751.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp.
1_1_55]
gi|289777097|gb|EFD85095.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp.
1_1_55]
Length = 97
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 33 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 88
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 89 -PSAANVMAI 97
>gi|159044762|ref|YP_001533556.1| putative cold-shock DNA-binding domain-containing protein
[Dinoroseobacter shibae DFL 12]
gi|157912522|gb|ABV93955.1| putative cold-shock DNA-binding domain protein [Dinoroseobacter
shibae DFL 12]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G DVF+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNETKGYGFIAPDG---GSRDVFVHISAVERAGLTGLKDNQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESATNIVL 67
>gi|261252479|ref|ZP_05945052.1| cold shock protein CspD [Vibrio orientalis CIP 102891]
gi|260935870|gb|EEX91859.1| cold shock protein CspD [Vibrio orientalis CIP 102891]
Length = 73
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI EG DVF H S + G L GQ V ++ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSEG---EDGDVFAHYSTIKMDGYRTLKAGQQVNFEVEEGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
Y A + V
Sbjct: 58 G--YHASVVTPVEAQP 71
>gi|254461151|ref|ZP_05074567.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium HTCC2083]
gi|206677740|gb|EDZ42227.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
bacterium HTCC2083]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+DVF+H SAV +GL L + Q ++++ ++
Sbjct: 1 MPNGTVKWFNTTKGFGFIEPEG---GGNDVFVHISAVERSGLTGLADNQKISFEL-EDGR 56
Query: 62 NGKYSAENLKLV 73
+G+ A NL L+
Sbjct: 57 DGRQMAANLALL 68
>gi|163791280|ref|ZP_02185694.1| cold-shock domain family protein [Carnobacterium sp. AT7]
gi|159873421|gb|EDP67511.1| cold-shock domain family protein [Carnobacterium sp. AT7]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DDVF+H SA+ + G +L EGQ VT+D + +
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----GADDVFVHFSAIQTDGFKSLEEGQTVTFDVEEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVNK 65
>gi|294678414|ref|YP_003579029.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
gi|294477234|gb|ADE86622.1| cold shock protein CspA-3 [Rhodobacter capsulatus SB 1003]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVF+H +A+ AGL L +GQ V++D + D
Sbjct: 1 MANGTVKWFNAIKGFGFIAPES---GTKDVFVHVTALERAGLRGLNDGQAVSFDL-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|288941930|ref|YP_003444170.1| cold-shock DNA-binding domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288897302|gb|ADC63138.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
180]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGF+ PEG +DVF+H S++ G L EGQ V ++ +
Sbjct: 1 MITGIVKWFNNAKGYGFVQPEGRE---EDVFVHFSSIDMDGYKTLREGQKVEFELSEGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 58 G--LHAANVHRV 67
>gi|194293032|ref|YP_002008939.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
gi|193226936|emb|CAQ72887.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ GDD+F H S + + G +L E Q V ++
Sbjct: 1 MQTGIVKWFNDAKGFGFIKPD---AGGDDLFAHFSEIRAEGFKSLQENQRVQFEVKNGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--LQAANITPL 67
>gi|218778358|ref|YP_002429676.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
gi|218759742|gb|ACL02208.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI E G DVF+H SA++ +G L EG V++D +
Sbjct: 1 MANGTVKWFNDSKGYGFIERE----EGGDVFVHYSAISGSGFKTLAEGDRVSFDVEEGQK 56
Query: 62 NGKYSAENLKL 72
G +A +KL
Sbjct: 57 -GPAAANVIKL 66
>gi|163816662|ref|ZP_02208025.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC
27759]
gi|158447919|gb|EDP24914.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC
27759]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI E G DVF+H SA+ G L EG V Y+ V +
Sbjct: 1 MKTGKVKWFNAKKGYGFICDED----GTDVFVHFSALNMEGFKALEEGDTVEYEVVDGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|110634484|ref|YP_674692.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
BNC1]
gi|110285468|gb|ABG63527.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 70
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFITP+ DVF+H SAV ++GL L +GQ VT+D +
Sbjct: 1 MPQSGTVKFFNHAKGFGFITPDD---GQKDVFVHISAVQASGLPGLEDGQKVTFDTEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 RGKGPKAVNLTI 69
>gi|27383360|ref|NP_774889.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27356535|dbj|BAC53514.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KGYGFI P+ G+DVF+H SAV AG +L EG V++D V+N
Sbjct: 1 MAIGTVKWFNPTKGYGFIQPDS---GGNDVFVHISAVEKAGFTSLAEGAKVSFDIVKN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENL++
Sbjct: 56 RGKESAENLRI 66
>gi|331700130|ref|YP_004336369.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326954819|gb|AEA28516.1| cold-shock DNA-binding domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G G DVF+H S + ++G +L EGQ V ++ Q
Sbjct: 1 MAQGTVKWFNGEKGFGFIQQDG---GGADVFVHYSEIDASGFRSLDEGQRVEFEVGQGKK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRPL 67
>gi|149276323|ref|ZP_01882467.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
gi|149232843|gb|EDM38218.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N KG+GFITPE G D+F+H SA+A L EG V ++ ND
Sbjct: 1 MRTTGKVKWFNSAKGFGFITPEN---GGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55
Query: 61 ANGKYSAENLKLV 73
A N+ ++
Sbjct: 56 GKKGPEAANVTVL 68
>gi|149196184|ref|ZP_01873239.1| stress protein, member of the CspA-family [Lentisphaera araneosa
HTCC2155]
gi|149140445|gb|EDM28843.1| stress protein, member of the CspA-family [Lentisphaera araneosa
HTCC2155]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFI + G DVF+H SA+ G L EGQ V +D
Sbjct: 5 QGRVKWFNETKGFGFIEQD----GGKDVFVHFSAIQGQGFKTLEEGQKVEFDVEDGQKG- 59
Query: 64 KYSAENLKLV 73
A NL ++
Sbjct: 60 -PQAVNLTVL 68
>gi|16079252|ref|NP_390076.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus subtilis subsp. subtilis str. 168]
gi|221310107|ref|ZP_03591954.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221314429|ref|ZP_03596234.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221319351|ref|ZP_03600645.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323627|ref|ZP_03604921.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY]
gi|321311659|ref|YP_004203946.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus subtilis BSn5]
gi|1706171|sp|P51777|CSPD_BACSU RecName: Full=Cold shock protein CspD
gi|1256629|gb|AAA96623.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2634613|emb|CAB14111.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus subtilis subsp. subtilis str. 168]
gi|291484613|dbj|BAI85688.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195]
gi|320017933|gb|ADV92919.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus subtilis BSn5]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNVVKL 66
>gi|330819200|ref|YP_004348062.1| Cold shock protein [Burkholderia gladioli BSR3]
gi|327371195|gb|AEA62550.1| Cold shock protein [Burkholderia gladioli BSR3]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ S DD+F H S + G +L EGQ V+++
Sbjct: 1 MDTGIVKWFNDSKGFGFIAPDNSK---DDLFAHFSEIRGDGFRSLVEGQRVSFETKMGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--LQASNIKAL 67
>gi|315651983|ref|ZP_07904985.1| cold shock protein Csp [Eubacterium saburreum DSM 3986]
gi|315485812|gb|EFU76192.1| cold shock protein Csp [Eubacterium saburreum DSM 3986]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++RG++KW+N KGYGFI+ E G+DVF+H S + G L EG V YD +
Sbjct: 1 MNRGTVKWFNNQKGYGFISDE----GGNDVFVHFSDLNMDGFKTLDEGNSVEYDLTEGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +V
Sbjct: 57 G--PQAVNVTVV 66
>gi|315221882|ref|ZP_07863794.1| cold-shock DNA-binding domain protein [Streptococcus anginosus
F0211]
gi|315189115|gb|EFU22818.1| cold-shock DNA-binding domain protein [Streptococcus anginosus
F0211]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ S G +L EG V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFISQEN----GPDVFAHFSAIQSDGFKSLNEGDKVMFNIEKGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAVNITTL 66
>gi|253990644|ref|YP_003042000.1| cold shock protein CspE [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782094|emb|CAQ85258.1| cold shock-like protein cspe [Photorhabdus asymbiotica]
Length = 79
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 15 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQKVEFEITDGAKG- 70
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 71 -PSAVNVVAI 79
>gi|297563005|ref|YP_003681979.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847453|gb|ADH69473.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI EG DVF+H SA++ G NL E Q VT+D +Q
Sbjct: 1 MAQGTVKWFNSEKGFGFIAVEG---GQPDVFVHYSAISGTGFRNLEEDQKVTFDIIQGPK 57
Query: 62 NGKYSAENLKLV 73
A ++K V
Sbjct: 58 G--PQAADVKAV 67
>gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
gi|296029683|gb|ADG80453.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P DDVF+H S + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPAD---GSDDVFVHYSEIQGNGFRTLEENQQVEFEVGQGTK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRAL 67
>gi|83944389|ref|ZP_00956843.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|83953430|ref|ZP_00962152.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|254486516|ref|ZP_05099721.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
gi|83842398|gb|EAP81566.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83844712|gb|EAP82595.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|214043385|gb|EEB84023.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESASNIAL 67
>gi|328957164|ref|YP_004374550.1| cold-shock protein [Carnobacterium sp. 17-4]
gi|328673488|gb|AEB29534.1| cold-shock protein [Carnobacterium sp. 17-4]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DDVF+H SA+ S G +L EGQ VT+D + +
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----GADDVFVHFSAIQSEGFKSLEEGQAVTFDVEEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVNK 65
>gi|307730691|ref|YP_003907915.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1003]
gi|323527027|ref|YP_004229180.1| cold-shock DNA-binding domain-containing protein [Burkholderia
sp. CCGE1001]
gi|307585226|gb|ADN58624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
gi|323384029|gb|ADX56120.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
Length = 67
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + + G +L E Q V++D
Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRTEGFKSLKENQRVSFDVKAGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQPL 67
>gi|207856095|ref|YP_002242746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|206707898|emb|CAR32186.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|301157230|emb|CBW16717.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
Length = 70
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 1 MV--HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
M+ +G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 1 MMSKIKGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITN 57
Query: 59 NDANGKYSAENLKLV 73
SA N+ +
Sbjct: 58 GAKG--PSAANVTAL 70
>gi|121631|sp|P27484|GRP2_NICSY RecName: Full=Glycine-rich protein 2
gi|19743|emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris]
Length = 214
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW++ KG+GFITP+ G+D+F+H+S + S G +L EG+ V ++ ++
Sbjct: 8 RAKGTVKWFSDQKGFGFITPDD---GGEDLFVHQSGIRSEGFRSLAEGETVEFEV-ESGG 63
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 64 DGRTKAVDVT 73
>gi|303233532|ref|ZP_07320194.1| cold shock protein CspA [Finegoldia magna BVS033A4]
gi|302495370|gb|EFL55114.1| cold shock protein CspA [Finegoldia magna BVS033A4]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT E D+F+H+SA+ G L EGQ V+YD +D
Sbjct: 1 MSNGTVKWFNSTKGFGFITGED----NKDIFVHQSAIQEDGFRTLEEGQKVSYDVEASDK 56
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 57 GDR--AVNVVKL 66
>gi|114765785|ref|ZP_01444880.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
gi|114541892|gb|EAU44928.1| cold shock family protein [Roseovarius sp. HTCC2601]
Length = 68
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L++ Q VTYD +
Sbjct: 1 MATGTVKWFNTTKGFGFIAPD---AGGKDVFVHISAVERAGLTGLSDDQKVTYDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESASNLAL 67
>gi|319653577|ref|ZP_08007676.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2]
gi|317394776|gb|EFV75515.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MENGKVKWFNSEKGFGFIERE----GGEDVFVHFSAIQGEGYKSLEEGQEVTFDVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVRK 65
>gi|307243261|ref|ZP_07525432.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM
17678]
gi|306493389|gb|EFM65371.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM
17678]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+ EG D+F+H SA+ G +L EGQ V ++ V +
Sbjct: 1 MKIGTVKWFNNEKGFGFISVEGEN----DMFVHFSAIQGDGYKSLEEGQKVEFEVVDGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTRI 66
>gi|257865258|ref|ZP_05644911.1| cold shock protein CspC [Enterococcus casseliflavus EC30]
gi|257871586|ref|ZP_05651239.1| cold shock protein CspC [Enterococcus casseliflavus EC10]
gi|257799192|gb|EEV28244.1| cold shock protein CspC [Enterococcus casseliflavus EC30]
gi|257805750|gb|EEV34572.1| cold shock protein CspC [Enterococcus casseliflavus EC10]
Length = 66
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N DKG+GFIT E G DVF H SA+ + G +L EGQ VT+D +
Sbjct: 1 MNKGTVKWFNADKGFGFITGEN----GQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--MQAVNI 63
>gi|119386361|ref|YP_917416.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119376956|gb|ABL71720.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 80
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H SA+ A + +L +GQ V+++ +
Sbjct: 13 MANGTVKWFNATKGFGFIAPAN---GGKDVFVHISALERANISHLADGQAVSFEI-ETGR 68
Query: 62 NGKYSAENLKL 72
+G+ SA +L L
Sbjct: 69 DGRQSARDLAL 79
>gi|316933345|ref|YP_004108327.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris DX-1]
gi|315601059|gb|ADU43594.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 69
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ V+++ +
Sbjct: 1 MTTGTVKWFNGQKGFGFIAPSD---GGNDVFVHISAVERAGLSGLAEGQQVSFEVKVDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKSSAENLAL 68
>gi|86358177|ref|YP_470069.1| cold shock protein [Rhizobium etli CFN 42]
gi|86282279|gb|ABC91342.1| cold shock protein [Rhizobium etli CFN 42]
Length = 70
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++K++N DKG+GFITP+G DVF+H SA+ ++G+ +L EGQ VT+D +
Sbjct: 1 MATKGTVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 58 MGKGPKAVNIS 68
>gi|304321935|ref|YP_003855578.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis
HTCC2503]
gi|303300837|gb|ADM10436.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis
HTCC2503]
Length = 69
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+ E G DVF+H SAV AGL L + Q V+Y+ VQ D
Sbjct: 1 MATGTVKWFNAEKGFGFIKPD---EGGQDVFVHISAVQEAGLKGLDDNQRVSYEMVQ-DR 56
Query: 62 NGKYSAENLKLVP 74
G+ SA LKL+
Sbjct: 57 RGRSSAGELKLMS 69
>gi|294636209|ref|ZP_06714624.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|291090490|gb|EFE23051.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
Length = 97
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP DVF+H SA+ S G L EGQ V + Q+
Sbjct: 32 KTGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQSDGFKTLAEGQQVEFSI-QDSPR 87
Query: 63 GKYSAENLKL 72
G +A+ + L
Sbjct: 88 GPAAADVVAL 97
>gi|319651118|ref|ZP_08005251.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
gi|317397172|gb|EFV77877.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI + G DVF+H SA+ + G L EGQ VT++ V+ +
Sbjct: 1 MNTGKVKWFNAEKGFGFIE----SSEGQDVFVHFSAIQTEGFKTLEEGQDVTFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|116252711|ref|YP_768549.1| cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841]
gi|190892268|ref|YP_001978810.1| cold shock protein [Rhizobium etli CIAT 652]
gi|209549797|ref|YP_002281714.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|218463687|ref|ZP_03503778.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5]
gi|218510076|ref|ZP_03507954.1| cold-shock DNA-binding domain protein [Rhizobium etli Brasil 5]
gi|218660216|ref|ZP_03516146.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
gi|218674774|ref|ZP_03524443.1| cold-shock DNA-binding domain protein [Rhizobium etli GR56]
gi|241205217|ref|YP_002976313.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115257359|emb|CAK08454.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
gi|190697547|gb|ACE91632.1| cold shock protein [Rhizobium etli CIAT 652]
gi|209535553|gb|ACI55488.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|240859107|gb|ACS56774.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|327192667|gb|EGE59605.1| cold shock protein CspA [Rhizobium etli CNPAF512]
Length = 70
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++K++N DKG+GFITP+G DVF+H SA+ ++G+ +L EGQ VT+D +
Sbjct: 1 MATKGTVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 58 MGKGPKAVNIS 68
>gi|255027485|ref|ZP_05299471.1| cold shock protein [Listeria monocytogenes FSL J2-003]
Length = 65
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI + G+D+F+H +A+ G +L EGQ VT++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIESD----GGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVEK 65
>gi|229141918|ref|ZP_04270444.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26]
gi|229199306|ref|ZP_04325973.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293]
gi|228584166|gb|EEK42317.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293]
gi|228641533|gb|EEK97838.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26]
Length = 65
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+
Sbjct: 2 QGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|227505644|ref|ZP_03935693.1| cold shock protein [Corynebacterium striatum ATCC 6940]
gi|227197797|gb|EEI77845.1| cold shock protein [Corynebacterium striatum ATCC 6940]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N +KGYGFI E D+F+H S + G L E Q V+++ +
Sbjct: 1 MAQGTVKFFNAEKGYGFIEMED---GSGDIFVHYSEIQGNGFRTLEENQKVSFEVAEGQK 57
Query: 62 NGKYSAENLKLV 73
A+N+ +
Sbjct: 58 G--LQAQNVTAL 67
>gi|205373573|ref|ZP_03226376.1| CspB [Bacillus coahuilensis m4-4]
Length = 65
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E DDVF+H SA+ G +L EGQ V+++ V+ +
Sbjct: 1 MLQGKVKWFNAEKGFGFIEVE----GQDDVFVHFSAIQGEGFKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|53720168|ref|YP_109154.1| cold shock-like protein [Burkholderia pseudomallei K96243]
gi|76811439|ref|YP_334418.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|83720914|ref|YP_442133.1| cold-shock domain-contain protein [Burkholderia thailandensis
E264]
gi|126441090|ref|YP_001059958.1| cold-shock domain-contain protein [Burkholderia pseudomallei 668]
gi|126452235|ref|YP_001067250.1| cold-shock domain-contain protein [Burkholderia pseudomallei
1106a]
gi|167581004|ref|ZP_02373878.1| cold-shock domain family protein [Burkholderia thailandensis
TXDOH]
gi|167619082|ref|ZP_02387713.1| cold-shock domain family protein [Burkholderia thailandensis Bt4]
gi|167720733|ref|ZP_02403969.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
gi|167739716|ref|ZP_02412490.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
gi|167816920|ref|ZP_02448600.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
gi|167825323|ref|ZP_02456794.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
gi|167846825|ref|ZP_02472333.1| cold-shock domain family protein [Burkholderia pseudomallei
B7210]
gi|167895416|ref|ZP_02482818.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
gi|167903800|ref|ZP_02491005.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
13177]
gi|167912067|ref|ZP_02499158.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
gi|167920041|ref|ZP_02507132.1| cold-shock domain family protein [Burkholderia pseudomallei
BCC215]
gi|217421179|ref|ZP_03452684.1| cold shock family protein [Burkholderia pseudomallei 576]
gi|226193900|ref|ZP_03789502.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
gi|226197837|ref|ZP_03793411.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
gi|237813374|ref|YP_002897825.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|242316730|ref|ZP_04815746.1| cold shock family protein [Burkholderia pseudomallei 1106b]
gi|254181035|ref|ZP_04887633.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|52210582|emb|CAH36565.1| cold shock-like protein [Burkholderia pseudomallei K96243]
gi|76580892|gb|ABA50367.1| cold shock transcription regulator protein [Burkholderia
pseudomallei 1710b]
gi|83654739|gb|ABC38802.1| cold-shock domain family protein-related protein [Burkholderia
thailandensis E264]
gi|126220583|gb|ABN84089.1| cold shock family protein [Burkholderia pseudomallei 668]
gi|126225877|gb|ABN89417.1| cold shock family protein [Burkholderia pseudomallei 1106a]
gi|184211574|gb|EDU08617.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
gi|217396591|gb|EEC36608.1| cold shock family protein [Burkholderia pseudomallei 576]
gi|225930025|gb|EEH26038.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
gi|225934205|gb|EEH30190.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
gi|237503488|gb|ACQ95806.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
MSHR346]
gi|242139969|gb|EES26371.1| cold shock family protein [Burkholderia pseudomallei 1106b]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMEGFKTLKENQRVSFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAL 67
>gi|146280285|ref|YP_001170441.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC
17025]
gi|145558526|gb|ABP73136.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC
17025]
Length = 68
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H +A+ AG+ L +GQ VTYD + D
Sbjct: 1 MANGTVKWFNATKGFGFIAPA---HGSKDVFVHVTALERAGIHQLNDGQAVTYDM-ETDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|330819166|ref|YP_004348028.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
BSR3]
gi|327371161|gb|AEA62516.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
BSR3]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ GDD+F H S V+ G L E Q V+++ +
Sbjct: 1 MDTGIVKWFNDSKGFGFITPDN---GGDDLFAHFSEVSGDGFKTLAENQKVSFETKRGPK 57
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 58 G--MQAANIKPL 67
>gi|302391175|ref|YP_003826995.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
gi|302203252|gb|ADL11930.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G++KW++ KGYGFI E G+DVF+H SA+ G L +GQ V ++ V+ D
Sbjct: 1 MILSGTVKWFDTKKGYGFIESE----EGEDVFVHYSAIDEDGFKTLEDGQEVEFEIVEGD 56
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 57 KG--PQAENVVKI 67
>gi|297538451|ref|YP_003674220.1| cold-shock DNA-binding domain-containing protein [Methylotenera
sp. 301]
gi|297257798|gb|ADI29643.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ GDD+F H SA+ +G +L E V++D
Sbjct: 1 MATGLVKWFNDSKGFGFITPD---AGGDDLFAHFSAIVDSGYKSLKENDRVSFDVTDGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|226312661|ref|YP_002772555.1| cold shock protein [Brevibacillus brevis NBRC 100599]
gi|226095609|dbj|BAH44051.1| cold shock protein [Brevibacillus brevis NBRC 100599]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ VQ +
Sbjct: 1 MQTNGTVKWFNAEKGFGFIQVE----GGDDVFVHFSAIQGDGFKTLDEGQKVQFNIVQGN 56
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 57 RG--PQAENVVKL 67
>gi|327440809|dbj|BAK17174.1| cold shock protein [Solibacillus silvestris StLB046]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF H SA+ G L EGQ V +
Sbjct: 1 MTQGTVKWFNSEKGFGFIEVE----GGSDVFAHFSAIQGDGFKTLEEGQKVEFSVEDGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNIVKL 66
>gi|254492515|ref|ZP_05105687.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
thiooxidans DMS010]
gi|224462407|gb|EEF78684.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
thiooxydans DMS010]
Length = 68
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H S + G L EGQ V + Q
Sbjct: 4 TTGTVKWFNEAKGFGFIEQE----SGPDVFAHFSQIKGDGFRTLNEGQRVEFTVTQGAKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENITAL 68
>gi|86358607|ref|YP_470499.1| cold shock protein [Rhizobium etli CFN 42]
gi|116253191|ref|YP_769029.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|190892746|ref|YP_001979288.1| cold shock protein [Rhizobium etli CIAT 652]
gi|209550323|ref|YP_002282240.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|218663420|ref|ZP_03519350.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
gi|241205705|ref|YP_002976801.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|86282709|gb|ABC91772.1| cold shock protein [Rhizobium etli CFN 42]
gi|115257839|emb|CAK08937.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|190698025|gb|ACE92110.1| cold shock protein [Rhizobium etli CIAT 652]
gi|209536079|gb|ACI56014.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|240859595|gb|ACS57262.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|327188379|gb|EGE55596.1| cold shock protein [Rhizobium etli CNPAF512]
Length = 71
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI P+ G D+F+H SAV ++GL LTE Q V++D +
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---RGGADIFVHISAVQASGLAGLTENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKL 72
A NL++
Sbjct: 58 RGKGPKAVNLQI 69
>gi|94968921|ref|YP_590969.1| cold-shock DNA-binding protein family protein [Candidatus
Koribacter versatilis Ellin345]
gi|94550971|gb|ABF40895.1| cold-shock DNA-binding protein family [Candidatus Koribacter
versatilis Ellin345]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI+ ++G+DVF+H +A+ + G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFISR----QNGEDVFVHHTAIQAQGFRSLQEGQAVQFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ AEN++ +
Sbjct: 57 G--WQAENVQAL 66
>gi|331017260|gb|EGH97316.1| cold shock domain family protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 77
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q
Sbjct: 3 MLNGKVKWFNNAKGYGFILEDGKP--DEDLFAHYSAIQMDGYKTLKAGQPVRFEIIQGPK 60
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 61 G--LHAVNIQ 68
>gi|326692849|ref|ZP_08229854.1| cold shock protein [Leuconostoc argentinum KCTC 3773]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E GDDVF H SA+ S G L EGQ VT+D D
Sbjct: 1 METGTVKWFNGDKGFGFITREN----GDDVFAHFSAIQSDGFKTLDEGQSVTFDVESGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANI 63
>gi|260597049|ref|YP_003209620.1| cold shock protein CspE [Cronobacter turicensis z3032]
gi|260216226|emb|CBA29122.1| Cold shock-like protein cspE [Cronobacter turicensis z3032]
Length = 97
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 33 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 88
Query: 64 KYSAENL 70
SA N+
Sbjct: 89 -PSAANV 94
>gi|322417715|ref|YP_004196938.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320124102|gb|ADW11662.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF+H SA+ S G +L EG VT+D Q
Sbjct: 1 MAKGVVKWFNDSKGFGFIEQEN----GEDVFVHFSAIQSDGFKSLAEGDSVTFDVQQGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|188586202|ref|YP_001917747.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350889|gb|ACB85159.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KGYGFI E DVF+H SA+ G +L +GQ V ++ V+ D
Sbjct: 1 MTTGTVKWFDSKKGYGFIERESGEG---DVFVHFSAINEEGFKSLEDGQEVEFEVVEADR 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PQAANVNKL 67
>gi|119944855|ref|YP_942535.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119863459|gb|ABM02936.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFITPE E G+D+F+H S + + G L EGQ V Y+ +
Sbjct: 1 MSIGTVKWFNADKGFGFITPE---EGGNDLFVHHSQIKTGGYATLNEGQKVEYEVGEGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PCANNVVPL 67
>gi|107027431|ref|YP_624942.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|105896805|gb|ABF79969.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
AU 1054]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYETKNGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQASNI 64
>gi|260425753|ref|ZP_05779733.1| conserved domain protein [Citreicella sp. SE45]
gi|260423693|gb|EEX16943.1| conserved domain protein [Citreicella sp. SE45]
Length = 68
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SA+ AGL L + Q VTYD ++
Sbjct: 1 MANGTVKWFNSTKGFGFIEPEN---GGRDVFVHISAIERAGLTGLADAQKVTYDV-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAINLAL 67
>gi|323483687|ref|ZP_08089070.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14163]
gi|323692654|ref|ZP_08106885.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323403023|gb|EGA95338.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14163]
gi|323503291|gb|EGB19122.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+D+F+H S +A G L +GQ V+++ +
Sbjct: 1 MNKGTVKWFNSQKGYGFISDE----QGNDIFVHFSGLAMDGYKTLEDGQSVSFEVTEGAR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--LQAVNVTV 65
>gi|303239877|ref|ZP_07326400.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
CD2]
gi|302592587|gb|EFL62312.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
CD2]
Length = 65
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V +D +
Sbjct: 3 GKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSQGYKSLDEGQRVEFDLEKGQRG-- 56
Query: 65 YSAENLKL 72
A N++L
Sbjct: 57 LQATNVRL 64
>gi|227515455|ref|ZP_03945504.1| CspA family cold shock transcriptional regulator [Lactobacillus
fermentum ATCC 14931]
gi|227086169|gb|EEI21481.1| CspA family cold shock transcriptional regulator [Lactobacillus
fermentum ATCC 14931]
gi|299783543|gb|ADJ41541.1| CspA family cold shock transcriptional regulator [Lactobacillus
fermentum CECT 5716]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G+IKW+N +KGYGFI+ E GDDVF+H SA+ G L EGQ VT+D D
Sbjct: 1 MEQGTIKWFNDEKGYGFISREA----GDDVFVHFSAIQGDGFKTLEEGQSVTFDVENGDR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--LQAANVSK 65
>gi|154248732|ref|YP_001409557.1| cold-shock DNA-binding domain-containing protein
[Fervidobacterium nodosum Rt17-B1]
gi|154152668|gb|ABS59900.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
nodosum Rt17-B1]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT E G+D+F+H SA+ + G L EG V ++
Sbjct: 2 KGTVKWFDAKKGYGFITKED----GEDIFVHYSAIQAEGYKTLKEGDKVEFEVQNGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+K++
Sbjct: 57 -PQAANVKVIK 66
>gi|311029540|ref|ZP_07707630.1| cold shock protein [Bacillus sp. m3-13]
Length = 65
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+
Sbjct: 1 MLQGKVKWFNAEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQEVSFEIVEGAR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|218512700|ref|ZP_03509540.1| cold-shock DNA-binding domain protein [Rhizobium etli 8C-3]
Length = 92
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI P+ G D+F+H SAV ++GL LTE Q V++D +
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---RGGADIFVHISAVQASGLAGLTENQNVSFDTEPDR 57
Query: 61 ANGKYSAENLKLVPK 75
A L++ +
Sbjct: 58 RGKGPQAVILQIAAE 72
>gi|187925052|ref|YP_001896694.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
gi|187716246|gb|ACD17470.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
PsJN]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + + G +L E Q V++D
Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRAEGFKSLKENQRVSFDVKAGPK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 GK--QAANIHPL 67
>gi|296166503|ref|ZP_06848934.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898115|gb|EFG77690.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+G DVF+H S + G +L E Q V ++ Q
Sbjct: 1 MTQGTVKWFNSEKGFGFIAPDG---GAADVFVHYSEIQGNGYRSLEENQRVEFNVEQGAK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQAVGVTAV 67
>gi|86140176|ref|ZP_01058738.1| cold shock family protein [Roseobacter sp. MED193]
gi|85823113|gb|EAQ43326.1| cold shock family protein [Roseobacter sp. MED193]
Length = 68
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D +
Sbjct: 1 MASGTVKWFNSTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL+L
Sbjct: 57 DGRESAVNLEL 67
>gi|292487806|ref|YP_003530681.1| cold shock-like protein CspD [Erwinia amylovora CFBP1430]
gi|292899035|ref|YP_003538404.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|291198883|emb|CBJ45993.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|291553228|emb|CBA20273.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora CFBP1430]
gi|312171924|emb|CBX80181.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora ATCC
BAA-2158]
Length = 75
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q
Sbjct: 1 MMTGTVKWFNNAKGFGFICPAG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|237809065|ref|YP_002893505.1| cold-shock DNA-binding domain-containing protein [Tolumonas
auensis DSM 9187]
gi|237501326|gb|ACQ93919.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
9187]
Length = 72
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ E GDD+F H S + G L GQ V ++
Sbjct: 1 MATGTVKWFNNAKGFGFICPD---EGGDDIFAHYSTIDMNGYKTLKAGQPVEFEVQAGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|297201136|ref|ZP_06918533.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|197713662|gb|EDY57696.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|104781331|ref|YP_607829.1| cold-shock protein CspD [Pseudomonas entomophila L48]
gi|95110318|emb|CAK15025.1| cold-shock protein CspD [Pseudomonas entomophila L48]
Length = 87
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG +D+F H SA+ G L GQ VT++ +Q
Sbjct: 1 MASGKVKWFNNAKGYGFINEEG---KDEDLFAHYSAIQMDGYKTLKAGQAVTFELLQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--HAVNIQ 65
>gi|108803141|ref|YP_643078.1| cold-shock DNA-binding protein family protein [Rubrobacter
xylanophilus DSM 9941]
gi|108764384|gb|ABG03266.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
DSM 9941]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ +KGYGFI+P+ +D+F+H + +A G L EG V+Y+ +
Sbjct: 1 MAQGTVKWFSDEKGYGFISPDD---GSEDLFVHYTGIAGEGFKTLEEGARVSYEATRGRK 57
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 58 G--MQAENVSPL 67
>gi|229032808|ref|ZP_04188764.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271]
gi|228728481|gb|EEL79501.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271]
Length = 67
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V +
Sbjct: 1 MNMQGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55
Query: 61 ANGKYSAENLKL 72
A G +A +KL
Sbjct: 56 ARGPQAANVIKL 67
>gi|224369441|ref|YP_002603605.1| CspB1 [Desulfobacterium autotrophicum HRM2]
gi|223692158|gb|ACN15441.1| CspB1 [Desulfobacterium autotrophicum HRM2]
Length = 66
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E G DVF+H S + + G +L EG V++D +
Sbjct: 1 MANGIVKWFNDSKGFGFIEQEN----GKDVFVHHSGINATGFKSLNEGDRVSFDIEEGPK 56
Query: 62 NGKYSAENLKLV 73
SA N+ ++
Sbjct: 57 G--PSATNVTVI 66
>gi|149374445|ref|ZP_01892219.1| Cold shock protein [Marinobacter algicola DG893]
gi|149361148|gb|EDM49598.1| Cold shock protein [Marinobacter algicola DG893]
Length = 193
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + SGD+VF+H A+ G L +GQLV + V+ D
Sbjct: 127 EEGTVKWFNVKKGFGFIVRD----SGDEVFVHFRAIRGRGRRVLRQGQLVRFSVVEADKG 182
Query: 63 GKYSAENLKLVPK 75
A+N+ ++
Sbjct: 183 --LQADNVSILSD 193
>gi|311280210|ref|YP_003942441.1| cold-shock DNA-binding domain-containing protein [Enterobacter
cloacae SCF1]
gi|308749405|gb|ADO49157.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
Length = 73
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 58 GN--HASVIIPVEAET 71
>gi|302800247|ref|XP_002981881.1| hypothetical protein SELMODRAFT_154869 [Selaginella
moellendorffii]
gi|300150323|gb|EFJ16974.1| hypothetical protein SELMODRAFT_154869 [Selaginella
moellendorffii]
Length = 182
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITP+ +++F+H+SA+ + G +L EG++V + Q + +
Sbjct: 10 TGKVKWFNVTKGFGFITPDD---GSEELFVHQSAIFAEGFRSLREGEIVEFSVEQGE-DQ 65
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 66 RMRAADVT 73
>gi|146338511|ref|YP_001203559.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
gi|146191317|emb|CAL75322.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P G D+F+H SAV AGL L EGQ + Y+ + N
Sbjct: 1 MAKGTVKWFNPTKGYGFIQPA---AGGKDIFVHISAVQKAGLATLNEGQTIEYEEIAN-- 55
Query: 62 NGKYSAENLKL 72
G+ SAENLK+
Sbjct: 56 RGRSSAENLKV 66
>gi|37725749|gb|AAO32343.1| cold shock protein 3 [Streptomyces sp. AA8321]
Length = 65
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI + G DVF H S + ++G +L E Q V ++ Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDT---GGPDVFAHYSNIRASGFRSLEEAQRVEFNVTQGQK 57
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 58 G--PQAENVS 65
>gi|15616172|ref|NP_244477.1| cold-shock protein [Bacillus halodurans C-125]
gi|10176234|dbj|BAB07329.1| cold-shock protein [Bacillus halodurans C-125]
Length = 65
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V +D V+
Sbjct: 2 QGKVKWFNAEKGFGFIERED----GDDVFVHFSAINTDGFKTLDEGQSVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVTKL 65
>gi|16974809|pdb|1I5F|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
gi|16974810|pdb|1I5F|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQEGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|134293708|ref|YP_001117444.1| cold-shock DNA-binding protein family protein [Burkholderia
vietnamiensis G4]
gi|134136865|gb|ABO57979.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
G4]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+Y+ +
Sbjct: 1 MDTGTVKWFNETKGFGFISPDN---GGDDLFAHFSEIRGTGFKTLAEGQKVSYEVKRGPK 57
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 58 G--LQASSITP 66
>gi|312796301|ref|YP_004029223.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312168076|emb|CBW75079.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 72
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ G+D+F H S V G L E Q V+Y +
Sbjct: 6 MDTGIVKWFNDSKGFGFITPD---AGGEDLFAHFSEVTGEGFKTLVENQRVSYQVKRGPK 62
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 63 G--LQAANIKPL 72
>gi|253990328|ref|YP_003041684.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781778|emb|CAQ84941.1| cold shock-like protein cspd (csp-d) [Photorhabdus asymbiotica]
Length = 73
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+D+F H S + G L GQ V + Q
Sbjct: 1 METGTVKWFNNAKGFGFICPAS---GGEDIFAHYSTIQMDGYRTLKAGQKVHFSVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|349561|gb|AAB66357.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 70
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENLK 71
+A N+
Sbjct: 62 -PAAANVT 68
>gi|115526308|ref|YP_783219.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisA53]
gi|115520255|gb|ABJ08239.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KGYGFI P G DVF+H SAV+ AGL L EGQ + ++ V N
Sbjct: 1 MASGTVKWFNPTKGYGFIQPSN---GGKDVFVHISAVSRAGLSTLNEGQSLEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
G+ SAENL++
Sbjct: 56 RGRTSAENLRV 66
>gi|15641155|ref|NP_230787.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587431|ref|ZP_01677200.1| cold shock-like protein CspD [Vibrio cholerae 2740-80]
gi|121726283|ref|ZP_01679573.1| cold shock-like protein CspD [Vibrio cholerae V52]
gi|147674134|ref|YP_001216662.1| cold shock-like protein CspD [Vibrio cholerae O395]
gi|153214227|ref|ZP_01949262.1| cold shock-like protein CspD [Vibrio cholerae 1587]
gi|153802582|ref|ZP_01957168.1| cold shock-like protein CspD [Vibrio cholerae MZO-3]
gi|153816958|ref|ZP_01969625.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457]
gi|153822008|ref|ZP_01974675.1| cold shock-like protein CspD [Vibrio cholerae B33]
gi|153826040|ref|ZP_01978707.1| cold shock-like protein CspD [Vibrio cholerae MZO-2]
gi|153828664|ref|ZP_01981331.1| cold shock-like protein CspD [Vibrio cholerae 623-39]
gi|227081315|ref|YP_002809866.1| cold shock-like protein CspD [Vibrio cholerae M66-2]
gi|254291567|ref|ZP_04962357.1| cold shock-like protein CspD [Vibrio cholerae AM-19226]
gi|254848270|ref|ZP_05237620.1| cold shock-like protein CspD [Vibrio cholerae MO10]
gi|297578744|ref|ZP_06940672.1| predicted protein [Vibrio cholerae RC385]
gi|298498753|ref|ZP_07008560.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK
757]
gi|20138015|sp|Q9KSW4|CSPD_VIBCH RecName: Full=Cold shock-like protein CspD
gi|9655615|gb|AAF94301.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548351|gb|EAX58415.1| cold shock-like protein CspD [Vibrio cholerae 2740-80]
gi|121631229|gb|EAX63602.1| cold shock-like protein CspD [Vibrio cholerae V52]
gi|124115476|gb|EAY34296.1| cold shock-like protein CspD [Vibrio cholerae 1587]
gi|124121896|gb|EAY40639.1| cold shock-like protein CspD [Vibrio cholerae MZO-3]
gi|126512545|gb|EAZ75139.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457]
gi|126520473|gb|EAZ77696.1| cold shock-like protein CspD [Vibrio cholerae B33]
gi|146316017|gb|ABQ20556.1| cold shock-like protein CspD [Vibrio cholerae O395]
gi|148875817|gb|EDL73952.1| cold shock-like protein CspD [Vibrio cholerae 623-39]
gi|149740260|gb|EDM54407.1| cold shock-like protein CspD [Vibrio cholerae MZO-2]
gi|150422519|gb|EDN14476.1| cold shock-like protein CspD [Vibrio cholerae AM-19226]
gi|227009203|gb|ACP05415.1| cold shock-like protein CspD [Vibrio cholerae M66-2]
gi|227013009|gb|ACP09219.1| cold shock-like protein CspD [Vibrio cholerae O395]
gi|254843975|gb|EET22389.1| cold shock-like protein CspD [Vibrio cholerae MO10]
gi|297536338|gb|EFH75171.1| predicted protein [Vibrio cholerae RC385]
gi|297543086|gb|EFH79136.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK
757]
Length = 76
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q
Sbjct: 4 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPK 60
Query: 62 N 62
Sbjct: 61 G 61
>gi|326693593|ref|ZP_08230598.1| cold shock protein [Leuconostoc argentinum KCTC 3773]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGF+T E G+DVF H SA+ G L EGQ V ++ +D
Sbjct: 1 MEKGTVKWFNGEKGYGFVTREN----GEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANIVKL 66
>gi|258621691|ref|ZP_05716722.1| cold shock-like protein CspD [Vibrio mimicus VM573]
gi|258626362|ref|ZP_05721209.1| cold shock-like protein CspD [Vibrio mimicus VM603]
gi|262171824|ref|ZP_06039502.1| cold shock protein CspD [Vibrio mimicus MB-451]
gi|262402499|ref|ZP_06079060.1| cold shock protein CspD [Vibrio sp. RC586]
gi|258581414|gb|EEW06316.1| cold shock-like protein CspD [Vibrio mimicus VM603]
gi|258585922|gb|EEW10640.1| cold shock-like protein CspD [Vibrio mimicus VM573]
gi|261892900|gb|EEY38886.1| cold shock protein CspD [Vibrio mimicus MB-451]
gi|262351281|gb|EEZ00414.1| cold shock protein CspD [Vibrio sp. RC586]
Length = 73
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|167563689|ref|ZP_02356605.1| cold-shock domain family protein [Burkholderia oklahomensis
EO147]
gi|167570839|ref|ZP_02363713.1| cold-shock domain family protein [Burkholderia oklahomensis
C6786]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIKMDGFKTLKENQRVSFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAL 67
>gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
gi|62389205|ref|YP_224607.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
gi|21323072|dbj|BAB97701.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
gi|41324538|emb|CAF18878.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP+KG+GFI P DVF+H S + G L E QLV ++ +
Sbjct: 1 MAQGTVKWFNPEKGFGFIAPSD---GSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAK 57
Query: 62 NGKYSAE 68
+ A
Sbjct: 58 GLQAQAV 64
>gi|323467067|gb|ADX70754.1| cold shock-like protein, CspA family [Lactobacillus helveticus
H10]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT G DVF+H S++ + G +L EGQ V+YD Q
Sbjct: 1 MQNGTVKWFNADKGFGFIT----GSDGTDVFVHFSSIKTDGFKSLEEGQKVSYDVEQGRR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|281500776|pdb|3I2Z|B Chain B, Structure Of Cold Shock Protein E From Salmonella
Typhimurium
gi|281500777|pdb|3I2Z|A Chain A, Structure Of Cold Shock Protein E From Salmonella
Typhimurium
Length = 71
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 7 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 62
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 63 -PSAANVTAL 71
>gi|332971719|gb|EGK10667.1| cold shock protein CspA [Desmospora sp. 8437]
Length = 65
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 2 QGKVKWFNAEKGYGFIERE----GGDDVFVHYSAIQEEGFKTLDEGQTVEFEIVEGPRG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -PQAANV 62
>gi|330720265|gb|EGG98627.1| Cold shock protein [gamma proteobacterium IMCC2047]
Length = 145
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N KG+GFIT + SG+DVF+H +V G L EGQ V + V+ +
Sbjct: 79 REQGTVKWFNVTKGFGFITRD----SGEDVFVHYRSVRGNGRRTLREGQRVLFKVVEGEK 134
Query: 62 NGKYSAENLKLVP 74
AE++ +
Sbjct: 135 G--LQAEDVSVAE 145
>gi|296135805|ref|YP_003643047.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
gi|294339970|emb|CAZ88333.1| Cold shock protein [Thiomonas sp. 3As]
gi|295795927|gb|ADG30717.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ E G+D+F H S + + G L E Q V +
Sbjct: 1 MATGTVKWFNESKGFGFIKPD---EGGEDLFAHFSEIQAKGFRTLQENQRVEFTVKAGPK 57
Query: 62 NGKYSAE 68
+ SA
Sbjct: 58 GPQASAI 64
>gi|268590196|ref|ZP_06124417.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131]
gi|291314477|gb|EFE54930.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131]
Length = 81
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P G+D+F H S + G L GQ V +
Sbjct: 1 METGIVKWFNNAKGFGFICPAD---GGEDIFAHYSCIQMDGYRTLKAGQKVQFSVTIGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|225571084|ref|ZP_03780101.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM
15053]
gi|225160165|gb|EEG72784.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM
15053]
Length = 103
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFIT + G DVF+H SA+ S G L EGQ VT+D +
Sbjct: 35 MNSGTVKWFNSQKGFGFITDD----QGGDVFVHFSAIVSNGFKTLEEGQKVTFDTETDPK 90
Query: 62 N-GKYSAENL 70
+ K A N+
Sbjct: 91 DSSKLKAVNV 100
>gi|328957165|ref|YP_004374551.1| putative cold shock protein, CspA family [Carnobacterium sp.
17-4]
gi|328673489|gb|AEB29535.1| putative cold shock protein, CspA family [Carnobacterium sp.
17-4]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DDVF+H SA+ G +L EGQ VT+D + +
Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----GADDVFVHFSAIQGEGFKSLEEGQAVTFDVEEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVNK 65
>gi|290958776|ref|YP_003489958.1| cold shock protein [Streptomyces scabiei 87.22]
gi|260648302|emb|CBG71413.1| cold shock protein [Streptomyces scabiei 87.22]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|255264493|ref|ZP_05343835.1| conserved domain protein [Thalassiobium sp. R2A62]
gi|255106828|gb|EET49502.1| conserved domain protein [Thalassiobium sp. R2A62]
Length = 69
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G DVF+H SAV +GL L + Q V +D +
Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVNFDI-EAGR 56
Query: 62 NGKYSAENLK 71
+G+ SA N+
Sbjct: 57 DGRESAINIT 66
>gi|217076694|ref|YP_002334410.1| hypothetical protein THA_582 [Thermosipho africanus TCF52B]
gi|217036547|gb|ACJ75069.1| conserved domain protein [Thermosipho africanus TCF52B]
Length = 65
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT E G+D+F+H SA+ + G L EGQ V +D
Sbjct: 2 KGTVKWFDAKKGYGFITKED----GEDIFVHWSAIQTDGFKTLKEGQEVEFDVQDGQKG- 56
Query: 64 KYSAENLKLV 73
A N+K +
Sbjct: 57 -PQAANVKPL 65
>gi|313671996|ref|YP_004050107.1| cold-shock DNA-binding domain protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938752|gb|ADR17944.1| cold-shock DNA-binding domain protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G++KW+N KGYGFIT + +G+DVF+H SA+ G +L EG V +D V+
Sbjct: 1 MSNTGTVKWFNDTKGYGFIT----STTGEDVFVHYSAITMGGFKSLKEGDRVKFDIVKGP 56
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 57 KG--PQAANV 64
>gi|290476206|ref|YP_003469106.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Xenorhabdus bovienii SS-2004]
gi|289175539|emb|CBJ82342.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Xenorhabdus bovienii SS-2004]
Length = 69
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++ +
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITEGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVVPI 69
>gi|158523075|ref|YP_001530945.1| cold-shock DNA-binding domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158511901|gb|ABW68868.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans
Hxd3]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + G DVF+H SA+ ++G L EG VT+D V
Sbjct: 1 MADGIVKWFNDSKGFGFIEQDN----GPDVFVHHSAINASGFKTLNEGDRVTFDIVDGKK 56
Query: 62 NGKYSAENLKLV 73
+A N+ +V
Sbjct: 57 G--PAAANVTVV 66
>gi|118445055|ref|YP_879083.1| cold shock protein cspB [Clostridium novyi NT]
gi|118135511|gb|ABK62555.1| cold shock protein cspB [Clostridium novyi NT]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ E DDVF+H SA+ G L EGQ V ++ +
Sbjct: 1 MKTGIVKWFNAEKGFGFISVE----GEDDVFVHFSAIQGEGFKTLEEGQKVEFEVTEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|20135600|gb|AAM09094.1| cold-shock protein CspD [Burkholderia multivorans]
Length = 68
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIQ 65
>gi|307824911|ref|ZP_07655133.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307733958|gb|EFO04813.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+DVF+H S + G LTEG VT+D
Sbjct: 1 MATGTVKWFNNTKGFGFIAPAD---GGEDVFVHHSVIQGEGFKTLTEGDTVTFDIESGPK 57
Query: 62 NGKYSAENL 70
+A N+
Sbjct: 58 G--LTAANV 64
>gi|212633937|ref|YP_002310462.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
gi|212555421|gb|ACJ27875.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
Length = 70
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V++D Q
Sbjct: 5 TTGIVKWFNEDKGFGFITQDN---GGADVFVHFRAIASDGFKTLAEGQKVSFDLEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --PQAANVVAI 70
>gi|254254112|ref|ZP_04947429.1| Cold shock protein [Burkholderia dolosa AUO158]
gi|124898757|gb|EAY70600.1| Cold shock protein [Burkholderia dolosa AUO158]
Length = 83
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+P+ GDD+F H S + G L E Q V+Y+ +
Sbjct: 19 TGTVKWFNETKGFGFISPDN---GGDDLFAHFSEIRGTGFKTLAENQKVSYEVKRGPKG- 74
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 75 -LQASNITPL 83
>gi|83950568|ref|ZP_00959301.1| cold shock family protein [Roseovarius nubinhibens ISM]
gi|83838467|gb|EAP77763.1| cold shock family protein [Roseovarius nubinhibens ISM]
Length = 68
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AGL L + Q VTYD +
Sbjct: 1 MANGTVKWFNTTKGYGFIAPDD---GGKDVFVHISAVERAGLTGLADNQKVTYDL-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESAGNIVL 67
>gi|226943301|ref|YP_002798374.1| Cold shock domain family protein [Azotobacter vinelandii DJ]
gi|226718228|gb|ACO77399.1| Cold shock domain family protein [Azotobacter vinelandii DJ]
Length = 70
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ V+++ VQ
Sbjct: 4 RQTGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGTGFKSLKEGQKVSFEAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 60 G--MQADKVQIL 69
>gi|294499936|ref|YP_003563636.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295705319|ref|YP_003598394.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294349873|gb|ADE70202.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294802978|gb|ADF40044.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 65
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ VT++ V+ +
Sbjct: 1 MLQGKVKWFNAEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQEVTFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|156933606|ref|YP_001437522.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
BAA-894]
gi|156531860|gb|ABU76686.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
BAA-894]
Length = 90
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 26 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 81
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 82 -PAAVNVVAI 90
>gi|163851320|ref|YP_001639363.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|163662925|gb|ABY30292.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
Length = 69
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVF+H SAV AG+ NL EGQ V+Y+ +
Sbjct: 1 MSIGTVKWFNDTKGFGFIQPED---GSKDVFVHISAVERAGMRNLIEGQKVSYEMETDRR 57
Query: 62 NGKYSAENLK 71
+GK SA +L+
Sbjct: 58 SGKQSAGSLQ 67
>gi|77465631|ref|YP_355134.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
gi|77390049|gb|ABA81233.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
Length = 77
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D
Sbjct: 10 MANGTVKWFNATKGFGFIAPTG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 66 NGRESATNLVL 76
>gi|83944783|ref|ZP_00957149.1| putative cold shock-like transcription regulator protein
[Oceanicaulis alexandrii HTCC2633]
gi|83851565|gb|EAP89420.1| putative cold shock-like transcription regulator protein
[Oceanicaulis alexandrii HTCC2633]
Length = 70
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N +KG+GFITP+ E DVF+H +AV AGL +L +GQ + ++ +
Sbjct: 1 MTTGTVKFFNTEKGFGFITPD---EGDKDVFVHITAVKDAGLNDLRDGQRIEFETEPDRR 57
Query: 62 NGKYSAENLK 71
A NLK
Sbjct: 58 GKGPKAVNLK 67
>gi|94311826|ref|YP_585036.1| cold-shock DNA-binding protein family protein [Cupriavidus
metallidurans CH34]
gi|93355678|gb|ABF09767.1| DNA-binding transcriptional repressor [Cupriavidus metallidurans
CH34]
Length = 69
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ +++F H SA+ +G L EGQ V ++ VQ
Sbjct: 1 MASGIVKWFNDAKGFGFIKPDDGE---EELFAHFSAIQMSGFKTLKEGQRVVFEIVQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|325571663|ref|ZP_08147113.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC
12755]
gi|325155708|gb|EGC67905.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC
12755]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N DKG+GFIT E G DVF H SA+ + G +L EGQ VT+D +
Sbjct: 1 MNKGTVKWFNSDKGFGFITGED----GQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANI 63
>gi|229542762|ref|ZP_04431822.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
gi|229327182|gb|EEN92857.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI GDDVF+H SA+ G L EGQ VT+D Q
Sbjct: 1 MEQGTVKWFNGEKGFGFIER----NGGDDVFVHFSAIQGEGFKTLDEGQKVTFDVEQGSR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVEK 65
>gi|23098034|ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HTE831]
gi|22776259|dbj|BAC12535.1| cold shock protein [Oceanobacillus iheyensis HTE831]
Length = 65
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ V+ + G
Sbjct: 2 TGKVKWFNAEKGFGFIERED----GDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGNR-G 56
Query: 64 KYSAENLKL 72
+A ++L
Sbjct: 57 PQAANVVRL 65
>gi|295114004|emb|CBL32641.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+D+F H SA+ S G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDIFAHFSAIQSDGFKTLDEGQAVTFDTEEGPR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|319651256|ref|ZP_08005386.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2]
gi|317397036|gb|EFV77744.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIQGEGFKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|257078464|ref|ZP_05572825.1| cold-shock protein [Enterococcus faecalis JH1]
gi|257091195|ref|ZP_05585556.1| cold-shock protein [Enterococcus faecalis CH188]
gi|294779596|ref|ZP_06744987.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
gi|307269865|ref|ZP_07551192.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|312902662|ref|ZP_07761867.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|256986494|gb|EEU73796.1| cold-shock protein [Enterococcus faecalis JH1]
gi|257000007|gb|EEU86527.1| cold-shock protein [Enterococcus faecalis CH188]
gi|294453253|gb|EFG21664.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
gi|306513772|gb|EFM82377.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|310634000|gb|EFQ17283.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|315162264|gb|EFU06281.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
gi|315579305|gb|EFU91496.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ + G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQTDGFKTLDEGQTVTFDTEEGPR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNI 63
>gi|224475930|ref|YP_002633536.1| putative cold-shock protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420537|emb|CAL27351.1| putative cold-shock protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V +D V+ D
Sbjct: 1 MNNGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIQGDGYKTLEEGQSVDFDIVEGDR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--EQAANVVKMS 67
>gi|229917667|ref|YP_002886313.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
gi|229469096|gb|ACQ70868.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KGYGFI E GDDVF+H SA+ G L EGQ VT++
Sbjct: 1 MNTGKVKWFNSEKGYGFIEME----GGDDVFVHFSAIQGDGFKTLEEGQEVTFEITDGAR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--PQASNVEKI 66
>gi|149202227|ref|ZP_01879200.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
gi|149144325|gb|EDM32356.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
Length = 68
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+G G DVF+H SAV AGL L + Q V +D +
Sbjct: 1 MATGTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADNQKVKFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESASNIVL 67
>gi|91792287|ref|YP_561938.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
gi|91714289|gb|ABE54215.1| cold-shock DNA-binding protein family [Shewanella denitrificans
OS217]
Length = 70
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFITP+ G DVF+H ++ S G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEDKGFGFITPDN---GGADVFVHFRSITSEGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --PQAANVSAI 70
>gi|239978906|ref|ZP_04701430.1| cold shock protein [Streptomyces albus J1074]
gi|291450789|ref|ZP_06590179.1| cold shock protein [Streptomyces albus J1074]
gi|291353738|gb|EFE80640.1| cold shock protein [Streptomyces albus J1074]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAGRGFRELLEGQKVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--LQAENI 64
>gi|197119112|ref|YP_002139539.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|197088472|gb|ACH39743.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
Length = 68
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI + G+DVF+H SA+ G +L EG+ V++D
Sbjct: 1 MAQGKVKWFNDAKGFGFIEQDN----GEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--LQAANVKKL 66
>gi|330446013|ref|ZP_08309665.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490204|dbj|GAA04162.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 69
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+++ Q
Sbjct: 4 ATGTVKWFNEEKGFGFITQDN---GGADVFVHFRAITGDGFKTLAEGQKVSFETEQGPKG 60
Query: 63 GKYSAENLKLV 73
A N++ V
Sbjct: 61 --LQAANVEKV 69
>gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacterium efficiens YS-314]
gi|259166686|gb|EEW51240.1| cold shock protein [Corynebacterium efficiens YS-314]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P DVF+H S + G NL E Q V ++ +
Sbjct: 1 MAQGTVKWFNAEKGFGFIAPSD---GSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQQVRAL 67
>gi|149915750|ref|ZP_01904275.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b]
gi|149810332|gb|EDM70177.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b]
Length = 68
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VTYD +
Sbjct: 1 MANGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTYDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL+L
Sbjct: 57 DGRESATNLQL 67
>gi|149195695|ref|ZP_01872752.1| putative cold-shock DNA-binding domain protein [Lentisphaera
araneosa HTCC2155]
gi|149141157|gb|EDM29553.1| putative cold-shock DNA-binding domain protein [Lentisphaera
araneosa HTCC2155]
Length = 67
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+ DKG+GFITP D+F+H + + + G +L EGQ V Y+ Q
Sbjct: 1 METGTVKWFADDKGFGFITP---NSGDKDLFVHHTEIQTGGFKSLAEGQKVEYEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--PCATNVTPL 67
>gi|163942598|ref|YP_001647482.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|229014070|ref|ZP_04171193.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
gi|229062554|ref|ZP_04199865.1| Cold shock protein cspB [Bacillus cereus AH603]
gi|229135709|ref|ZP_04264485.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
gi|229169605|ref|ZP_04297308.1| Cold shock protein cspB [Bacillus cereus AH621]
gi|2493764|sp|Q45099|CSPD_BACCE RecName: Full=Cold shock-like protein CspD
gi|1405476|emb|CAA63610.1| CspD protein [Bacillus cereus]
gi|163864795|gb|ABY45854.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
gi|228613880|gb|EEK71002.1| Cold shock protein cspB [Bacillus cereus AH621]
gi|228647746|gb|EEL03805.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
gi|228716728|gb|EEL68422.1| Cold shock protein cspB [Bacillus cereus AH603]
gi|228747216|gb|EEL97096.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
Length = 66
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V+++ V +
Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVDGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|295092996|emb|CBK82087.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI E G DVF+H SA+ G L EG V Y+ V +
Sbjct: 1 MKTGKVKWFNAKKGYGFICDED----GADVFVHFSALNMEGFKVLEEGDTVEYEVVDGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|205374414|ref|ZP_03227211.1| cold shock protein [Bacillus coahuilensis m4-4]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D + +
Sbjct: 1 MNTGKVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLEEGQSVTFDIEEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|205373098|ref|ZP_03225902.1| CspD [Bacillus coahuilensis m4-4]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E +DVF+H SA+ G +L EGQ V+++ V+
Sbjct: 1 MQNGKVKWFNNEKGFGFIEIE----GAEDVFVHFSAIEGEGYKSLEEGQEVSFEIVEGSR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVVKL 66
>gi|187250904|ref|YP_001875386.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium
minutum Pei191]
gi|186971064|gb|ACC98049.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum
Pei191]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KGYGF+TPE D+F+H + G L+EGQ V +D V++D
Sbjct: 1 MAKGKVKWFNDQKGYGFVTPED---GSKDLFVHYQEIKGEGFKTLSEGQEVEFDIVESDK 57
Query: 62 NGKYSAENLKL 72
K A N++
Sbjct: 58 GPK--AVNVRK 66
>gi|187477994|ref|YP_786018.1| cold shock-like protein [Bordetella avium 197N]
gi|115422580|emb|CAJ49105.1| cold shock-like protein [Bordetella avium 197N]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITPE G D+F H S + S G L E Q V+Y
Sbjct: 1 METGVVKWFNAEKGYGFITPES---GGKDLFAHFSEIQSNGFKTLEENQRVSYVTAMGPK 57
Query: 62 NGKYSAENLKLV 73
A ++L+
Sbjct: 58 G--PQATKIQLI 67
>gi|85713889|ref|ZP_01044878.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|85699015|gb|EAQ36883.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N
Sbjct: 1 MAKGIVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|322832164|ref|YP_004212191.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|321167365|gb|ADW73064.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
Length = 73
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+D+F H S + G L GQ V +D +
Sbjct: 1 MQTGTVKWFNNAKGFGFICPQN---GGEDIFAHYSTIQMEGYRTLKAGQQVNFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|197116608|ref|YP_002137035.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|197085968|gb|ACH37239.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF+H SA+ G +L EG VT+D Q
Sbjct: 1 MAKGVVKWFNDSKGFGFIEQEN----GEDVFVHFSAIQGDGFKSLAEGDSVTFDVQQGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|163842703|ref|YP_001627107.1| ATP/GTP-binding motif-containing protein [Brucella suis ATCC
23445]
gi|163673426|gb|ABY37537.1| ATP/GTP-binding site motif A (P-loop) protein [Brucella suis ATCC
23445]
Length = 69
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P+ DVF+H SAV AGL +L +GQ V Y+ V +
Sbjct: 1 MANGTVKFFNSTKGFGFIQPDD---GSSDVFVHISAVERAGLHSLVQGQKVGYEVVADRR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKSAAANLE 67
>gi|310658174|ref|YP_003935895.1| major cold shock protein [Clostridium sticklandii DSM 519]
gi|308824952|emb|CBH20990.1| major cold shock protein [Clostridium sticklandii]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ E DVF+H SA+ S G +L EGQ V ++ V D
Sbjct: 1 MKNGIVKWFNAEKGFGFISVE----GEKDVFVHFSAIQSEGYRSLEEGQEVQFEIVDGDK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTRI 66
>gi|161525563|ref|YP_001580575.1| cold-shock DNA-binding domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189349709|ref|YP_001945337.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221201211|ref|ZP_03574251.1| conserved domain protein [Burkholderia multivorans CGD2M]
gi|221206335|ref|ZP_03579348.1| conserved domain protein [Burkholderia multivorans CGD2]
gi|221213617|ref|ZP_03586591.1| conserved domain protein [Burkholderia multivorans CGD1]
gi|160342992|gb|ABX16078.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC 17616]
gi|189333731|dbj|BAG42801.1| CspA family cold shock protein [Burkholderia multivorans ATCC
17616]
gi|221166406|gb|EED98878.1| conserved domain protein [Burkholderia multivorans CGD1]
gi|221173644|gb|EEE06078.1| conserved domain protein [Burkholderia multivorans CGD2]
gi|221179061|gb|EEE11468.1| conserved domain protein [Burkholderia multivorans CGD2M]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAL 67
>gi|52080703|ref|YP_079494.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
gi|52786076|ref|YP_091905.1| CspD [Bacillus licheniformis ATCC 14580]
gi|154686439|ref|YP_001421600.1| CspD [Bacillus amyloliquefaciens FZB42]
gi|296329499|ref|ZP_06871986.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674824|ref|YP_003866496.1| RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str.
W23]
gi|308173984|ref|YP_003920689.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus amyloliquefaciens DSM 7]
gi|311068704|ref|YP_003973627.1| RNA-helicase co-factor [Bacillus atrophaeus 1942]
gi|319645338|ref|ZP_07999571.1| cold shock protein cspD [Bacillus sp. BT1B_CT2]
gi|52003914|gb|AAU23856.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
gi|52348578|gb|AAU41212.1| CspD [Bacillus licheniformis ATCC 14580]
gi|154352290|gb|ABS74369.1| CspD [Bacillus amyloliquefaciens FZB42]
gi|296153381|gb|EFG94243.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413068|gb|ADM38187.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus subtilis subsp. spizizenii str. W23]
gi|307606848|emb|CBI43219.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus amyloliquefaciens DSM 7]
gi|310869221|gb|ADP32696.1| RNA-helicase co-factor [Bacillus atrophaeus 1942]
gi|317393147|gb|EFV73941.1| cold shock protein cspD [Bacillus sp. BT1B_CT2]
gi|328553088|gb|AEB23580.1| RNA-helicase co-factor [Bacillus amyloliquefaciens TA208]
gi|328912139|gb|AEB63735.1| Cold-shock protein, molecular chaperone, RNA-helicase co-factor
[Bacillus amyloliquefaciens LL3]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGEGYKSLEEGQEVSFEIVEGNR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNVVKL 66
>gi|238025342|ref|YP_002909574.1| Cold-shock DNA-binding domain-containing protein [Burkholderia
glumae BGR1]
gi|237880007|gb|ACR32339.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFITP+ +DVF+H S + +G +L + Q V Y+
Sbjct: 1 MYTGTVKWFNDAKGFGFITPDD---GSEDVFVHFSEIQVSGFKSLQDSQRVRYEVRTGPK 57
Query: 62 NGKYSAENLKLV 73
A +++ +
Sbjct: 58 GK--QAADVQPI 67
>gi|256391097|ref|YP_003112661.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256357323|gb|ACU70820.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI +G G DVF+H SA++ +G NL E Q V ++ Q
Sbjct: 1 MATGKVKWFNGEKGFGFIEQDG---GGPDVFVHFSAISGSGYRNLEENQAVEFNVTQGPK 57
Query: 62 NGKYSAENLKLV 73
AE+++ +
Sbjct: 58 G--PQAEDVRGL 67
>gi|207722622|ref|YP_002253058.1| cold shock-like protein [Ralstonia solanacearum MolK2]
gi|300696567|ref|YP_003747228.1| Cold shock DNA binding protein (transcriptional regulator)
[Ralstonia solanacearum CFBP2957]
gi|206587804|emb|CAQ18386.1| cold shock-like protein [Ralstonia solanacearum MolK2]
gi|299073291|emb|CBJ52800.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum CFBP2957]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G D+F H S + AG L +GQ V+++ Q
Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGAGFKTLKDGQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKL 72
A +K
Sbjct: 58 G--LQASGIKP 66
>gi|54301716|ref|YP_131709.1| putative cold shock-like protein [Photobacterium profundum SS9]
gi|46915136|emb|CAG21909.1| putative Cold shock-like protein [Photobacterium profundum SS9]
Length = 79
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 14 TTGLVKWFNEDKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 70
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 71 --PQAANVVAL 79
>gi|116750635|ref|YP_847322.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116699699|gb|ABK18887.1| cold-shock DNA-binding protein family [Syntrophobacter
fumaroxidans MPOB]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI T DVF+H SA+A+ G +L+EG+ VT+D +
Sbjct: 1 MSEGRVKWFNDKKGYGFIE----TTDQGDVFVHYSAIAAEGFRSLSEGERVTFDVERGPK 56
Query: 62 NGKYSAENLKLVP 74
A N+K V
Sbjct: 57 G--PQAVNVKKVE 67
>gi|331005216|ref|ZP_08328609.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
gi|330420959|gb|EGG95232.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
Length = 68
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H SA+ +G LTEGQ V + Q
Sbjct: 4 TTGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIQGSGFKTLTEGQKVEFTVTQGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ V
Sbjct: 60 --PQAENINPV 68
>gi|320539592|ref|ZP_08039257.1| cold shock protein [Serratia symbiotica str. Tucson]
gi|320030351|gb|EFW12365.1| cold shock protein [Serratia symbiotica str. Tucson]
Length = 73
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+DVF H S + G L GQ V++D Q
Sbjct: 1 MEMGTVKWFNNAKGFGFICPES---GGEDVFAHYSTIKMDGYRTLKAGQQVSFDVYQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|148266030|ref|YP_001232736.1| cold-shock DNA-binding domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399530|gb|ABQ28163.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
Rf4]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI E G+DVF+H SA+ G L EG VT+D V+
Sbjct: 1 MEKGTVKWFNESKGFGFIAREN----GEDVFVHFSAITGEGFKTLAEGDTVTFDVVKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 57 G--LQAANVKKV 66
>gi|326792190|ref|YP_004310011.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
gi|326542954|gb|ADZ84813.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
Length = 65
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ Q +
Sbjct: 2 TGTVKWFNAEKGFGFIARED----GDDVFVHFSAIQGDGYKTLEEGQKVNFEITQGNRG- 56
Query: 64 KYSAENLK 71
AEN+
Sbjct: 57 -AQAENVT 63
>gi|189426235|ref|YP_001953412.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
gi|189422494|gb|ACD96892.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF H SA+ S G +L EG+ V++D VQ
Sbjct: 1 MAQGKVKWFNDTKGFGFIEQE----GGEDVFAHFSAIQSEGFKSLAEGESVSFDIVQGPK 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--LQAANIVKLK 67
>gi|153854155|ref|ZP_01995463.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814]
gi|149753204|gb|EDM63135.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814]
Length = 65
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI S G DVF+H S + G L EGQ V Y+ +
Sbjct: 2 KGTVKWFNNQKGYGFI----SDAEGHDVFVHYSGLNMEGFKTLEEGQEVEYEVTEGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAVNVTPL 65
>gi|126735271|ref|ZP_01751017.1| cold shock family protein [Roseobacter sp. CCS2]
gi|126715826|gb|EBA12691.1| cold shock family protein [Roseobacter sp. CCS2]
Length = 69
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G D+F+H SAV +GL L + Q VT+D ++
Sbjct: 1 MPNGTVKWFNTTKGYGFIAPDD---GGADIFVHISAVEQSGLTGLADDQKVTFDLIEG-R 56
Query: 62 NGKYSAENLKLVP 74
+G+ A N+ V
Sbjct: 57 DGRQMAGNIAKVE 69
>gi|77465630|ref|YP_355133.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
gi|77390048|gb|ABA81232.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
Length = 68
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P DVF+H +A+ AG+ L +GQ +TYD + D
Sbjct: 1 MANGTVKWFNATKGFGFIAPA---HGSKDVFVHVTALERAGIRQLNDGQALTYDM-ETDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|17548223|ref|NP_521563.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|300693045|ref|YP_003749018.1| cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum PSI07]
gi|17430469|emb|CAD17153.1| probable cold shock-like transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|299068439|emb|CBJ39662.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum CMR15]
gi|299075082|emb|CBJ34363.1| Cold shock DNA binding protein (transcription regulator)
[Ralstonia solanacearum PSI07]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+G G D+F H S + +G L +GQ V+++ Q
Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPK 57
Query: 62 NGKYSAENLKL 72
A +K
Sbjct: 58 G--LQASGIKP 66
>gi|21222717|ref|NP_628496.1| cold shock protein B [Streptomyces coelicolor A3(2)]
gi|256786208|ref|ZP_05524639.1| cold shock protein B [Streptomyces lividans TK24]
gi|289770100|ref|ZP_06529478.1| cold shock protein B [Streptomyces lividans TK24]
gi|8249978|emb|CAB93399.1| cold shock protein B [Streptomyces coelicolor A3(2)]
gi|289700299|gb|EFD67728.1| cold shock protein B [Streptomyces lividans TK24]
Length = 127
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ +L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVESLKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L L+ + +
Sbjct: 56 GD--QALSLALLDPAPS 70
>gi|15600954|ref|NP_232584.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
O1 biovar eltor str. N16961]
gi|121586738|ref|ZP_01676521.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80]
gi|121728217|ref|ZP_01681251.1| cold shock DNA-binding domain protein [Vibrio cholerae V52]
gi|147671812|ref|YP_001215928.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
O395]
gi|153214423|ref|ZP_01949394.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587]
gi|153802359|ref|ZP_01956945.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3]
gi|153816780|ref|ZP_01969447.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457]
gi|153825010|ref|ZP_01977677.1| conserved domain protein [Vibrio cholerae MZO-2]
gi|153830508|ref|ZP_01983175.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39]
gi|227811808|ref|YP_002811818.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2]
gi|229506650|ref|ZP_04396159.1| cold shock protein CspE [Vibrio cholerae BX 330286]
gi|229510552|ref|ZP_04400032.1| cold shock protein CspE [Vibrio cholerae B33]
gi|229514684|ref|ZP_04404145.1| cold shock protein CspE [Vibrio cholerae TMA 21]
gi|229517316|ref|ZP_04406761.1| cold shock protein CspE [Vibrio cholerae RC9]
gi|229522853|ref|ZP_04412267.1| cold shock protein CspE [Vibrio cholerae TM 11079-80]
gi|229526190|ref|ZP_04415594.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426]
gi|229527836|ref|ZP_04417227.1| cold shock protein CspE [Vibrio cholerae 12129(1)]
gi|229605127|ref|YP_002875831.1| cold shock protein CspE [Vibrio cholerae MJ-1236]
gi|254225227|ref|ZP_04918840.1| cold shock DNA-binding domain protein [Vibrio cholerae V51]
gi|254286678|ref|ZP_04961633.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226]
gi|254850617|ref|ZP_05239967.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
MO10]
gi|255746005|ref|ZP_05419952.1| cold shock protein CspE [Vibrio cholera CIRS 101]
gi|258620062|ref|ZP_05715101.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573]
gi|258624862|ref|ZP_05719790.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603]
gi|261212646|ref|ZP_05926930.1| cold shock protein CspE [Vibrio sp. RC341]
gi|262162157|ref|ZP_06031172.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1]
gi|262164800|ref|ZP_06032538.1| cold shock protein CspE [Vibrio mimicus VM223]
gi|262167820|ref|ZP_06035521.1| cold shock protein CspE [Vibrio cholerae RC27]
gi|262172987|ref|ZP_06040664.1| cold shock protein CspE [Vibrio mimicus MB-451]
gi|262403363|ref|ZP_06079923.1| cold shock protein CspE [Vibrio sp. RC586]
gi|297579689|ref|ZP_06941616.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
RC385]
gi|298500039|ref|ZP_07009845.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
MAK 757]
gi|9657576|gb|AAF96097.1| cold shock DNA-binding domain protein [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121549035|gb|EAX59072.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80]
gi|121629540|gb|EAX61964.1| cold shock DNA-binding domain protein [Vibrio cholerae V52]
gi|124115372|gb|EAY34192.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587]
gi|124122078|gb|EAY40821.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3]
gi|125622326|gb|EAZ50647.1| cold shock DNA-binding domain protein [Vibrio cholerae V51]
gi|126512583|gb|EAZ75177.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457]
gi|146314195|gb|ABQ18735.1| cold shock DNA-binding domain protein [Vibrio cholerae O395]
gi|148874003|gb|EDL72138.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39]
gi|149741335|gb|EDM55369.1| conserved domain protein [Vibrio cholerae MZO-2]
gi|150423262|gb|EDN15208.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226]
gi|227010950|gb|ACP07161.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2]
gi|227014809|gb|ACP11018.1| cold shock DNA-binding domain protein [Vibrio cholerae O395]
gi|229334198|gb|EEN99683.1| cold shock protein CspE [Vibrio cholerae 12129(1)]
gi|229336348|gb|EEO01366.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426]
gi|229340070|gb|EEO05078.1| cold shock protein CspE [Vibrio cholerae TM 11079-80]
gi|229345352|gb|EEO10325.1| cold shock protein CspE [Vibrio cholerae RC9]
gi|229348664|gb|EEO13622.1| cold shock protein CspE [Vibrio cholerae TMA 21]
gi|229352997|gb|EEO17937.1| cold shock protein CspE [Vibrio cholerae B33]
gi|229357001|gb|EEO21919.1| cold shock protein CspE [Vibrio cholerae BX 330286]
gi|229371613|gb|ACQ62035.1| cold shock protein CspE [Vibrio cholerae MJ-1236]
gi|254846322|gb|EET24736.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
MO10]
gi|255735759|gb|EET91157.1| cold shock protein CspE [Vibrio cholera CIRS 101]
gi|258582860|gb|EEW07681.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603]
gi|258587420|gb|EEW12130.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573]
gi|260837711|gb|EEX64388.1| cold shock protein CspE [Vibrio sp. RC341]
gi|261890345|gb|EEY36332.1| cold shock protein CspE [Vibrio mimicus MB-451]
gi|262023728|gb|EEY42428.1| cold shock protein CspE [Vibrio cholerae RC27]
gi|262027180|gb|EEY45847.1| cold shock protein CspE [Vibrio mimicus VM223]
gi|262028232|gb|EEY46890.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1]
gi|262350862|gb|EEY99995.1| cold shock protein CspE [Vibrio sp. RC586]
gi|297535335|gb|EFH74169.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
RC385]
gi|297542020|gb|EFH78071.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
MAK 757]
gi|327485405|gb|AEA79811.1| Cold shock protein CspE [Vibrio cholerae LMA3894-4]
Length = 69
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIKQEN----GPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG- 60
Query: 64 KYSAENLKLV 73
AE++K++
Sbjct: 61 -PQAESIKVL 69
>gi|332526824|ref|ZP_08402924.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
gi|332111225|gb|EGJ11257.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
Length = 69
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFITP+ G D+F H + G L E Q V ++ Q
Sbjct: 4 ETGTVKWFNESKGYGFITPD---AGGKDLFAHFKEIQGTGFKTLAENQRVEFEVTQGQKG 60
Query: 63 GKYSAENLKLV 73
A ++ +
Sbjct: 61 --PQASRIRAI 69
>gi|329296326|ref|ZP_08253662.1| Cold shock-like protein cspC [Plautia stali symbiont]
Length = 69
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLVEGQRVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|328884184|emb|CCA57423.1| Cold shock protein CspC [Streptomyces venezuelae ATCC 10712]
Length = 127
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVDALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVTILDPTPS 70
>gi|284007335|emb|CBA72699.1| cold shock protein CspE [Arsenophonus nasoniae]
Length = 88
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITPEG G DVF+H +A+ G LT GQ V +D +
Sbjct: 24 TGTVKWFNETKGFGFITPEG---GGKDVFVHYTAIDVNGFKTLTVGQKVEFDIQEGSKG- 79
Query: 64 KYSAENLKLV 73
+A N+ ++
Sbjct: 80 -SAANNVTII 88
>gi|222099783|ref|YP_002534351.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
4359]
gi|221572173|gb|ACM22985.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
4359]
Length = 78
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW++ KGYGFIT E G+D+F+H SA+ G L E + V +D Q
Sbjct: 14 RGTVKWFDSKKGYGFITMEN----GEDIFVHWSAIQMDGFKTLRENEPVEFDVQQGTKG- 68
Query: 64 KYSAENLKLV 73
A N++ V
Sbjct: 69 -PQAVNVRPV 77
>gi|149915747|ref|ZP_01904272.1| cold shock protein CspA [Roseobacter sp. AzwK-3b]
gi|149810329|gb|EDM70174.1| cold shock protein CspA [Roseobacter sp. AzwK-3b]
Length = 68
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG G DVF+H SAV AGL L + Q VT+D +
Sbjct: 1 MANGTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESAANIAL 67
>gi|283784399|ref|YP_003364264.1| cold shock-like protein [Citrobacter rodentium ICC168]
gi|62126861|gb|AAX64564.1| RNA chaperone, negative regulator of cspA transcription
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|282947853|emb|CBG87413.1| cold shock-like protein [Citrobacter rodentium ICC168]
Length = 79
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 15 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 70
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 71 -PSAANVTAL 79
>gi|223932623|ref|ZP_03624623.1| cold-shock DNA-binding domain protein [Streptococcus suis
89/1591]
gi|302023415|ref|ZP_07248626.1| cold shock protein [Streptococcus suis 05HAS68]
gi|330832233|ref|YP_004401058.1| cold-shock DNA-binding domain-containing protein [Streptococcus
suis ST3]
gi|223898733|gb|EEF65094.1| cold-shock DNA-binding domain protein [Streptococcus suis
89/1591]
gi|329306456|gb|AEB80872.1| cold-shock DNA-binding domain protein [Streptococcus suis ST3]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF H S + S +L EGQ VT++ Q
Sbjct: 1 MVQGTVKWFNAEKGFGFIAQEN----GPDVFAHFSEIQSNSFKSLEEGQKVTFEVEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQATNITKI 66
>gi|169825043|ref|YP_001692654.1| cold shock protein [Finegoldia magna ATCC 29328]
gi|302379354|ref|ZP_07267841.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3]
gi|167831848|dbj|BAG08764.1| cold shock protein [Finegoldia magna ATCC 29328]
gi|302312699|gb|EFK94693.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFIT E D+F+H+SA+ G L EGQ V+YD +D
Sbjct: 1 MSNGTVKWFNSTKGFGFITGED----NKDIFVHQSAIQEEGFRTLEEGQKVSYDVEASDK 56
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 57 GDR--AVNVVKL 66
>gi|49484900|ref|YP_042124.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
gi|87160637|ref|YP_495273.1| cold shock protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196660|ref|YP_501491.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|257424187|ref|ZP_05600616.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257426864|ref|ZP_05603266.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429500|ref|ZP_05605887.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257432147|ref|ZP_05608510.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410]
gi|257435108|ref|ZP_05611159.1| cold shock protein [Staphylococcus aureus subsp. aureus M876]
gi|258423247|ref|ZP_05686139.1| cold shock protein [Staphylococcus aureus A9635]
gi|258451377|ref|ZP_05699408.1| cold shock protein [Staphylococcus aureus A5948]
gi|282902622|ref|ZP_06310515.1| conserved domain protein [Staphylococcus aureus subsp. aureus
C160]
gi|282907038|ref|ZP_06314886.1| cold shock protein beta-ribbon CspA family protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282910016|ref|ZP_06317824.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282912264|ref|ZP_06320060.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282912904|ref|ZP_06320696.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282918059|ref|ZP_06325809.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
gi|282920709|ref|ZP_06328428.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A9765]
gi|282921281|ref|ZP_06328999.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
gi|282922532|ref|ZP_06330222.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus C101]
gi|283767781|ref|ZP_06340696.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
aureus subsp. aureus H19]
gi|283959475|ref|ZP_06376916.1| conserved domain protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293497957|ref|ZP_06665811.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus 58-424]
gi|293511547|ref|ZP_06670241.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus M809]
gi|293550156|ref|ZP_06672828.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|294849818|ref|ZP_06790558.1| cold shock protein [Staphylococcus aureus A9754]
gi|49243029|emb|CAG41763.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
gi|87126611|gb|ABD21125.1| cold shock protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87204218|gb|ABD32028.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|257273205|gb|EEV05307.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257276495|gb|EEV07946.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279981|gb|EEV10568.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257283026|gb|EEV13158.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410]
gi|257285704|gb|EEV15820.1| cold shock protein [Staphylococcus aureus subsp. aureus M876]
gi|257846576|gb|EEV70598.1| cold shock protein [Staphylococcus aureus A9635]
gi|257860907|gb|EEV83724.1| cold shock protein [Staphylococcus aureus A5948]
gi|282314753|gb|EFB45139.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus C101]
gi|282315696|gb|EFB46080.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
gi|282318344|gb|EFB48704.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
gi|282323004|gb|EFB53323.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282323960|gb|EFB54276.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282326082|gb|EFB56387.1| cold shock domain-containing protein CspD [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282329937|gb|EFB59458.1| cold shock protein beta-ribbon CspA family protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282594117|gb|EFB99105.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A9765]
gi|282597081|gb|EFC02040.1| conserved domain protein [Staphylococcus aureus subsp. aureus
C160]
gi|283461660|gb|EFC08744.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
aureus subsp. aureus H19]
gi|283789067|gb|EFC27894.1| conserved domain protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290919203|gb|EFD96279.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|291096888|gb|EFE27146.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus subsp. aureus 58-424]
gi|291465505|gb|EFF08037.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus M809]
gi|294823366|gb|EFG39795.1| cold shock protein [Staphylococcus aureus A9754]
Length = 75
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H S +AS G L EGQ VT++ +
Sbjct: 10 MNNGTVKWFNAEKGFGFIEQEN----GGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 65
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 66 GD--QAVNVQTV 75
>gi|312881480|ref|ZP_07741272.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370846|gb|EFP98306.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 73
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57
Query: 62 NGKYSAENLKLVP 74
Y A ++ V
Sbjct: 58 G--YHARSVVPVE 68
>gi|317047537|ref|YP_004115185.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|316949154|gb|ADU68629.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
Length = 73
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D +
Sbjct: 1 METGTVKWFNNAKGFGFICPIG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|329295571|ref|ZP_08252907.1| cold shock protein CspE [Plautia stali symbiont]
Length = 69
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITDGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVTAL 69
>gi|240146141|ref|ZP_04744742.1| putative cold shock protein [Roseburia intestinalis L1-82]
gi|257201740|gb|EEV00025.1| putative cold shock protein [Roseburia intestinalis L1-82]
gi|291537505|emb|CBL10617.1| cold-shock DNA-binding protein family [Roseburia intestinalis
M50/1]
gi|291540033|emb|CBL13144.1| cold-shock DNA-binding protein family [Roseburia intestinalis
XB6B4]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V ++ V+
Sbjct: 1 MNKGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLEEGATVEFEVVEGAK 56
Query: 62 NGKYSAENLKLVP 74
A N+ +V
Sbjct: 57 G--PQATNVTVVK 67
>gi|163735236|ref|ZP_02142671.1| cold shock protein CspA [Roseobacter litoralis Och 149]
gi|161391450|gb|EDQ15784.1| cold shock protein CspA [Roseobacter litoralis Och 149]
Length = 68
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G D+F+H SAV AGL L + Q VT++ +
Sbjct: 1 MASGTVKWFNTTKGYGFIAPDN---GGKDIFVHISAVERAGLTGLADNQKVTFEI-ETSR 56
Query: 62 NGKYSAENLKL 72
+G+ SA +L +
Sbjct: 57 DGRESASDLAI 67
>gi|125974357|ref|YP_001038267.1| cold-shock DNA-binding protein family protein [Clostridium
thermocellum ATCC 27405]
gi|256005564|ref|ZP_05430524.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
DSM 2360]
gi|281418904|ref|ZP_06249922.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
JW20]
gi|125714582|gb|ABN53074.1| cold-shock DNA-binding protein family [Clostridium thermocellum
ATCC 27405]
gi|255990472|gb|EEU00594.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
DSM 2360]
gi|281407361|gb|EFB37621.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
JW20]
gi|316941515|gb|ADU75549.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
DSM 1313]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KG+GFI E G DVF+H SA+ G L EG V ++ V+
Sbjct: 1 MERGRVKWFNAEKGFGFIERE----GGKDVFVHFSAINMDGYKTLEEGAEVEFEVVEGAK 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|297158325|gb|ADI08037.1| cold shock protein [Streptomyces bingchenggensis BCW-1]
Length = 127
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + G+ +L GQ V + V +
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PEGVDSLKPGQRVEFGVVAGNR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVTVLDPTPS 70
>gi|225377225|ref|ZP_03754446.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans
DSM 16841]
gi|225210929|gb|EEG93283.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans
DSM 16841]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V ++ V+
Sbjct: 1 MNKGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMEGFKSLEEGAAVEFEVVEGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +V
Sbjct: 57 G--PQATNVTVV 66
>gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
25827]
gi|188020258|gb|EDU58298.1| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
25827]
Length = 81
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++ +
Sbjct: 17 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIASEGFKTLAEGQKVEFEITEGAKG- 72
Query: 64 KYSAENL 70
SA N+
Sbjct: 73 -PSAVNV 78
>gi|84687901|ref|ZP_01015768.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664095|gb|EAQ10592.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
Length = 68
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV AG+ L + Q V+Y+ +
Sbjct: 1 MATGTVKWFNATKGYGFIAPDD---GGKDVFVHISAVERAGMTGLADNQKVSYEMIPG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +LK +
Sbjct: 57 DGRESAGDLKAL 68
>gi|330940302|gb|EGH43422.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 91
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EG + +D+F H SA+ G L GQ V ++ VQ
Sbjct: 1 MIEGKVKWFNNAKGFGFINAEG---NDEDLFAHFSAIEMDGYKTLKAGQKVRFEVVQGPK 57
Query: 62 NGKYSAENLK 71
A +K
Sbjct: 58 G--LHAVKIK 65
>gi|297193662|ref|ZP_06911060.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297151865|gb|EFH31383.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 127
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + +G+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PSGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+ + +
Sbjct: 56 GD--QALSVTLLDPTPS 70
>gi|228993896|ref|ZP_04153799.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM
12442]
gi|228999933|ref|ZP_04159505.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17]
gi|229007485|ref|ZP_04165082.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4]
gi|229087667|ref|ZP_04219793.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44]
gi|229164128|ref|ZP_04292064.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803]
gi|228619364|gb|EEK76254.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803]
gi|228695628|gb|EEL48487.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44]
gi|228753873|gb|EEM03314.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4]
gi|228759875|gb|EEM08849.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17]
gi|228765847|gb|EEM14498.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM
12442]
Length = 65
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G
Sbjct: 2 QGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQKVEFDIV-DGARG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVVKL 65
>gi|145589930|ref|YP_001156527.1| cold-shock DNA-binding domain-containing protein
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|171464060|ref|YP_001798173.1| cold-shock DNA-binding domain protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|145048336|gb|ABP34963.1| cold-shock DNA-binding protein family [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|171193598|gb|ACB44559.1| cold-shock DNA-binding domain protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 67
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI P+ +++F H SA+ G L E Q VT+D Q
Sbjct: 1 MATGIVKWFNDAKGFGFIKPDDGE---EELFAHFSAITMPGFKTLKENQKVTFDITQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|210608483|ref|ZP_03287859.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787]
gi|210153059|gb|EEA84065.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+DVF+H S + G +L EGQ V ++ +
Sbjct: 1 MNKGTVKWFNNQKGYGFISDEA----GNDVFVHYSGLNMEGFKSLEEGQEVEFEVTEGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVVKL 66
>gi|291534217|emb|CBL07330.1| cold-shock DNA-binding protein family [Megamonas hypermegale
ART12/1]
Length = 71
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFIT + D+F+H SA+ S G L EGQ VT+D +
Sbjct: 1 MGTGTVKWFNSGKGYGFITNDD---GSGDLFVHFSAINSEGFKTLEEGQKVTFDTEADSR 57
Query: 62 N-GKYSAENLKLVP 74
+ K A N+ +V
Sbjct: 58 DASKLRAVNVTVVK 71
>gi|269139554|ref|YP_003296255.1| cold shock protein [Edwardsiella tarda EIB202]
gi|267985215|gb|ACY85044.1| cold shock protein [Edwardsiella tarda EIB202]
gi|304559442|gb|ADM42106.1| Cold shock protein CspD [Edwardsiella tarda FL6-60]
Length = 73
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P GDD+F H +A+ G L GQ V +D
Sbjct: 1 METGTVKWFNNAKGFGFICPAS---GGDDIFAHYTAIQMEGYRTLKAGQQVQFDLHIGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|239636591|ref|ZP_04677593.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239637686|ref|ZP_04678656.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596711|gb|EEQ79238.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239597946|gb|EEQ80441.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|330684330|gb|EGG96063.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
gi|330684668|gb|EGG96370.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
Length = 66
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D
Sbjct: 1 MNNGTVKWFNSEKGFGFIERED----GSDVFVHFSAIAEEGYKSLEEGQKVEFDIVEGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--EQAANV 63
>gi|209695649|ref|YP_002263578.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238]
gi|208009601|emb|CAQ79897.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238]
Length = 73
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ VTY+ +
Sbjct: 1 MAIGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIEMDGYRTLKAGQAVTYEIHEGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
Y A +K + +
Sbjct: 58 G--YHASEIKPLEGEA 71
>gi|188584960|ref|YP_001916505.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349647|gb|ACB83917.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 68
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW++P KGYGFI E G+DVF+H SA+ G L EGQ V ++ Q D
Sbjct: 2 RGTVKWFDPKKGYGFIEKED---DGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKG- 57
Query: 64 KYSAENLKLVP 74
AEN+ ++
Sbjct: 58 -PQAENVVVME 67
>gi|307823664|ref|ZP_07653893.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307735649|gb|EFO06497.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 66
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G DVF+H + S+G +L EGQ V + Q
Sbjct: 1 MTTGTVKWFNAEKGFGFIQQEN----GPDVFVHFRNINSSGFKSLDEGQKVQFTVTQGQK 56
Query: 62 NGKYSAENLKLV 73
AE + ++
Sbjct: 57 G--PQAEEVTII 66
>gi|315499666|ref|YP_004088469.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
gi|315417678|gb|ADU14318.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
Length = 67
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ E G DVF+H SAV SAGL +L++GQ V+Y+ +
Sbjct: 1 MALGTVKWFNSIKGFGFIQPD---EGGIDVFVHASAVESAGLRSLSDGQKVSYEVQLD-- 55
Query: 62 NGKYSAENLKLV 73
G+ SA NL+++
Sbjct: 56 RGRSSASNLQII 67
>gi|254393855|ref|ZP_05008963.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064]
gi|326442535|ref|ZP_08217269.1| putative cold shock protein [Streptomyces clavuligerus ATCC
27064]
gi|197707450|gb|EDY53262.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064]
Length = 127
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + G+ +L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PDGVDSLKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVVVLDPTPS 70
>gi|115350919|ref|YP_772758.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria AMMD]
gi|170698521|ref|ZP_02889592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171315542|ref|ZP_02904778.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|172059932|ref|YP_001807584.1| cold-shock DNA-binding domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|115280907|gb|ABI86424.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
AMMD]
gi|170136605|gb|EDT04862.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
IOP40-10]
gi|171099379|gb|EDT44117.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MEX-5]
gi|171992449|gb|ACB63368.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
MC40-6]
Length = 67
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMDGFKTLKENQRVSFEVKLGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QAANIQAV 67
>gi|331007546|ref|ZP_08330704.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
gi|330418644|gb|EGG93152.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
Length = 78
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +GYGFI+ E + +D+F+H + S G +L EGQ V + + D
Sbjct: 12 RNTGTVKWFNNSRGYGFISCEAKS---EDIFVHYRNIQSEGYRSLNEGQSVEFSLAEGDK 68
Query: 62 NGKYSAENL 70
AE +
Sbjct: 69 G--LQAEEV 75
>gi|93006301|ref|YP_580738.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
cryohalolentis K5]
gi|92393979|gb|ABE75254.1| cold-shock DNA-binding protein family [Psychrobacter
cryohalolentis K5]
Length = 71
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI + SG+D+F+H A+ G +L +G+ V + V+ D
Sbjct: 4 REQGIVKWFNDSKGFGFIQRD----SGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59
Query: 62 NGKYSAENLKLVPK 75
AE ++ V +
Sbjct: 60 G--LQAEEVRKVEE 71
>gi|119385865|ref|YP_916920.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119376460|gb|ABL71224.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 68
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVFLH SA+ AGL ++ +GQ VT++ ++
Sbjct: 1 MANGTVKWFNAAKGFGFIAPE---HGGKDVFLHISALERAGLNSVADGQAVTFEI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA L L
Sbjct: 57 DGRESASRLAL 67
>gi|308068467|ref|YP_003870072.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681]
gi|305857746|gb|ADM69534.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681]
Length = 65
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KGYGFI + G+DVF+H SA+ G L EGQ V ++ + + G
Sbjct: 2 KGTVKWFNAEKGYGFIQMD----GGEDVFVHFSAIQGDGFKTLEEGQAVEFEITEGNR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium tuberculosis H37Rv]
gi|15843260|ref|NP_338297.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
CDC1551]
gi|31794818|ref|NP_857311.1| cold shock protein A [Mycobacterium bovis AF2122/97]
gi|41406521|ref|NP_959357.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118464580|ref|YP_879797.1| hypothetical protein MAV_0516 [Mycobacterium avium 104]
gi|121639561|ref|YP_979785.1| putative cold shock protein A cspA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148663511|ref|YP_001285034.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra]
gi|148824850|ref|YP_001289604.1| cold shock protein A cspA [Mycobacterium tuberculosis F11]
gi|167968570|ref|ZP_02550847.1| cold shock protein A cspA [Mycobacterium tuberculosis H37Ra]
gi|215405695|ref|ZP_03417876.1| cold shock protein A cspA [Mycobacterium tuberculosis 02_1987]
gi|215413568|ref|ZP_03422240.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
gi|215424892|ref|ZP_03422811.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
gi|215447984|ref|ZP_03434736.1| cold shock protein A cspA [Mycobacterium tuberculosis T85]
gi|218755426|ref|ZP_03534222.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
gi|219559719|ref|ZP_03538795.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
gi|224992058|ref|YP_002646747.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo
172]
gi|253800688|ref|YP_003033689.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435]
gi|254233144|ref|ZP_04926470.1| cold shock protein A cspA [Mycobacterium tuberculosis C]
gi|254366198|ref|ZP_04982242.1| cold shock protein A cspA [Mycobacterium tuberculosis str.
Haarlem]
gi|254552760|ref|ZP_05143207.1| cold shock protein A cspA [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|254773485|ref|ZP_05215001.1| putative cold shock protein A [Mycobacterium avium subsp. avium
ATCC 25291]
gi|260184565|ref|ZP_05762039.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
gi|260198688|ref|ZP_05766179.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
gi|260202831|ref|ZP_05770322.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
gi|289441078|ref|ZP_06430822.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
gi|289445242|ref|ZP_06434986.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
gi|289555909|ref|ZP_06445119.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605]
gi|289571885|ref|ZP_06452112.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
gi|289572295|ref|ZP_06452522.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
gi|289747484|ref|ZP_06506862.1| cold shock protein A [Mycobacterium tuberculosis 02_1987]
gi|289748162|ref|ZP_06507540.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
gi|289759803|ref|ZP_06519181.1| cold shock protein A [Mycobacterium tuberculosis T85]
gi|289763825|ref|ZP_06523203.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
gi|294995441|ref|ZP_06801132.1| cold shock protein A cspA [Mycobacterium tuberculosis 210]
gi|297636323|ref|ZP_06954103.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207]
gi|297733316|ref|ZP_06962434.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN R506]
gi|298527122|ref|ZP_07014531.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
gi|306778001|ref|ZP_07416338.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001]
gi|306778534|ref|ZP_07416871.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002]
gi|306786555|ref|ZP_07424877.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003]
gi|306790921|ref|ZP_07429243.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004]
gi|306791241|ref|ZP_07429543.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005]
gi|306796028|ref|ZP_07434330.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006]
gi|306801275|ref|ZP_07437943.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008]
gi|306805489|ref|ZP_07442157.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007]
gi|306969780|ref|ZP_07482441.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009]
gi|306974119|ref|ZP_07486780.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010]
gi|307081827|ref|ZP_07490997.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011]
gi|307086441|ref|ZP_07495554.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012]
gi|313660648|ref|ZP_07817528.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN V2475]
gi|54036917|sp|P63849|CSPA_MYCBO RecName: Full=Probable cold shock protein A
gi|54040914|sp|P63848|CSPA_MYCTU RecName: Full=Probable cold shock protein A
gi|2105046|emb|CAB08840.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium tuberculosis
H37Rv]
gi|13883617|gb|AAK48111.1| cold-shock domain family protein [Mycobacterium tuberculosis
CDC1551]
gi|31620415|emb|CAD95858.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium bovis
AF2122/97]
gi|41394870|gb|AAS02740.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165867|gb|ABK66764.1| conserved domain protein [Mycobacterium avium 104]
gi|121495209|emb|CAL73695.1| Probable cold shock protein A cspA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124602937|gb|EAY61212.1| cold shock protein A cspA [Mycobacterium tuberculosis C]
gi|134151710|gb|EBA43755.1| cold shock protein A cspA [Mycobacterium tuberculosis str.
Haarlem]
gi|148507663|gb|ABQ75472.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra]
gi|148723377|gb|ABR08002.1| cold shock protein A cspA [Mycobacterium tuberculosis F11]
gi|224775173|dbj|BAH27979.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo
172]
gi|253322191|gb|ACT26794.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435]
gi|289413997|gb|EFD11237.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
gi|289418200|gb|EFD15401.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
gi|289440541|gb|EFD23034.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605]
gi|289536726|gb|EFD41304.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
gi|289545639|gb|EFD49287.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
gi|289688012|gb|EFD55500.1| cold shock protein A [Mycobacterium tuberculosis 02_1987]
gi|289688749|gb|EFD56178.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
gi|289711331|gb|EFD75347.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
gi|289715367|gb|EFD79379.1| cold shock protein A [Mycobacterium tuberculosis T85]
gi|298496916|gb|EFI32210.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
gi|308213712|gb|EFO73111.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001]
gi|308328442|gb|EFP17293.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002]
gi|308328877|gb|EFP17728.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003]
gi|308332717|gb|EFP21568.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004]
gi|308340210|gb|EFP29061.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005]
gi|308343496|gb|EFP32347.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006]
gi|308347996|gb|EFP36847.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007]
gi|308351938|gb|EFP40789.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008]
gi|308352698|gb|EFP41549.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009]
gi|308356572|gb|EFP45423.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010]
gi|308360530|gb|EFP49381.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011]
gi|308364142|gb|EFP52993.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012]
gi|323717697|gb|EGB26898.1| cold shock protein A cspA [Mycobacterium tuberculosis CDC1551A]
gi|326905483|gb|EGE52416.1| cold shock protein A cspA [Mycobacterium tuberculosis W-148]
gi|328460418|gb|AEB05841.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207]
Length = 67
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + G L E Q V ++ +
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPK 57
Query: 62 NGKYSAENLK 71
A ++
Sbjct: 58 G--PQATGVR 65
>gi|300723585|ref|YP_003712890.1| cold shock protein, transcription antiterminator [Xenorhabdus
nematophila ATCC 19061]
gi|297630107|emb|CBJ90744.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus nematophila
ATCC 19061]
Length = 69
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFITP DVF+H SA+ G L+EGQ V ++
Sbjct: 5 TGTVKWFNESKGFGFITPAD---GSKDVFVHFSAIVKDGFKTLSEGQQVEFEIQDGPKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAANVSAL 69
>gi|163733825|ref|ZP_02141267.1| cold shock protein CspA-related protein, putative [Roseobacter
litoralis Och 149]
gi|161392936|gb|EDQ17263.1| cold shock protein CspA-related protein, putative [Roseobacter
litoralis Och 149]
Length = 68
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV AGL L++ Q VT+D +
Sbjct: 1 MATGTVKWFNSTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLSDDQKVTFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESASNLAL 67
>gi|300722306|ref|YP_003711591.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Xenorhabdus nematophila ATCC 19061]
gi|297628808|emb|CBJ89386.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Xenorhabdus nematophila ATCC 19061]
Length = 69
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S+G L EGQ V ++ + D
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIKSSGFKTLAEGQKVEFEITEGDKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVVAI 69
>gi|260774155|ref|ZP_05883070.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14]
gi|260611116|gb|EEX36320.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14]
Length = 69
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ S G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIKQEN----GPDVFAHFSAIQSEGFRTLAEGQKVEFVITQGQKG- 60
Query: 64 KYSAENLKLV 73
AE++K++
Sbjct: 61 -PQAESIKVL 69
>gi|323483950|ref|ZP_08089323.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum
WAL-14163]
gi|323693454|ref|ZP_08107665.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323402666|gb|EGA94991.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum
WAL-14163]
gi|323502509|gb|EGB18360.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 66
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFI E G+D+F+H S +A G +L +GQ VTYD Q +
Sbjct: 1 MNKGTVKWFNSQKGFGFICGEN----GEDIFVHFSGLAMDGYKSLEDGQEVTYDIAQGNR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--LQAVNVSV 65
>gi|261251425|ref|ZP_05943999.1| cold shock protein CspE [Vibrio orientalis CIP 102891]
gi|260938298|gb|EEX94286.1| cold shock protein CspE [Vibrio orientalis CIP 102891]
Length = 69
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V +
Sbjct: 6 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSAITGDGFRTLVEGQKVEFVVTTGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+K++
Sbjct: 61 -PQAENIKVL 69
>gi|164688479|ref|ZP_02212507.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM
16795]
gi|164602892|gb|EDQ96357.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM
16795]
Length = 66
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ EG DVF+H SA+ G +L EGQ V +D V+ A
Sbjct: 1 MKTGVVKWFNNEKGFGFISVEGEG----DVFVHFSAIQCDGYKSLEEGQNVEFDVVEG-A 55
Query: 62 NGKYSAENLKL 72
G +A ++L
Sbjct: 56 KGPQAANVVRL 66
>gi|110804727|ref|YP_688247.1| cold shock protein CspE [Shigella flexneri 5 str. 8401]
gi|110614275|gb|ABF02942.1| cold shock protein [Shigella flexneri 5 str. 8401]
gi|281600039|gb|ADA73023.1| Cold shock protein [Shigella flexneri 2002017]
Length = 97
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 33 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 88
Query: 64 KYSAENL 70
SA N+
Sbjct: 89 -PSAANV 94
>gi|148258722|ref|YP_001243307.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|146410895|gb|ABQ39401.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
Length = 69
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V +D +
Sbjct: 1 MPQGTVKWFNGQKGFGFIQPQD---GGTDVFVHISAVERAGLGGLAEGQKVNFDLKTDKM 57
Query: 62 NGKYSAENLKL 72
GK SAENL L
Sbjct: 58 RGKVSAENLSL 68
>gi|225873881|ref|YP_002755340.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
gi|225792075|gb|ACO32165.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
Length = 66
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI+ ++G+DVF+H SA++S G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFISR----QNGEDVFVHYSAISSNGFRSLQEGQAVQFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ A +++ +
Sbjct: 57 G--WQAADVQPL 66
>gi|253700127|ref|YP_003021316.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
gi|251774977|gb|ACT17558.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 68
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI + G+DVF+H SA+ G +L EG+ V++D
Sbjct: 1 MAQGKVKWFNDAKGFGFIEQDN----GEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--LQAANVKKI 66
>gi|229505263|ref|ZP_04394773.1| cold shock protein CspD [Vibrio cholerae BX 330286]
gi|229511067|ref|ZP_04400546.1| cold shock protein CspD [Vibrio cholerae B33]
gi|229515525|ref|ZP_04404984.1| cold shock protein CspD [Vibrio cholerae TMA 21]
gi|229518187|ref|ZP_04407631.1| cold shock protein CspD [Vibrio cholerae RC9]
gi|229520428|ref|ZP_04409853.1| cold shock protein CspD [Vibrio cholerae TM 11079-80]
gi|229525753|ref|ZP_04415158.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426]
gi|229529769|ref|ZP_04419159.1| cold shock protein CspD [Vibrio cholerae 12129(1)]
gi|229608282|ref|YP_002878930.1| cold shock protein CspD [Vibrio cholerae MJ-1236]
gi|255745554|ref|ZP_05419502.1| cold shock protein CspD [Vibrio cholera CIRS 101]
gi|262158372|ref|ZP_06029488.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1]
gi|262170184|ref|ZP_06037872.1| cold shock protein CspD [Vibrio cholerae RC27]
gi|229333543|gb|EEN99029.1| cold shock protein CspD [Vibrio cholerae 12129(1)]
gi|229339334|gb|EEO04351.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426]
gi|229342526|gb|EEO07519.1| cold shock protein CspD [Vibrio cholerae TM 11079-80]
gi|229344902|gb|EEO09876.1| cold shock protein CspD [Vibrio cholerae RC9]
gi|229347294|gb|EEO12254.1| cold shock protein CspD [Vibrio cholerae TMA 21]
gi|229351032|gb|EEO15973.1| cold shock protein CspD [Vibrio cholerae B33]
gi|229357486|gb|EEO22403.1| cold shock protein CspD [Vibrio cholerae BX 330286]
gi|229370937|gb|ACQ61360.1| cold shock protein CspD [Vibrio cholerae MJ-1236]
gi|255736629|gb|EET92026.1| cold shock protein CspD [Vibrio cholera CIRS 101]
gi|262021353|gb|EEY40066.1| cold shock protein CspD [Vibrio cholerae RC27]
gi|262029813|gb|EEY48461.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1]
gi|327483846|gb|AEA78253.1| Cold shock protein CspD [Vibrio cholerae LMA3894-4]
Length = 73
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|330446014|ref|ZP_08309666.1| cold-shock domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490205|dbj|GAA04163.1| cold-shock domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+ G +L EGQ V++D Q
Sbjct: 4 ATGIVKWFNDEKGFGFITQDN---GGADVFVHFRAITGEGFKSLKEGQKVSFDVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PQAANVEAI 69
>gi|302381609|ref|YP_003817432.1| cold-shock DNA-binding domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192237|gb|ADK99808.1| cold-shock DNA-binding domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWYN KGYGFI P G DVF+H SAV AG+ L EGQ V+Y+ ++
Sbjct: 1 MATGTVKWYNSTKGYGFIEPSD---GGKDVFVHVSAVEGAGMNGLNEGQKVSYEVEKDRR 57
Query: 62 NGKYSAENLKLVP 74
GK SA LK
Sbjct: 58 TGKESAGQLKAAE 70
>gi|169828062|ref|YP_001698220.1| cold shock protein [Lysinibacillus sphaericus C3-41]
gi|168992550|gb|ACA40090.1| cold shock protein [Lysinibacillus sphaericus C3-41]
Length = 71
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V +
Sbjct: 6 MTQGTVKWFNSEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTIEDGQR 61
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 62 G--PQAANIVKL 71
>gi|148360957|ref|YP_001252164.1| cold shock protein CspD [Legionella pneumophila str. Corby]
gi|148282730|gb|ABQ56818.1| cold shock protein CspD [Legionella pneumophila str. Corby]
Length = 77
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD V +
Sbjct: 1 MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLAPGQAVTYDVVNGER 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ + +++
Sbjct: 58 G--LHASNVVALSENAE 72
>gi|147791391|emb|CAN59784.1| hypothetical protein VITISV_042163 [Vitis vinifera]
Length = 247
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G
Sbjct: 7 TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62
Query: 64 KYSAENLKLVPKSSN 78
+ A ++ P S+
Sbjct: 63 RTKAVDVTG-PDGSS 76
>gi|28275223|ref|NP_717259.2| cold shock domain-contain protein [Shewanella oneidensis MR-1]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q
Sbjct: 4 TTGVVKWFNEDKGFGFISPDN---GGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 61 --PQAANVVVL 69
>gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium leprae TN]
gi|118619394|ref|YP_907726.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
gi|183985108|ref|YP_001853399.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
gi|221229481|ref|YP_002502897.1| putative cold shock protein [Mycobacterium leprae Br4923]
gi|296166704|ref|ZP_06849129.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|3097243|emb|CAA18820.1| small cold-shock protein [Mycobacterium leprae]
gi|13092550|emb|CAC29706.1| putative cold shock protein [Mycobacterium leprae]
gi|118571504|gb|ABL06255.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
gi|183178434|gb|ACC43544.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
gi|219932588|emb|CAR70291.1| putative cold shock protein [Mycobacterium leprae Br4923]
gi|295897969|gb|EFG77550.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H + + +G L E Q V ++ +
Sbjct: 1 MPQGTVKWFNAEKGFGFIAPED---GSADVFVHYTEIQGSGFRTLEENQKVEFEIGHSPK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--PQATGVRSV 67
>gi|54309149|ref|YP_130169.1| putative cold shock-like protein [Photobacterium profundum SS9]
gi|90410345|ref|ZP_01218361.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|46913581|emb|CAG20367.1| putative Cold shock-like protein [Photobacterium profundum SS9]
gi|90328586|gb|EAS44870.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+ G +L EGQ V++D Q
Sbjct: 4 TTGIVKWFNDEKGFGFITQDN---GGADVFVHFRAITGDGFKSLAEGQKVSFDVEQGQKG 60
Query: 63 GKYSAENLKL 72
A N+++
Sbjct: 61 --PQAANVEI 68
>gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis]
Length = 101
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G KW+N KGYGFI P+ ++ D+F+H+S++ S+G L EG+ V +D
Sbjct: 23 YTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFDVTDGQKG 82
Query: 63 GKYSAENLK 71
A N+
Sbjct: 83 K--VATNVT 89
>gi|225431120|ref|XP_002266115.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 241
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G
Sbjct: 7 TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62
Query: 64 KYSAENLKLVPKSSN 78
+ A ++ P S+
Sbjct: 63 RTKAVDVTG-PDGSS 76
>gi|114705002|ref|ZP_01437910.1| cold shock protein [Fulvimarina pelagi HTCC2506]
gi|114539787|gb|EAU42907.1| cold shock protein [Fulvimarina pelagi HTCC2506]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N +KG+GFI P+ G D+F+H SAV ++GL L E Q V+++ +
Sbjct: 1 MAQTGTVKFFNTEKGFGFIKPDN---GGADIFVHISAVQASGLAGLEENQKVSFETEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL+
Sbjct: 58 RGKGPKAVNLEP 69
>gi|326692606|ref|ZP_08229611.1| cold-shock DNA-binding protein family protein [Leuconostoc
argentinum KCTC 3773]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT E GDDVF H SA+ S G L EGQ VT+D D
Sbjct: 1 METGTVKWFNGDKGFGFITREN----GDDVFAHFSAIQSNGFKTLDEGQSVTFDVESGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|222086573|ref|YP_002545107.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221724021|gb|ACM27177.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 71
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI P+ + G D+F+H SAV ++GL L+E Q V++D +
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---KGGADIFVHISAVQASGLAGLSENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKL 72
A NL++
Sbjct: 58 RGKGPKAVNLQI 69
>gi|329941300|ref|ZP_08290579.1| cold-shock protein [Streptomyces griseoaurantiacus M045]
gi|329299831|gb|EGG43730.1| cold-shock protein [Streptomyces griseoaurantiacus M045]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|325963821|ref|YP_004241727.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469908|gb|ADX73593.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ S DVF+H S + + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDS---DGDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 57
Query: 62 NGKYSAENLKLV 73
A + +V
Sbjct: 58 G--PQATGVTVV 67
>gi|257868635|ref|ZP_05648288.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2]
gi|257802799|gb|EEV31621.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQGDGFKTLDEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|229106451|ref|ZP_04236811.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28]
gi|228676997|gb|EEL31483.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKG+GFI + G+DVF+H SA+ G +L EGQ VT++ +
Sbjct: 1 MEQGKVKWFNADKGFGFIER----QGGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEKGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|254252966|ref|ZP_04946284.1| Cold-shock protein [Burkholderia dolosa AUO158]
gi|124895575|gb|EAY69455.1| Cold-shock protein [Burkholderia dolosa AUO158]
gi|325524697|gb|EGD02687.1| cold shock-like protein [Burkholderia sp. TJI49]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAI 67
>gi|114767284|ref|ZP_01446124.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
gi|114540590|gb|EAU43663.1| cold shock family protein [Roseovarius sp. HTCC2601]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+YD +
Sbjct: 1 MPSGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYDLKEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LK +
Sbjct: 57 DGRMMASDLKPL 68
>gi|311068850|ref|YP_003973773.1| cold shock protein [Bacillus atrophaeus 1942]
gi|310869367|gb|ADP32842.1| cold shock protein [Bacillus atrophaeus 1942]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EG+ V++D Q
Sbjct: 1 MEQGKVKWFNAEKGFGFIEREA----GDDVFVHFSAIQGEGFKSLEEGESVSFDVEQGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQASNVQK 65
>gi|227551594|ref|ZP_03981643.1| cold shock protein CspC [Enterococcus faecium TX1330]
gi|257884481|ref|ZP_05664134.1| cold shock protein CspC [Enterococcus faecium 1,231,501]
gi|257895800|ref|ZP_05675453.1| cold shock protein CspC [Enterococcus faecium Com12]
gi|257898422|ref|ZP_05678075.1| cold shock protein CspC [Enterococcus faecium Com15]
gi|293377586|ref|ZP_06623775.1| cold-shock DNA-binding domain protein [Enterococcus faecium
PC4.1]
gi|293571778|ref|ZP_06682794.1| cold-shock protein [Enterococcus faecium E980]
gi|227179271|gb|EEI60243.1| cold shock protein CspC [Enterococcus faecium TX1330]
gi|257820319|gb|EEV47467.1| cold shock protein CspC [Enterococcus faecium 1,231,501]
gi|257832365|gb|EEV58786.1| cold shock protein CspC [Enterococcus faecium Com12]
gi|257836334|gb|EEV61408.1| cold shock protein CspC [Enterococcus faecium Com15]
gi|291608032|gb|EFF37338.1| cold-shock protein [Enterococcus faecium E980]
gi|292643586|gb|EFF61707.1| cold-shock DNA-binding domain protein [Enterococcus faecium
PC4.1]
Length = 65
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N DKG+GFIT E G+DVF H SA+ G +L EGQ VTYD +
Sbjct: 1 MNKGTVKWFNSDKGFGFITGED----GNDVFAHFSAIQGEGFKSLDEGQAVTYDIEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAVNI 63
>gi|188996314|ref|YP_001930565.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931381|gb|ACD66011.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW++ KG+GFIT + +G D+F+H SA+ +G NL EGQ V ++ VQ++
Sbjct: 1 MAVTGTVKWFDSKKGFGFITRDD---NGQDIFVHFSAIQGSGFKNLEEGQKVRFEIVQDE 57
Query: 61 ANGKYSAENLKLV 73
+ A+ ++ +
Sbjct: 58 KGPR--ADKVEKL 68
>gi|170017900|ref|YP_001728819.1| cold shock protein [Leuconostoc citreum KM20]
gi|169804757|gb|ACA83375.1| Cold shock protein [Leuconostoc citreum KM20]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGF+T E G+DVF H SA+ G L EGQ V ++ +D
Sbjct: 1 MEKGTVKWFNGEKGYGFVTREN----GEDVFAHFSAIQGDGFKTLEEGQAVEFEVESSDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANIVKL 66
>gi|126724626|ref|ZP_01740469.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126705790|gb|EBA04880.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G+DVF+H SAV AGL L + Q VTY+ +
Sbjct: 1 MANGTVKWFNSTKGYGFIAPD---AGGNDVFVHISAVERAGLTGLKDNQKVTYEL-ETGR 56
Query: 62 NGKYSAENLKL 72
+GK SA +L L
Sbjct: 57 DGKQSAGDLAL 67
>gi|126174687|ref|YP_001050836.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS155]
gi|153000986|ref|YP_001366667.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS185]
gi|160875699|ref|YP_001555015.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS195]
gi|217973054|ref|YP_002357805.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS223]
gi|304409064|ref|ZP_07390685.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
gi|307303067|ref|ZP_07582822.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
gi|125997892|gb|ABN61967.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
gi|151365604|gb|ABS08604.1| putative cold-shock DNA-binding domain protein [Shewanella
baltica OS185]
gi|160861221|gb|ABX49755.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
gi|217498189|gb|ACK46382.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
gi|304352885|gb|EFM17282.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
gi|306913427|gb|EFN43849.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
gi|315267888|gb|ADT94741.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++
Sbjct: 1 MASGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|325003541|ref|ZP_08124653.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
sp. P1]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI + G DVF+H SA+ + G L E Q V + Q
Sbjct: 1 MPQGTVKWFNAEKGFGFIATDD---EGPDVFVHYSAIEANGFRTLEENQRVDFQSSQGKK 57
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 58 G--PQADTVRVI 67
>gi|301160186|emb|CBW19708.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|323179480|gb|EFZ65047.1| cold shock-like protein cspG [Escherichia coli 1180]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 2 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 57
Query: 64 KYSAENLK 71
+A N+
Sbjct: 58 -PAAGNVT 64
>gi|222149316|ref|YP_002550273.1| cold shock protein [Agrobacterium vitis S4]
gi|221736300|gb|ACM37263.1| cold shock protein [Agrobacterium vitis S4]
Length = 71
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N DKG+GFI P+ G D+F+H SAV ++GL L+E Q V++D +
Sbjct: 1 MAETGIVKFFNNDKGFGFIKPDN---GGADIFVHISAVQASGLNGLSENQKVSFDTEPDR 57
Query: 61 ANGKYSAENLKL 72
A NL++
Sbjct: 58 RGKGPKAVNLQI 69
>gi|169334115|ref|ZP_02861308.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis
DSM 17244]
gi|169258832|gb|EDS72798.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis
DSM 17244]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KGYGFI+ + E+G+DVF+H SA++ G +L EGQ VTYD +
Sbjct: 1 MNNGTVKWFNQEKGYGFISND---ETGEDVFVHYSAISGEGFKSLNEGQKVTYDVEADTK 57
Query: 62 NG-KYSAENL 70
N ++ A N+
Sbjct: 58 NKSRFRAVNV 67
>gi|157375023|ref|YP_001473623.1| cold-shock DNA-binding domain-containing protein [Shewanella
sediminis HAW-EB3]
gi|170727046|ref|YP_001761072.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|157317397|gb|ABV36495.1| cold-shock DNA-binding domain protein [Shewanella sediminis
HAW-EB3]
gi|169812393|gb|ACA86977.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+DVF H S + G L GQ V ++
Sbjct: 1 MANGTVKWFNNAKGFGFICPE---AGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57
Query: 62 NGKYSAE 68
SA
Sbjct: 58 GMHASAI 64
>gi|56807801|ref|ZP_00365651.1| COG1278: Cold shock proteins [Streptococcus pyogenes M49 591]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E G DVF H SA+ + G L EGQ V +
Sbjct: 3 MAQGTVKWFNAEKGFGFISTEN----GQDVFAHFSAIQANGSKTLEEGQKVALSVEEGQR 58
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 59 G--PQAVNITKL 68
>gi|307313742|ref|ZP_07593360.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|306899232|gb|EFN29869.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+Y+ Q+
Sbjct: 1 MPTGTVKFFNDDKGFGFITPEN---GGTDVFVHVSALQRGG--SLKEGDKVSYEVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67
>gi|269104191|ref|ZP_06156887.1| putative Cold shock-like protein [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268160831|gb|EEZ39328.1| putative Cold shock-like protein [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ VT+D Q
Sbjct: 4 ATGTVKWFNEEKGFGFITQDN---GGADVFVHFRAITGEGFKTLAEGQKVTFDIEQGQKG 60
Query: 63 GKYSAENLKL 72
A N++
Sbjct: 61 --PQAANVEK 68
>gi|148977558|ref|ZP_01814137.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3]
gi|145963209|gb|EDK28476.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3]
Length = 73
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEGEEG---DIFAHYSTIQMEGYRTLKAGQQVDYEVESGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ V S++
Sbjct: 58 G--SHASSVVPVEGSAS 72
>gi|126650394|ref|ZP_01722622.1| cold shock protein [Bacillus sp. B14905]
gi|126593044|gb|EAZ87026.1| cold shock protein [Bacillus sp. B14905]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V +
Sbjct: 1 MTQGTVKWFNSEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTIEDGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANIVKL 66
>gi|126698469|ref|YP_001087366.1| cold shock protein [Clostridium difficile 630]
gi|254974514|ref|ZP_05270986.1| cold shock protein [Clostridium difficile QCD-66c26]
gi|255091905|ref|ZP_05321383.1| cold shock protein [Clostridium difficile CIP 107932]
gi|255100004|ref|ZP_05328981.1| cold shock protein [Clostridium difficile QCD-63q42]
gi|255305891|ref|ZP_05350063.1| cold shock protein [Clostridium difficile ATCC 43255]
gi|255313639|ref|ZP_05355222.1| cold shock protein [Clostridium difficile QCD-76w55]
gi|255516323|ref|ZP_05383999.1| cold shock protein [Clostridium difficile QCD-97b34]
gi|255649422|ref|ZP_05396324.1| cold shock protein [Clostridium difficile QCD-37x79]
gi|255654944|ref|ZP_05400353.1| cold shock protein [Clostridium difficile QCD-23m63]
gi|260682590|ref|YP_003213875.1| cold shock protein [Clostridium difficile CD196]
gi|260686190|ref|YP_003217323.1| cold shock protein [Clostridium difficile R20291]
gi|296449689|ref|ZP_06891459.1| cold shock protein CspA [Clostridium difficile NAP08]
gi|296877994|ref|ZP_06902013.1| cold shock protein CspA [Clostridium difficile NAP07]
gi|306519503|ref|ZP_07405850.1| cold shock protein [Clostridium difficile QCD-32g58]
gi|115249906|emb|CAJ67725.1| Cold shock protein [Clostridium difficile]
gi|260208753|emb|CBA61608.1| cold shock protein [Clostridium difficile CD196]
gi|260212206|emb|CBE02896.1| cold shock protein [Clostridium difficile R20291]
gi|296261413|gb|EFH08238.1| cold shock protein CspA [Clostridium difficile NAP08]
gi|296431062|gb|EFH16890.1| cold shock protein CspA [Clostridium difficile NAP07]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ E DDVF+H SA+ + G L EG+ V++D Q +
Sbjct: 1 MKNGIVKWFNNEKGFGFISVE----GEDDVFVHFSAIQNDGYKTLEEGEKVSFDITQGNR 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--PQAENVNRI 66
>gi|90425745|ref|YP_534115.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisB18]
gi|90107759|gb|ABD89796.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB18]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI P G DVF+H SAV AGL L EGQ V ++ V N
Sbjct: 1 MAKGTVKWFNATKGFGFIQPSN---GGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|257880622|ref|ZP_05660275.1| cold shock protein CspC [Enterococcus faecium 1,230,933]
gi|257883616|ref|ZP_05663269.1| cold shock protein CspC [Enterococcus faecium 1,231,502]
gi|261209714|ref|ZP_05924033.1| cold shock protein CspC [Enterococcus faecium TC 6]
gi|289567769|ref|ZP_06448041.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
gi|293556143|ref|ZP_06674737.1| cold-shock protein [Enterococcus faecium E1039]
gi|293556264|ref|ZP_06674851.1| cold-shock protein [Enterococcus faecium E1039]
gi|293568900|ref|ZP_06680213.1| cold-shock protein [Enterococcus faecium E1071]
gi|293572638|ref|ZP_06683609.1| cold-shock protein [Enterococcus faecium E980]
gi|294615448|ref|ZP_06695318.1| cold-shock protein [Enterococcus faecium E1636]
gi|294615452|ref|ZP_06695321.1| cold-shock protein [Enterococcus faecium E1636]
gi|294623464|ref|ZP_06702315.1| cold shock protein [Enterococcus faecium U0317]
gi|257814850|gb|EEV43608.1| cold shock protein CspC [Enterococcus faecium 1,230,933]
gi|257819274|gb|EEV46602.1| cold shock protein CspC [Enterococcus faecium 1,231,502]
gi|260076316|gb|EEW64124.1| cold shock protein CspC [Enterococcus faecium TC 6]
gi|289160436|gb|EFD08464.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
gi|291588333|gb|EFF20168.1| cold-shock protein [Enterococcus faecium E1071]
gi|291591688|gb|EFF23328.1| cold-shock protein [Enterococcus faecium E1636]
gi|291591694|gb|EFF23333.1| cold-shock protein [Enterococcus faecium E1636]
gi|291597125|gb|EFF28325.1| cold shock protein [Enterococcus faecium U0317]
gi|291601573|gb|EFF31838.1| cold-shock protein [Enterococcus faecium E1039]
gi|291601684|gb|EFF31942.1| cold-shock protein [Enterococcus faecium E1039]
gi|291607335|gb|EFF36686.1| cold-shock protein [Enterococcus faecium E980]
Length = 65
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ G +L EGQ VTYD +
Sbjct: 1 MNNGTVKWFNSDKGFGFITGED----GNDVFAHFSAIQGEGFKSLDEGQAVTYDIEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAVNI 63
>gi|167837494|ref|ZP_02464377.1| cold-shock domain family protein [Burkholderia thailandensis
MSMB43]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIKMEGFKTLKENQRVSFEVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAL 67
>gi|152999996|ref|YP_001365677.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS185]
gi|160874617|ref|YP_001553933.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS195]
gi|217974041|ref|YP_002358792.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS223]
gi|304409581|ref|ZP_07391201.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
gi|307303939|ref|ZP_07583692.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
gi|151364614|gb|ABS07614.1| putative cold-shock DNA-binding domain protein [Shewanella
baltica OS185]
gi|160860139|gb|ABX48673.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
gi|217499176|gb|ACK47369.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
gi|304352099|gb|EFM16497.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
gi|306912837|gb|EFN43260.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
gi|315266858|gb|ADT93711.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V++D Q
Sbjct: 4 TTGVVKWFNEDKGFGFISPDN---GGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 61 --PQAANVVIL 69
>gi|29376512|ref|NP_815666.1| cold shock protein CspC [Enterococcus faecalis V583]
gi|255972368|ref|ZP_05422954.1| cold-shock protein [Enterococcus faecalis T1]
gi|256619465|ref|ZP_05476311.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
gi|256853505|ref|ZP_05558875.1| cold shock protein CspC [Enterococcus faecalis T8]
gi|256959303|ref|ZP_05563474.1| cold-shock protein [Enterococcus faecalis DS5]
gi|256964738|ref|ZP_05568909.1| cold-shock protein [Enterococcus faecalis HIP11704]
gi|257079369|ref|ZP_05573730.1| cold-shock protein [Enterococcus faecalis JH1]
gi|257087195|ref|ZP_05581556.1| cold-shock protein [Enterococcus faecalis D6]
gi|257090271|ref|ZP_05584632.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257422222|ref|ZP_05599212.1| cold shock protein [Enterococcus faecalis X98]
gi|300860380|ref|ZP_07106467.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
gi|29343976|gb|AAO81736.1| cold shock protein CspC [Enterococcus faecalis V583]
gi|255963386|gb|EET95862.1| cold-shock protein [Enterococcus faecalis T1]
gi|256598992|gb|EEU18168.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
gi|256711964|gb|EEU27002.1| cold shock protein CspC [Enterococcus faecalis T8]
gi|256949799|gb|EEU66431.1| cold-shock protein [Enterococcus faecalis DS5]
gi|256955234|gb|EEU71866.1| cold-shock protein [Enterococcus faecalis HIP11704]
gi|256987399|gb|EEU74701.1| cold-shock protein [Enterococcus faecalis JH1]
gi|256995225|gb|EEU82527.1| cold-shock protein [Enterococcus faecalis D6]
gi|256999083|gb|EEU85603.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257164046|gb|EEU94006.1| cold shock protein [Enterococcus faecalis X98]
gi|300849419|gb|EFK77169.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
gi|323481125|gb|ADX80564.1| cold shock protein cspC [Enterococcus faecalis 62]
gi|329568749|gb|EGG50549.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ + G +L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNSDKGFGFITGED----GNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--MQAVNI 63
>gi|21222143|ref|NP_627922.1| cold-shock protein [Streptomyces coelicolor A3(2)]
gi|256786771|ref|ZP_05525202.1| cold-shock protein [Streptomyces lividans TK24]
gi|289770662|ref|ZP_06530040.1| cold-shock protein [Streptomyces lividans TK24]
gi|7210998|emb|CAB76978.1| cold-shock protein [Streptomyces coelicolor A3(2)]
gi|289700861|gb|EFD68290.1| cold-shock protein [Streptomyces lividans TK24]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + + G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINAQGFRELLEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENLKL 72
+AEN+
Sbjct: 58 G--PTAENITP 66
>gi|119776095|ref|YP_928835.1| cold-shock DNA-binding domain-containing protein [Shewanella
amazonensis SB2B]
gi|119768595|gb|ABM01166.1| cold-shock DNA-binding protein family [Shewanella amazonensis
SB2B]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ GS+KW+N KG+GFITP+ G DVF+H A+A G L EGQ V ++ Q +
Sbjct: 3 IKTTGSVKWFNETKGFGFITPDN---GGADVFVHFRAIAVDGFKTLAEGQQVQFNVEQGN 59
Query: 61 ANGKYSAENLKLV 73
A N+ L+
Sbjct: 60 KG--PQAANVTLL 70
>gi|254508069|ref|ZP_05120196.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
16]
gi|323496408|ref|ZP_08101466.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326]
gi|219549036|gb|EED26034.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
16]
gi|323318685|gb|EGA71638.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFIT E G DVF+H A+ G L EGQ V ++ Q
Sbjct: 5 TTGTVKWFNEEKGFGFITQEN---GGADVFVHFRAITGEGFKTLAEGQKVAFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N++++
Sbjct: 62 --PQAANVEVL 70
>gi|39934248|ref|NP_946524.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris CGA009]
gi|39648096|emb|CAE26616.1| cold shock DNA binding protein [Rhodopseudomonas palustris
CGA009]
Length = 86
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +LTEGQ ++++ +
Sbjct: 16 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 72
Query: 61 ANGKYSAENLKLVP 74
A NL + P
Sbjct: 73 KGKGPKAVNLVISP 86
>gi|307943089|ref|ZP_07658434.1| putative cold shock protein [Roseibium sp. TrichSKD4]
gi|307773885|gb|EFO33101.1| putative cold shock protein [Roseibium sp. TrichSKD4]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KGYGFI PE DVF+H SAV AG+ L+EGQ V+++ VQ+
Sbjct: 1 MAIGTVKFFNTTKGYGFIQPED---GSQDVFVHISAVERAGMTTLSEGQKVSFEVVQDRR 57
Query: 62 NGKYSAENLKLV 73
+GK +A+ L V
Sbjct: 58 SGKSAADGLAAV 69
>gi|304407680|ref|ZP_07389331.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304343163|gb|EFM09006.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 65
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ + G L EGQ V +D V+
Sbjct: 2 QGKVKWFNAEKGYGFIETE----QGGDVFVHFSAIQADGFKTLEEGQAVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVTKL 65
>gi|225873243|ref|YP_002754702.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
gi|225794371|gb|ACO34461.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
Length = 72
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G +KW+N KGYGFI + G DVF+H SA+ G +L EG V +D VQ
Sbjct: 4 YKGKVKWFNNAKGYGFIGRDD----GPDVFVHYSAIQIDGYKSLKEGDEVEFDIVQGQKG 59
Query: 63 GKYSAENLKLVPK 75
A+ + + +
Sbjct: 60 --PQADQVTRMRE 70
>gi|157374396|ref|YP_001472996.1| putative cold shock-like protein [Shewanella sediminis HAW-EB3]
gi|157316770|gb|ABV35868.1| putative Cold shock-like protein [Shewanella sediminis HAW-EB3]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI+ E GDDVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGTVKWFNEEKGFGFISQEN---GGDDVFVHFRAIASDGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAI 70
>gi|145299398|ref|YP_001142239.1| cold shock domain-containing protein CspD [Aeromonas salmonicida
subsp. salmonicida A449]
gi|330829988|ref|YP_004392940.1| Cold shock-like protein cspD [Aeromonas veronii B565]
gi|142852170|gb|ABO90491.1| cold shock domain protein CspD [Aeromonas salmonicida subsp.
salmonicida A449]
gi|328805124|gb|AEB50323.1| Cold shock-like protein cspD [Aeromonas veronii B565]
Length = 72
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V ++ Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMEGYKTLKAGQAVNFELQQGPK 57
Query: 62 NGKYSAEN 69
S
Sbjct: 58 GNHASVIV 65
>gi|23502382|ref|NP_698509.1| cold-shock family protein [Brucella suis 1330]
gi|62290402|ref|YP_222195.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82700324|ref|YP_414898.1| cold shock DNA-binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|161619460|ref|YP_001593347.1| hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
gi|163843768|ref|YP_001628172.1| hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
gi|189024628|ref|YP_001935396.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|225852991|ref|YP_002733224.1| hypothetical protein BMEA_A1565 [Brucella melitensis ATCC 23457]
gi|254689700|ref|ZP_05152954.1| cold-shock family protein [Brucella abortus bv. 6 str. 870]
gi|254694190|ref|ZP_05156018.1| cold-shock family protein [Brucella abortus bv. 3 str. Tulya]
gi|254697843|ref|ZP_05159671.1| cold-shock family protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254702232|ref|ZP_05164060.1| cold-shock family protein [Brucella suis bv. 5 str. 513]
gi|254704767|ref|ZP_05166595.1| cold-shock family protein [Brucella suis bv. 3 str. 686]
gi|254708180|ref|ZP_05170008.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
gi|254710551|ref|ZP_05172362.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|254714734|ref|ZP_05176545.1| cold-shock family protein [Brucella ceti M644/93/1]
gi|254717794|ref|ZP_05179605.1| cold-shock family protein [Brucella ceti M13/05/1]
gi|254719549|ref|ZP_05181360.1| cold-shock family protein [Brucella sp. 83/13]
gi|254730734|ref|ZP_05189312.1| cold-shock family protein [Brucella abortus bv. 4 str. 292]
gi|256032045|ref|ZP_05445659.1| cold-shock family protein [Brucella pinnipedialis M292/94/1]
gi|256045136|ref|ZP_05448036.1| cold-shock family protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256061567|ref|ZP_05451709.1| cold-shock family protein [Brucella neotomae 5K33]
gi|256114072|ref|ZP_05454842.1| cold-shock family protein [Brucella melitensis bv. 3 str. Ether]
gi|256160241|ref|ZP_05457935.1| cold-shock family protein [Brucella ceti M490/95/1]
gi|256255447|ref|ZP_05460983.1| cold-shock family protein [Brucella ceti B1/94]
gi|256257951|ref|ZP_05463487.1| cold-shock family protein [Brucella abortus bv. 9 str. C68]
gi|256263527|ref|ZP_05466059.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
gi|256369930|ref|YP_003107441.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260169180|ref|ZP_05755991.1| cold-shock family protein [Brucella sp. F5/99]
gi|260546939|ref|ZP_05822678.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus NCTC 8038]
gi|260565265|ref|ZP_05835749.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260565989|ref|ZP_05836459.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 4 str. 40]
gi|260755234|ref|ZP_05867582.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|260758454|ref|ZP_05870802.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|260762280|ref|ZP_05874623.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|260884248|ref|ZP_05895862.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
gi|261214497|ref|ZP_05928778.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
gi|261219643|ref|ZP_05933924.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261222653|ref|ZP_05936934.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|261315687|ref|ZP_05954884.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261318125|ref|ZP_05957322.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261322531|ref|ZP_05961728.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261325575|ref|ZP_05964772.1| cold-shock DNA-binding domain-containing protein [Brucella
neotomae 5K33]
gi|261752805|ref|ZP_05996514.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 5 str. 513]
gi|261755464|ref|ZP_05999173.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 3 str. 686]
gi|261758694|ref|ZP_06002403.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|261885343|ref|ZP_06009382.1| cold-shock family protein [Campylobacter fetus subsp. venerealis
str. Azul-94]
gi|265984558|ref|ZP_06097293.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|265989155|ref|ZP_06101712.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|265991570|ref|ZP_06104127.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265995406|ref|ZP_06107963.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|265998617|ref|ZP_06111174.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|294852832|ref|ZP_06793505.1| major cold shock protein [Brucella sp. NVSL 07-0026]
gi|306838489|ref|ZP_07471330.1| cold shock protein [Brucella sp. NF 2653]
gi|306844515|ref|ZP_07477104.1| cold shock protein [Brucella sp. BO1]
gi|23348366|gb|AAN30424.1| cold-shock family protein [Brucella suis 1330]
gi|62196534|gb|AAX74834.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616425|emb|CAJ11488.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
2308]
gi|161336271|gb|ABX62576.1| Hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
gi|163674491|gb|ABY38602.1| Hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
gi|189020200|gb|ACD72922.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|225641356|gb|ACO01270.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|256000093|gb|ACU48492.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260095989|gb|EEW79866.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus NCTC 8038]
gi|260151333|gb|EEW86427.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260155507|gb|EEW90587.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 4 str. 40]
gi|260668772|gb|EEX55712.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|260672712|gb|EEX59533.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|260675342|gb|EEX62163.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|260873776|gb|EEX80845.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
gi|260916104|gb|EEX82965.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
gi|260921237|gb|EEX87890.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|260924732|gb|EEX91300.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261295221|gb|EEX98717.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261297348|gb|EEY00845.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261301555|gb|EEY05052.1| cold-shock DNA-binding domain-containing protein [Brucella
neotomae 5K33]
gi|261304713|gb|EEY08210.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261738678|gb|EEY26674.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|261742558|gb|EEY30484.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 5 str. 513]
gi|261745217|gb|EEY33143.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 3 str. 686]
gi|262553241|gb|EEZ09075.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|262766519|gb|EEZ12308.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263002354|gb|EEZ14929.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093556|gb|EEZ17581.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
gi|264661352|gb|EEZ31613.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|264663150|gb|EEZ33411.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|294821421|gb|EFG38420.1| major cold shock protein [Brucella sp. NVSL 07-0026]
gi|306275126|gb|EFM56882.1| cold shock protein [Brucella sp. BO1]
gi|306406453|gb|EFM62691.1| cold shock protein [Brucella sp. NF 2653]
Length = 71
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N +KG+GFI P+ G D+F+H SAV ++GL L + Q V+Y+ +
Sbjct: 1 MAQTGQVKFFNTEKGFGFIKPDD---GGADIFVHISAVQASGLPGLADNQKVSYETEPDR 57
Query: 61 ANGKYSAENLKL 72
A N+ +
Sbjct: 58 RGKGPKAVNITI 69
>gi|110678556|ref|YP_681563.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
gi|109454672|gb|ABG30877.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G D+F+H SAV AGL L + Q VT++ +
Sbjct: 1 MASGTVKWFNTTKGYGFIAPDS---GGKDIFVHISAVERAGLTGLADNQKVTFEI-ETSR 56
Query: 62 NGKYSAENLKL 72
+G+ SA +L +
Sbjct: 57 DGRESASDLAI 67
>gi|28897786|ref|NP_797391.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD
2210633]
gi|28805999|dbj|BAC59275.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD
2210633]
Length = 79
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 8 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEIEKGPK 64
Query: 62 NGKYSAENLKLVPK 75
A ++ +
Sbjct: 65 G--CHASSVVPIEA 76
>gi|326794630|ref|YP_004312450.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
gi|326545394|gb|ADZ90614.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
Length = 84
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+HRGS+KW+N KGYGFI + +D+F+H SA+ G L GQ VT+D
Sbjct: 1 MHRGSVKWFNNAKGYGFIVSDSF---DEDLFIHYSAINVEGYKTLKAGQSVTFDVSPGKR 57
Query: 62 NGKYSAENLKLVPKSS 77
A ++ V +++
Sbjct: 58 G--LHAVDITPVDQAT 71
>gi|188586205|ref|YP_001917750.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350892|gb|ACB85162.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKGYGFI E DDVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MTKGIVKWFNSDKGYGFIQVE----GEDDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQR 56
Query: 62 NGKYSAENLKL 72
G +AE +KL
Sbjct: 57 -GPQAAEVVKL 66
>gi|29375372|ref|NP_814526.1| cold shock domain-contain protein [Enterococcus faecalis V583]
gi|227517748|ref|ZP_03947797.1| cold-shock protein [Enterococcus faecalis TX0104]
gi|227554895|ref|ZP_03984942.1| cold-shock protein [Enterococcus faecalis HH22]
gi|229546635|ref|ZP_04435360.1| cold-shock protein [Enterococcus faecalis TX1322]
gi|229548721|ref|ZP_04437446.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
gi|255971235|ref|ZP_05421821.1| cold-shock protein [Enterococcus faecalis T1]
gi|255973859|ref|ZP_05424445.1| cold-shock protein [Enterococcus faecalis T2]
gi|256617665|ref|ZP_05474511.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
gi|256761545|ref|ZP_05502125.1| cold-shock protein [Enterococcus faecalis T3]
gi|256854357|ref|ZP_05559721.1| cold shock domain-contain protein [Enterococcus faecalis T8]
gi|256957355|ref|ZP_05561526.1| cold-shock protein [Enterococcus faecalis DS5]
gi|256959910|ref|ZP_05564081.1| cold-shock protein [Enterococcus faecalis Merz96]
gi|256964386|ref|ZP_05568557.1| cold-shock protein [Enterococcus faecalis HIP11704]
gi|257077649|ref|ZP_05572010.1| cold-shock protein [Enterococcus faecalis JH1]
gi|257081040|ref|ZP_05575401.1| cold shock domain-containing protein [Enterococcus faecalis
E1Sol]
gi|257083701|ref|ZP_05578062.1| cold shock domain-containing protein [Enterococcus faecalis Fly1]
gi|257086135|ref|ZP_05580496.1| cold-shock protein [Enterococcus faecalis D6]
gi|257089207|ref|ZP_05583568.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257415348|ref|ZP_05592342.1| cold-shock protein [Enterococcus faecalis AR01/DG]
gi|257418385|ref|ZP_05595379.1| cold-shock protein [Enterococcus faecalis T11]
gi|257421034|ref|ZP_05598024.1| cold shock protein [Enterococcus faecalis X98]
gi|293385225|ref|ZP_06631042.1| cold shock protein B [Enterococcus faecalis R712]
gi|293388340|ref|ZP_06632852.1| cold shock protein B [Enterococcus faecalis S613]
gi|294781498|ref|ZP_06746837.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
PC1.1]
gi|300859962|ref|ZP_07106050.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
gi|307270162|ref|ZP_07551479.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX4248]
gi|307271388|ref|ZP_07552663.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0855]
gi|307276241|ref|ZP_07557370.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX2134]
gi|307284456|ref|ZP_07564619.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0860]
gi|307289526|ref|ZP_07569472.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0109]
gi|307296199|ref|ZP_07576027.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0411]
gi|312901759|ref|ZP_07761028.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0470]
gi|312904195|ref|ZP_07763358.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0635]
gi|312907148|ref|ZP_07766140.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
DAPTO 512]
gi|312951852|ref|ZP_07770741.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0102]
gi|312979273|ref|ZP_07790972.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
DAPTO 516]
gi|29342832|gb|AAO80596.1| cold shock domain family protein [Enterococcus faecalis V583]
gi|227074804|gb|EEI12767.1| cold-shock protein [Enterococcus faecalis TX0104]
gi|227175977|gb|EEI56949.1| cold-shock protein [Enterococcus faecalis HH22]
gi|229306158|gb|EEN72154.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
gi|229308202|gb|EEN74189.1| cold-shock protein [Enterococcus faecalis TX1322]
gi|255962253|gb|EET94729.1| cold-shock protein [Enterococcus faecalis T1]
gi|255966731|gb|EET97353.1| cold-shock protein [Enterococcus faecalis T2]
gi|256597192|gb|EEU16368.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
gi|256682796|gb|EEU22491.1| cold-shock protein [Enterococcus faecalis T3]
gi|256709917|gb|EEU24961.1| cold shock domain-contain protein [Enterococcus faecalis T8]
gi|256947851|gb|EEU64483.1| cold-shock protein [Enterococcus faecalis DS5]
gi|256950406|gb|EEU67038.1| cold-shock protein [Enterococcus faecalis Merz96]
gi|256954882|gb|EEU71514.1| cold-shock protein [Enterococcus faecalis HIP11704]
gi|256985679|gb|EEU72981.1| cold-shock protein [Enterococcus faecalis JH1]
gi|256989070|gb|EEU76372.1| cold shock domain-containing protein [Enterococcus faecalis
E1Sol]
gi|256991731|gb|EEU79033.1| cold shock domain-containing protein [Enterococcus faecalis Fly1]
gi|256994165|gb|EEU81467.1| cold-shock protein [Enterococcus faecalis D6]
gi|256998019|gb|EEU84539.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257157176|gb|EEU87136.1| cold-shock protein [Enterococcus faecalis ARO1/DG]
gi|257160213|gb|EEU90173.1| cold-shock protein [Enterococcus faecalis T11]
gi|257162858|gb|EEU92818.1| cold shock protein [Enterococcus faecalis X98]
gi|291077522|gb|EFE14886.1| cold shock protein B [Enterococcus faecalis R712]
gi|291082282|gb|EFE19245.1| cold shock protein B [Enterococcus faecalis S613]
gi|294451428|gb|EFG19891.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
PC1.1]
gi|300850780|gb|EFK78529.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
gi|306496073|gb|EFM65655.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0411]
gi|306499544|gb|EFM68915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0109]
gi|306503264|gb|EFM72517.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0860]
gi|306507097|gb|EFM76238.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX2134]
gi|306511920|gb|EFM80915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0855]
gi|306513531|gb|EFM82146.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX4248]
gi|310626859|gb|EFQ10142.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
DAPTO 512]
gi|310630150|gb|EFQ13433.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0102]
gi|310632460|gb|EFQ15743.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0635]
gi|311287931|gb|EFQ66487.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
DAPTO 516]
gi|311291228|gb|EFQ69784.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0470]
gi|315027570|gb|EFT39502.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX2137]
gi|315029859|gb|EFT41791.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX4000]
gi|315031281|gb|EFT43213.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0017]
gi|315035333|gb|EFT47265.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0027]
gi|315145280|gb|EFT89296.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX2141]
gi|315148239|gb|EFT92255.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX4244]
gi|315151651|gb|EFT95667.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0012]
gi|315153201|gb|EFT97217.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0031]
gi|315154850|gb|EFT98866.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0043]
gi|315159935|gb|EFU03952.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0312]
gi|315161978|gb|EFU05995.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0645]
gi|315164631|gb|EFU08648.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX1302]
gi|315167012|gb|EFU11029.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX1341]
gi|315170889|gb|EFU14906.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX1342]
gi|315174689|gb|EFU18706.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX1346]
gi|315573437|gb|EFU85628.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0309B]
gi|315578025|gb|EFU90216.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0630]
gi|315581320|gb|EFU93511.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
TX0309A]
gi|323479972|gb|ADX79411.1| cold shock protein CspC [Enterococcus faecalis 62]
gi|327534366|gb|AEA93200.1| cold shock protein B [Enterococcus faecalis OG1RF]
gi|329577634|gb|EGG59065.1| cold shock protein CspA [Enterococcus faecalis TX1467]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ S G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQSDGFKTLDEGQAVTFDTEEGPR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|70727397|ref|YP_254313.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435]
gi|68448123|dbj|BAE05707.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H S +A G L EGQ V +D +
Sbjct: 1 MNNGTVKWFNAEKGFGFIERED----GSDVFVHFSGIAGEGYKTLEEGQKVDFDITEGQR 56
Query: 62 NGKYSAENLKLVP 74
A N+ ++
Sbjct: 57 G--EQATNVVVLS 67
>gi|288556195|ref|YP_003428130.1| major cold shock protein [Bacillus pseudofirmus OF4]
gi|288547355|gb|ADC51238.1| major cold shock protein [Bacillus pseudofirmus OF4]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT++ V+ +
Sbjct: 1 MLEGTVKWFNAEKGFGFIERE----GGDDVFVHFSAIQIDGFKTLEEGQAVTFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--EQAANVQK 65
>gi|260463314|ref|ZP_05811515.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259030904|gb|EEW32179.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 69
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ ++ EGQ V Y+ V+++
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDD---GSADVFVHISAVERAGMRDIVEGQKVGYEMVRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA+ LK
Sbjct: 58 SGKMSADQLK 67
>gi|257057657|ref|YP_003135489.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|256587529|gb|ACU98662.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G DVF+H S + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDGGEG---DVFVHYSEIEGRGFRTLEENQRVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQRVRAL 67
>gi|254390979|ref|ZP_05006188.1| cold-shock DNA-binding domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
gi|326445565|ref|ZP_08220299.1| cold-shock DNA-binding domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
gi|197704675|gb|EDY50487.1| cold-shock DNA-binding domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ
Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 60 G--MQADRVQVL 69
>gi|170722579|ref|YP_001750267.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida W619]
gi|169760582|gb|ACA73898.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
Length = 83
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G T DD+F H SA+ G L GQ VT++ VQ
Sbjct: 1 MASGKVKWFNNAKGYGFINEDGKT---DDLFAHYSAIKMDGYKTLKAGQAVTFEIVQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|71065502|ref|YP_264229.1| cold-shock DNA-binding protein family protein [Psychrobacter
arcticus 273-4]
gi|71038487|gb|AAZ18795.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
273-4]
Length = 71
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI + SG+D+F+H A+ G +L +G+ V + V+ D
Sbjct: 4 REQGIVKWFNDSKGFGFIQRD----SGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59
Query: 62 NGKYSAENLKLVPK 75
AE ++ V +
Sbjct: 60 G--LQAEEVRRVEE 71
>gi|21957922|gb|AAM84743.1|AE013720_7 cold shock protein [Yersinia pestis KIM 10]
gi|45435809|gb|AAS61366.1| putative cold shock protein [Yersinia pestis biovar Microtus str.
91001]
Length = 84
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++
Sbjct: 20 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIASNGFKTLAEGQRVEFEITNGAKG- 75
Query: 64 KYSAENL 70
SA N+
Sbjct: 76 -PSAANV 81
>gi|310641348|ref|YP_003946106.1| cold shock-like protein cspb [Paenibacillus polymyxa SC2]
gi|309246298|gb|ADO55865.1| Cold shock-like protein cspB [Paenibacillus polymyxa SC2]
Length = 65
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V ++ + + G
Sbjct: 2 KGTVKWFNAEKGYGFIQVE----GGEDVFVHFSAIQGDGFKTLEEGQEVEFEITEGNR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|261251826|ref|ZP_05944400.1| cold shock protein CspA [Vibrio orientalis CIP 102891]
gi|260938699|gb|EEX94687.1| cold shock protein CspA [Vibrio orientalis CIP 102891]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFITPE G DVF+H A+ S G L EGQ V+++ Q
Sbjct: 5 TTGIVKWFNEEKGFGFITPEN---GGADVFVHFRAITSDGFKTLKEGQQVSFEVEQGQKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --PQAANV 67
>gi|253681971|ref|ZP_04862768.1| conserved domain protein [Clostridium botulinum D str. 1873]
gi|253561683|gb|EES91135.1| conserved domain protein [Clostridium botulinum D str. 1873]
Length = 65
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+DVF H S + G L EGQ V++D V+
Sbjct: 2 TGTVKWFNAEKGFGFITTE----EGNDVFAHFSQINREGFKTLDEGQNVSFDVVEGAKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITIL 65
>gi|210622637|ref|ZP_03293297.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM
13275]
gi|210154138|gb|EEA85144.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM
13275]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ E DDVF+H SA+ + G +L EGQ V ++ V + A
Sbjct: 1 MKTGVVKWFNNEKGFGFISVE----GEDDVFVHFSAIQTEGYKSLEEGQKVEFEVV-DGA 55
Query: 62 NGKYSAENLKL 72
G +A +KL
Sbjct: 56 KGPQAANVVKL 66
>gi|126729016|ref|ZP_01744831.1| cold shock family protein [Sagittula stellata E-37]
gi|126710946|gb|EBA09997.1| cold shock family protein [Sagittula stellata E-37]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+Y+ +
Sbjct: 1 MPNGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYELREG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LK++
Sbjct: 57 DGRTMASDLKVI 68
>gi|116748179|ref|YP_844866.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697243|gb|ABK16431.1| cold-shock DNA-binding protein family [Syntrophobacter
fumaroxidans MPOB]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI T+ DVF+H SA+ + G +L+EG+ V+++ +
Sbjct: 1 MPEGRVKWFNDKKGYGFIE----TKDQGDVFVHHSAILAEGFRSLSEGEKVSFEVERGPK 56
Query: 62 NGKYSAENLKLVP 74
A +K +P
Sbjct: 57 G--PQAVRVKKIP 67
>gi|330958172|gb|EGH58432.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 101
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 2 VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
+ G +KW+N KGYGFI PE GDD+F+H S + G + GQ V +
Sbjct: 1 MKEGKVKWFNNAKGYGFINAKVNGKNPEKDEYGGDDLFVHFSTIEMEGYKTIKAGQKVIF 60
Query: 55 DYVQNDANGKYSAENLKLVPK 75
D ++ A N++ V
Sbjct: 61 DIIEGPKG--QHAVNIRAVKD 79
>gi|222082370|ref|YP_002541735.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221727049|gb|ACM30138.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H SA+ G +L EG+ V+Y+ Q+
Sbjct: 1 MPTGTVKFFNEDKGFGFITPEN---GGTDVFVHVSALQRGG--SLREGEKVSYELGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67
>gi|150020181|ref|YP_001305535.1| cold-shock DNA-binding domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149792702|gb|ABR30150.1| putative cold-shock DNA-binding domain protein [Thermosipho
melanesiensis BI429]
Length = 65
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT E G+D+F+H SA+ + G L EGQ V ++
Sbjct: 2 KGTVKWFDAKKGYGFITKED----GEDIFVHWSAIQTEGFKTLKEGQEVEFEVQDGQKG- 56
Query: 64 KYSAENLKLV 73
A N+K +
Sbjct: 57 -PQAANVKPL 65
>gi|92118346|ref|YP_578075.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91801240|gb|ABE63615.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 73
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N
Sbjct: 8 ATGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN--R 62
Query: 63 GKYSAENLKL 72
GK SAENL++
Sbjct: 63 GKESAENLRV 72
>gi|58582344|ref|YP_201360.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58426938|gb|AAW75975.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 121
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 58 NGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG- 112
Query: 64 KYSAENLKLV 73
A+ ++ V
Sbjct: 113 -MQADQVQAV 121
>gi|84514336|ref|ZP_01001700.1| cold shock protein CspA [Loktanella vestfoldensis SKA53]
gi|84511387|gb|EAQ07840.1| cold shock protein CspA [Loktanella vestfoldensis SKA53]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF+H SAV +GL L + Q VT+D ++
Sbjct: 1 MANGTVKWFNATKGFGFIAPEG---GSKDVFVHISAVERSGLTGLKDDQKVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAINLAL 67
>gi|148265731|ref|YP_001232437.1| cold-shock DNA-binding domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399231|gb|ABQ27864.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
Rf4]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI + G+DVF+H SA+ G +LTEG+ V++D
Sbjct: 1 MAQGKVKWFNDAKGFGFIEQDN----GEDVFVHFSAITGEGFKSLTEGEAVSFDVTNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--LQAANVKKI 66
>gi|170725719|ref|YP_001759745.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|169811066|gb|ACA85650.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
Length = 70
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI+ E G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGTVKWFNEEKGFGFISQEN---GGADVFVHFRAIASDGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|329850898|ref|ZP_08265743.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
gi|328841213|gb|EGF90784.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H +AV AGL L +GQ +TY+
Sbjct: 1 MATGTVKWFNSTKGFGFIQPD---AGGSDVFVHITAVERAGLRGLNDGQKITYELATE-- 55
Query: 62 NGKYSAENLK 71
GK SA NL+
Sbjct: 56 KGKTSAVNLQ 65
>gi|319778247|ref|YP_004129160.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis
MCE9]
gi|317108271|gb|ADU91017.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis
MCE9]
Length = 76
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GF+TPEGS +D+F+H S++ G L E Q ++++ +
Sbjct: 12 TGTVKWFNDTKGFGFVTPEGS---NEDLFIHFSSIQMEGFKTLKENQKISFEITEGPKGK 68
Query: 64 KYSAENLKL 72
A N++
Sbjct: 69 --QAINIQP 75
>gi|299132091|ref|ZP_07025286.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|298592228|gb|EFI52428.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P G G DVF+H SAV AGL +L EGQ + ++ V N
Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLTSLNEGQTIEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|290473959|ref|YP_003466833.1| DNA replication inhibitor, nucleic acid-binding domain
[Xenorhabdus bovienii SS-2004]
gi|289173266|emb|CBJ80041.1| DNA replication inhibitor, nucleic acid-binding domain
[Xenorhabdus bovienii SS-2004]
Length = 76
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P GDD+F H S + G L GQ V + Q
Sbjct: 1 METGTVKWFNNAKGFGFICPAS---GGDDIFAHYSTIQMDGYRTLKAGQKVNFSIHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|241554075|ref|YP_002979288.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240863381|gb|ACS61043.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+++ Q+
Sbjct: 1 MATGTVKFFNDDKGFGFITPEN---GGQDVFVHVSALQRGG--SLREGDKVSFEVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67
>gi|91209672|ref|YP_539658.1| cold shock protein CspE [Escherichia coli UTI89]
gi|237707404|ref|ZP_04537885.1| cold shock protein E [Escherichia sp. 3_2_53FAA]
gi|332281760|ref|ZP_08394173.1| cold shock protein E [Shigella sp. D9]
gi|26107003|gb|AAN79187.1|AE016757_91 Cold shock-like protein cspE [Escherichia coli CFT073]
gi|91071246|gb|ABE06127.1| cold shock-like protein CspE [Escherichia coli UTI89]
gi|226898614|gb|EEH84873.1| cold shock protein E [Escherichia sp. 3_2_53FAA]
gi|332104112|gb|EGJ07458.1| cold shock protein E [Shigella sp. D9]
Length = 97
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 33 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 88
Query: 64 KYSAENL 70
SA N+
Sbjct: 89 -PSAANV 94
>gi|308270250|emb|CBX26862.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G DVF+H SA+ + G +L+EG VT++ Q
Sbjct: 1 MINGTVKWFNDQKGFGFIEQEN----GPDVFVHHSAINATGFKSLSEGSHVTFEIEQGPK 56
Query: 62 NGKYSAENLKL 72
+A N+ L
Sbjct: 57 G--PAASNVTL 65
>gi|294500562|ref|YP_003564262.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295705915|ref|YP_003598990.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294350499|gb|ADE70828.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294803574|gb|ADF40640.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q
Sbjct: 1 MTEGTVKWFNAEKGFGFIEIE----GGEDVFVHFSAIQGDGFKSLDEGQKVTFDIEQGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--AQAANV 63
>gi|167037174|ref|YP_001664752.1| cold-shock DNA-binding domain-containing protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167040687|ref|YP_001663672.1| cold-shock DNA-binding domain-containing protein
[Thermoanaerobacter sp. X514]
gi|300914728|ref|ZP_07132044.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
X561]
gi|307724038|ref|YP_003903789.1| cold-shock DNA-binding domain-containing protein
[Thermoanaerobacter sp. X513]
gi|320115592|ref|YP_004185751.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854927|gb|ABY93336.1| putative cold-shock DNA-binding domain protein
[Thermoanaerobacter sp. X514]
gi|166856008|gb|ABY94416.1| putative cold-shock DNA-binding domain protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300889663|gb|EFK84809.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
X561]
gi|307581099|gb|ADN54498.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
X513]
gi|319928683|gb|ADV79368.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 67
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MVRGKVKWFNAEKGYGFIERED----GTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATK 56
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 57 G--PQASKVRKV 66
>gi|56696164|ref|YP_166520.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
gi|56677901|gb|AAV94567.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
Length = 68
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q V+++ + +
Sbjct: 1 MPTGTVKWFNATKGYGFIAPDD---GGKDVFVHISAVERSGLTGLADNQKVSFEML-DGR 56
Query: 62 NGKYSAENLKLV 73
+G+ A ++K +
Sbjct: 57 DGRKMAGDIKPL 68
>gi|134297915|ref|YP_001111411.1| cold-shock DNA-binding domain-containing protein
[Desulfotomaculum reducens MI-1]
gi|134050615|gb|ABO48586.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
MI-1]
Length = 66
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI E G DVF+H SA+ G L EGQ V+++ VQ +
Sbjct: 1 MQKGTVKWFNAEKGYGFIETE----EGSDVFVHFSAITGDGFKTLEEGQRVSFNVVQGNR 56
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 57 G--PQAEEVVKL 66
>gi|308274453|emb|CBX31052.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.]
Length = 66
Score = 87.4 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G+DVF+H SA+ S G +L+EG VT+D V
Sbjct: 1 MANGTVKWFNDRKGFGFIEQEN----GNDVFVHHSAINSNGFKSLSEGDRVTFDVVNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 GPG--AANVTKL 66
>gi|218681656|ref|ZP_03529457.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
Length = 69
Score = 87.4 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N KG+GFI P+ DVF+H SAV AG+ L EGQ + YD V++
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDD---GSTDVFVHISAVERAGMRELVEGQKIRYDLVRDKR 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKNSADNLQ 67
>gi|172058938|ref|YP_001815398.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|171991459|gb|ACB62381.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
255-15]
Length = 66
Score = 87.4 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ +
Sbjct: 1 MNTGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGEGFKSLDEGQEVEFEITEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--AQAANVVKL 66
>gi|330815856|ref|YP_004359561.1| cold-shock DNA-binding protein family protein [Burkholderia
gladioli BSR3]
gi|327368249|gb|AEA59605.1| cold-shock DNA-binding protein family protein [Burkholderia
gladioli BSR3]
Length = 67
Score = 87.4 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIKMDGFKTLKENQRVSFDVKTGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QAANIQAV 67
>gi|326489997|dbj|BAJ94072.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 85
Score = 87.4 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ DVF+H SA++ AG L EGQ V +
Sbjct: 6 ATGVVKWFNESKGFGFITPDD---GSKDVFVHFSAISGAGFKTLAEGQRVEFYIQDGQKG 62
Query: 63 GKYSAENLKLVP 74
SA ++ +
Sbjct: 63 --PSAVDVMALE 72
>gi|312883132|ref|ZP_07742863.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369292|gb|EFP96813.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSAITGDGFRTLVEGQKVEFVVSQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+K+V
Sbjct: 61 -PQAENIKVV 69
>gi|296134718|ref|YP_003641960.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
gi|294338681|emb|CAZ87012.1| Cold shock protein [Thiomonas sp. 3As]
gi|295794840|gb|ADG29630.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G D+F+H S + G L E Q V ++ Q
Sbjct: 3 MQTGAVKWFNESKGFGFIAQDG---GDADLFVHFSEIQGNGFKTLAENQRVQFEVKQGPK 59
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 60 G--LQASNVTPL 69
>gi|253698845|ref|YP_003020034.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
gi|251773695|gb|ACT16276.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 66
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF+H SA+ G +L EG VT+D Q
Sbjct: 1 MAKGVVKWFNDSKGFGFIEQEN----GEDVFVHFSAIQGEGFKSLAEGDSVTFDVQQGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|113970957|ref|YP_734750.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-4]
gi|114048181|ref|YP_738731.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-7]
gi|113885641|gb|ABI39693.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
gi|113889623|gb|ABI43674.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q
Sbjct: 4 TTGIVKWFNEDKGFGFISPDN---GGADAFVHFRAIVSEGFKTLAEGQKVSYEVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 61 --PQAANVVVL 69
>gi|237730609|ref|ZP_04561090.1| cold shock protein CspE [Citrobacter sp. 30_2]
gi|226906148|gb|EEH92066.1| cold shock protein CspE [Citrobacter sp. 30_2]
Length = 100
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 36 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 91
Query: 64 KYSAENL 70
SA N+
Sbjct: 92 -PSAANV 97
>gi|212712933|ref|ZP_03321061.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens
DSM 30120]
gi|212684411|gb|EEB43939.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens
DSM 30120]
Length = 81
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA++ G L EGQ V ++ +
Sbjct: 17 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAISGDGFKTLAEGQKVEFEITEGAKG- 72
Query: 64 KYSAENL 70
SA N+
Sbjct: 73 -PSAANV 78
>gi|49487482|ref|YP_044703.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
gi|253730390|ref|ZP_04864555.1| cold-shock protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257793529|ref|ZP_05642508.1| cold shock protein CspB [Staphylococcus aureus A9781]
gi|258411165|ref|ZP_05681444.1| cold shock protein cspB [Staphylococcus aureus A9763]
gi|258420930|ref|ZP_05683864.1| cold shock protein [Staphylococcus aureus A9719]
gi|258438570|ref|ZP_05689793.1| cold shock protein [Staphylococcus aureus A9299]
gi|258443974|ref|ZP_05692312.1| cold shock protein [Staphylococcus aureus A8115]
gi|258446209|ref|ZP_05694369.1| cold shock protein [Staphylococcus aureus A6300]
gi|258449132|ref|ZP_05697238.1| cold shock protein [Staphylococcus aureus A6224]
gi|258454390|ref|ZP_05702358.1| cold shock protein cspB [Staphylococcus aureus A5937]
gi|282894269|ref|ZP_06302499.1| cold shock protein cspLA [Staphylococcus aureus A8117]
gi|282927740|ref|ZP_06335354.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A10102]
gi|295406853|ref|ZP_06816657.1| cold shock protein [Staphylococcus aureus A8819]
gi|297245888|ref|ZP_06929750.1| cold shock protein [Staphylococcus aureus A8796]
gi|49245925|emb|CAG44406.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
gi|253725870|gb|EES94599.1| cold-shock protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257787501|gb|EEV25841.1| cold shock protein CspB [Staphylococcus aureus A9781]
gi|257840050|gb|EEV64515.1| cold shock protein cspB [Staphylococcus aureus A9763]
gi|257843120|gb|EEV67535.1| cold shock protein [Staphylococcus aureus A9719]
gi|257848129|gb|EEV72121.1| cold shock protein [Staphylococcus aureus A9299]
gi|257850858|gb|EEV74802.1| cold shock protein [Staphylococcus aureus A8115]
gi|257855035|gb|EEV77978.1| cold shock protein [Staphylococcus aureus A6300]
gi|257857565|gb|EEV80460.1| cold shock protein [Staphylococcus aureus A6224]
gi|257863484|gb|EEV86244.1| cold shock protein cspB [Staphylococcus aureus A5937]
gi|282590500|gb|EFB95578.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
aureus A10102]
gi|282763314|gb|EFC03444.1| cold shock protein cspLA [Staphylococcus aureus A8117]
gi|294968318|gb|EFG44343.1| cold shock protein [Staphylococcus aureus A8819]
gi|297177253|gb|EFH36506.1| cold shock protein [Staphylococcus aureus A8796]
Length = 75
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H S +AS G L EGQ VT++ +
Sbjct: 10 MNNGTVKWFNAEKGFGFIEQEN----GGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 65
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 66 GD--QAVNVQTV 75
>gi|323359207|ref|YP_004225603.1| cold shock proteins [Microbacterium testaceum StLB037]
gi|323275578|dbj|BAJ75723.1| cold shock proteins [Microbacterium testaceum StLB037]
Length = 67
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFIT G DVF+H S + +G L EGQ V +
Sbjct: 1 MTQGTVKWFNAEKGYGFITVTD----GQDVFVHYSNIEMSGFRVLEEGQAVEFTVGSGQK 56
Query: 62 NGKYSAENLKL 72
AE+++L
Sbjct: 57 G--PQAESVRL 65
>gi|114571412|ref|YP_758092.1| cold-shock DNA-binding protein family protein [Maricaulis maris
MCS10]
gi|114341874|gb|ABI67154.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
Length = 70
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFITP+ E GDDVF+H SAV ++GL L++GQ V+++ +
Sbjct: 1 MSTGVVKFFNQSKGFGFITPD---EGGDDVFVHISAVQASGLPGLSDGQKVSFETEPDRR 57
Query: 62 NGKYSAENLKL 72
A +L+L
Sbjct: 58 GKGPKAVDLQL 68
>gi|70729479|ref|YP_259217.1| cold shock protein capa, fragment-like protein [Pseudomonas
fluorescens Pf-5]
gi|312961945|ref|ZP_07776442.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
gi|68343778|gb|AAY91384.1| cold shock protein capa [Pseudomonas fluorescens Pf-5]
gi|311283755|gb|EFQ62339.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
Length = 91
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 25 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 81
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 82 G--MQAAQVRP 90
>gi|148255251|ref|YP_001239836.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|146407424|gb|ABQ35930.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++GS+KW+NP KGYGFI P G DVF+H SAV AGL L E Q + YD V++
Sbjct: 4 YKGSVKWFNPTKGYGFIKPAG---GDKDVFVHISAVERAGLTTLNENQAIEYDLVES--R 58
Query: 63 GKYSAENLKL 72
GK SAENLKL
Sbjct: 59 GKTSAENLKL 68
>gi|99081593|ref|YP_613747.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
TM1040]
gi|99037873|gb|ABF64485.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
Length = 68
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVFLH SAV AG+ + +GQ VT+D +N
Sbjct: 1 MANGTVKWFNATKGFGFIQPED---GTQDVFLHISAVERAGINRIDDGQKVTFDL-ENGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRTSASNLAL 67
>gi|300722511|ref|YP_003711801.1| DNA replication inhibitor [Xenorhabdus nematophila ATCC 19061]
gi|297629018|emb|CBJ89603.1| DNA replication inhibitor, nucleic acid-binding domain
[Xenorhabdus nematophila ATCC 19061]
Length = 76
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P + GDD+F H S + G L GQ V + Q
Sbjct: 1 METGTVKWFNNAKGFGFICP---SSGGDDIFAHYSTIQMDGYRTLKAGQKVNFSVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + S
Sbjct: 58 GN--HASLIVPLEDGS 71
>gi|186474053|ref|YP_001861395.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184196385|gb|ACC74349.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 67
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ GDD+F H S V G +L E Q V +D Q
Sbjct: 1 MAEGTVKWFNDAKGFGFITPDD---GGDDLFAHFSEVRVNGFKSLQENQRVKFDVKQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIEPI 67
>gi|311694048|gb|ADP96921.1| cold-shock DNA-binding domain protein [marine bacterium HP15]
Length = 199
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + SGD+VF+H A+ G L +GQLV ++ V+ D
Sbjct: 133 EEGTVKWFNVKKGFGFIVRD----SGDEVFVHFRAIRGRGRRVLRQGQLVRFNVVEADKG 188
Query: 63 GKYSAENLKLVPK 75
A+N+ ++
Sbjct: 189 --LQADNVSILSD 199
>gi|266621457|ref|ZP_06114392.1| cold shock protein B [Clostridium hathewayi DSM 13479]
gi|288866898|gb|EFC99196.1| cold shock protein B [Clostridium hathewayi DSM 13479]
Length = 67
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KGYGFIT + E+G++VF+H S + + G L EGQ VTYD + +
Sbjct: 1 MNNGTVKWFNGAKGYGFITND---ETGEEVFVHFSGIMADGYKTLEEGQKVTYDTTEGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQAVNV 64
>gi|192360440|ref|YP_001982658.1| cold shock protein-like protein [Cellvibrio japonicus Ueda107]
gi|190686605|gb|ACE84283.1| cold shock protein-related protein [Cellvibrio japonicus Ueda107]
Length = 78
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF+H SA++ +G L EGQ V +D
Sbjct: 15 TGTVKWFNESKGFGFIAAE----SGQDVFVHYSAISGSGFKTLAEGQRVEFDVKPGQKG- 69
Query: 64 KYSAENLK 71
AEN+
Sbjct: 70 -PQAENVT 76
>gi|90414568|ref|ZP_01222542.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
gi|90414570|ref|ZP_01222544.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
gi|90324375|gb|EAS40941.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
gi|90324377|gb|EAS40943.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --PQAANVVAL 69
>gi|228911418|ref|ZP_04075217.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL
200]
gi|228848225|gb|EEM93080.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL
200]
Length = 66
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT++ +
Sbjct: 1 MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGFKSLDEGQSVTFEVEKGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--LQATNVQK 65
>gi|288574158|ref|ZP_06392515.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288569899|gb|EFC91456.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 66
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT E G D F+H SA+ G L EGQ VT+
Sbjct: 1 MTQGTVKWFNGTKGYGFITGED----GKDYFVHFSAINIDGFKTLDEGQAVTFTIENGQK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--PQASNVSPV 66
>gi|192289774|ref|YP_001990379.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
gi|192283523|gb|ACE99903.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 71
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +LTEGQ ++++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKLVP 74
A NL + P
Sbjct: 58 KGKGPKAVNLVISP 71
>gi|83647927|ref|YP_436362.1| cold shock protein [Hahella chejuensis KCTC 2396]
gi|83635970|gb|ABC31937.1| Cold shock protein [Hahella chejuensis KCTC 2396]
Length = 158
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+NP+KG+GFIT E GDD+F+H ++ G +L +GQ V + V+ D
Sbjct: 92 RESGIVKWFNPNKGFGFITRE----GGDDIFVHFRSIRGRGHRSLRQGQKVRFRTVEGDK 147
Query: 62 NGKYSAENLKLV 73
AE++ V
Sbjct: 148 G--LQAEDVSPV 157
>gi|330719414|ref|ZP_08314014.1| cold shock protein [Leuconostoc fallax KCTC 3537]
Length = 67
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N +KGYGFIT E G+DVF H SA+ G L EGQ V+++ +D
Sbjct: 1 MSEQGTVKWFNGEKGYGFITREN----GEDVFAHFSAIQGDGFKTLEEGQSVSFEVESSD 56
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 57 RG--LQATNI 64
>gi|301062851|ref|ZP_07203444.1| cold shock protein CspD [delta proteobacterium NaphS2]
gi|300443051|gb|EFK07223.1| cold shock protein CspD [delta proteobacterium NaphS2]
Length = 66
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG+GFI E G DVF+H SA+ G +L EG V++D +
Sbjct: 1 MANGTVKWFSDQKGFGFIEQED----GPDVFVHHSAILMEGFKSLNEGDQVSFDIEEGQK 56
Query: 62 NGKYSAENLKL 72
+A N+K+
Sbjct: 57 G--PAAANVKV 65
>gi|120556517|ref|YP_960868.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120326366|gb|ABM20681.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
VT8]
gi|311696264|gb|ADP99137.1| cold shock, CspA [marine bacterium HP15]
Length = 68
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V + Q
Sbjct: 4 TTGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENVVAL 68
>gi|332993404|gb|AEF03459.1| stress response protein CspD [Alteromonas sp. SN2]
Length = 72
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE G+D+F H S + G +L GQ VTYD Q
Sbjct: 1 MAIGKVKWFNNAKGFGFIVPED---GGEDIFAHYSTIQMEGYRSLKAGQEVTYDVQQGPK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--LHAENI 64
>gi|298292870|ref|YP_003694809.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296929381|gb|ADH90190.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ +
Sbjct: 1 MAAGTVKWFNGQKGFGFIQPDN---GGPDVFVHISAVERAGLVGLNEGQKISYEVETDRR 57
Query: 62 NGKYSAENLKLV 73
+GK SA +L+ V
Sbjct: 58 SGKSSAGSLQAV 69
>gi|197106500|ref|YP_002131877.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
gi|196479920|gb|ACG79448.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI P+ G DVF+H SAV + L +L+EGQ V ++ ++
Sbjct: 1 MTIGTVKWFNPAKGFGFIQPDN---GGPDVFVHISAVERSTLGSLSEGQKVGFELERDQR 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKTSAGQLQ 67
>gi|209884203|ref|YP_002288060.1| hypothetical protein OCAR_5060 [Oligotropha carboxidovorans OM5]
gi|209872399|gb|ACI92195.1| conserved domain protein [Oligotropha carboxidovorans OM5]
Length = 66
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP KGYGFI P G G DVF+H SAV AGL +L EGQ + ++ V N
Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSSLNEGQTIEFEEVAN-- 55
Query: 62 NGKYSAENLKL 72
GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66
>gi|89074299|ref|ZP_01160789.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|90578632|ref|ZP_01234442.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|89050003|gb|EAR55537.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|90439465|gb|EAS64646.1| putative Cold shock-like protein [Vibrio angustum S14]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+A G +L EGQ V++D Q
Sbjct: 4 ATGIVKWFNDEKGFGFITQDN---GGADVFVHFRAIAGEGFKSLAEGQKVSFDVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PQAANVERI 69
>gi|301059113|ref|ZP_07200063.1| cold shock protein CspB [delta proteobacterium NaphS2]
gi|300446786|gb|EFK10601.1| cold shock protein CspB [delta proteobacterium NaphS2]
Length = 66
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KGYGFI E G DVF+H S + G L EG V+++ +
Sbjct: 1 MAEGTVKWFDEKKGYGFIEQED----GPDVFVHFSGINGTGFKTLNEGARVSFEVEEGQR 56
Query: 62 NGKYSAENLKLV 73
+A N+ ++
Sbjct: 57 G--PAAANVTVI 66
>gi|310778967|ref|YP_003967300.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
gi|309748290|gb|ADO82952.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
Length = 67
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E G+D+F+H S + G L EG+ VT+D V+
Sbjct: 1 MLKGTVKWFNSEKGFGFITSE----EGNDLFVHFSEINKPGFKTLEEGEEVTFDVVEGQK 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTP 65
>gi|157963078|ref|YP_001503112.1| cold-shock DNA-binding domain-containing protein [Shewanella
pealeana ATCC 700345]
gi|167625248|ref|YP_001675542.1| cold-shock DNA-binding domain-containing protein [Shewanella
halifaxensis HAW-EB4]
gi|157848078|gb|ABV88577.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
700345]
gi|167355270|gb|ABZ77883.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 69
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+ S G L EGQ V+++ Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAITSDGFKTLAEGQKVSFEVEQGQKG 60
Query: 63 GKYSAENL 70
A N+
Sbjct: 61 --LQAANV 66
>gi|25026862|ref|NP_736916.1| putative cold shock protein [Corynebacterium efficiens YS-314]
gi|259506076|ref|ZP_05748978.1| cold shock protein [Corynebacterium efficiens YS-314]
gi|23492142|dbj|BAC17116.1| putative cold shock protein [Corynebacterium efficiens YS-314]
gi|259166364|gb|EEW50918.1| cold shock protein [Corynebacterium efficiens YS-314]
Length = 67
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+NP+KG+GFI P DVF+H S + G L E QLV ++ +
Sbjct: 1 MAQGTVKWFNPEKGFGFIAPSD---GSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAK 57
Query: 62 NGKYSAENLKLV 73
A++++ V
Sbjct: 58 G--LQAQSVRAV 67
>gi|311067393|ref|YP_003972316.1| CspB protein [Bacillus atrophaeus 1942]
gi|310867910|gb|ADP31385.1| CspB [Bacillus atrophaeus 1942]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MLEGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQTVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|296536432|ref|ZP_06898531.1| cold shock protein [Roseomonas cervicalis ATCC 49957]
gi|296263249|gb|EFH09775.1| cold shock protein [Roseomonas cervicalis ATCC 49957]
Length = 81
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI PE DVF+H S V AGL L EG+ V ++ Q
Sbjct: 14 MPIGTVKWFNPTKGFGFIQPED---GSKDVFVHISDVQRAGLQGLNEGERVEFEL-QRGR 69
Query: 62 NGKYSAENLKLV 73
GK SA NLK V
Sbjct: 70 EGKVSAGNLKQV 81
>gi|239930549|ref|ZP_04687502.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672]
gi|291438911|ref|ZP_06578301.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672]
gi|291341806|gb|EFE68762.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672]
Length = 127
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L L+ + +
Sbjct: 56 GD--QALSLTLLDPTPS 70
>gi|30265215|ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str. Ames]
gi|47778401|ref|YP_022086.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor']
gi|196039541|ref|ZP_03106846.1| cold shock protein CspC [Bacillus cereus NVH0597-99]
gi|218232486|ref|YP_002369965.1| cold shock protein CspC [Bacillus cereus B4264]
gi|218900310|ref|YP_002448721.1| cold shock protein CspC [Bacillus cereus G9842]
gi|227817950|ref|YP_002817959.1| cold shock protein CspC [Bacillus anthracis str. CDC 684]
gi|228911024|ref|ZP_04074832.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL
200]
gi|228917794|ref|ZP_04081333.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228955435|ref|ZP_04117440.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228968291|ref|ZP_04129289.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|229050851|ref|ZP_04194403.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676]
gi|229063847|ref|ZP_04200151.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603]
gi|229072644|ref|ZP_04205846.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185]
gi|229112598|ref|ZP_04242135.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15]
gi|229158754|ref|ZP_04286812.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342]
gi|229169899|ref|ZP_04297595.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621]
gi|229181451|ref|ZP_04308779.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W]
gi|254724384|ref|ZP_05186168.1| cold shock protein CspC [Bacillus anthracis str. A1055]
gi|254735591|ref|ZP_05193298.1| cold shock protein CspC [Bacillus anthracis str. Western North
America USA6153]
gi|49040749|sp|P62169|CSPC_BACAN RecName: Full=Cold shock-like protein CspC
gi|49061093|sp|P62170|CSPC_BACCE RecName: Full=Cold shock-like protein CspC
gi|49061097|sp|P62171|CSPC_BACCR RecName: Full=Cold shock-like protein CspC
gi|1405474|emb|CAA63609.1| CspC protein [Bacillus cereus]
gi|30259892|gb|AAP29078.1| cold shock protein CspC [Bacillus anthracis str. Ames]
gi|47552106|gb|AAT34561.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor']
gi|196029701|gb|EDX68303.1| cold shock protein CspC [Bacillus cereus NVH0597-99]
gi|218160443|gb|ACK60435.1| cold shock protein CspC [Bacillus cereus B4264]
gi|218544035|gb|ACK96429.1| cold shock protein CspC [Bacillus cereus G9842]
gi|227003474|gb|ACP13217.1| cold shock protein CspC [Bacillus anthracis str. CDC 684]
gi|228602026|gb|EEK59519.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W]
gi|228613613|gb|EEK70742.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621]
gi|228624738|gb|EEK81507.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342]
gi|228670978|gb|EEL26285.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15]
gi|228710620|gb|EEL62593.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185]
gi|228716484|gb|EEL68188.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603]
gi|228722507|gb|EEL73900.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676]
gi|228791464|gb|EEM39068.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228804227|gb|EEM50841.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228841843|gb|EEM86951.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228848679|gb|EEM93525.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL
200]
Length = 65
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G
Sbjct: 2 QGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVVKL 65
>gi|16124918|ref|NP_419482.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
gi|221233638|ref|YP_002516074.1| cold shock protein [Caulobacter crescentus NA1000]
gi|13421882|gb|AAK22650.1| cold-shock domain family protein [Caulobacter crescentus CB15]
gi|220962810|gb|ACL94166.1| cold shock protein [Caulobacter crescentus NA1000]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P D F+H SAV +GL ++ EGQ + Y+ ++
Sbjct: 1 MATGTVKWFNAAKGFGFIQPSD---GSADAFVHISAVERSGLGSIDEGQKLNYELERDQR 57
Query: 62 NGKYSAENLK 71
+GK SA L
Sbjct: 58 SGKMSAGQLT 67
>gi|16077975|ref|NP_388791.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221308749|ref|ZP_03590596.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221313071|ref|ZP_03594876.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221317997|ref|ZP_03599291.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322271|ref|ZP_03603565.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
SMY]
gi|296332331|ref|ZP_06874792.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673610|ref|YP_003865282.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis subsp. spizizenii str.
W23]
gi|321314635|ref|YP_004206922.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis BSn5]
gi|416834|sp|P32081|CSPB_BACSU RecName: Full=Cold shock protein CspB; AltName: Full=Major cold
shock protein
gi|114793771|pdb|2ES2|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Cold
Shock Protein Bs-Cspb In Complex With Hexathymidine
gi|116667125|pdb|2F52|A Chain A, Solution Structure Of Cold Shock Protein Cspb From
Bacillus Subtilis In Complex With Heptathymidine
gi|157830704|pdb|1CSP|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
Shock Protein, Cspb: A Universal Nucleic-Acid Binding
Domain
gi|157830705|pdb|1CSQ|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
Shock Protein, Cspb: A Universal Nucleic-Acid Binding
Domain
gi|157832148|pdb|1NMF|A Chain A, Major Cold-Shock Protein, Nmr, 20 Structures
gi|157832149|pdb|1NMG|A Chain A, Major Cold-Shock Protein, Nmr, Minimized Average
Structure
gi|297761|emb|CAA42235.1| cold shock protein (CspB) [Bacillus subtilis]
gi|1239985|emb|CAA65693.1| cold shock protein [Bacillus subtilis subsp. subtilis str. 168]
gi|1336658|gb|AAB01346.1| cold shock protein CspB [Bacillus subtilis subsp. subtilis str.
JH642]
gi|2633233|emb|CAB12738.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis subsp. subtilis str.
168]
gi|291483360|dbj|BAI84435.1| major cold-shock protein [Bacillus subtilis subsp. natto BEST195]
gi|296150249|gb|EFG91137.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411854|gb|ADM36973.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis subsp. spizizenii str.
W23]
gi|320020909|gb|ADV95895.1| major cold-shock protein, RNA helicase co-factor, RNA
co-chaperone [Bacillus subtilis BSn5]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MLEGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|256391893|ref|YP_003113457.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256358119|gb|ACU71616.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+ +KG+GFI + G DVF H S +++ G L EGQ V ++ Q+
Sbjct: 1 MTVGTVKWFKAEKGFGFIEQDD---GGPDVFAHFSNISAEGFRELLEGQRVEFEIAQSPK 57
Query: 62 NGKYSAENLKLV 73
AEN++ +
Sbjct: 58 G--PHAENIRPI 67
>gi|152988646|ref|YP_001347949.1| cold shock domain-containing protein CspD [Pseudomonas aeruginosa
PA7]
gi|150963804|gb|ABR85829.1| cold shock domain protein CspD [Pseudomonas aeruginosa PA7]
Length = 90
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG +D+F H SA+ G L GQ V ++ +Q
Sbjct: 1 MLSGKVKWFNNAKGYGFILAEGR---DEDLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LHAINI 64
>gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291005339|ref|ZP_06563312.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909827|emb|CAL99939.1| cold-shock DNA-binding domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 130
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GF+T + G+DV++ SA+ +G+ +L GQ V +D Q
Sbjct: 1 MPTGRVKWFDAEKGFGFVTQD----GGEDVYVRASAL-PSGVESLKTGQRVDFDMAQGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++L+ +
Sbjct: 56 G--PQALKVQLLDPPPS 70
>gi|291085708|ref|ZP_06353810.2| putative cold shock protein [Citrobacter youngae ATCC 29220]
gi|291070213|gb|EFE08322.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
Length = 100
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 36 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 91
Query: 64 KYSAENL 70
SA N+
Sbjct: 92 -PSAANV 97
>gi|229099617|ref|ZP_04230545.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29]
gi|229105794|ref|ZP_04236423.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28]
gi|228677683|gb|EEL31931.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28]
gi|228683913|gb|EEL37863.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29]
Length = 65
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + A G
Sbjct: 2 QGKVKWFNAEKGFGFIERED----GEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVVKL 65
>gi|254381082|ref|ZP_04996447.1| cold shock protein [Streptomyces sp. Mg1]
gi|194339992|gb|EDX20958.1| cold shock protein [Streptomyces sp. Mg1]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G GDDVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNAAKGFGFIEQDG---GGDDVFAHFSNIAAQGFRELLEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENLKL 72
+AEN+ L
Sbjct: 58 G--PTAENIVL 66
>gi|52840671|ref|YP_094470.1| cold shock protein CspD [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54296462|ref|YP_122831.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris]
gi|296105977|ref|YP_003617677.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy]
gi|52627782|gb|AAU26523.1| cold shock protein CspD [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53750247|emb|CAH11641.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris]
gi|295647878|gb|ADG23725.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy]
gi|307609235|emb|CBW98700.1| hypothetical protein LPW_05081 [Legionella pneumophila 130b]
Length = 77
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD V +
Sbjct: 1 MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVVNGER 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ + +++
Sbjct: 58 G--LHASNVVALSENAE 72
>gi|330504261|ref|YP_004381130.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
gi|328918547|gb|AEB59378.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E SG DVF+H A+ G L EGQ V + Q
Sbjct: 4 RETGTVKWFNDSKGYGFIQRE----SGPDVFVHYRAIRGEGHRTLVEGQKVEFGVTQGQK 59
Query: 62 NGKYSAENLKLV 73
AE++ +
Sbjct: 60 G--LQAEDVSAL 69
>gi|303240450|ref|ZP_07326967.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
CD2]
gi|302592015|gb|EFL61746.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
CD2]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G+DVF+H SA+ + G L EGQ V ++
Sbjct: 1 MLNGTVKWFNAGKGFGFIERED----GEDVFVHFSAINADGYKTLNEGQKVQFEVENGQR 56
Query: 62 NGKYSAENL 70
A+N+
Sbjct: 57 G--LQAKNV 63
>gi|229823989|ref|ZP_04450058.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC
51271]
gi|229786343|gb|EEP22457.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC
51271]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ+V ++ +
Sbjct: 1 MEQGKVKWFNSEKGFGFIEREN----GNDVFVHFSAILGEGYKTLEEGQVVNFEVEEGAR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--PQAANVEKL 66
>gi|146283032|ref|YP_001173185.1| cold shock protein CspA [Pseudomonas stutzeri A1501]
gi|145571237|gb|ABP80343.1| cold shock protein CspA [Pseudomonas stutzeri A1501]
Length = 136
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI +G DVF+H A+ G +L EGQ V + +Q
Sbjct: 71 RETGTVKWFNDAKGYGFIQR----GNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 126
Query: 62 NGKYSAENL 70
AE++
Sbjct: 127 G--LQAEDV 133
>gi|118592774|ref|ZP_01550163.1| cold shock protein [Stappia aggregata IAM 12614]
gi|118434544|gb|EAV41196.1| cold shock protein [Stappia aggregata IAM 12614]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G D F+H +AV AG+ + EGQ + YD ++
Sbjct: 1 MTTGTVKWFNSSKGFGFIQPDN---GGPDAFVHITAVERAGMHEIVEGQKIGYDMERDTK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKMSACNLQ 67
>gi|160878713|ref|YP_001557681.1| cold-shock DNA-binding domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160427379|gb|ABX40942.1| cold-shock DNA-binding domain protein [Clostridium
phytofermentans ISDg]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFI+ E G+DVF+H S + G +L EGQ V ++ VQ
Sbjct: 1 MNKGTVKWFNNQKGFGFISDE----QGNDVFVHYSGLNMDGFKSLEEGQEVAFEVVQGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVTRI 66
>gi|326332155|ref|ZP_08198437.1| cold-shock domain family protein [Nocardioidaceae bacterium
Broad-1]
gi|325950053|gb|EGD42111.1| cold-shock domain family protein [Nocardioidaceae bacterium
Broad-1]
Length = 132
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KG+GF++ + G DV++H A+ L G V + Q
Sbjct: 1 MPTGKVKWFDATKGFGFLSQDD----GPDVYVHADALPEGAAKTLKAGTRVEFGIAQGRR 56
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ +S +
Sbjct: 57 G--EQALSVTVLERSPS 71
>gi|308270407|emb|CBX27019.1| Major cold shock protein [uncultured Desulfobacterium sp.]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KGYGFI E G+DVF+H SA+ AG L+EG+ VT+D Q +
Sbjct: 1 MANGIVKWFSNKKGYGFIEQEN----GEDVFVHHSAINGAGFKTLSEGEKVTFDIEQGEK 56
Query: 62 NGKYSAENLKLV 73
+A N+ +
Sbjct: 57 G--PAAVNVTKL 66
>gi|291166639|gb|EFE28685.1| hypothetical protein HMPREF0389_00602 [Filifactor alocis ATCC
35896]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI+ EG DVF+H SA+ + G L EGQ V ++ V
Sbjct: 1 MKQGKVKWFNAEKGFGFISVEGEN----DVFVHFSAIQTEGFKTLEEGQDVEFEIVDGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQASNVTKL 66
>gi|256751272|ref|ZP_05492152.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|289578721|ref|YP_003477348.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
italicus Ab9]
gi|297544955|ref|YP_003677257.1| cold-shock DNA-binding domain-containing protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|307266235|ref|ZP_07547777.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|326390559|ref|ZP_08212115.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
ethanolicus JW 200]
gi|256749827|gb|EEU62851.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|289528434|gb|ADD02786.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
italicus Ab9]
gi|296842730|gb|ADH61246.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|306918765|gb|EFN48997.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|325993384|gb|EGD51820.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
ethanolicus JW 200]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MVRGKVKWFNAEKGYGFIERED----GTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEAAK 56
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 57 G--PQASKVRKV 66
>gi|303242124|ref|ZP_07328614.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
CD2]
gi|302590311|gb|EFL60069.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
CD2]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KG+GFI + G+DVF+H SA+ G L EG V ++ V+
Sbjct: 1 MERGRVKWFNAEKGFGFIERD----GGNDVFVHFSAINMDGYKTLEEGTEVQFEVVEGAK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--PQASNVT 64
>gi|290475740|ref|YP_003468629.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
gi|289175062|emb|CBJ81865.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITP DVF+H SA+ + G L+EGQ V ++
Sbjct: 5 TGIVKWFNESKGFGFITPAD---GSKDVFVHFSAIMNDGFKTLSEGQQVEFEIQNGPKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAANVTAL 69
>gi|146311055|ref|YP_001176129.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
638]
gi|145317931|gb|ABP60078.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
Length = 73
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D
Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHLGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + +
Sbjct: 58 GN--HASVIVPIEAEA 71
>gi|331016432|gb|EGH96488.1| cold-shock DNA-binding protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 106
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 39 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 93
Query: 64 KYSAENL 70
AE++
Sbjct: 94 -LQAEDV 99
>gi|330872660|gb|EGH06809.1| cold-shock protein [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 106
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 39 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 93
Query: 64 KYSAENL 70
AE++
Sbjct: 94 -LQAEDV 99
>gi|331091468|ref|ZP_08340306.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA]
gi|330404024|gb|EGG83574.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+DVF+H + + G +L EGQ V ++ +
Sbjct: 1 MNKGTVKWFNNQKGYGFISDEA----GNDVFVHYTGLNMEGFKSLEEGQAVEFEITEGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVVKL 66
>gi|320355243|ref|YP_004196582.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
DSM 2032]
gi|320123745|gb|ADW19291.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
DSM 2032]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ G +L EG+ V ++ V
Sbjct: 1 MAEGTVKWFNDSKGFGFIQQD----GGKDVFVHYSAIQGQGFKSLKEGERVKFEVVSGAK 56
Query: 62 NGKYSAENLKLV 73
+AEN+ +
Sbjct: 57 G--PAAENVTKL 66
>gi|310767159|gb|ADP12109.1| cold shock-like protein [Erwinia sp. Ejp617]
Length = 75
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q
Sbjct: 1 MMTGTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|238919617|ref|YP_002933132.1| cold shock-like protein CspC [Edwardsiella ictaluri 93-146]
gi|269138905|ref|YP_003295606.1| cold shock protein [Edwardsiella tarda EIB202]
gi|294636002|ref|ZP_06714441.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|317492183|ref|ZP_07950613.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|238869186|gb|ACR68897.1| conserved domain protein [Edwardsiella ictaluri 93-146]
gi|267984566|gb|ACY84395.1| cold shock protein [Edwardsiella tarda EIB202]
gi|291090679|gb|EFE23240.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|304558891|gb|ADM41555.1| Cold shock protein CspC [Edwardsiella tarda FL6-60]
gi|316919888|gb|EFV41217.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNEAKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQHVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVTAI 69
>gi|254505942|ref|ZP_05118087.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
16]
gi|323498518|ref|ZP_08103511.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326]
gi|219551165|gb|EED28145.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
16]
gi|323316407|gb|EGA69425.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIKQEN----GPDVFAHFSAITGDGFRTLAEGQKVEFVITQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+K V
Sbjct: 61 -PQAENIKAV 69
>gi|33592837|ref|NP_880481.1| cold shock-like protein [Bordetella pertussis Tohama I]
gi|61221519|sp|P0A352|CSPA_BORPE RecName: Full=Cold shock-like protein CspA
gi|61221520|sp|P0A353|CSPA_BORBR RecName: Full=Cold shock-like protein CspA
gi|61221521|sp|P0A354|CSPA_BORPA RecName: Full=Cold shock-like protein CspA
gi|4468119|emb|CAB38009.1| CspA protein; cold shock protein A [Bordetella pertussis Tohama
I]
gi|33572485|emb|CAE42057.1| cold shock-like protein [Bordetella pertussis Tohama I]
gi|332382250|gb|AEE67097.1| cold shock-like protein [Bordetella pertussis CS]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++
Sbjct: 1 METGVVKWFNAEKGYGFITPE---AGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPK 57
Query: 62 NGKYSAENLKLV 73
A ++++
Sbjct: 58 G--PQATKIQIL 67
>gi|124267389|ref|YP_001021393.1| cold-shock DNA-binding protein family protein [Methylibium
petroleiphilum PM1]
gi|124260164|gb|ABM95158.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
PM1]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI +G G DVF H + G L E Q V ++ Q
Sbjct: 4 QTGTVKWFNEAKGFGFIAQDG---GGADVFAHFRDIQGNGFKTLQENQRVEFEVKQGQKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PQAANIRPL 69
>gi|28900407|ref|NP_800062.1| cold shock DNA-binding domain-containing protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|91227011|ref|ZP_01261548.1| cold shock DNA-binding domain protein [Vibrio alginolyticus
12G01]
gi|153837377|ref|ZP_01990044.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
AQ3810]
gi|254228898|ref|ZP_04922320.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
gi|260362063|ref|ZP_05775059.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
K5030]
gi|260877358|ref|ZP_05889713.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AN-5034]
gi|260898395|ref|ZP_05906891.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
Peru-466]
gi|260902872|ref|ZP_05911267.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AQ4037]
gi|262396755|ref|YP_003288608.1| cold shock protein CspE [Vibrio sp. Ex25]
gi|269968331|ref|ZP_06182351.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B]
gi|28808718|dbj|BAC61895.1| cold shock DNA-binding domain protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|91188813|gb|EAS75099.1| cold shock DNA-binding domain protein [Vibrio alginolyticus
12G01]
gi|149749292|gb|EDM60071.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
AQ3810]
gi|151938575|gb|EDN57411.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
gi|262340349|gb|ACY54143.1| cold shock protein CspE [Vibrio sp. Ex25]
gi|269827049|gb|EEZ81363.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B]
gi|308085077|gb|EFO34772.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
Peru-466]
gi|308090568|gb|EFO40263.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AN-5034]
gi|308107799|gb|EFO45339.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AQ4037]
gi|308113783|gb|EFO51323.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
K5030]
gi|328470361|gb|EGF41272.1| cold shock protein CspE [Vibrio parahaemolyticus 10329]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 5 ATGTVKWFNETKGFGFIQQEN----GPDVFAHFSAITGDGFRTLVEGQKVEFVISQGQKG 60
Query: 63 GKYSAENLKLV 73
AE +K++
Sbjct: 61 --PQAEQIKVL 69
>gi|302552922|ref|ZP_07305264.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
gi|302470540|gb|EFL33633.1| cold shock domain-containing protein CspD [Streptomyces
viridochromogenes DSM 40736]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDVAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|163802086|ref|ZP_02195982.1| cold shock-like protein CspD [Vibrio sp. AND4]
gi|159174227|gb|EDP59035.1| cold shock-like protein CspD [Vibrio sp. AND4]
Length = 72
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEIEKGPK 57
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 58 G--SHASSVVPIE 68
>gi|156936422|ref|YP_001440338.1| major cold shock protein [Cronobacter sakazakii ATCC BAA-894]
gi|156534676|gb|ABU79502.1| hypothetical protein ESA_04323 [Cronobacter sakazakii ATCC
BAA-894]
Length = 70
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFITP+ DVF+H SA+ + G L EGQ V++
Sbjct: 6 TGLVKWFNAEKGFGFITPDN---GSKDVFVHFSAIQNNGFKTLEEGQKVSFSVESGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAI 70
>gi|56459785|ref|YP_155066.1| cold shock protein [Idiomarina loihiensis L2TR]
gi|56178795|gb|AAV81517.1| Cold shock protein [Idiomarina loihiensis L2TR]
Length = 71
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E D+F H S + G L GQ V ++ +
Sbjct: 1 MATGKVKWFNNSKGFGFIESEDREG---DIFAHYSTIEMEGYRTLKAGQPVEFELEEGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ VP +++
Sbjct: 58 G--LHANNI--VPGAAD 70
>gi|148546265|ref|YP_001266367.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida F1]
gi|148510323|gb|ABQ77183.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ +G +L EGQ VT++ VQ
Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGSGFKSLKEGQKVTFEAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADKVQPV 69
>gi|323139562|ref|ZP_08074607.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322395181|gb|EFX97737.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AG+ +L+EGQ ++YD + +
Sbjct: 1 MFYGTVKWFNAQKGFGFIQPDD---GGKDVFVHISAVEQAGMRDLSEGQKLSYDVIDDRR 57
Query: 62 NGKYSA 67
+GK SA
Sbjct: 58 SGKASA 63
>gi|294053655|ref|YP_003547313.1| cold-shock DNA-binding domain protein [Coraliomargarita
akajimensis DSM 45221]
gi|293612988|gb|ADE53143.1| cold-shock DNA-binding domain protein [Coraliomargarita
akajimensis DSM 45221]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ +KGYGFI P+ D+F+H S + S G L +GQ V ++
Sbjct: 1 MSTGTVKWFDAEKGYGFIQPDD---GSKDLFVHHSEIQSDGYAKLEDGQKVEFEVGSGQK 57
Query: 62 NGKYSAENLKL 72
A +K
Sbjct: 58 G--PCATQVKP 66
>gi|312200423|ref|YP_004020484.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
gi|311231759|gb|ADP84614.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ +G G DVF+H SA+ + G +L EGQ V ++ VQ
Sbjct: 1 MAQGAVKWFNAEKGFGFISVDG---GGPDVFVHFSAIVADGYKSLDEGQTVQFEIVQGQK 57
Query: 62 NGKYSAENLKLV 73
AE + V
Sbjct: 58 G--PQAEKVMPV 67
>gi|148253260|ref|YP_001237845.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|146405433|gb|ABQ33939.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
Length = 71
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +L+EGQ ++++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLSEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL L
Sbjct: 58 KGKGPKAVNLVL 69
>gi|146342873|ref|YP_001207921.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
gi|146195679|emb|CAL79706.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
Length = 71
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +LTEGQ ++++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL L
Sbjct: 58 KGKGPKAVNLVL 69
>gi|330810451|ref|YP_004354913.1| transcription factor, Csd family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378559|gb|AEA69909.1| putative Transcription factor, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 89
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KGYGFI G +D+F H SA+ G L GQ VT+D +Q
Sbjct: 7 NGKVKWFNNAKGYGFIIAAG--RDDEDLFAHYSAINMEGYKTLKAGQPVTFDVIQGPKG- 63
Query: 64 KYSAENLKLV 73
A N+++V
Sbjct: 64 -LHAVNIRVV 72
>gi|325263633|ref|ZP_08130367.1| conserved domain protein [Clostridium sp. D5]
gi|324031342|gb|EGB92623.1| conserved domain protein [Clostridium sp. D5]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFIT + G+DVF+H S +A G L +GQ VT+D Q +
Sbjct: 1 MNNGTVKWFNAQKGFGFIT---NAADGEDVFVHFSGLAMDGFKTLEDGQNVTFDITQGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQAVNV 64
>gi|297568667|ref|YP_003690011.1| cold-shock DNA-binding domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924582|gb|ADH85392.1| cold-shock DNA-binding domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + SG DVF+H +A+ G +L EG V ++ V
Sbjct: 1 MAEGTVKWFNDAKGFGFIAQD----SGSDVFVHHTAILGQGFKSLQEGARVEFEIVDGPK 56
Query: 62 NGKYSAENLKLV 73
+A N++ +
Sbjct: 57 G--PAASNVRQL 66
>gi|89096927|ref|ZP_01169818.1| cold shock protein [Bacillus sp. NRRL B-14911]
gi|89088307|gb|EAR67417.1| cold shock protein [Bacillus sp. NRRL B-14911]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI T G DVF+H SA+ G L EGQ V++D +
Sbjct: 1 MATGKVKWFNAEKGFGFIE----TSEGQDVFVHFSAIQGEGFKTLDEGQEVSFDIEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQASNV 63
>gi|256822338|ref|YP_003146301.1| cold-shock DNA-binding domain-containing protein [Kangiella
koreensis DSM 16069]
gi|256795877|gb|ACV26533.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM
16069]
Length = 68
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G+DVF+H A+ G L EGQ V +D Q
Sbjct: 5 TGTVKWFNESKGFGFIEQE----QGEDVFVHFRAIQGDGFKTLAEGQRVEFDIEQGPKG- 59
Query: 64 KYSAENLKLV 73
A N+ V
Sbjct: 60 -AQAANVTKV 68
>gi|237732149|ref|ZP_04562630.1| cspB [Citrobacter sp. 30_2]
gi|226907688|gb|EEH93606.1| cspB [Citrobacter sp. 30_2]
Length = 97
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP DVF+H SA+ S L E Q V + Q
Sbjct: 33 TGLVKWFNPEKGFGFITPAD---GSKDVFVHFSAIQSNEFKTLNENQKVEFGVEQGPKG- 88
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 89 -PSAINVVAL 97
>gi|107022084|ref|YP_620411.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia AU 1054]
gi|116689028|ref|YP_834651.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170732317|ref|YP_001764264.1| cold-shock DNA-binding domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|206561351|ref|YP_002232116.1| cold shock-like protein [Burkholderia cenocepacia J2315]
gi|254246036|ref|ZP_04939357.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
gi|105892273|gb|ABF75438.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
AU 1054]
gi|116647117|gb|ABK07758.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
HI2424]
gi|124870812|gb|EAY62528.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
gi|169815559|gb|ACA90142.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
MC0-3]
gi|198037393|emb|CAR53328.1| cold shock-like protein [Burkholderia cenocepacia J2315]
Length = 67
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMDGFKTLKENQRVSFDVKVGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QAANIQAV 67
>gi|296103113|ref|YP_003613259.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295057572|gb|ADF62310.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 73
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + + +
Sbjct: 58 GN--HASLIVPIEAET 71
>gi|282860603|ref|ZP_06269669.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|282564339|gb|EFB69875.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
Length = 127
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + GDDVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GDDVFVHSSVL-PAGVDALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVVVLDPTPS 70
>gi|126699599|ref|YP_001088496.1| cold shock protein [Clostridium difficile 630]
gi|254975590|ref|ZP_05272062.1| cold shock protein [Clostridium difficile QCD-66c26]
gi|255092978|ref|ZP_05322456.1| cold shock protein [Clostridium difficile CIP 107932]
gi|255101124|ref|ZP_05330101.1| cold shock protein [Clostridium difficile QCD-63q42]
gi|255306991|ref|ZP_05351162.1| cold shock protein [Clostridium difficile ATCC 43255]
gi|255314719|ref|ZP_05356302.1| cold shock protein [Clostridium difficile QCD-76w55]
gi|255517393|ref|ZP_05385069.1| cold shock protein [Clostridium difficile QCD-97b34]
gi|255650500|ref|ZP_05397402.1| cold shock protein [Clostridium difficile QCD-37x79]
gi|260683608|ref|YP_003214893.1| cold shock protein [Clostridium difficile CD196]
gi|260687268|ref|YP_003218402.1| cold shock protein [Clostridium difficile R20291]
gi|306520461|ref|ZP_07406808.1| cold shock protein [Clostridium difficile QCD-32g58]
gi|115251036|emb|CAJ68867.1| Major cold shock protein CspC [Clostridium difficile]
gi|260209771|emb|CBA63577.1| cold shock protein [Clostridium difficile CD196]
gi|260213285|emb|CBE04832.1| cold shock protein [Clostridium difficile R20291]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI+ E DDVF H SA+ ++G +L EGQ V++D V+
Sbjct: 1 MNNGIVKWFNNEKGFGFISME----GRDDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGAR 56
Query: 62 NGKYSAENLKLV 73
AEN+ ++
Sbjct: 57 G--PQAENITIL 66
>gi|20808157|ref|NP_623328.1| cold shock proteins [Thermoanaerobacter tengcongensis MB4]
gi|20516747|gb|AAM24932.1| Cold shock proteins [Thermoanaerobacter tengcongensis MB4]
Length = 66
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ VQ
Sbjct: 1 MVRGKVKWFNAEKGYGFIERED----GTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQAAK 56
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 57 G--PQASKVRKL 66
>gi|16759589|ref|NP_455206.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16764006|ref|NP_459621.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142638|ref|NP_805980.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56414236|ref|YP_151311.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|146310817|ref|YP_001175891.1| cold shock protein CspE [Enterobacter sp. 638]
gi|161615160|ref|YP_001589125.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|162139604|ref|YP_215645.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|167990632|ref|ZP_02571732.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|194444501|ref|YP_002039870.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194448211|ref|YP_002044662.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472567|ref|ZP_03078551.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735055|ref|YP_002113746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195873911|ref|ZP_02699682.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197251616|ref|YP_002145603.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197262485|ref|ZP_03162559.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197300846|ref|ZP_02661676.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197363159|ref|YP_002142796.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198244715|ref|YP_002214617.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390458|ref|ZP_03217069.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204930521|ref|ZP_03221451.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205351917|ref|YP_002225718.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205357082|ref|ZP_02344593.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205358472|ref|ZP_02656696.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205358940|ref|ZP_02665405.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205359626|ref|ZP_02830749.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205360370|ref|ZP_02682831.2| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|213053415|ref|ZP_03346293.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213425108|ref|ZP_03357858.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213580429|ref|ZP_03362255.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213648627|ref|ZP_03378680.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213857366|ref|ZP_03384337.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224582464|ref|YP_002636262.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238911579|ref|ZP_04655416.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289809995|ref|ZP_06540624.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|311280471|ref|YP_003942702.1| cold-shock DNA-binding domain-containing protein [Enterobacter
cloacae SCF1]
gi|25296131|pir||AH0579 cold shock-like protein cspE [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16419141|gb|AAL19580.1| RNA chaperone, negative regulator of cspA transcription
[Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16501881|emb|CAD05106.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138269|gb|AAO69840.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128493|gb|AAV77999.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|145317693|gb|ABP59840.1| cold shock protein E (CspE) [Enterobacter sp. 638]
gi|161364524|gb|ABX68292.1| hypothetical protein SPAB_02928 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403164|gb|ACF63386.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406515|gb|ACF66734.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458931|gb|EDX47770.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194710557|gb|ACF89778.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195631943|gb|EDX50463.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197094636|emb|CAR60158.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197215319|gb|ACH52716.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197240740|gb|EDY23360.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197290243|gb|EDY29599.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197939231|gb|ACH76564.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199602903|gb|EDZ01449.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204320455|gb|EDZ05658.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205271698|emb|CAR36529.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205324288|gb|EDZ12127.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205330839|gb|EDZ17603.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205334064|gb|EDZ20828.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205340419|gb|EDZ27183.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205344148|gb|EDZ30912.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349743|gb|EDZ36374.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|224466991|gb|ACN44821.1| cold shock protein E [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261245902|emb|CBG23703.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992359|gb|ACY87244.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|308749666|gb|ADO49418.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
gi|312911660|dbj|BAJ35634.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320084898|emb|CBY94688.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321226208|gb|EFX51259.1| Cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322613239|gb|EFY10182.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322621307|gb|EFY18164.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623727|gb|EFY20565.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628999|gb|EFY25778.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631721|gb|EFY28475.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637543|gb|EFY34245.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641883|gb|EFY38513.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646727|gb|EFY43233.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651428|gb|EFY47808.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322653121|gb|EFY49455.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658841|gb|EFY55096.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664889|gb|EFY61082.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668891|gb|EFY65043.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670603|gb|EFY66736.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675344|gb|EFY71420.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682185|gb|EFY78210.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684985|gb|EFY80982.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322713693|gb|EFZ05264.1| RNA chaperone, negative regulator of cspA transcription
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323128946|gb|ADX16376.1| cold shock-like protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323193956|gb|EFZ79158.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197952|gb|EFZ83074.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202001|gb|EFZ87061.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207134|gb|EFZ92087.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323210399|gb|EFZ95290.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214339|gb|EFZ99090.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221490|gb|EGA05904.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225534|gb|EGA09764.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231092|gb|EGA15208.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234076|gb|EGA18165.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238229|gb|EGA22287.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242537|gb|EGA26561.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248486|gb|EGA32420.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251298|gb|EGA35170.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323259226|gb|EGA42869.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261634|gb|EGA45209.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264816|gb|EGA48317.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272347|gb|EGA55754.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326622372|gb|EGE28717.1| RNA chaperone, negative regulator of cspA transcription
[Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
gi|326626956|gb|EGE33299.1| cold shock-like protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332987574|gb|AEF06557.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 69
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVTAL 69
>gi|297200512|ref|ZP_06917909.1| cold shock protein B [Streptomyces sviceus ATCC 29083]
gi|197709638|gb|EDY53672.1| cold shock protein B [Streptomyces sviceus ATCC 29083]
Length = 127
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVETLKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVAILDPTPS 70
>gi|149242120|pdb|2I5L|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
Protein Variant Bs-Cspb M1rE3KK65I
Length = 67
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 3 KGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRG- 57
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 58 -PQAANVTI 65
>gi|85059078|ref|YP_454780.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans']
gi|84779598|dbj|BAE74375.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans']
Length = 73
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE G+D+F H S + G L GQ+V ++ Q
Sbjct: 1 METGKVKWFNNAKGFGFICPEN---GGEDIFAHYSMIHMDGYRTLKAGQVVRFEVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|16974805|pdb|1HZB|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
gi|16974806|pdb|1HZB|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
Length = 66
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|284046448|ref|YP_003396788.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
gi|283950669|gb|ADB53413.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
14684]
Length = 67
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ DKG+GFITP+ + D+F+H + + S G +L EG V+YD
Sbjct: 1 MATGTVKWFSDDKGFGFITPDDQS---KDLFVHHTGIISDGYRSLPEGAKVSYDSEPGPK 57
Query: 62 NGKYSAENLKLV 73
K A N++ +
Sbjct: 58 GPK--AVNVQQI 67
>gi|254249432|ref|ZP_04942752.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
gi|124875933|gb|EAY65923.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
Length = 67
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+
Sbjct: 1 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKMLAEGQKVSYETKHGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQASNI 64
>gi|323160675|gb|EFZ46614.1| cold shock-like protein cspG [Escherichia coli E128010]
Length = 70
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFSIESGAKG- 61
Query: 64 KYSAENLK 71
+A N+
Sbjct: 62 -PAAGNVT 68
>gi|302822137|ref|XP_002992728.1| hypothetical protein SELMODRAFT_186937 [Selaginella
moellendorffii]
gi|300139469|gb|EFJ06209.1| hypothetical protein SELMODRAFT_186937 [Selaginella
moellendorffii]
Length = 159
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFITP+ G+D+F+H+S++ + G +L +G+ V + +++ +G+
Sbjct: 10 GKVKWFNSAKGFGFITPDD---GGEDLFVHQSSIHADGFRSLKDGEAVEFTIDRSE-DGR 65
Query: 65 YSAENLK 71
A ++
Sbjct: 66 TKALDVT 72
>gi|283796457|ref|ZP_06345610.1| cold shock protein [Clostridium sp. M62/1]
gi|291075865|gb|EFE13229.1| cold shock protein [Clostridium sp. M62/1]
gi|295091398|emb|CBK77505.1| cold-shock DNA-binding protein family [Clostridium cf.
saccharolyticum K10]
Length = 66
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H+G++KW+N KGYGFI E G+DVF+H S + G +L EG V ++ V
Sbjct: 1 MHKGTVKWFNNQKGYGFICDE----EGNDVFVHYSGLNMEGFKSLDEGAQVEFEVVNGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVTKL 66
>gi|146340323|ref|YP_001205371.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
gi|146193129|emb|CAL77140.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
Length = 69
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++GS+KW+NP KGYGFI P G DVF+H SAV AGL L E Q + YD V++
Sbjct: 4 YKGSVKWFNPTKGYGFIKPTG---GDKDVFVHISAVERAGLTTLNENQAIEYDLVES--R 58
Query: 63 GKYSAENLKL 72
GK SAENLKL
Sbjct: 59 GKTSAENLKL 68
>gi|311032516|ref|ZP_07710606.1| major cold shock protein [Bacillus sp. m3-13]
Length = 66
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI + GDDVF+H SA+ G +L EGQ VT++ VQ +
Sbjct: 1 MLQGTVKWFNAEKGFGFIER----QDGDDVFVHFSAIQGEGFKSLEEGQSVTFEIVQGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 GD--QAANVNK 65
>gi|308274214|emb|CBX30813.1| Major cold shock protein [uncultured Desulfobacterium sp.]
Length = 66
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G DVF+H SA+ + G +L EG V+++ Q +
Sbjct: 1 MVDGTVKWFNDKKGFGFIEQEN----GPDVFVHHSAINATGFKSLREGDKVSFEIEQGNK 56
Query: 62 NGKYSAENLKL 72
SA N+ +
Sbjct: 57 G--PSAVNVTV 65
>gi|254438790|ref|ZP_05052284.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
antarcticus 307]
gi|198254236|gb|EDY78550.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
antarcticus 307]
Length = 68
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VT+D +
Sbjct: 1 MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTFDV-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAVNLAL 67
>gi|254420854|ref|ZP_05034578.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
gi|196187031|gb|EDX82007.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
BAL3]
Length = 67
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KGYGFI P+ G DVF+H +AV AGL L E V Y+ +
Sbjct: 1 MATGTVKWFNPTKGYGFIQPDS---GGSDVFVHVTAVQKAGLQGLDENAKVEYELE--NQ 55
Query: 62 NGKYSAENLKLV 73
GK SA +LKL+
Sbjct: 56 RGKTSAIDLKLL 67
>gi|16262549|ref|NP_435342.1| CspA5 cold shock protein transcriptional regulator [Sinorhizobium
meliloti 1021]
gi|307300703|ref|ZP_07580478.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307319113|ref|ZP_07598543.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|14523160|gb|AAK64754.1| CspA7 cold shock protein [Sinorhizobium meliloti 1021]
gi|306895220|gb|EFN25976.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306904237|gb|EFN34822.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 67
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+YD Q+
Sbjct: 1 MPKGTVKFFNDDKGFGFITPED---GGTDVFVHVSALQHGG--SLKEGDKVSYDVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67
>gi|331002349|ref|ZP_08325867.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107
str. F0167]
gi|330410165|gb|EGG89599.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107
str. F0167]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++RG++KW+N KGYGFI+ E G DVF+H S + G L EG V YD +
Sbjct: 1 MNRGTVKWFNNQKGYGFISDE----GGSDVFVHFSDLNMEGFKTLDEGISVEYDLTEGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +V
Sbjct: 57 G--PQAVNVTVV 66
>gi|257884506|ref|ZP_05664159.1| cold-shock protein [Enterococcus faecium 1,231,501]
gi|257820344|gb|EEV47492.1| cold-shock protein [Enterococcus faecium 1,231,501]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ V+YD
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQGDGFKTLEEGQAVSYDVEDGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAINI 63
>gi|218134817|ref|ZP_03463621.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC
43243]
gi|217990202|gb|EEC56213.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC
43243]
Length = 111
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E SG+DVF+H S + G +L EG V +D V
Sbjct: 48 KGTVKWFNNQKGYGFISDE----SGNDVFVHYSGLNMEGFKSLDEGAEVEFDVVNGAKG- 102
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 103 -PQATNVTKL 111
>gi|116251065|ref|YP_766903.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|209548412|ref|YP_002280329.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|241203661|ref|YP_002974757.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115255713|emb|CAK06794.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|209534168|gb|ACI54103.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|240857551|gb|ACS55218.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 69
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N KG+GFI P+ DVF+H SAV AG+ L EGQ + YD V++
Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDD---GSTDVFVHISAVERAGMRELVEGQKIRYDLVRDKK 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKNSADNLQ 67
>gi|157831974|pdb|1MJC|A Chain A, Crystal Structure Of Cspa, The Major Cold Shock Protein
Of Escherichia Coli
Length = 69
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 5 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 60
Query: 64 KYSAENLK 71
+A N+
Sbjct: 61 -PAAGNVT 67
>gi|89074300|ref|ZP_01160790.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34]
gi|90578631|ref|ZP_01234441.1| Putative cold shock-like protein cspG [Vibrio angustum S14]
gi|89050004|gb|EAR55538.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34]
gi|90439464|gb|EAS64645.1| Putative cold shock-like protein cspG [Vibrio angustum S14]
Length = 69
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFIT + G DVF+H A+ G LTEGQ V+Y+ Q
Sbjct: 4 ATGTVKWFNEEKGFGFITQDN---GGADVFVHFRAITGDGFKTLTEGQKVSYETEQGPKG 60
Query: 63 GKYSAENLKL 72
A N++
Sbjct: 61 --LQAANVEK 68
>gi|323137446|ref|ZP_08072524.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322397433|gb|EFX99956.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 69
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AG+ +L+EGQ ++YD + +
Sbjct: 1 MFYGTVKWFNSQKGFGFIQPDD---GGKDVFVHISAVEQAGMRDLSEGQKLSYDIIDDRR 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKASAGKLQ 67
>gi|300716061|ref|YP_003740864.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661]
gi|299061897|emb|CAX59013.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661]
Length = 75
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+D+F H S + G L GQ V +D +
Sbjct: 1 METGTVKWFNNAKGFGFICPVS---GGEDIFAHYSTIKMDGYRTLKAGQQVQFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|311694945|gb|ADP97818.1| cold shock, CspA [marine bacterium HP15]
Length = 69
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI + G DVF+H SA+ ++G LTEGQ V + Q
Sbjct: 5 KTGHVKWFNESKGFGFIAQD----GGSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKG 60
Query: 63 GKYSAENLKLV 73
AEN+ V
Sbjct: 61 --PQAENVTPV 69
>gi|238924737|ref|YP_002938253.1| putative cold-shock DNA-binding domain protein [Eubacterium
rectale ATCC 33656]
gi|238876412|gb|ACR76119.1| putative cold-shock DNA-binding domain protein [Eubacterium
rectale ATCC 33656]
gi|291526111|emb|CBK91698.1| cold-shock DNA-binding protein family [Eubacterium rectale DSM
17629]
gi|291527154|emb|CBK92740.1| cold-shock DNA-binding protein family [Eubacterium rectale
M104/1]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFIT E G DVF+H S + G L EG V +D
Sbjct: 1 MSKGTVKWFNNQKGYGFITAED----GKDVFVHFSGLNMEGFKTLEEGAAVEFDITDGAK 56
Query: 62 NGKYSAENLKLVP 74
A N+++V
Sbjct: 57 G--PQAVNVEVVK 67
>gi|126731842|ref|ZP_01747646.1| cold shock protein CspA [Sagittula stellata E-37]
gi|126707669|gb|EBA06731.1| cold shock protein CspA [Sagittula stellata E-37]
Length = 68
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVFLH SAV AG+ + +GQ VT+D ++
Sbjct: 1 MANGTVKWFNSTKGFGFIQPE---HGSKDVFLHISAVERAGINRIEDGQAVTFDV-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAINLAL 67
>gi|27365451|ref|NP_760979.1| cold shock domain-containing protein CspD [Vibrio vulnificus
CMCP6]
gi|37680508|ref|NP_935117.1| cold shock-like protein CspD [Vibrio vulnificus YJ016]
gi|27361599|gb|AAO10506.1| cold shock domain protein CspD [Vibrio vulnificus CMCP6]
gi|37199256|dbj|BAC95088.1| cold shock-like protein CspD [Vibrio vulnificus YJ016]
Length = 76
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ VTY+ +
Sbjct: 4 MATGTVKWFNNAKGFGFICSDQEEG---DIFAHYSTIQMDGYRTLKAGQQVTYEIEKGPK 60
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 61 G--CHASSVVPLE 71
>gi|28377937|ref|NP_784829.1| cold shock protein CspP [Lactobacillus plantarum WCFS1]
gi|254556121|ref|YP_003062538.1| cold shock protein CspP [Lactobacillus plantarum JDM1]
gi|300766640|ref|ZP_07076557.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180118|ref|YP_003924246.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|2493768|sp|P71478|CSP1_LACPL RecName: Full=Cold shock protein 1
gi|1620431|emb|CAA70005.1| csp [Lactobacillus plantarum]
gi|9968450|emb|CAC06094.1| cold shock protein [Lactobacillus plantarum]
gi|28270771|emb|CAD63676.1| cold shock protein CspP [Lactobacillus plantarum WCFS1]
gi|254045048|gb|ACT61841.1| cold shock protein CspP [Lactobacillus plantarum JDM1]
gi|300495740|gb|EFK30891.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308045609|gb|ADN98152.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKGYGFIT E G+DVF+H SA+ + G L EGQ VT+D +D
Sbjct: 1 MKNGTVKWFNADKGYGFITGED----GNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|157691644|ref|YP_001486106.1| major cold shock protein [Bacillus pumilus SAFR-032]
gi|157680402|gb|ABV61546.1| major cold shock protein [Bacillus pumilus SAFR-032]
Length = 79
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 14 MLEGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNR 69
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 70 G--PQAANVNK 78
>gi|29830697|ref|NP_825331.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29607810|dbj|BAC71866.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELQEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|52079383|ref|YP_078174.1| major cold-shock protein [Bacillus licheniformis ATCC 14580]
gi|52784743|ref|YP_090572.1| CspB [Bacillus licheniformis ATCC 14580]
gi|154685371|ref|YP_001420532.1| CspB [Bacillus amyloliquefaciens FZB42]
gi|308172897|ref|YP_003919602.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7]
gi|319646836|ref|ZP_08001065.1| cold shock protein cspB [Bacillus sp. BT1B_CT2]
gi|52002594|gb|AAU22536.1| major cold-shock protein [Bacillus licheniformis ATCC 14580]
gi|52347245|gb|AAU39879.1| CspB [Bacillus licheniformis ATCC 14580]
gi|154351222|gb|ABS73301.1| CspB [Bacillus amyloliquefaciens FZB42]
gi|307605761|emb|CBI42132.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7]
gi|317391424|gb|EFV72222.1| cold shock protein cspB [Bacillus sp. BT1B_CT2]
gi|328552537|gb|AEB23029.1| major cold-shock protein [Bacillus amyloliquefaciens TA208]
gi|328910937|gb|AEB62533.1| major cold-shock protein [Bacillus amyloliquefaciens LL3]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MLEGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|30020489|ref|NP_832120.1| cold shock protein [Bacillus cereus ATCC 14579]
gi|206971664|ref|ZP_03232614.1| cold shock protein CspA [Bacillus cereus AH1134]
gi|218231164|ref|YP_002367103.1| cold shock protein CspA [Bacillus cereus B4264]
gi|218897365|ref|YP_002445776.1| cold shock protein CspA [Bacillus cereus G9842]
gi|228901011|ref|ZP_04065222.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|228921113|ref|ZP_04084445.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228939557|ref|ZP_04102143.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228952772|ref|ZP_04114844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228958674|ref|ZP_04120390.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228965387|ref|ZP_04126478.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228972409|ref|ZP_04133019.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979023|ref|ZP_04139386.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|229044152|ref|ZP_04191834.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|229069923|ref|ZP_04203203.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|229079591|ref|ZP_04212127.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
gi|229109840|ref|ZP_04239424.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
gi|229127796|ref|ZP_04256782.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
gi|229144998|ref|ZP_04273393.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|229150609|ref|ZP_04278823.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|229178759|ref|ZP_04306122.1| Cold shock protein cspB [Bacillus cereus 172560W]
gi|229190497|ref|ZP_04317494.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|296502953|ref|YP_003664653.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|49035523|sp|Q81DK5|CSPE_BACCR RecName: Full=Cold shock-like protein CspE
gi|29896040|gb|AAP09321.1| Cold shock protein [Bacillus cereus ATCC 14579]
gi|206733649|gb|EDZ50821.1| cold shock protein CspA [Bacillus cereus AH1134]
gi|218159121|gb|ACK59113.1| cold shock protein CspA [Bacillus cereus B4264]
gi|218544454|gb|ACK96848.1| cold shock protein CspA [Bacillus cereus G9842]
gi|228592842|gb|EEK50664.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|228604698|gb|EEK62156.1| Cold shock protein cspB [Bacillus cereus 172560W]
gi|228632696|gb|EEK89311.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|228638447|gb|EEK94882.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|228655561|gb|EEL11413.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
gi|228673592|gb|EEL28852.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
gi|228703705|gb|EEL56155.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
gi|228713191|gb|EEL65086.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|228725177|gb|EEL76452.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|228780687|gb|EEM28902.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|228787284|gb|EEM35253.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794301|gb|EEM41816.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228800990|gb|EEM47891.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228806891|gb|EEM53438.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228820100|gb|EEM66139.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228838529|gb|EEM83838.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228858608|gb|EEN03057.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|296324005|gb|ADH06933.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|326940103|gb|AEA15999.1| cold shock protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI G+DVF+H SA+ G +L EGQ V+++ + +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVAD----GNDVFVHFSAITGDGFKSLDEGQEVSFEVEEGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|308186235|ref|YP_003930366.1| Cold shock-like protein cspD [Pantoea vagans C9-1]
gi|308056745|gb|ADO08917.1| Cold shock-like protein cspD [Pantoea vagans C9-1]
Length = 73
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D +
Sbjct: 1 METGTVKWFNNSKGFGFICPVG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|262040627|ref|ZP_06013865.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041991|gb|EEW43024.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 70
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ D+F+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDLFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENLK 71
+A N+
Sbjct: 62 -PAAGNVT 68
>gi|237747860|ref|ZP_04578340.1| cold-shock DNA-binding protein family protein [Oxalobacter
formigenes OXCC13]
gi|229379222|gb|EEO29313.1| cold-shock DNA-binding protein family protein [Oxalobacter
formigenes OXCC13]
Length = 78
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ +G D+F H S + + G +L EGQ V ++
Sbjct: 12 METGTVKWFNNSKGFGFITPDN---NGADLFAHFSEIQAGGFKSLEEGQKVKFESGVGQK 68
Query: 62 NGKYSAENLKL 72
A+N++
Sbjct: 69 G--PQAKNIQP 77
>gi|239930668|ref|ZP_04687621.1| cold-shock domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
gi|291439030|ref|ZP_06578420.1| cold-shock domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
gi|291341925|gb|EFE68881.1| cold-shock domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|209547434|ref|YP_002279352.1| cold-shock DNA-binding domain-containing protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209538678|gb|ACI58612.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V++D Q+
Sbjct: 1 MPTGTVKFFNDDKGFGFITPED---GGQDVFVHVSALQRGG--SLREGDKVSFDVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ +
Sbjct: 56 TGKSKAENVSTL 67
>gi|119963512|ref|YP_948311.1| cold shock protein [Arthrobacter aurescens TC1]
gi|119950371|gb|ABM09282.1| putative cold shock protein [Arthrobacter aurescens TC1]
Length = 95
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFITP+ + DVF+H S + + G L E Q V ++ Q
Sbjct: 29 MALGTVKWFNAEKGFGFITPDDA---DGDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 85
Query: 62 NGKYSAENLKLV 73
A + +V
Sbjct: 86 G--PQATGVTVV 95
>gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
gi|62389068|ref|YP_224470.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
gi|21322938|dbj|BAB97567.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
gi|41324401|emb|CAF18741.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P D+F+H S + +G NL E Q V ++ +
Sbjct: 1 MAQGTVKWFNGEKGFGFIAPND---GSADLFVHYSEIQGSGFRNLEENQPVEFEVGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQQVRAL 67
>gi|284009245|emb|CBA76349.1| cold shock protein [Arsenophonus nasoniae]
Length = 70
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
M+ + G++KW+N KG+GFITPE DVF+H +A+ S G L EGQ V +D +
Sbjct: 1 MMSKVKGNVKWFNEAKGFGFITPED---GSKDVFVHFTAIKSEGFKTLAEGQKVEFDITE 57
Query: 59 NDANGKYSAENLKLV 73
+ SA N+ +
Sbjct: 58 GEKG--PSAINVVAI 70
>gi|222086272|ref|YP_002544804.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221723720|gb|ACM26876.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 70
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +K++N DKG+GFITP+G DVF+H SA+ ++G+ +L EGQ VT+D +
Sbjct: 1 MATKGIVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 58 MGKGPKAVNIQ 68
>gi|197119555|ref|YP_002139982.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|253699707|ref|YP_003020896.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
gi|197088915|gb|ACH40186.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|251774557|gb|ACT17138.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + GDDVF+H SA+ G +L EG VT+D V+
Sbjct: 1 MANGTVKWFNDSKGFGFIEQDN----GDDVFVHFSAITGDGFKSLAEGDSVTFDVVKGPK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|262278327|ref|ZP_06056112.1| cold shock protein [Acinetobacter calcoaceticus RUH2202]
gi|299769266|ref|YP_003731292.1| cold shock protein [Acinetobacter sp. DR1]
gi|262258678|gb|EEY77411.1| cold shock protein [Acinetobacter calcoaceticus RUH2202]
gi|298699354|gb|ADI89919.1| cold shock protein [Acinetobacter sp. DR1]
Length = 71
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G++KW+N KG+GFI PE SG DVF H S +A++G L EGQ V + Q
Sbjct: 6 IM-KGTVKWFNEAKGFGFIQPE----SGPDVFAHFSEIANSGFRTLAEGQRVEFSVAQGQ 60
Query: 61 ANGKYSAENLKLV 73
+A N+ +
Sbjct: 61 KG--PNAVNIVAL 71
>gi|253733849|ref|ZP_04868014.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130]
gi|297209461|ref|ZP_06925859.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911485|ref|ZP_07128934.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70]
gi|253728152|gb|EES96881.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130]
gi|296885922|gb|EFH24857.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300887664|gb|EFK82860.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70]
Length = 71
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H S +AS G L EGQ VT++ +
Sbjct: 6 MNNGTVKWFNAEKGFGFIEQEN----GGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 61
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 62 GD--QAVNVQTV 71
>gi|251789968|ref|YP_003004689.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae
Ech1591]
gi|271500838|ref|YP_003333863.1| cold-shock DNA-binding domain-containing protein [Dickeya
dadantii Ech586]
gi|307130778|ref|YP_003882794.1| cold shock protein [Dickeya dadantii 3937]
gi|247538589|gb|ACT07210.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
gi|270344393|gb|ACZ77158.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
gi|306528307|gb|ADM98237.1| cold shock protein [Dickeya dadantii 3937]
Length = 73
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+D+F H S + G L GQ+V + Q
Sbjct: 1 METGTVKWFNNAKGFGFICPES---GGEDIFAHYSTIQMDGYRTLKAGQVVQFTVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|78221561|ref|YP_383308.1| cold-shock DNA-binding protein family protein [Geobacter
metallireducens GS-15]
gi|78192816|gb|ABB30583.1| cold-shock DNA-binding protein family [Geobacter metallireducens
GS-15]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF+H SA+ G +LTEG VT+D V+
Sbjct: 1 MANGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAINGDGFKSLTEGDRVTFDVVKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|17986781|ref|NP_539415.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
gi|148560167|ref|YP_001259392.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225627956|ref|ZP_03785992.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|237815906|ref|ZP_04594903.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|297248787|ref|ZP_06932505.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
gi|306843139|ref|ZP_07475759.1| cold shock protein [Brucella sp. BO2]
gi|17982411|gb|AAL51679.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
gi|148371424|gb|ABQ61403.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225617119|gb|EEH14165.1| cold shock protein CSPA [Brucella ceti str. Cudo]
gi|237789204|gb|EEP63415.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
gi|297175956|gb|EFH35303.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
gi|306286662|gb|EFM58220.1| cold shock protein [Brucella sp. BO2]
Length = 83
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N +KG+GFI P+ G D+F+H SAV ++GL L + Q V+Y+ +
Sbjct: 13 MAQTGQVKFFNTEKGFGFIKPDD---GGADIFVHISAVQASGLPGLADNQKVSYETEPDR 69
Query: 61 ANGKYSAENLKL 72
A N+ +
Sbjct: 70 RGKGPKAVNITI 81
>gi|330936728|gb|EGH40913.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 105
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 38 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 92
Query: 64 KYSAENL 70
AE++
Sbjct: 93 -LQAEDV 98
>gi|294678657|ref|YP_003579272.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003]
gi|294477477|gb|ADE86865.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003]
Length = 68
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI PE G DVF+H SAV AGL L +GQ + YD +
Sbjct: 1 MAKGTVKWFNQTKGFGFIAPES---GGKDVFVHISAVERAGLRGLNDGQAINYDL-EKGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL +
Sbjct: 57 DGRESAINLAI 67
>gi|269216140|ref|ZP_06159994.1| cold shock protein B [Slackia exigua ATCC 700122]
gi|269130399|gb|EEZ61477.1| cold shock protein B [Slackia exigua ATCC 700122]
Length = 79
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++P+KGYGFI+ G+D+F+H S + G L EG V ++
Sbjct: 13 MAEGTVKWFSPEKGYGFISQAD----GEDLFVHFSEIKMDGYKTLEEGARVQFEVTTGS- 67
Query: 62 NGKYSAENLKLV 73
NGK A N+ +
Sbjct: 68 NGKLQASNVSPL 79
>gi|261210697|ref|ZP_05924989.1| cold shock protein CspD [Vibrio sp. RC341]
gi|260840182|gb|EEX66762.1| cold shock protein CspD [Vibrio sp. RC341]
Length = 73
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|302560009|ref|ZP_07312351.1| cold-shock domain family protein [Streptomyces griseoflavus
Tu4000]
gi|302477627|gb|EFL40720.1| cold-shock domain family protein [Streptomyces griseoflavus
Tu4000]
Length = 127
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L ++ + +
Sbjct: 56 GD--QALSLTILDPTPS 70
>gi|222528760|ref|YP_002572642.1| cold-shock DNA-binding domain-containing protein
[Caldicellulosiruptor bescii DSM 6725]
gi|222455607|gb|ACM59869.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
bescii DSM 6725]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+NP+KGYGFI+ + G+DVF+H SA+ G L EGQ V +D V+ +
Sbjct: 2 RGKVKWFNPEKGYGFISADN----GEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTERGN 57
Query: 64 KYSAENLKLVP 74
A N++ V
Sbjct: 58 --QALNVRKVK 66
>gi|330954575|gb|EGH54835.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
Length = 92
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EG + +D+F+H SA+ G L GQ V ++
Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKS--DEDLFVHFSAIEMEGYKTLKAGQKVRFEVAHGPK 58
Query: 62 NGKYSAENL 70
A +
Sbjct: 59 G--LQAIKI 65
>gi|302671806|ref|YP_003831766.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus
B316]
gi|302396279|gb|ADL35184.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus
B316]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V YD +Q +
Sbjct: 1 MNKGTVKWFNNQKGYGFISDEA----GNDVFVHYSGLNMEGFKSLEEGASVEYDVIQGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAVNVNKL 66
>gi|167586483|ref|ZP_02378871.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
Length = 67
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIKMDGFKTLKENQRVSFDVKVGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIQAI 67
>gi|145297910|ref|YP_001140751.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142850682|gb|ABO89003.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 69
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI G DVF+H S++ S G L EGQ V + Q
Sbjct: 6 TGQVKWFNETKGFGFIE----QSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ L+
Sbjct: 61 -PQAENVTLL 69
>gi|222054634|ref|YP_002536996.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
gi|221563923|gb|ACM19895.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
Length = 66
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI + G+DVF+H SA+ G +L EG+ V++D
Sbjct: 1 MAQGKVKWFNDAKGFGFIEQDN----GEDVFVHFSAIVGEGFKSLAEGEAVSFDVTNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--LQAANVKKI 66
>gi|66046414|ref|YP_236255.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|63257121|gb|AAY38217.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|330972895|gb|EGH72961.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 92
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EG + +D+F+H SA+ G L GQ V ++
Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKS--DEDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPK 58
Query: 62 NGKYSAENL 70
A +
Sbjct: 59 G--LQAIKI 65
>gi|54303515|ref|YP_133508.1| putative cold shock-like protein [Photobacterium profundum SS9]
gi|46916945|emb|CAG23708.1| putative Cold shock-like protein [Photobacterium profundum SS9]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+A+ G L EGQ V++D Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIATEGFKTLAEGQKVSFDVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --PQAANVVAL 69
>gi|171777642|ref|ZP_02919307.1| hypothetical protein STRINF_00142 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|171283170|gb|EDT48594.1| hypothetical protein STRINF_00142 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E SG DVF H S + S G +L +GQ V ++ Q
Sbjct: 1 MVQGTVKWFNAEKGFGFISQE----SGPDVFAHFSEIQSNGFKSLEDGQKVNFEVEQGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQATNITKI 66
>gi|188586832|ref|YP_001918377.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179351519|gb|ACB85789.1| cold-shock DNA-binding protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 65
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N D+GYGFI + GDDVF+H SA+ G L +GQ V ++ V+
Sbjct: 2 QGKVKWFNADRGYGFIERD----GGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEGPRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|312795412|ref|YP_004028334.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
gi|312167187|emb|CBW74190.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFIT + G+D+F H S + + G +L E Q V+++
Sbjct: 1 METGIVKWFNDAKGYGFITADS---GGEDLFAHFSEIRAEGFKSLKESQRVSFEVKNGXK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 GK--QAANIRPL 67
>gi|312882977|ref|ZP_07742708.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369137|gb|EFP96658.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFITPE G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TNGTVKWFNEEKGFGFITPEN---GGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --PQAANV 67
>gi|163941162|ref|YP_001646046.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|229012730|ref|ZP_04169900.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
gi|229018744|ref|ZP_04175594.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|229024986|ref|ZP_04181415.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|229061117|ref|ZP_04198468.1| Cold shock protein cspB [Bacillus cereus AH603]
gi|229134360|ref|ZP_04263173.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
gi|229168275|ref|ZP_04296000.1| Cold shock protein cspB [Bacillus cereus AH621]
gi|229174199|ref|ZP_04301734.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|163863359|gb|ABY44418.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
gi|228609320|gb|EEK66607.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|228615101|gb|EEK72201.1| Cold shock protein cspB [Bacillus cereus AH621]
gi|228648981|gb|EEL05003.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
gi|228718200|gb|EEL69838.1| Cold shock protein cspB [Bacillus cereus AH603]
gi|228736321|gb|EEL86887.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|228742550|gb|EEL92700.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|228748565|gb|EEL98420.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGDGFKSLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|27366046|ref|NP_761574.1| Cold shock protein [Vibrio vulnificus CMCP6]
gi|37679688|ref|NP_934297.1| cold shock protein [Vibrio vulnificus YJ016]
gi|320156560|ref|YP_004188939.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O]
gi|27362246|gb|AAO11101.1| Cold shock protein [Vibrio vulnificus CMCP6]
gi|37198433|dbj|BAC94268.1| cold shock protein [Vibrio vulnificus YJ016]
gi|319931872|gb|ADV86736.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + G DVF+H A+ S G L EGQ V+++ +
Sbjct: 6 TGTVKWFNETKGFGFISQDN---GGKDVFVHFRAIVSEGFKTLAEGQKVSFNVEEGQKG- 61
Query: 64 KYSAENLKLV 73
A N+ ++
Sbjct: 62 -PQASNVTVI 70
>gi|83746258|ref|ZP_00943311.1| Cold shock protein [Ralstonia solanacearum UW551]
gi|207742557|ref|YP_002258949.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609]
gi|83727008|gb|EAP74133.1| Cold shock protein [Ralstonia solanacearum UW551]
gi|206593950|emb|CAQ60877.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ + E G+++F H SA+ G L EGQ V ++ Q
Sbjct: 1 MASGTVKWFNDAKGFGFISLD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QATNIQ 65
>gi|328953011|ref|YP_004370345.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328453335|gb|AEB09164.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N KG+GFI+ E G DVF+H S++ S G +L+E V ++ VQ
Sbjct: 1 MKETGRVKWFNDSKGFGFISREN----GPDVFVHHSSIQSKGFRSLSENDEVEFEVVQGQ 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 KG--LQAQNVVKI 67
>gi|311031676|ref|ZP_07709766.1| cold shock protein [Bacillus sp. m3-13]
Length = 65
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI + DDVF+H SA+ G +L EGQ VT++ Q
Sbjct: 1 MLEGKVKWFNAEKGFGFIEVD----GQDDVFVHFSAIQGEGFKSLEEGQTVTFEIEQGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQATNVQK 65
>gi|283479166|emb|CAY75082.1| Cold shock-like protein cspE (CSP-E) [Erwinia pyrifoliae DSM
12163]
Length = 79
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 15 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 70
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 71 -PSAANVAAI 79
>gi|59713778|ref|YP_206553.1| cold shock protein [Vibrio fischeri ES114]
gi|197337528|ref|YP_002158152.1| hypothetical protein VFMJ11_A0603 [Vibrio fischeri MJ11]
gi|59482026|gb|AAW87665.1| cold shock protein [Vibrio fischeri ES114]
gi|197314780|gb|ACH64229.1| conserved domain protein [Vibrio fischeri MJ11]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI E G DVF H S + S G L EGQ V++D Q
Sbjct: 4 ATGTVKWFNEEKGFGFIAQEN----GPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQKG 59
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 60 --PQAANIVAL 68
>gi|15925694|ref|NP_373228.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15928289|ref|NP_375822.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus
N315]
gi|21284352|ref|NP_647440.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2]
gi|57651099|ref|YP_187517.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus COL]
gi|82752283|ref|YP_418024.1| cold shock protein [Staphylococcus aureus RF122]
gi|148269136|ref|YP_001248079.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
aureus subsp. aureus JH9]
gi|150395218|ref|YP_001317893.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|151222817|ref|YP_001333639.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156981019|ref|YP_001443278.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3]
gi|221142463|ref|ZP_03566956.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253316706|ref|ZP_04839919.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255007476|ref|ZP_05146077.2| cold shock protein [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|269204342|ref|YP_003283611.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus ED98]
gi|284023028|ref|ZP_06377426.1| cold shock protein [Staphylococcus aureus subsp. aureus 132]
gi|295429287|ref|ZP_06821909.1| cold shock-like protein cspLA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297589211|ref|ZP_06947852.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8]
gi|304379938|ref|ZP_07362667.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|2226347|gb|AAB61743.1| CspB [Staphylococcus aureus RN4220]
gi|13702661|dbj|BAB43801.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus
N315]
gi|14248479|dbj|BAB58866.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50]
gi|21205796|dbj|BAB96488.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2]
gi|57285285|gb|AAW37379.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
aureus COL]
gi|82657814|emb|CAI82269.1| cold shock protein [Staphylococcus aureus RF122]
gi|147742205|gb|ABQ50503.1| cold-shock DNA-binding protein family [Staphylococcus aureus
subsp. aureus JH9]
gi|149947670|gb|ABR53606.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|150375617|dbj|BAF68877.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156723154|dbj|BAF79571.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3]
gi|262076632|gb|ACY12605.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269942290|emb|CBI50705.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20]
gi|283471919|emb|CAQ51130.1| conserved domain protein [Staphylococcus aureus subsp. aureus
ST398]
gi|285818367|gb|ADC38854.1| Cold shock protein CspG [Staphylococcus aureus 04-02981]
gi|295127046|gb|EFG56690.1| cold shock-like protein cspLA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297577722|gb|EFH96435.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8]
gi|298695962|gb|ADI99184.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
aureus ED133]
gi|302334319|gb|ADL24512.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302752582|gb|ADL66759.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304341518|gb|EFM07428.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312436869|gb|ADQ75940.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH60]
gi|312831043|emb|CBX35885.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129533|gb|EFT85525.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS03]
gi|315195215|gb|EFU25603.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS00]
gi|315197908|gb|EFU28241.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS01]
gi|320141408|gb|EFW33251.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144390|gb|EFW36155.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323439708|gb|EGA97426.1| cold shock protein [Staphylococcus aureus O11]
gi|323443281|gb|EGB00898.1| cold shock protein [Staphylococcus aureus O46]
gi|329315425|gb|AEB89838.1| Cold shock protein [Staphylococcus aureus subsp. aureus T0131]
gi|329725714|gb|EGG62193.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
21172]
gi|329731711|gb|EGG68071.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
21189]
gi|329732388|gb|EGG68738.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
21193]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H S +AS G L EGQ VT++ +
Sbjct: 1 MNNGTVKWFNAEKGFGFIEQEN----GGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 56
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 57 GD--QAVNVQTV 66
>gi|328880109|emb|CCA53348.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S + G LTEG+ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNIQGNGYRELTEGEAVTFDITQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|149378085|ref|ZP_01895807.1| cold shock protein [Marinobacter algicola DG893]
gi|149357654|gb|EDM46154.1| cold shock protein [Marinobacter algicola DG893]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI + G DVF+H SA+ ++G LTEGQ V + Q
Sbjct: 2 KTGHVKWFNESKGFGFIAQD----GGSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKG 57
Query: 63 GKYSAENLKLV 73
AEN+ V
Sbjct: 58 --PQAENVTPV 66
>gi|146308090|ref|YP_001188555.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina ymp]
gi|145576291|gb|ABP85823.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E SG DVF+H A+ G L EGQ V + Q
Sbjct: 4 RETGTVKWFNDSKGYGFIQRE----SGPDVFVHYRAIRGEGHRTLIEGQKVEFGVTQGQK 59
Query: 62 NGKYSAENLKLV 73
AE++ +
Sbjct: 60 G--LQAEDVSAL 69
>gi|304415296|ref|ZP_07395986.1| cold shock protein [Candidatus Regiella insecticola LSR1]
gi|304282851|gb|EFL91324.1| cold shock protein [Candidatus Regiella insecticola LSR1]
Length = 71
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H+G +KW+N KG+GFITPE DVF+H SA+ G L EGQ V++
Sbjct: 6 HKGQVKWFNESKGFGFITPED---GSKDVFVHFSAIQDNGFKTLAEGQNVSFSIENGAKG 62
Query: 63 GKYSAENLKLV 73
SA N+ +
Sbjct: 63 --PSAANVTPL 71
>gi|293400346|ref|ZP_06644492.1| conserved domain protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306746|gb|EFE47989.1| conserved domain protein [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI+ E G DVF+H S + G +L EGQ VT++ V++D
Sbjct: 2 KGKVKWFNAEKGYGFISSED----GKDVFVHYSQILQDGYKSLEEGQTVTFEAVESDKG- 56
Query: 64 KYSAENLKL 72
A N+++
Sbjct: 57 -LQARNVEV 64
>gi|210617492|ref|ZP_03291595.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787]
gi|210149279|gb|EEA80288.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ KG+GFIT + +SG D+F+H S +A G L EGQ V++D Q
Sbjct: 1 MNTGTVKWFDSQKGFGFIT---NEQSGKDIFVHFSGIALNGFKTLEEGQQVSFDTTQGPR 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--EQAVNVNYI 67
>gi|83647395|ref|YP_435830.1| cold shock protein [Hahella chejuensis KCTC 2396]
gi|83635438|gb|ABC31405.1| Cold shock protein [Hahella chejuensis KCTC 2396]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF H SA+ +G LTEGQ V + Q
Sbjct: 6 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAITGSGFKTLTEGQKVEFTITQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENIVPL 69
>gi|58039299|ref|YP_191263.1| cold shock protein [Gluconobacter oxydans 621H]
gi|58001713|gb|AAW60607.1| Cold shock protein [Gluconobacter oxydans 621H]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI S++ DVF+H SA+ AGL NL EGQ V+Y+ ++
Sbjct: 1 MATGTVKWFNATKGFGFIQ---SSDGTTDVFVHISALEKAGLQNLNEGQQVSYEI-EDGR 56
Query: 62 NGKYSAENLKLV 73
NG+ SA +LK +
Sbjct: 57 NGRKSAGSLKAL 68
>gi|304396175|ref|ZP_07378057.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308187103|ref|YP_003931234.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
gi|304356544|gb|EFM20909.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308057613|gb|ADO09785.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQSVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|152977400|ref|YP_001376917.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152026152|gb|ABS23922.1| putative cold-shock DNA-binding domain protein [Bacillus
cytotoxicus NVH 391-98]
Length = 65
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDD+F+H SA+ G L EGQ V +D V
Sbjct: 2 QGRVKWFNAEKGFGFIERED----GDDIFVHFSAIQQEGYKTLEEGQNVEFDIVDGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAVNVVKL 65
>gi|88798111|ref|ZP_01113698.1| Cold shock protein [Reinekea sp. MED297]
gi|88779308|gb|EAR10496.1| Cold shock protein [Reinekea sp. MED297]
Length = 153
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GF+T + G+DVF+H ++ G +L EGQ V + V++
Sbjct: 85 REEGLVKWFNVSKGFGFVTRDN----GEDVFVHFRSIRGRGHRSLQEGQRVRFGVVESSK 140
Query: 62 NGKYSAENLKLVPK 75
AE++ +V +
Sbjct: 141 G--LQAEDVTIVRQ 152
>gi|302824155|ref|XP_002993723.1| hypothetical protein SELMODRAFT_187582 [Selaginella
moellendorffii]
gi|300138447|gb|EFJ05215.1| hypothetical protein SELMODRAFT_187582 [Selaginella
moellendorffii]
Length = 165
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFITP+ G+D+F+H+S++ + G +L +G+ V + +++ +G+
Sbjct: 10 GKVKWFNSAKGFGFITPDD---GGEDLFVHQSSIHADGFRSLKDGEAVEFTIDRSE-DGR 65
Query: 65 YSAENLK 71
A ++
Sbjct: 66 TKALDVT 72
>gi|160937355|ref|ZP_02084716.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
BAA-613]
gi|158439424|gb|EDP17174.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
BAA-613]
Length = 72
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFIT + E+G D+F+H S +AS G +L EGQ VT+D +
Sbjct: 6 MNKGTVKWFNSQKGYGFIT---NEENGMDIFVHFSGIASNGFKSLEEGQAVTFDITNSPR 62
Query: 62 NGKYSAENL 70
A N+
Sbjct: 63 G--LQAVNV 69
>gi|119385862|ref|YP_916917.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119376457|gb|ABL71221.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI PE DVF+H SA+ AG+ +L +GQ + YD + D
Sbjct: 1 MANGTVKWFNSNKGFGFIAPET---GSKDVFIHISALERAGIHHLNDGQAIAYDI-ERDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|228991370|ref|ZP_04151325.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
gi|228997469|ref|ZP_04157086.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|229008676|ref|ZP_04166076.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
gi|228752529|gb|EEM02157.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
gi|228762265|gb|EEM11194.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|228768300|gb|EEM16908.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V+++ + +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVED----GSDVFVHFSAITGEGFKSLDEGQEVSFEVEEGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|23336360|ref|ZP_00121581.1| COG1278: Cold shock proteins [Bifidobacterium longum DJO10A]
gi|23464635|ref|NP_695238.1| cold shock protein [Bifidobacterium longum NCC2705]
gi|189438870|ref|YP_001953951.1| cold shock protein [Bifidobacterium longum DJO10A]
gi|227546733|ref|ZP_03976782.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239620709|ref|ZP_04663740.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|296454603|ref|YP_003661746.1| putative cold-shock DNA-binding domain-containing protein
[Bifidobacterium longum subsp. longum JDM301]
gi|317481709|ref|ZP_07940741.1| cold-shock' DNA-binding domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|322689671|ref|YP_004209405.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
gi|322691632|ref|YP_004221202.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|23325192|gb|AAN23874.1| cold shock protein [Bifidobacterium longum NCC2705]
gi|32700058|gb|AAP86682.1| cold shock protein B [Bifidobacterium longum subsp. infantis]
gi|189427305|gb|ACD97453.1| Cold shock protein [Bifidobacterium longum DJO10A]
gi|227212695|gb|EEI80576.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239516285|gb|EEQ56152.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|291516230|emb|CBK69846.1| cold-shock DNA-binding protein family [Bifidobacterium longum
subsp. longum F8]
gi|296184034|gb|ADH00916.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
longum subsp. longum JDM301]
gi|316916823|gb|EFV38213.1| cold-shock' DNA-binding domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456488|dbj|BAJ67110.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|320461007|dbj|BAJ71627.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
Length = 129
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ KGYGFIT E G DVFL A+ G+ L +G V Y V
Sbjct: 1 MPTGRVRWFDAAKGYGFITSE----EGKDVFLPAQAL-PTGVTTLRKGAKVEYSVVDGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ + +
Sbjct: 56 G--PQAMDVRLIASAPS 70
>gi|320009321|gb|ADW04171.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 127
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GADVFVHSSVL-PAGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVVILDPTPS 70
>gi|322420109|ref|YP_004199332.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320126496|gb|ADW14056.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI + G+DVF+H SA+ G +L EG+ V++D
Sbjct: 1 MAQGKVKWFNDAKGFGFIEQDN----GEDVFVHFSAITGEGFKSLAEGESVSFDVTNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 57 G--LQAANVKKI 66
>gi|221134864|ref|ZP_03561167.1| cold-shock DNA-binding domain-containing protein [Glaciecola sp.
HTCC2999]
Length = 74
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE +D+F H S + G L GQ V YD VQ
Sbjct: 1 MAIGKVKWFNNTKGFGFIVPED---GNEDIFAHYSTIKMDGYRALKAGQSVHYDMVQGPK 57
Query: 62 NGKYSAENLKL 72
AEN+ +
Sbjct: 58 G--LHAENISI 66
>gi|231915|sp|Q01761|CSP7_STRCL RecName: Full=Cold shock-like protein 7.0
gi|46789|emb|CAA48316.1| 7 kDa cold shock like protein [Streptomyces clavuligerus ATCC
27064]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q+V +D +
Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE- 56
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 57 --GPQAENVSP 65
>gi|330447209|ref|ZP_08310859.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491400|dbj|GAA05356.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 71
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q
Sbjct: 7 TGSVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQKG- 62
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 63 -LQAANVVAL 71
>gi|295426499|ref|ZP_06819149.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664]
gi|295063867|gb|EFG54825.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N D+G+GFIT G DVF+H S++ + G +L EGQ V+YD Q D
Sbjct: 1 MQNGTVKWFNADRGFGFIT----GSDGKDVFVHFSSIKTNGFKSLEEGQKVSYDVEQEDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|225872220|ref|YP_002753675.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
gi|225791808|gb|ACO31898.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ + G+DVF+H +A+ + G +L EGQ V +D V+
Sbjct: 1 MEQGTVKWFNDAKGFGFLSR----QGGEDVFVHYTAIKTNGFRSLQEGQAVQFDVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ A+N++++
Sbjct: 57 G--WQADNVQVL 66
>gi|15804102|ref|NP_290141.1| major cold shock protein [Escherichia coli O157:H7 EDL933]
gi|15833695|ref|NP_312468.1| major cold shock protein [Escherichia coli O157:H7 str. Sakai]
gi|16131427|ref|NP_418012.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia
coli str. K-12 substr. MG1655]
gi|16762659|ref|NP_458276.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|24114823|ref|NP_709333.1| major cold shock protein [Shigella flexneri 2a str. 301]
gi|26250199|ref|NP_756239.1| major cold shock protein [Escherichia coli CFT073]
gi|29144146|ref|NP_807488.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|30065165|ref|NP_839336.1| major cold shock protein [Shigella flexneri 2a str. 2457T]
gi|56415543|ref|YP_152618.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62182151|ref|YP_218568.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|74314190|ref|YP_312609.1| major cold shock protein [Shigella sonnei Ss046]
gi|82545921|ref|YP_409868.1| major cold shock protein [Shigella boydii Sb227]
gi|82779380|ref|YP_405729.1| major cold shock protein [Shigella dysenteriae Sd197]
gi|89110458|ref|AP_004238.1| major cold shock protein [Escherichia coli str. K-12 substr.
W3110]
gi|91213070|ref|YP_543056.1| major cold shock protein [Escherichia coli UTI89]
gi|110643804|ref|YP_671534.1| major cold shock protein [Escherichia coli 536]
gi|110807352|ref|YP_690872.1| major cold shock protein [Shigella flexneri 5 str. 8401]
gi|152972426|ref|YP_001337572.1| major cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|157149172|ref|YP_001456492.1| major cold shock protein [Citrobacter koseri ATCC BAA-895]
gi|157155319|ref|YP_001465032.1| major cold shock protein [Escherichia coli E24377A]
gi|157163031|ref|YP_001460349.1| major cold shock protein [Escherichia coli HS]
gi|161616716|ref|YP_001590682.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168232491|ref|ZP_02657549.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235252|ref|ZP_02660310.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|170018215|ref|YP_001723169.1| major cold shock protein [Escherichia coli ATCC 8739]
gi|170083064|ref|YP_001732384.1| major cold shock protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170683736|ref|YP_001745842.1| major cold shock protein [Escherichia coli SMS-3-5]
gi|170766842|ref|ZP_02901295.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
gi|187730606|ref|YP_001882251.1| major cold shock protein [Shigella boydii CDC 3083-94]
gi|187775668|ref|ZP_02797489.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|188024513|ref|ZP_02771920.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|188493329|ref|ZP_03000599.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189010109|ref|ZP_02804714.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|189401797|ref|ZP_02778383.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|189402745|ref|ZP_02790978.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|189403738|ref|ZP_02784655.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|189404722|ref|ZP_02810435.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|189405473|ref|ZP_02822401.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|191165334|ref|ZP_03027177.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|191170525|ref|ZP_03032078.1| cold shock DNA-binding protein [Escherichia coli F11]
gi|193061815|ref|ZP_03042912.1| cold shock DNA-binding protein [Escherichia coli E22]
gi|193068536|ref|ZP_03049498.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194427483|ref|ZP_03060032.1| cold shock DNA-binding protein [Escherichia coli B171]
gi|194431091|ref|ZP_03063384.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
gi|194435705|ref|ZP_03067808.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|194443289|ref|YP_002042899.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194450219|ref|YP_002047680.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194469960|ref|ZP_03075944.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736943|ref|YP_002116583.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195935087|ref|ZP_03080469.1| major cold shock protein [Escherichia coli O157:H7 str. EC4024]
gi|197249244|ref|YP_002148580.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197262466|ref|ZP_03162540.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197364470|ref|YP_002144107.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198241852|ref|YP_002217610.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200386615|ref|ZP_03213227.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928494|ref|ZP_03219693.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205354743|ref|YP_002228544.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205356895|ref|ZP_02342874.2| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205357597|ref|ZP_02571979.2| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205359051|ref|ZP_02666750.2| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205359542|ref|ZP_02830526.2| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205360333|ref|ZP_02682580.2| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206575782|ref|YP_002236070.1| cold shock-like protein CspA [Klebsiella pneumoniae 342]
gi|207858886|ref|YP_002245537.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|208807153|ref|ZP_03249490.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208812180|ref|ZP_03253509.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208821921|ref|ZP_03262241.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209400365|ref|YP_002273042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209921021|ref|YP_002295105.1| major cold shock protein [Escherichia coli SE11]
gi|213022040|ref|ZP_03336487.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213163585|ref|ZP_03349295.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213422161|ref|ZP_03355227.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213428098|ref|ZP_03360848.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582746|ref|ZP_03364572.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213607995|ref|ZP_03368821.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213650792|ref|ZP_03380845.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852850|ref|ZP_03382382.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|215488841|ref|YP_002331272.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69]
gi|217326515|ref|ZP_03442599.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218550842|ref|YP_002384633.1| major cold shock protein [Escherichia fergusonii ATCC 35469]
gi|218556117|ref|YP_002389030.1| major cold shock protein [Escherichia coli IAI1]
gi|218560633|ref|YP_002393546.1| major cold shock protein [Escherichia coli S88]
gi|218691847|ref|YP_002400059.1| major cold shock protein [Escherichia coli ED1a]
gi|218697273|ref|YP_002404940.1| major cold shock protein [Escherichia coli 55989]
gi|218702321|ref|YP_002409950.1| major cold shock protein [Escherichia coli IAI39]
gi|218707191|ref|YP_002414710.1| major cold shock protein [Escherichia coli UMN026]
gi|224585449|ref|YP_002639248.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|227883723|ref|ZP_04001528.1| major cold shock protein [Escherichia coli 83972]
gi|237703327|ref|ZP_04533808.1| major cold shock protein [Escherichia sp. 3_2_53FAA]
gi|237728871|ref|ZP_04559352.1| major cold shock protein [Citrobacter sp. 30_2]
gi|238897019|ref|YP_002921765.1| major cold shock protein [Klebsiella pneumoniae NTUH-K2044]
gi|238902644|ref|YP_002928440.1| major cold shock protein [Escherichia coli BW2952]
gi|238910323|ref|ZP_04654160.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|253771610|ref|YP_003034441.1| major cold shock protein [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254038740|ref|ZP_04872796.1| major cold shock protein [Escherichia sp. 1_1_43]
gi|254163479|ref|YP_003046587.1| major cold shock protein [Escherichia coli B str. REL606]
gi|254795513|ref|YP_003080350.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359]
gi|256020905|ref|ZP_05434770.1| major cold shock protein [Shigella sp. D9]
gi|256025717|ref|ZP_05439582.1| major cold shock protein [Escherichia sp. 4_1_40B]
gi|260846729|ref|YP_003224507.1| major cold shock protein CspA [Escherichia coli O103:H2 str.
12009]
gi|260858048|ref|YP_003231939.1| major cold shock protein CspA [Escherichia coli O26:H11 str.
11368]
gi|260870287|ref|YP_003236689.1| major cold shock protein CspA [Escherichia coli O111:H- str.
11128]
gi|261224875|ref|ZP_05939156.1| major cold shock protein [Escherichia coli O157:H7 str. FRIK2000]
gi|261254226|ref|ZP_05946759.1| major cold shock protein CspA [Escherichia coli O157:H7 str.
FRIK966]
gi|283835935|ref|ZP_06355676.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
gi|288933068|ref|YP_003437127.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|289805377|ref|ZP_06536006.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289828312|ref|ZP_06546237.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|290511862|ref|ZP_06551230.1| cold shock protein cspA [Klebsiella sp. 1_1_55]
gi|291284933|ref|YP_003501751.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615]
gi|293407179|ref|ZP_06651103.1| cold shock protein CspB [Escherichia coli FVEC1412]
gi|293412991|ref|ZP_06655659.1| cold shock protein cspA [Escherichia coli B354]
gi|293417005|ref|ZP_06659642.1| cold shock protein cspA [Escherichia coli B185]
gi|293453866|ref|ZP_06664285.1| cold shock protein cspA [Escherichia coli B088]
gi|298382928|ref|ZP_06992523.1| cold shock protein CspB [Escherichia coli FVEC1302]
gi|300815217|ref|ZP_07095442.1| transcriptional repressor activity CueR [Escherichia coli MS
107-1]
gi|300822041|ref|ZP_07102184.1| transcriptional repressor activity CueR [Escherichia coli MS
119-7]
gi|300898732|ref|ZP_07117043.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300902747|ref|ZP_07120703.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300920437|ref|ZP_07136871.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300925632|ref|ZP_07141498.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|300928228|ref|ZP_07143767.1| transcriptional repressor activity CueR [Escherichia coli MS
187-1]
gi|300937162|ref|ZP_07152015.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|300950904|ref|ZP_07164783.1| transcriptional repressor activity CueR [Escherichia coli MS
116-1]
gi|300955049|ref|ZP_07167457.1| transcriptional repressor activity CueR [Escherichia coli MS
175-1]
gi|300971382|ref|ZP_07171451.1| transcriptional repressor activity CueR [Escherichia coli MS
45-1]
gi|300976956|ref|ZP_07173691.1| transcriptional repressor activity CueR [Escherichia coli MS
200-1]
gi|301026237|ref|ZP_07189700.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|301028176|ref|ZP_07191447.1| transcriptional repressor activity CueR [Escherichia coli MS
196-1]
gi|301047090|ref|ZP_07194190.1| transcriptional repressor activity CueR [Escherichia coli MS
185-1]
gi|301304609|ref|ZP_07210718.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|301646011|ref|ZP_07245917.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|306816090|ref|ZP_07450228.1| major cold shock protein [Escherichia coli NC101]
gi|307140246|ref|ZP_07499602.1| major cold shock protein [Escherichia coli H736]
gi|307314309|ref|ZP_07593916.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|309787759|ref|ZP_07682370.1| cold shock-like protein cspG [Shigella dysenteriae 1617]
gi|309796198|ref|ZP_07690609.1| transcriptional repressor activity CueR [Escherichia coli MS
145-7]
gi|312968101|ref|ZP_07782312.1| cold shock-like protein cspG [Escherichia coli 2362-75]
gi|312972169|ref|ZP_07786343.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|329999877|ref|ZP_08303546.1| cold shock protein [Klebsiella sp. MS 92-3]
gi|331644267|ref|ZP_08345396.1| conserved domain protein [Escherichia coli H736]
gi|331649387|ref|ZP_08350473.1| conserved domain protein [Escherichia coli M605]
gi|331655193|ref|ZP_08356192.1| conserved domain protein [Escherichia coli M718]
gi|331659872|ref|ZP_08360810.1| conserved domain protein [Escherichia coli TA206]
gi|331665179|ref|ZP_08366080.1| conserved domain protein [Escherichia coli TA143]
gi|331670390|ref|ZP_08371229.1| conserved domain protein [Escherichia coli TA271]
gi|331675046|ref|ZP_08375803.1| conserved domain protein [Escherichia coli TA280]
gi|331679637|ref|ZP_08380307.1| conserved domain protein [Escherichia coli H591]
gi|331685219|ref|ZP_08385805.1| conserved domain protein [Escherichia coli H299]
gi|332282124|ref|ZP_08394537.1| major cold shock protein [Shigella sp. D9]
gi|76364240|sp|P0A9X9|CSPA_ECOLI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|76364241|sp|P0A9Y5|CSPA_SALEN RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|76364242|sp|P0A9Y2|CSPA_SALTY RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|76364243|sp|P0A9Y4|CSPA_SHIFL RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|85687548|sp|P0A9Y1|CSPA_ECO57 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|85687549|sp|P0A9Y0|CSPA_ECOL6 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|85687550|sp|P0A9Y3|CSPA_SALTI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
gi|25296126|pir||AG0981 cold shock protein [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|306991504|pdb|2L15|A Chain A, Solution Structure Of Cold Shock Protein Cspa Using
Combined Nmr And Cs-Rosetta Method
gi|12518291|gb|AAG58705.1|AE005582_8 cold shock protein 7.4, transcriptional activator of hns
[Escherichia coli O157:H7 str. EDL933]
gi|26110628|gb|AAN82813.1|AE016768_231 Cold shock protein cspA [Escherichia coli CFT073]
gi|145633|gb|AAA23617.1| cold shock protein (cspA) [Escherichia coli]
gi|466694|gb|AAB18533.1| cold regulated [Escherichia coli str. K-12 substr. MG1655]
gi|1789979|gb|AAC76580.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia
coli str. K-12 substr. MG1655]
gi|2353338|gb|AAB69447.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Enteritidis]
gi|2970683|gb|AAC06036.1| cold shock protein A [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|13363915|dbj|BAB37864.1| cold shock protein 7.4 [Escherichia coli O157:H7 str. Sakai]
gi|16422214|gb|AAL22509.1| major cold shock protein 7.4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16504965|emb|CAD07979.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi]
gi|24054054|gb|AAN45040.1| cold shock protein 7.4, transcriptional activator of hns
[Shigella flexneri 2a str. 301]
gi|29139783|gb|AAO71348.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|30043427|gb|AAP19147.1| cold shock protein 7.4, transcriptional activator of hns
[Shigella flexneri 2a str. 2457T]
gi|56129800|gb|AAV79306.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62129784|gb|AAX67487.1| Cold shock protein cspA (CSP-A) [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|73857667|gb|AAZ90374.1| cold shock protein 7.4, transcriptional activator of hns
[Shigella sonnei Ss046]
gi|81243528|gb|ABB64238.1| cold shock protein 7.4 [Shigella dysenteriae Sd197]
gi|81247332|gb|ABB68040.1| cold shock protein 7.4 [Shigella boydii Sb227]
gi|85676489|dbj|BAE77739.1| major cold shock protein [Escherichia coli str. K12 substr.
W3110]
gi|91074644|gb|ABE09525.1| cold shock protein 7.4, transcriptional activator of hns
[Escherichia coli UTI89]
gi|110345396|gb|ABG71633.1| cold shock protein CspA [Escherichia coli 536]
gi|110616900|gb|ABF05567.1| Cold shock protein cspA [Shigella flexneri 5 str. 8401]
gi|150957275|gb|ABR79305.1| cold shock protein 7.4, transcriptional activator of hns
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|157068711|gb|ABV07966.1| cold shock DNA-binding protein [Escherichia coli HS]
gi|157077349|gb|ABV17057.1| cold shock DNA-binding protein [Escherichia coli E24377A]
gi|157086377|gb|ABV16055.1| hypothetical protein CKO_05012 [Citrobacter koseri ATCC BAA-895]
gi|161366080|gb|ABX69848.1| hypothetical protein SPAB_04535 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|169753143|gb|ACA75842.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169890899|gb|ACB04606.1| major cold shock protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170124280|gb|EDS93211.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
gi|170521454|gb|ACB19632.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5]
gi|187427598|gb|ACD06872.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
gi|187771551|gb|EDU35395.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|188018410|gb|EDU56532.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|188488528|gb|EDU63631.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189002424|gb|EDU71410.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|189358854|gb|EDU77273.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|189364591|gb|EDU83010.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|189369849|gb|EDU88265.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|189374634|gb|EDU93050.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|189379895|gb|EDU98311.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|190904736|gb|EDV64442.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|190909333|gb|EDV68919.1| cold shock DNA-binding protein [Escherichia coli F11]
gi|192932605|gb|EDV85202.1| cold shock DNA-binding protein [Escherichia coli E22]
gi|192958187|gb|EDV88628.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194401952|gb|ACF62174.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194408523|gb|ACF68742.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194414523|gb|EDX30796.1| cold shock DNA-binding protein [Escherichia coli B171]
gi|194420546|gb|EDX36622.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
gi|194425248|gb|EDX41232.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|194456324|gb|EDX45163.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194712445|gb|ACF91666.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197095947|emb|CAR61529.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197212947|gb|ACH50344.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197240721|gb|EDY23341.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197291255|gb|EDY30607.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197936368|gb|ACH73701.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603713|gb|EDZ02258.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321927|gb|EDZ07125.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205274524|emb|CAR39563.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205325852|gb|EDZ13691.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205330662|gb|EDZ17426.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333305|gb|EDZ20069.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338837|gb|EDZ25601.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205344312|gb|EDZ31076.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350328|gb|EDZ36959.1| cold shock DNA-binding protein [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206564840|gb|ACI06616.1| cold shock-like protein CspA [Klebsiella pneumoniae 342]
gi|206710689|emb|CAR35049.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|208726954|gb|EDZ76555.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208733457|gb|EDZ82144.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208742044|gb|EDZ89726.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209161765|gb|ACI39198.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209755208|gb|ACI75916.1| cold shock protein 7.4 [Escherichia coli]
gi|209755210|gb|ACI75917.1| cold shock protein 7.4 [Escherichia coli]
gi|209755212|gb|ACI75918.1| cold shock protein 7.4 [Escherichia coli]
gi|209755214|gb|ACI75919.1| cold shock protein 7.4 [Escherichia coli]
gi|209755216|gb|ACI75920.1| cold shock protein 7.4 [Escherichia coli]
gi|209914280|dbj|BAG79354.1| cold shock protein [Escherichia coli SE11]
gi|215266913|emb|CAS11356.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69]
gi|217322736|gb|EEC31160.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218354005|emb|CAV00495.1| major cold shock protein [Escherichia coli 55989]
gi|218358383|emb|CAQ91030.1| major cold shock protein [Escherichia fergusonii ATCC 35469]
gi|218362885|emb|CAR00519.1| major cold shock protein [Escherichia coli IAI1]
gi|218367402|emb|CAR05184.1| major cold shock protein [Escherichia coli S88]
gi|218372307|emb|CAR20172.1| major cold shock protein [Escherichia coli IAI39]
gi|218429411|emb|CAR10372.2| major cold shock protein [Escherichia coli ED1a]
gi|218434288|emb|CAR15210.1| major cold shock protein [Escherichia coli UMN026]
gi|222035271|emb|CAP78016.1| Cold shock protein cspA [Escherichia coli LF82]
gi|224469977|gb|ACN47807.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|226839246|gb|EEH71269.1| major cold shock protein [Escherichia sp. 1_1_43]
gi|226902591|gb|EEH88850.1| major cold shock protein [Escherichia sp. 3_2_53FAA]
gi|226909493|gb|EEH95411.1| major cold shock protein [Citrobacter sp. 30_2]
gi|227839303|gb|EEJ49769.1| major cold shock protein [Escherichia coli 83972]
gi|238549347|dbj|BAH65698.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|238861704|gb|ACR63702.1| major cold shock protein [Escherichia coli BW2952]
gi|242379073|emb|CAQ33874.1| CspA transcriptional activator [Escherichia coli BL21(DE3)]
gi|253322654|gb|ACT27256.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975380|gb|ACT41051.1| major cold shock protein [Escherichia coli B str. REL606]
gi|253979536|gb|ACT45206.1| major cold shock protein [Escherichia coli BL21(DE3)]
gi|254594913|gb|ACT74274.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359]
gi|257756697|dbj|BAI28199.1| major cold shock protein CspA [Escherichia coli O26:H11 str.
11368]
gi|257761876|dbj|BAI33373.1| major cold shock protein CspA [Escherichia coli O103:H2 str.
12009]
gi|257766643|dbj|BAI38138.1| major cold shock protein CspA [Escherichia coli O111:H- str.
11128]
gi|260447428|gb|ACX37850.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|261248799|emb|CBG26652.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267995899|gb|ACY90784.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|281180601|dbj|BAI56931.1| cold shock protein [Escherichia coli SE15]
gi|281602915|gb|ADA75899.1| Cold-shock DNA-binding protein family [Shigella flexneri 2002017]
gi|284923590|emb|CBG36686.1| cold shock protein [Escherichia coli 042]
gi|288887797|gb|ADC56115.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|289775652|gb|EFD83652.1| cold shock protein cspA [Klebsiella sp. 1_1_55]
gi|290764806|gb|ADD58767.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615]
gi|291068112|gb|EFE06221.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
gi|291321992|gb|EFE61423.1| cold shock protein cspA [Escherichia coli B088]
gi|291425990|gb|EFE99024.1| cold shock protein CspB [Escherichia coli FVEC1412]
gi|291431581|gb|EFF04566.1| cold shock protein cspA [Escherichia coli B185]
gi|291468638|gb|EFF11131.1| cold shock protein cspA [Escherichia coli B354]
gi|294490956|gb|ADE89712.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
gi|298276764|gb|EFI18282.1| cold shock protein CspB [Escherichia coli FVEC1302]
gi|299878753|gb|EFI86964.1| transcriptional repressor activity CueR [Escherichia coli MS
196-1]
gi|300300977|gb|EFJ57362.1| transcriptional repressor activity CueR [Escherichia coli MS
185-1]
gi|300308426|gb|EFJ62946.1| transcriptional repressor activity CueR [Escherichia coli MS
200-1]
gi|300318019|gb|EFJ67803.1| transcriptional repressor activity CueR [Escherichia coli MS
175-1]
gi|300357611|gb|EFJ73481.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300395621|gb|EFJ79159.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|300405208|gb|EFJ88746.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300411306|gb|EFJ94844.1| transcriptional repressor activity CueR [Escherichia coli MS
45-1]
gi|300412570|gb|EFJ95880.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300418272|gb|EFK01583.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|300449807|gb|EFK13427.1| transcriptional repressor activity CueR [Escherichia coli MS
116-1]
gi|300457748|gb|EFK21241.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|300463773|gb|EFK27266.1| transcriptional repressor activity CueR [Escherichia coli MS
187-1]
gi|300525404|gb|EFK46473.1| transcriptional repressor activity CueR [Escherichia coli MS
119-7]
gi|300532109|gb|EFK53171.1| transcriptional repressor activity CueR [Escherichia coli MS
107-1]
gi|300840087|gb|EFK67847.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|301075763|gb|EFK90569.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|305850486|gb|EFM50943.1| major cold shock protein [Escherichia coli NC101]
gi|306906024|gb|EFN36544.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|307555662|gb|ADN48437.1| cold shock protein CspA [Escherichia coli ABU 83972]
gi|307628638|gb|ADN72942.1| major cold shock protein [Escherichia coli UM146]
gi|308120259|gb|EFO57521.1| transcriptional repressor activity CueR [Escherichia coli MS
145-7]
gi|308924509|gb|EFP70005.1| cold shock-like protein cspG [Shigella dysenteriae 1617]
gi|310334546|gb|EFQ00751.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|312287360|gb|EFR15269.1| cold shock-like protein cspG [Escherichia coli 2362-75]
gi|312914675|dbj|BAJ38649.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|312948122|gb|ADR28949.1| major cold shock protein [Escherichia coli O83:H1 str. NRG 857C]
gi|313647586|gb|EFS12036.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
gi|315062841|gb|ADT77168.1| major cold shock protein [Escherichia coli W]
gi|315138132|dbj|BAJ45291.1| cold shock protein cspA [Escherichia coli DH1]
gi|315254086|gb|EFU34054.1| transcriptional repressor activity CueR [Escherichia coli MS
85-1]
gi|315285298|gb|EFU44743.1| transcriptional repressor activity CueR [Escherichia coli MS
110-3]
gi|315294135|gb|EFU53487.1| transcriptional repressor activity CueR [Escherichia coli MS
153-1]
gi|315300090|gb|EFU59328.1| transcriptional repressor activity CueR [Escherichia coli MS
16-3]
gi|315618408|gb|EFU98995.1| cold shock-like protein cspG [Escherichia coli 3431]
gi|320088070|emb|CBY97832.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|320177195|gb|EFW52205.1| Cold shock protein CspA [Shigella dysenteriae CDC 74-1112]
gi|320182073|gb|EFW56978.1| Cold shock protein CspA [Shigella boydii ATCC 9905]
gi|320187079|gb|EFW61787.1| Cold shock protein CspA [Shigella flexneri CDC 796-83]
gi|320191387|gb|EFW66037.1| Cold shock protein CspA [Escherichia coli O157:H7 str. EC1212]
gi|320193931|gb|EFW68564.1| Cold shock protein CspA [Escherichia coli WV_060327]
gi|320201422|gb|EFW76003.1| Cold shock protein CspA [Escherichia coli EC4100B]
gi|320639877|gb|EFX09471.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
G5101]
gi|320645040|gb|EFX14064.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str.
493-89]
gi|320650307|gb|EFX18790.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. H
2687]
gi|320655882|gb|EFX23805.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661662|gb|EFX29077.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. USDA
5905]
gi|320666686|gb|EFX33669.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
LSU-61]
gi|321226705|gb|EFX51755.1| Cold shock protein CspA [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322613962|gb|EFY10898.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620331|gb|EFY17199.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625336|gb|EFY22163.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629997|gb|EFY26770.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634187|gb|EFY30922.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635912|gb|EFY32621.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643170|gb|EFY39744.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644609|gb|EFY41145.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322650851|gb|EFY47243.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652985|gb|EFY49320.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659948|gb|EFY56188.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663281|gb|EFY59485.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668767|gb|EFY64920.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674430|gb|EFY70523.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678362|gb|EFY74423.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680868|gb|EFY76902.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687196|gb|EFY83169.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716639|gb|EFZ08210.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323132010|gb|ADX19440.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323153885|gb|EFZ40119.1| cold shock-like protein cspG [Escherichia coli EPECa14]
gi|323166951|gb|EFZ52690.1| cold shock-like protein cspG [Shigella sonnei 53G]
gi|323174215|gb|EFZ59843.1| cold shock-like protein cspG [Escherichia coli LT-68]
gi|323182712|gb|EFZ68114.1| cold shock-like protein cspG [Escherichia coli 1357]
gi|323189283|gb|EFZ74566.1| cold shock-like protein cspG [Escherichia coli RN587/1]
gi|323192155|gb|EFZ77388.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200659|gb|EFZ85733.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201369|gb|EFZ86435.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206769|gb|EFZ91723.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211801|gb|EFZ96633.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216160|gb|EGA00888.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323220383|gb|EGA04837.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226240|gb|EGA10455.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228360|gb|EGA12491.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234181|gb|EGA18269.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237166|gb|EGA21233.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244685|gb|EGA28689.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249166|gb|EGA33084.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250715|gb|EGA34595.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257590|gb|EGA41277.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262299|gb|EGA45860.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266146|gb|EGA49637.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268781|gb|EGA52239.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|323376568|gb|ADX48836.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323934742|gb|EGB31129.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323939545|gb|EGB35753.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323944546|gb|EGB40617.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323949800|gb|EGB45684.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|323954899|gb|EGB50679.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|323959439|gb|EGB55098.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323966026|gb|EGB61467.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|323971361|gb|EGB66602.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|323975031|gb|EGB70140.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
gi|324007334|gb|EGB76553.1| transcriptional repressor activity CueR [Escherichia coli MS
57-2]
gi|324014208|gb|EGB83427.1| transcriptional repressor activity CueR [Escherichia coli MS
60-1]
gi|324021129|gb|EGB90348.1| transcriptional repressor activity CueR [Escherichia coli MS
117-3]
gi|324111895|gb|EGC05875.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|324116564|gb|EGC10481.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|325499116|gb|EGC96975.1| major cold shock protein [Escherichia fergusonii ECD227]
gi|326337439|gb|EGD61274.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1044]
gi|326339964|gb|EGD63771.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1125]
gi|326625395|gb|EGE31740.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326629882|gb|EGE36225.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|327251207|gb|EGE62900.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
gi|328538186|gb|EGF64339.1| cold shock protein [Klebsiella sp. MS 92-3]
gi|330909619|gb|EGH38133.1| cold shock protein CspA [Escherichia coli AA86]
gi|331036561|gb|EGI08787.1| conserved domain protein [Escherichia coli H736]
gi|331041885|gb|EGI14029.1| conserved domain protein [Escherichia coli M605]
gi|331047208|gb|EGI19286.1| conserved domain protein [Escherichia coli M718]
gi|331053087|gb|EGI25120.1| conserved domain protein [Escherichia coli TA206]
gi|331057689|gb|EGI29675.1| conserved domain protein [Escherichia coli TA143]
gi|331062452|gb|EGI34372.1| conserved domain protein [Escherichia coli TA271]
gi|331067955|gb|EGI39353.1| conserved domain protein [Escherichia coli TA280]
gi|331072809|gb|EGI44134.1| conserved domain protein [Escherichia coli H591]
gi|331077590|gb|EGI48802.1| conserved domain protein [Escherichia coli H299]
gi|332085082|gb|EGI90262.1| cold shock-like protein cspG [Shigella boydii 5216-82]
gi|332085822|gb|EGI90986.1| cold shock-like protein cspG [Shigella dysenteriae 155-74]
gi|332089367|gb|EGI94471.1| cold shock-like protein cspG [Shigella boydii 3594-74]
gi|332104476|gb|EGJ07822.1| major cold shock protein [Shigella sp. D9]
gi|332345523|gb|AEE58857.1| cold shock-like protein CspG [Escherichia coli UMNK88]
gi|332750008|gb|EGJ80420.1| cold shock-like protein cspG [Shigella flexneri K-671]
gi|332750165|gb|EGJ80576.1| cold shock-like protein cspG [Shigella flexneri 4343-70]
gi|332751185|gb|EGJ81588.1| cold shock-like protein cspG [Shigella flexneri 2747-71]
gi|332763435|gb|EGJ93674.1| cspA transcriptional activator [Shigella flexneri 2930-71]
gi|332990500|gb|AEF09483.1| major cold shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|332996874|gb|EGK16493.1| cold shock-like protein cspG [Shigella flexneri K-272]
gi|332997304|gb|EGK16920.1| cold shock-like protein cspG [Shigella flexneri K-218]
gi|333012564|gb|EGK31945.1| cold shock-like protein cspG [Shigella flexneri K-304]
gi|333013441|gb|EGK32813.1| cold shock-like protein cspG [Shigella flexneri K-227]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENLK 71
+A N+
Sbjct: 62 -PAAGNVT 68
>gi|262273606|ref|ZP_06051420.1| cold shock protein CspA [Grimontia hollisae CIP 101886]
gi|262273607|ref|ZP_06051421.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
gi|262222584|gb|EEY73895.1| cold shock protein CspA [Grimontia hollisae CIP 101886]
gi|262222585|gb|EEY73896.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDN---GGADVFVHFRAIASDGFKTLAEGQKVSFDVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --PQAANVVAL 70
>gi|257067904|ref|YP_003154159.1| cold-shock DNA-binding protein family [Brachybacterium faecium
DSM 4810]
gi|256558722|gb|ACU84569.1| cold-shock DNA-binding protein family [Brachybacterium faecium
DSM 4810]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + W+N DKGYGFI PE DVF H SA+ +G +L E Q V +D Q
Sbjct: 1 MATGIVTWFNSDKGYGFIAPED---GSADVFAHFSAIVGSGRRDLEENQRVEFDVEQGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 58 G--LQATNIRGI 67
>gi|153837326|ref|ZP_01989993.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810]
gi|260365334|ref|ZP_05777885.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030]
gi|260876950|ref|ZP_05889305.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034]
gi|260897909|ref|ZP_05906405.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466]
gi|260901418|ref|ZP_05909813.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
gi|149749357|gb|EDM60130.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810]
gi|308085479|gb|EFO35174.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466]
gi|308093637|gb|EFO43332.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034]
gi|308107511|gb|EFO45051.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
gi|308112690|gb|EFO50230.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030]
gi|328473238|gb|EGF44086.1| cold shock-like protein CspD [Vibrio parahaemolyticus 10329]
Length = 72
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEIEKGPK 57
Query: 62 NGKYSAENLKLVPK 75
A ++ +
Sbjct: 58 G--CHASSVVPIEA 69
>gi|242074456|ref|XP_002447164.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
gi|241938347|gb|EES11492.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
Length = 215
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP+ ++ +D+F+H+S++ G +L EG+ V Y +G
Sbjct: 7 TGTVKWFNVDKGFGFITPDDAS---EDLFVHQSSIKCDGYRSLKEGEAVEYTVGSGQ-DG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAMDVT 70
>gi|261339213|ref|ZP_05967071.1| hypothetical protein ENTCAN_05441 [Enterobacter cancerogenus ATCC
35316]
gi|288319062|gb|EFC58000.1| cold shock domain protein CspD [Enterobacter cancerogenus ATCC
35316]
Length = 73
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + V +
Sbjct: 58 GN--HASLIVPVEAEA 71
>gi|146282648|ref|YP_001172801.1| cold-shock protein CspD [Pseudomonas stutzeri A1501]
gi|145570853|gb|ABP79959.1| cold-shock protein CspD [Pseudomonas stutzeri A1501]
Length = 93
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q
Sbjct: 7 MLSGKVKWFNNAKGYGFIVADG---GDEDLFAHYSAIQMEGYRTLKAGQAVMFNILQGPK 63
Query: 62 NGKYSAENLKL---VPKSS 77
A +++ V +++
Sbjct: 64 G--LHATDIRPQQAVSEAT 80
>gi|94269264|ref|ZP_01291414.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
gi|93451280|gb|EAT02166.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI + SG DVF+H +A+ G +L EG V ++ V
Sbjct: 1 MAEGTVKWFNDAKGYGFIAQD----SGSDVFVHHTAIEGQGFKSLQEGARVEFEIVDGPK 56
Query: 62 NGKYSAENLKLV 73
+A N++ +
Sbjct: 57 G--PAAGNVRQL 66
>gi|90409640|ref|ZP_01217657.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|90410063|ref|ZP_01218080.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|90413803|ref|ZP_01221790.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|90325114|gb|EAS41617.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|90328993|gb|EAS45250.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|90329416|gb|EAS45673.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --LQAANVVAL 69
>gi|329851859|ref|ZP_08266540.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
gi|328839708|gb|EGF89281.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P + G+DVF+H SAV AGL L +GQ V+Y+ +
Sbjct: 1 MAEGTVKWFNSTKGFGFIQP---SSGGNDVFVHISAVQRAGLQGLADGQKVSYELQ--NE 55
Query: 62 NGKYSAENLKLV 73
GK +A ++KL+
Sbjct: 56 RGKTAAVDIKLL 67
>gi|209809400|ref|YP_002264938.1| cold shock-like protein [Aliivibrio salmonicida LFI1238]
gi|208010962|emb|CAQ81368.1| cold shock-like protein [Aliivibrio salmonicida LFI1238]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N DKG+GFIT E G DVF H SA+ S G L EGQ VT++ Q
Sbjct: 4 ATGTVKWFNEDKGFGFITQEN---GGPDVFAHFSAIQSEGFKTLKEGQAVTFEVEQGPKG 60
Query: 63 GKYS 66
+ +
Sbjct: 61 PQAA 64
>gi|163794103|ref|ZP_02188076.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
gi|159180717|gb|EDP65236.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ G DVF+H +AV +GL L EGQ + Y+ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIKPDD---GGADVFVHITAVQRSGLQGLNEGQAIMYEM-KPQR 56
Query: 62 NGKYSAENLKLV 73
NGK +AE LK +
Sbjct: 57 NGKMAAEELKPL 68
>gi|160933904|ref|ZP_02081291.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753]
gi|156866577|gb|EDO59949.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GF++ + G+DVF+H SA+ G +L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNSEKGFGFLSNDN---GGEDVFVHFSAIVGEGFKSLAEGQKVTFDTETDPK 57
Query: 62 N-GKYSAENL 70
N K A N+
Sbjct: 58 NSKKLRAVNV 67
>gi|317130282|ref|YP_004096564.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
gi|315475230|gb|ADU31833.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 1 MNMQGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIEQEGFKTLEEGQEVEFEIVEGA 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 RG--PQASNVVKL 67
>gi|313497351|gb|ADR58717.1| Cold-shock domain-containing protein [Pseudomonas putida BIRD-1]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ
Sbjct: 4 RQKGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADKVQPV 69
>gi|21222160|ref|NP_627939.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|256786753|ref|ZP_05525184.1| cold shock protein [Streptomyces lividans TK24]
gi|289770647|ref|ZP_06530025.1| cold shock protein [Streptomyces lividans TK24]
gi|5732895|gb|AAD49327.1|AF162937_1 F40 [Streptomyces coelicolor A3(2)]
gi|7211015|emb|CAB76995.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|289700846|gb|EFD68275.1| cold shock protein [Streptomyces lividans TK24]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGADVFAHYSNIATQGFRELQEGQRVNFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|148261824|ref|YP_001235951.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
cryptum JF-5]
gi|326405328|ref|YP_004285410.1| cold shock protein [Acidiphilium multivorum AIU301]
gi|146403505|gb|ABQ32032.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5]
gi|325052190|dbj|BAJ82528.1| cold shock protein [Acidiphilium multivorum AIU301]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ DVF+H SAV AGL + EGQ + ++ +
Sbjct: 1 MSTGTVKWFNATKGYGFIQPDD---GSKDVFVHISAVERAGLGRIDEGQRLEFEVRKG-R 56
Query: 62 NGKYSAENLK 71
GK SAENLK
Sbjct: 57 EGKMSAENLK 66
>gi|329941396|ref|ZP_08290675.1| cold shock protein B [Streptomyces griseoaurantiacus M045]
gi|329299927|gb|EGG43826.1| cold shock protein B [Streptomyces griseoaurantiacus M045]
Length = 127
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNGEKGFGFLSRDD----GGDVFVHSSVL-PAGVDALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+ + +
Sbjct: 56 GD--QALSVVLLEPAPS 70
>gi|295096413|emb|CBK85503.1| cold-shock DNA-binding protein family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 73
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q
Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|315498412|ref|YP_004087216.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
gi|315416424|gb|ADU13065.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P E G+DVF+H +AV AGL L +GQ ++Y+
Sbjct: 1 MAEGTVKWFNATKGFGFIQPA---EGGNDVFVHITAVQRAGLQGLADGQKLSYELQTE-- 55
Query: 62 NGKYSAENLKLV 73
GK +A NL+L+
Sbjct: 56 RGKTAAVNLQLL 67
>gi|154250399|ref|YP_001411224.1| cold-shock DNA-binding domain-containing protein
[Fervidobacterium nodosum Rt17-B1]
gi|154154335|gb|ABS61567.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
nodosum Rt17-B1]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT E G DVF+H SA+ G L EG V +D
Sbjct: 2 KGTVKWFDSSKGYGFITGEN----GQDVFVHFSAIQMDGFKTLKEGDKVEFDIQNGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+KLV
Sbjct: 57 -PQAANVKLVK 66
>gi|327480906|gb|AEA84216.1| cold-shock protein CspD [Pseudomonas stutzeri DSM 4166]
Length = 87
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q
Sbjct: 1 MLSGKVKWFNNAKGYGFIVADG---GDEDLFAHYSAIQMEGYRTLKAGQAVMFNILQGPK 57
Query: 62 NGKYSAENLKL---VPKSS 77
A +++ V +++
Sbjct: 58 G--LHATDIRPQQAVSEAT 74
>gi|304397050|ref|ZP_07378929.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|304355199|gb|EFM19567.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
Length = 74
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G G+D+F H S + G L GQ V +D +
Sbjct: 1 METGTVKWFNNSKGFGFICPVG---GGEDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|120554651|ref|YP_959002.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120324500|gb|ABM18815.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
VT8]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI E G DVF+H SA+ + G L EGQ V + Q
Sbjct: 5 KTGHVKWFNESKGFGFIAQE----GGSDVFVHYSAINANGFRTLAEGQQVQFTVTQGPKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --PQAENVTPL 69
>gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum
SCRI1043]
gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str.
'morsitans']
gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163]
gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans']
gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVTAL 69
>gi|69244300|ref|ZP_00602768.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
gi|227551568|ref|ZP_03981617.1| cold-shock protein [Enterococcus faecium TX1330]
gi|257878362|ref|ZP_05658015.1| cold-shock protein [Enterococcus faecium 1,230,933]
gi|257887333|ref|ZP_05666986.1| cold-shock protein [Enterococcus faecium 1,141,733]
gi|257889438|ref|ZP_05669091.1| cold-shock protein [Enterococcus faecium 1,231,410]
gi|257892619|ref|ZP_05672272.1| cold-shock protein [Enterococcus faecium 1,231,408]
gi|257895824|ref|ZP_05675477.1| cold-shock protein [Enterococcus faecium Com12]
gi|257898451|ref|ZP_05678104.1| cold-shock protein [Enterococcus faecium Com15]
gi|258616116|ref|ZP_05713886.1| cold shock protein CspA family protein [Enterococcus faecium DO]
gi|260559947|ref|ZP_05832126.1| cold-shock protein [Enterococcus faecium C68]
gi|293377552|ref|ZP_06623744.1| cold-shock DNA-binding domain protein [Enterococcus faecium
PC4.1]
gi|293553922|ref|ZP_06674527.1| cold-shock protein [Enterococcus faecium E1039]
gi|293560530|ref|ZP_06677020.1| cold-shock protein [Enterococcus faecium E1162]
gi|293568855|ref|ZP_06680168.1| cold-shock protein [Enterococcus faecium E1071]
gi|293572948|ref|ZP_06683895.1| cold-shock protein [Enterococcus faecium E980]
gi|294615473|ref|ZP_06695341.1| cold-shock protein [Enterococcus faecium E1636]
gi|294618750|ref|ZP_06698279.1| cold shock protein [Enterococcus faecium E1679]
gi|294621893|ref|ZP_06701048.1| cold shock protein [Enterococcus faecium U0317]
gi|314940515|ref|ZP_07847657.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|314943280|ref|ZP_07850062.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|314948444|ref|ZP_07851829.1| major cold shock protein CspA [Enterococcus faecium TX0082]
gi|314952991|ref|ZP_07855953.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|314994198|ref|ZP_07859503.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|314997118|ref|ZP_07862106.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|68196486|gb|EAN10913.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
gi|227179245|gb|EEI60217.1| cold-shock protein [Enterococcus faecium TX1330]
gi|257812590|gb|EEV41348.1| cold-shock protein [Enterococcus faecium 1,230,933]
gi|257823387|gb|EEV50319.1| cold-shock protein [Enterococcus faecium 1,141,733]
gi|257825798|gb|EEV52424.1| cold-shock protein [Enterococcus faecium 1,231,410]
gi|257828998|gb|EEV55605.1| cold-shock protein [Enterococcus faecium 1,231,408]
gi|257832389|gb|EEV58810.1| cold-shock protein [Enterococcus faecium Com12]
gi|257836363|gb|EEV61437.1| cold-shock protein [Enterococcus faecium Com15]
gi|260074171|gb|EEW62494.1| cold-shock protein [Enterococcus faecium C68]
gi|291588288|gb|EFF20123.1| cold-shock protein [Enterococcus faecium E1071]
gi|291591676|gb|EFF23317.1| cold-shock protein [Enterococcus faecium E1636]
gi|291595003|gb|EFF26351.1| cold shock protein [Enterococcus faecium E1679]
gi|291598552|gb|EFF29614.1| cold shock protein [Enterococcus faecium U0317]
gi|291601910|gb|EFF32157.1| cold-shock protein [Enterococcus faecium E1039]
gi|291605497|gb|EFF34941.1| cold-shock protein [Enterococcus faecium E1162]
gi|291606989|gb|EFF36364.1| cold-shock protein [Enterococcus faecium E980]
gi|292643809|gb|EFF61927.1| cold-shock DNA-binding domain protein [Enterococcus faecium
PC4.1]
gi|313588788|gb|EFR67633.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
gi|313591379|gb|EFR70224.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
gi|313594927|gb|EFR73772.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
gi|313598008|gb|EFR76853.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
gi|313640286|gb|EFS04867.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
gi|313645102|gb|EFS09682.1| major cold shock protein CspA [Enterococcus faecium TX0082]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ V+YD
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQGDGFKTLEEGQAVSYDVEDGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNI 63
>gi|323492820|ref|ZP_08097962.1| cold-shock DNA-binding domain-containing protein [Vibrio
brasiliensis LMG 20546]
gi|323312891|gb|EGA66013.1| cold-shock DNA-binding domain-containing protein [Vibrio
brasiliensis LMG 20546]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFITPE G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGIVKWFNEEKGFGFITPEN---GGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --PQAANV 67
>gi|313884810|ref|ZP_07818562.1| major cold shock protein CspA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619501|gb|EFR30938.1| major cold shock protein CspA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKG+GFI + DDVF+H SA+ S G L EGQ V++D
Sbjct: 1 MAEGKVKWFNADKGFGFIERD----GEDDVFVHFSAIQSEGFKTLEEGQAVSFDIEDGAR 56
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 57 G--PQAANVEKI 66
>gi|259418300|ref|ZP_05742218.1| conserved domain protein [Silicibacter sp. TrichCH4B]
gi|259345695|gb|EEW57539.1| conserved domain protein [Silicibacter sp. TrichCH4B]
Length = 68
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V Y+ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGLTGLADNQKVGYELSEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +++ +
Sbjct: 57 DGRQMAGDIRPL 68
>gi|257865337|ref|ZP_05644990.1| cold-shock protein [Enterococcus casseliflavus EC30]
gi|257871667|ref|ZP_05651320.1| cold-shock protein [Enterococcus casseliflavus EC10]
gi|325571430|ref|ZP_08146930.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
gi|257799271|gb|EEV28323.1| cold-shock protein [Enterococcus casseliflavus EC30]
gi|257805831|gb|EEV34653.1| cold-shock protein [Enterococcus casseliflavus EC10]
gi|325155906|gb|EGC68102.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
Length = 66
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|212639235|ref|YP_002315755.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
gi|212560715|gb|ACJ33770.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
Length = 81
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI + G DVF+H +A+ G L EG+ VT+D V +
Sbjct: 16 MNTGKVKWFNAEKGFGFIETD----GGTDVFVHFTAIQGTGFKTLEEGEKVTFDIVNGNR 71
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 72 G--PQAANVQK 80
>gi|254241055|ref|ZP_04934377.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192]
gi|126194433|gb|EAZ58496.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192]
Length = 90
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG +D+F H SA+ G L GQ V ++ +Q
Sbjct: 1 MLSGKVKWFNNAKGYGFILAEGR---DEDLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LHAINI 64
>gi|90409803|ref|ZP_01217820.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
gi|90329156|gb|EAS45413.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
Length = 70
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEDKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --PQAANVVAL 70
>gi|59714277|ref|YP_207052.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114]
gi|197337532|ref|YP_002158749.1| hypothetical protein VFMJ11_A1204 [Vibrio fischeri MJ11]
gi|59482525|gb|AAW88164.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114]
gi|197314784|gb|ACH64233.1| conserved domain protein [Vibrio fischeri MJ11]
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --PQAANVVAL 69
>gi|15597818|ref|NP_251312.1| cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
gi|116050609|ref|YP_790572.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14]
gi|218891217|ref|YP_002440083.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58]
gi|254235608|ref|ZP_04928931.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719]
gi|296388918|ref|ZP_06878393.1| cold-shock protein CspD [Pseudomonas aeruginosa PAb1]
gi|313107659|ref|ZP_07793842.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016]
gi|9948689|gb|AAG06010.1|AE004691_1 cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
gi|115585830|gb|ABJ11845.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14]
gi|126167539|gb|EAZ53050.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719]
gi|218771442|emb|CAW27209.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58]
gi|310880344|gb|EFQ38938.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016]
Length = 90
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG +D+F H SA+ G L GQ V ++ +Q
Sbjct: 1 MLSGKVKWFNNAKGYGFILAEGR---DEDLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LHAINI 64
>gi|3891780|pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution
Nmr Structure
Length = 69
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 5 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 60
Query: 64 KYSAENLK 71
+A N+
Sbjct: 61 -PAAGNVT 67
>gi|29830990|ref|NP_825624.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29608104|dbj|BAC72159.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 67
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|99081568|ref|YP_613722.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
TM1040]
gi|99037848|gb|ABF64460.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
Length = 68
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V Y+ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYELTEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +++ +
Sbjct: 57 DGRQMAGDIRPL 68
>gi|117927315|ref|YP_871866.1| cold-shock DNA-binding protein family protein [Acidothermus
cellulolyticus 11B]
gi|117647778|gb|ABK51880.1| cold-shock DNA-binding protein family [Acidothermus
cellulolyticus 11B]
Length = 129
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+P+KG+GF+T + G DVF+ SA+ AG+ +L G V + V++
Sbjct: 1 MPTGKVKWYDPEKGFGFLTRDD----GGDVFVRASAL-PAGVTSLKPGSRVEFGIVESKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 G--EQALSVRLLDPLPS 70
>gi|229031192|ref|ZP_04187201.1| Cold shock protein cspB [Bacillus cereus AH1271]
gi|229075433|ref|ZP_04208422.1| Cold shock protein cspB [Bacillus cereus Rock4-18]
gi|229097982|ref|ZP_04228932.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|229104067|ref|ZP_04234742.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|229117001|ref|ZP_04246383.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|228666405|gb|EEL21865.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|228679347|gb|EEL33549.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|228685419|gb|EEL39347.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|228707682|gb|EEL59866.1| Cold shock protein cspB [Bacillus cereus Rock4-18]
gi|228730119|gb|EEL81090.1| Cold shock protein cspB [Bacillus cereus AH1271]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|320155835|ref|YP_004188214.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O]
gi|319931147|gb|ADV86011.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ VTY+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSDQEEG---DIFAHYSTIQMDGYRTLKAGQQVTYEIEKGPK 57
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 58 G--CHASSVVPLE 68
>gi|222106593|ref|YP_002547384.1| cold shock protein [Agrobacterium vitis S4]
gi|221737772|gb|ACM38668.1| cold shock protein [Agrobacterium vitis S4]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++K++N DKG+GFITPEG DVF+H SA+ +AG+ L +GQ VT+D +
Sbjct: 1 MAIKGTVKFFNQDKGFGFITPEG---GAKDVFVHISALQAAGIQTLRDGQEVTFDTEADR 57
Query: 61 ANGKYSAENLK 71
A N++
Sbjct: 58 MGKGPKAVNIR 68
>gi|107102143|ref|ZP_01366061.1| hypothetical protein PaerPA_01003193 [Pseudomonas aeruginosa
PACS2]
Length = 92
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG +D+F H SA+ G L GQ V ++ +Q
Sbjct: 3 MLSGKVKWFNNAKGYGFILAEGR---DEDLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 59
Query: 62 NGKYSAENL 70
A N+
Sbjct: 60 G--LHAINI 66
>gi|78221460|ref|YP_383207.1| cold-shock DNA-binding protein family protein [Geobacter
metallireducens GS-15]
gi|78192715|gb|ABB30482.1| cold-shock DNA-binding protein family [Geobacter metallireducens
GS-15]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ + G+DVF H SA+A G +LTEG VT++ +
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQDN----GEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|239994277|ref|ZP_04714801.1| stress response protein CspD [Alteromonas macleodii ATCC 27126]
Length = 72
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE G+D+F H S + G +L GQ VT++ Q
Sbjct: 1 MAVGKVKWFNNAKGFGFIVPED---GGEDIFAHYSTIQMEGYRSLKAGQEVTFEVQQGPK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--LHAENI 64
>gi|299138194|ref|ZP_07031374.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX8]
gi|322436378|ref|YP_004218590.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|298600124|gb|EFI56282.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX8]
gi|321164105|gb|ADW69810.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI+ ++G+DVF+H SA+ S G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFISR----QNGEDVFVHYSAINSNGFKSLQEGQAVQFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ A +++ +
Sbjct: 57 G--WQASDVQPL 66
>gi|238927666|ref|ZP_04659426.1| major cold shock protein [Selenomonas flueggei ATCC 43531]
gi|238884382|gb|EEQ48020.1| major cold shock protein [Selenomonas flueggei ATCC 43531]
Length = 88
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ DKGYGFI+ E GDDVF+H S++ G L+EGQ V +D V+
Sbjct: 24 TGKVKWFSADKGYGFISRED----GDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEGARG- 78
Query: 64 KYSAENL 70
A+N+
Sbjct: 79 -PQADNV 84
>gi|227822300|ref|YP_002826271.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234]
gi|227341300|gb|ACP25518.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +K++N DKG+GFITP+G DVF+H SAV +AGL L +GQ V++D +
Sbjct: 1 MATKGIVKFFNQDKGFGFITPDG---GAKDVFVHISAVQAAGLATLKDGQQVSFDTEPDR 57
Query: 61 ANGKYSAENLKLV 73
A NL+ +
Sbjct: 58 MGKGPKAVNLQAL 70
>gi|27366952|ref|NP_762479.1| cold shock protein CspE [Vibrio vulnificus CMCP6]
gi|37676727|ref|NP_937123.1| cold shock protein [Vibrio vulnificus YJ016]
gi|320158831|ref|YP_004191209.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O]
gi|27358519|gb|AAO07469.1| Cold shock protein CspE [Vibrio vulnificus CMCP6]
gi|37201270|dbj|BAC97093.1| cold shock protein [Vibrio vulnificus YJ016]
gi|319934143|gb|ADV89006.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V++ Q
Sbjct: 6 TGTVKWFNETKGFGFIKQEN----GPDVFAHFSAIKGDGFRTLAEGQKVSFVISQGQKG- 60
Query: 64 KYSAENLKLV 73
AE + L+
Sbjct: 61 -PQAEEITLL 69
>gi|302538395|ref|ZP_07290737.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302447290|gb|EFL19106.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGYRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|86748304|ref|YP_484800.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris HaA2]
gi|86571332|gb|ABD05889.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G++K++N ++GYGFI P+ G DVF+H +AV AGL +LTEGQ ++++ +
Sbjct: 1 MPNTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 KGKGPKAVNLVI 69
>gi|24112787|ref|NP_707297.1| cold shock-like protein CspC [Shigella flexneri 2a str. 301]
gi|82543745|ref|YP_407692.1| cold shock-like protein CspC [Shigella boydii Sb227]
gi|33301070|sp|Q83RI9|CSPC_SHIFL RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|24051715|gb|AAN43004.1| cold shock protein [Shigella flexneri 2a str. 301]
gi|81245156|gb|ABB65864.1| cold shock protein [Shigella boydii Sb227]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ GL L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|159043321|ref|YP_001532115.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
shibae DFL 12]
gi|157911081|gb|ABV92514.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
12]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ E G DVF+H SAV AGL L + + Y+ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERAGLTGLADNTKIEYELREG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ SA LK+V
Sbjct: 57 DGRSSATELKVV 68
>gi|37525539|ref|NP_928883.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784967|emb|CAE13885.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+D+F H S + G L GQ V +
Sbjct: 1 METGTVKWFNNAKGFGFICPAS---GGEDIFAHYSTIQMDGYRTLKAGQKVNFSVHLGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A + +
Sbjct: 58 GN--HASIIVPLENEP 71
>gi|327440173|dbj|BAK16538.1| cold shock protein [Solibacillus silvestris StLB046]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DDVF+H SA+ G L EGQ V ++ V +
Sbjct: 1 MKQGTVKWFNSEKGFGFIELE----GEDDVFVHFSAIQGEGFKTLEEGQKVEFEVVDGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQASNV 63
>gi|315303807|ref|ZP_07874300.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|313627819|gb|EFR96459.1| conserved domain protein [Listeria ivanovii FSL F6-596]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI + G+D+F+H +A+ G +L EGQ V ++ V+ +
Sbjct: 1 MQNGKVKWFNNEKGYGFIESD----GGEDIFVHFTAIQGDGYKSLEEGQAVIFEVVEGNR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--AQAANVEK 65
>gi|302185011|ref|ZP_07261684.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae 642]
Length = 92
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EG + +D+F+H SA+ G L GQ V ++
Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKS--DEDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPK 58
Query: 62 NGKYSAENL 70
A +
Sbjct: 59 G--LQAIKI 65
>gi|302523740|ref|ZP_07276082.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302432635|gb|EFL04451.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI +G DVF+H S + G L E Q V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDGGEG---DVFVHYSEIEGRGFRTLEENQRVEFEVGQGQK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQKVRAI 67
>gi|206602877|gb|EDZ39358.1| cold shock protein [Leptospirillum sp. Group II '5-way CG']
Length = 68
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N +KGYGFI+ E G+D+F+H SA+ +G L EGQLV ++
Sbjct: 1 MARGHVKWFNANKGYGFISQEN----GEDIFVHYSAIGGSGFKTLEEGQLVEFEIQSGAK 56
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 57 G--PQAANVQKV 66
>gi|149242121|pdb|2I5M|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
Protein Cspb Variant A46k S48r
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V ++ V+ +
Sbjct: 1 MLEGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQKVRFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|116254513|ref|YP_770349.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
gi|115259161|emb|CAK10276.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H SA+ G +L EG VT++ Q+
Sbjct: 1 MPTGTVKFFNDDKGFGFITPET---GGTDVFVHVSALQQGG--SLREGDKVTFEVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67
>gi|78065585|ref|YP_368354.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
383]
gi|77966330|gb|ABB07710.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIKMDGFKTLKENQRVSFDVKVGPK 57
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 58 GK--QAANIQAV 67
>gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
Length = 71
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 7 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 62
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 63 -PAAVNVTAI 71
>gi|302552283|ref|ZP_07304625.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736]
gi|302469901|gb|EFL32994.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736]
Length = 127
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVETLKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L ++ + +
Sbjct: 56 GD--QALSLAILDPTPS 70
>gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110822168|gb|ABG97452.1| cold shock protein [Rhodococcus jostii RHA1]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI PE DVF+H S + S G L E Q V+++ Q +
Sbjct: 1 MAEGIVKWFNSEKGFGFIAPED---GSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNK 57
Query: 62 NGKYSAENLKLV 73
A + L+
Sbjct: 58 G--PQATGVTLI 67
>gi|95929274|ref|ZP_01312018.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
gi|95134772|gb|EAT16427.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H S + G +L EG+ VT++
Sbjct: 1 MAEGTVKWFNDAKGFGFIEQDN----GPDVFVHFSEIQGDGFKSLAEGERVTFEITDGQK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|148265690|ref|YP_001232396.1| cold-shock DNA-binding domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399190|gb|ABQ27823.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
Rf4]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E G+DVF+H S++ G +L EGQ VT+D VQ
Sbjct: 1 MANGVVKWFNDSKGFGFIEQEN----GEDVFVHFSSIQGDGFKSLAEGQAVTFDIVQGAK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|156973854|ref|YP_001444761.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116]
gi|156525448|gb|ABU70534.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116]
Length = 79
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 8 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEIEKGPK 64
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 65 G--SHASSVVPIE 75
>gi|154252646|ref|YP_001413470.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154156596|gb|ABS63813.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI P G DVF+H SAV AG+ L EGQ + Y+ V
Sbjct: 1 MATGVVKWFNTQKGYGFIQPSD---GGRDVFVHISAVERAGMSTLNEGQKINYELVTE-- 55
Query: 62 NGKYSAENLKL 72
GK SA NL +
Sbjct: 56 KGKTSAANLTV 66
>gi|328542846|ref|YP_004302955.1| cold shock-like transcription regulator protein [polymorphum gilvum
SL003B-26A1]
gi|326412592|gb|ADZ69655.1| Putative cold shock-like transcription regulator protein
[Polymorphum gilvum SL003B-26A1]
Length = 250
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++K++ DKG+GFITP+ DVF+H SAV +G L GQ V+++ +
Sbjct: 166 RQSGTVKFFKSDKGFGFITPDNGEA---DVFVHISAVERSGFTTLDSGQRVSFETEPDRR 222
Query: 62 NGKYSAENLKLVPKSS 77
A NL+ + +
Sbjct: 223 GKGPKAVNLQALEGEA 238
>gi|89092942|ref|ZP_01165894.1| cold shock domain protein CspD [Oceanospirillum sp. MED92]
gi|89082967|gb|EAR62187.1| cold shock domain protein CspD [Oceanospirillum sp. MED92]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI + +D+F H SA+ G +L GQ V ++
Sbjct: 1 MQTGKVKWFNNSKGYGFILSDEH---AEDLFAHYSAIDVDGYKSLKAGQAVEFETKPGPK 57
Query: 62 NGKYSAENLKLVPK 75
A +K +
Sbjct: 58 G--THAVQIKPLET 69
>gi|89073384|ref|ZP_01159908.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
gi|90579121|ref|ZP_01234931.1| putative cold shock-like protein CspD [Vibrio angustum S14]
gi|89050871|gb|EAR56345.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
gi|90439954|gb|EAS65135.1| putative cold shock-like protein CspD [Vibrio angustum S14]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DD+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEDGE---DDIFAHYSTIQMEGYRTLKAGQQVNYEVQTGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|88799572|ref|ZP_01115148.1| Cold shock protein [Reinekea sp. MED297]
gi|88777657|gb|EAR08856.1| Cold shock protein [Reinekea sp. MED297]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ VT+ Q
Sbjct: 6 TGTVKWFNETKGFGFIEQEN----GPDVFAHFSAIQGTGFKTLAEGQKVTFTITQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN++ V
Sbjct: 61 -PQAENIEKV 69
>gi|114561918|ref|YP_749431.1| cold-shock DNA-binding domain-containing protein [Shewanella
frigidimarina NCIMB 400]
gi|114333211|gb|ABI70593.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
NCIMB 400]
gi|149675718|dbj|BAF64739.1| cold shock protein [Shewanella livingstonensis]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFITP+ G DVF+H ++ S G L EGQ V++D Q
Sbjct: 5 TTGLVKWFNEDKGFGFITPDN---GGADVFVHFRSITSEGFKTLAEGQKVSFDVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ V
Sbjct: 62 --PQAANVVAV 70
>gi|15802236|ref|NP_288259.1| cold shock-like protein CspC [Escherichia coli O157:H7 EDL933]
gi|15831787|ref|NP_310560.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
Sakai]
gi|16129777|ref|NP_416337.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MG1655]
gi|16760726|ref|NP_456343.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765178|ref|NP_460793.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|26248085|ref|NP_754125.1| cold shock-like protein CspC [Escherichia coli CFT073]
gi|29141516|ref|NP_804858.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|30062921|ref|NP_837092.1| cold shock-like protein CspC [Shigella flexneri 2a str. 2457T]
gi|56413244|ref|YP_150319.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180401|ref|YP_216818.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|74311864|ref|YP_310283.1| cold shock-like protein CspC [Shigella sonnei Ss046]
gi|82777211|ref|YP_403560.1| cold shock-like protein CspC [Shigella dysenteriae Sd197]
gi|89108662|ref|AP_002442.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. W3110]
gi|91211042|ref|YP_541028.1| cold shock-like protein CspC [Escherichia coli UTI89]
gi|110641940|ref|YP_669670.1| cold shock-like protein CspC [Escherichia coli 536]
gi|110805383|ref|YP_688903.1| cold shock-like protein CspC [Shigella flexneri 5 str. 8401]
gi|146312039|ref|YP_001177113.1| cold shock-like protein CspC [Enterobacter sp. 638]
gi|152970887|ref|YP_001335996.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|157145410|ref|YP_001452730.1| cold shock-like protein CspC [Citrobacter koseri ATCC BAA-895]
gi|157157347|ref|YP_001463124.1| cold shock-like protein CspC [Escherichia coli E24377A]
gi|157161289|ref|YP_001458607.1| cold shock-like protein CspC [Escherichia coli HS]
gi|161503039|ref|YP_001570151.1| cold shock-like protein CspC [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|161613652|ref|YP_001587617.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167553480|ref|ZP_02347229.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167993785|ref|ZP_02574878.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168234267|ref|ZP_02659325.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168241432|ref|ZP_02666364.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168259923|ref|ZP_02681896.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168462668|ref|ZP_02696599.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168820589|ref|ZP_02832589.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|170081478|ref|YP_001730798.1| CspA family stress protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170682897|ref|YP_001743423.1| cold shock-like protein CspC [Escherichia coli SMS-3-5]
gi|170769370|ref|ZP_02903823.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|170770188|ref|ZP_02904641.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|187733001|ref|YP_001880620.1| cold shock-like protein CspC [Shigella boydii CDC 3083-94]
gi|188492990|ref|ZP_03000260.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|188533664|ref|YP_001907461.1| cold shock-like protein CspC [Erwinia tasmaniensis Et1/99]
gi|189403500|ref|ZP_02795809.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
gi|189404552|ref|ZP_02790213.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
gi|189405077|ref|ZP_02813248.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
gi|191171767|ref|ZP_03033314.1| cold shock protein CspC [Escherichia coli F11]
gi|194430509|ref|ZP_03062983.1| cold shock protein CspC [Escherichia coli B171]
gi|194434939|ref|ZP_03067183.1| cold shock protein CspC [Shigella dysenteriae 1012]
gi|194446619|ref|YP_002041093.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194447468|ref|YP_002045883.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471139|ref|ZP_03077123.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735301|ref|YP_002114871.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195940304|ref|ZP_03085686.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
EC4024]
gi|197247963|ref|YP_002146187.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265795|ref|ZP_03165869.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197362170|ref|YP_002141807.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198245948|ref|YP_002215303.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200391118|ref|ZP_03217729.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205352499|ref|YP_002226300.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206580814|ref|YP_002237792.1| cold shock protein CspC [Klebsiella pneumoniae 342]
gi|207856657|ref|YP_002243308.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|208810722|ref|ZP_03252598.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
gi|208816517|ref|ZP_03257637.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
gi|208819312|ref|ZP_03259632.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
gi|209397128|ref|YP_002270903.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
gi|209919188|ref|YP_002293272.1| cold shock-like protein CspC [Escherichia coli SE11]
gi|213028972|ref|ZP_03343419.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213162944|ref|ZP_03348654.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213420305|ref|ZP_03353371.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213424204|ref|ZP_03357069.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213581262|ref|ZP_03363088.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213620853|ref|ZP_03373636.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213649656|ref|ZP_03379709.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855888|ref|ZP_03384128.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|215487035|ref|YP_002329466.1| cold shock-like protein CspC [Escherichia coli O127:H6 str.
E2348/69]
gi|217328839|ref|ZP_03444920.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
gi|218548618|ref|YP_002382409.1| cold shock-like protein CspC [Escherichia fergusonii ATCC 35469]
gi|218554396|ref|YP_002387309.1| cold shock-like protein CspC [Escherichia coli IAI1]
gi|218558685|ref|YP_002391598.1| cold shock-like protein CspC [Escherichia coli S88]
gi|218689759|ref|YP_002397971.1| cold shock-like protein CspC [Escherichia coli ED1a]
gi|218695386|ref|YP_002403053.1| cold shock-like protein CspC [Escherichia coli 55989]
gi|218699608|ref|YP_002407237.1| cold shock-like protein CspC [Escherichia coli IAI39]
gi|218705322|ref|YP_002412841.1| cold shock-like protein CspC [Escherichia coli UMN026]
gi|224583673|ref|YP_002637471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|227885751|ref|ZP_04003556.1| cold shock family protein CspC [Escherichia coli 83972]
gi|237705773|ref|ZP_04536254.1| cold shock protein [Escherichia sp. 3_2_53FAA]
gi|237731860|ref|ZP_04562341.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
gi|238895399|ref|YP_002920134.1| cold shock-like protein CspC [Klebsiella pneumoniae NTUH-K2044]
gi|238901037|ref|YP_002926833.1| stress protein, member of the CspA-family [Escherichia coli
BW2952]
gi|238912099|ref|ZP_04655936.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|253773223|ref|YP_003036054.1| cold shock-like protein CspC [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161882|ref|YP_003044990.1| cold shock-like protein CspC [Escherichia coli B str. REL606]
gi|254793446|ref|YP_003078283.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
TW14359]
gi|256017989|ref|ZP_05431854.1| cold shock-like protein CspC [Shigella sp. D9]
gi|256022513|ref|ZP_05436378.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B]
gi|259908254|ref|YP_002648610.1| cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
gi|260844168|ref|YP_003221946.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
gi|260855683|ref|YP_003229574.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
gi|260868343|ref|YP_003234745.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
gi|261227680|ref|ZP_05941961.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258154|ref|ZP_05950687.1| Cold shock-like protein cspC [Escherichia coli O157:H7 str.
FRIK966]
gi|261340207|ref|ZP_05968065.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
gi|262041935|ref|ZP_06015118.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|283832781|ref|ZP_06352522.1| conserved domain protein [Citrobacter youngae ATCC 29220]
gi|288934716|ref|YP_003438775.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|289804519|ref|ZP_06535148.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289825969|ref|ZP_06545128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|290508848|ref|ZP_06548219.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
gi|291283004|ref|YP_003499822.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
CB9615]
gi|292488490|ref|YP_003531374.1| cold shock-like protein CspC [Erwinia amylovora CFBP1430]
gi|292899677|ref|YP_003539046.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|293405319|ref|ZP_06649311.1| cold shock protein CspG [Escherichia coli FVEC1412]
gi|293410131|ref|ZP_06653707.1| cold shock protein cspC [Escherichia coli B354]
gi|293415138|ref|ZP_06657781.1| cold shock protein CspG [Escherichia coli B185]
gi|293446195|ref|ZP_06662617.1| cold shock protein CspG [Escherichia coli B088]
gi|296101843|ref|YP_003611989.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|298380961|ref|ZP_06990560.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
gi|300717038|ref|YP_003741841.1| cold shock protein [Erwinia billingiae Eb661]
gi|300816289|ref|ZP_07096511.1| cold shock protein CspE [Escherichia coli MS 107-1]
gi|300825532|ref|ZP_07105593.1| cold shock protein CspE [Escherichia coli MS 119-7]
gi|300899064|ref|ZP_07117350.1| cold shock protein CspE [Escherichia coli MS 198-1]
gi|300904686|ref|ZP_07122520.1| cold shock protein CspE [Escherichia coli MS 84-1]
gi|300917606|ref|ZP_07134258.1| cold shock protein CspE [Escherichia coli MS 115-1]
gi|300924891|ref|ZP_07140823.1| cold shock protein CspE [Escherichia coli MS 182-1]
gi|300928850|ref|ZP_07144356.1| cold shock protein CspE [Escherichia coli MS 187-1]
gi|300938827|ref|ZP_07153537.1| cold shock protein CspE [Escherichia coli MS 21-1]
gi|300951435|ref|ZP_07165274.1| cold shock protein CspE [Escherichia coli MS 116-1]
gi|300956672|ref|ZP_07168948.1| cold shock protein CspE [Escherichia coli MS 175-1]
gi|300981990|ref|ZP_07175834.1| cold shock protein CspE [Escherichia coli MS 200-1]
gi|300994227|ref|ZP_07180784.1| cold shock protein CspE [Escherichia coli MS 45-1]
gi|301020113|ref|ZP_07184242.1| cold shock protein CspE [Escherichia coli MS 196-1]
gi|301026567|ref|ZP_07189993.1| cold shock protein CspE [Escherichia coli MS 69-1]
gi|301050830|ref|ZP_07197684.1| cold shock protein CspE [Escherichia coli MS 185-1]
gi|301305922|ref|ZP_07212005.1| cold shock protein CspE [Escherichia coli MS 124-1]
gi|301327584|ref|ZP_07220801.1| cold shock protein CspE [Escherichia coli MS 78-1]
gi|301645665|ref|ZP_07245593.1| cold shock protein CspE [Escherichia coli MS 146-1]
gi|306814930|ref|ZP_07449086.1| Cold shock-like protein cspC [Escherichia coli NC101]
gi|307138483|ref|ZP_07497839.1| Cold shock-like protein cspC [Escherichia coli H736]
gi|307314098|ref|ZP_07593710.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|309788269|ref|ZP_07682873.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
gi|309794201|ref|ZP_07688625.1| cold shock protein CspE [Escherichia coli MS 145-7]
gi|311279278|ref|YP_003941509.1| cold-shock DNA-binding domain-containing protein [Enterobacter
cloacae SCF1]
gi|312967022|ref|ZP_07781240.1| cold shock-like protein cspI [Escherichia coli 2362-75]
gi|312969860|ref|ZP_07784043.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|317048459|ref|YP_004116107.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|330002884|ref|ZP_08304436.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
gi|331642433|ref|ZP_08343568.1| conserved domain protein [Escherichia coli H736]
gi|331647319|ref|ZP_08348413.1| conserved domain protein [Escherichia coli M605]
gi|331653228|ref|ZP_08354233.1| conserved domain protein [Escherichia coli M718]
gi|331657867|ref|ZP_08358829.1| conserved domain protein [Escherichia coli TA206]
gi|331663313|ref|ZP_08364223.1| conserved domain protein [Escherichia coli TA143]
gi|331668514|ref|ZP_08369362.1| conserved domain protein [Escherichia coli TA271]
gi|331673355|ref|ZP_08374123.1| conserved domain protein [Escherichia coli TA280]
gi|331677700|ref|ZP_08378375.1| conserved domain protein [Escherichia coli H591]
gi|331683325|ref|ZP_08383926.1| conserved domain protein [Escherichia coli H299]
gi|332279025|ref|ZP_08391438.1| cold shock protein [Shigella sp. D9]
gi|76364245|sp|P0A9Y6|CSPC_ECOLI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|76364246|sp|P0A9Y9|CSPC_SALTY RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|85687551|sp|P0A9Y8|CSPC_ECO57 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|85687552|sp|P0A9Y7|CSPC_ECOL6 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|85687553|sp|P0A9Z0|CSPC_SALTI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|25296121|pir||AE0727 cold shock-like protein CspC [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|12515869|gb|AAG56812.1|AE005405_3 cold shock protein [Escherichia coli O157:H7 str. EDL933]
gi|26108488|gb|AAN80690.1|AE016761_265 Cold shock-like protein cspC [Escherichia coli CFT073]
gi|460698|dbj|BAA05854.1| CspC (MsmB) [Escherichia coli]
gi|479005|gb|AAA23619.1| cold-shock protein [Escherichia coli]
gi|1736467|dbj|BAA15634.1| stress protein, member of the CspA-family [Escherichia coli str.
K12 substr. W3110]
gi|1788126|gb|AAC74893.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MG1655]
gi|13362000|dbj|BAB35956.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
gi|16420370|gb|AAL20752.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16503023|emb|CAD05519.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137143|gb|AAO68707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|30041170|gb|AAP16899.1| cold shock protein [Shigella flexneri 2a str. 2457T]
gi|56127501|gb|AAV77007.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128034|gb|AAX65737.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|73855341|gb|AAZ88048.1| cold shock protein [Shigella sonnei Ss046]
gi|81241359|gb|ABB62069.1| cold shock protein [Shigella dysenteriae Sd197]
gi|91072616|gb|ABE07497.1| cold shock protein CspC [Escherichia coli UTI89]
gi|110343532|gb|ABG69769.1| cold shock-like protein CspC [Escherichia coli 536]
gi|110614931|gb|ABF03598.1| cold shock protein [Shigella flexneri 5 str. 8401]
gi|145318915|gb|ABP61062.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
gi|150955736|gb|ABR77766.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|157066969|gb|ABV06224.1| cold shock protein CspC [Escherichia coli HS]
gi|157079377|gb|ABV19085.1| cold shock protein CspC [Escherichia coli E24377A]
gi|157082615|gb|ABV12293.1| hypothetical protein CKO_01152 [Citrobacter koseri ATCC BAA-895]
gi|160864386|gb|ABX21009.1| hypothetical protein SARI_01103 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161363016|gb|ABX66784.1| hypothetical protein SPAB_01376 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|169889313|gb|ACB03020.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. DH10B]
gi|170120949|gb|EDS89880.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|170121694|gb|EDS90625.1| cold shock protein CspC [Escherichia albertii TW07627]
gi|170520615|gb|ACB18793.1| cold shock protein CspC [Escherichia coli SMS-3-5]
gi|187429993|gb|ACD09267.1| cold shock protein CspC [Shigella boydii CDC 3083-94]
gi|188028706|emb|CAO96568.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
gi|188488189|gb|EDU63292.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189360403|gb|EDU78822.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
gi|189364970|gb|EDU83386.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
gi|189371934|gb|EDU90350.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
gi|190908097|gb|EDV67689.1| cold shock protein CspC [Escherichia coli F11]
gi|194405282|gb|ACF65504.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194405772|gb|ACF65991.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194411450|gb|EDX27798.1| cold shock protein CspC [Escherichia coli B171]
gi|194416827|gb|EDX32952.1| cold shock protein CspC [Shigella dysenteriae 1012]
gi|194457503|gb|EDX46342.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194710803|gb|ACF90024.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195634080|gb|EDX52432.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093647|emb|CAR59117.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211666|gb|ACH49063.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197244050|gb|EDY26670.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197940464|gb|ACH77797.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199603563|gb|EDZ02109.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205272280|emb|CAR37158.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322083|gb|EDZ09922.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205328182|gb|EDZ14946.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205331766|gb|EDZ18530.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205339519|gb|EDZ26283.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342665|gb|EDZ29429.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205350669|gb|EDZ37300.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206569872|gb|ACI11648.1| cold shock protein CspC [Klebsiella pneumoniae 342]
gi|206708460|emb|CAR32781.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|208725238|gb|EDZ74945.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
gi|208730860|gb|EDZ79549.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
gi|208739435|gb|EDZ87117.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
gi|209158528|gb|ACI35961.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
gi|209767848|gb|ACI82236.1| cold shock protein [Escherichia coli]
gi|209767850|gb|ACI82237.1| cold shock protein [Escherichia coli]
gi|209767852|gb|ACI82238.1| cold shock protein [Escherichia coli]
gi|209767854|gb|ACI82239.1| cold shock protein [Escherichia coli]
gi|209767856|gb|ACI82240.1| cold shock protein [Escherichia coli]
gi|209912447|dbj|BAG77521.1| cold shock protein [Escherichia coli SE11]
gi|215265107|emb|CAS09495.1| stress protein, member of the CspA-family [Escherichia coli
O127:H6 str. E2348/69]
gi|217318186|gb|EEC26613.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
gi|218352118|emb|CAU97855.1| stress protein, member of the CspA-family [Escherichia coli
55989]
gi|218356159|emb|CAQ88776.1| stress protein, member of the CspA-family [Escherichia fergusonii
ATCC 35469]
gi|218361164|emb|CAQ98747.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
gi|218365454|emb|CAR03181.1| stress protein, member of the CspA-family [Escherichia coli S88]
gi|218369594|emb|CAR17363.1| stress protein, member of the CspA-family [Escherichia coli
IAI39]
gi|218427323|emb|CAR08218.2| stress protein, member of the CspA-family [Escherichia coli ED1a]
gi|218432419|emb|CAR13310.1| stress protein, member of the CspA-family [Escherichia coli
UMN026]
gi|222033570|emb|CAP76311.1| Cold shock-like protein cspC [Escherichia coli LF82]
gi|224468200|gb|ACN46030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224963876|emb|CAX55379.1| Cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
gi|226900530|gb|EEH86789.1| cold shock protein [Escherichia sp. 3_2_53FAA]
gi|226907399|gb|EEH93317.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
gi|227837324|gb|EEJ47790.1| cold shock family protein CspC [Escherichia coli 83972]
gi|238547716|dbj|BAH64067.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|238863580|gb|ACR65578.1| stress protein, member of the CspA-family [Escherichia coli
BW2952]
gi|242377543|emb|CAQ32298.1| stress protein, member of the CspA family; predicted DNA-binding
transcriptional regulator [Escherichia coli BL21(DE3)]
gi|253324267|gb|ACT28869.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973783|gb|ACT39454.1| stress protein, member of the CspA-family [Escherichia coli B
str. REL606]
gi|253977977|gb|ACT43647.1| stress protein, member of the CspA-family [Escherichia coli
BL21(DE3)]
gi|254592846|gb|ACT72207.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. TW14359]
gi|257754332|dbj|BAI25834.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
gi|257759315|dbj|BAI30812.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
gi|257764699|dbj|BAI36194.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
gi|259040741|gb|EEW41829.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|260449056|gb|ACX39478.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|261247022|emb|CBG24839.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993798|gb|ACY88683.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|281178889|dbj|BAI55219.1| cold shock protein [Escherichia coli SE15]
gi|281600822|gb|ADA73806.1| Cold shock-like protein cspC [Shigella flexneri 2002017]
gi|283478185|emb|CAY74101.1| Cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM
12163]
gi|284921742|emb|CBG34814.1| cold shock-like protein CspC [Escherichia coli 042]
gi|288317723|gb|EFC56661.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
gi|288889425|gb|ADC57743.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|289152142|gb|ADC84001.1| cold shock-like protein [Escherichia coli]
gi|289152144|gb|ADC84002.1| cold shock-like protein [Escherichia coli]
gi|289152146|gb|ADC84003.1| cold shock-like protein [Escherichia coli]
gi|289152148|gb|ADC84004.1| cold shock-like protein [Escherichia coli]
gi|289152150|gb|ADC84005.1| cold shock-like protein [Escherichia coli]
gi|289152152|gb|ADC84006.1| cold shock-like protein [Escherichia coli]
gi|289152154|gb|ADC84007.1| cold shock-like protein [Escherichia coli]
gi|289152156|gb|ADC84008.1| cold shock-like protein [Escherichia coli]
gi|289152160|gb|ADC84010.1| cold shock-like protein [Escherichia coli]
gi|289152162|gb|ADC84011.1| cold shock-like protein [Escherichia coli]
gi|289152164|gb|ADC84012.1| cold shock-like protein [Escherichia coli]
gi|289152166|gb|ADC84013.1| cold shock-like protein [Escherichia coli]
gi|289152168|gb|ADC84014.1| cold shock-like protein [Escherichia coli]
gi|289152170|gb|ADC84015.1| cold shock-like protein [Escherichia coli]
gi|289152172|gb|ADC84016.1| cold shock-like protein [Escherichia coli]
gi|289152174|gb|ADC84017.1| cold shock-like protein [Escherichia coli]
gi|289152176|gb|ADC84018.1| cold shock-like protein [Escherichia coli]
gi|289152178|gb|ADC84019.1| cold shock-like protein [Escherichia coli]
gi|289152180|gb|ADC84020.1| cold shock-like protein [Escherichia coli]
gi|289152182|gb|ADC84021.1| cold shock-like protein [Escherichia coli]
gi|289152184|gb|ADC84022.1| cold shock-like protein [Escherichia coli]
gi|289152186|gb|ADC84023.1| cold shock-like protein [Escherichia coli]
gi|289152188|gb|ADC84024.1| cold shock-like protein [Escherichia coli]
gi|289152190|gb|ADC84025.1| cold shock-like protein [Escherichia coli]
gi|289152192|gb|ADC84026.1| cold shock-like protein [Escherichia coli]
gi|289152194|gb|ADC84027.1| cold shock-like protein [Escherichia coli]
gi|289152196|gb|ADC84028.1| cold shock-like protein [Escherichia coli]
gi|289152198|gb|ADC84029.1| cold shock-like protein [Escherichia coli]
gi|289152200|gb|ADC84030.1| cold shock-like protein [Escherichia coli]
gi|289152202|gb|ADC84031.1| cold shock-like protein [Escherichia coli]
gi|289778242|gb|EFD86239.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
gi|290762877|gb|ADD56838.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
CB9615]
gi|291072468|gb|EFE10577.1| conserved domain protein [Citrobacter youngae ATCC 29220]
gi|291199525|emb|CBJ46642.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|291323025|gb|EFE62453.1| cold shock protein CspG [Escherichia coli B088]
gi|291427527|gb|EFF00554.1| cold shock protein CspG [Escherichia coli FVEC1412]
gi|291432786|gb|EFF05765.1| cold shock protein CspG [Escherichia coli B185]
gi|291470599|gb|EFF13083.1| cold shock protein cspC [Escherichia coli B354]
gi|291553921|emb|CBA20966.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora CFBP1430]
gi|294492772|gb|ADE91528.1| cold shock protein CspC [Escherichia coli IHE3034]
gi|295056302|gb|ADF61040.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295095573|emb|CBK84663.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
9394]
gi|298278403|gb|EFI19917.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
gi|299062874|emb|CAX59994.1| cold shock protein [Erwinia billingiae Eb661]
gi|299881920|gb|EFI90131.1| cold shock protein CspE [Escherichia coli MS 196-1]
gi|300297519|gb|EFJ53904.1| cold shock protein CspE [Escherichia coli MS 185-1]
gi|300307364|gb|EFJ61884.1| cold shock protein CspE [Escherichia coli MS 200-1]
gi|300316550|gb|EFJ66334.1| cold shock protein CspE [Escherichia coli MS 175-1]
gi|300357308|gb|EFJ73178.1| cold shock protein CspE [Escherichia coli MS 198-1]
gi|300395440|gb|EFJ78978.1| cold shock protein CspE [Escherichia coli MS 69-1]
gi|300403385|gb|EFJ86923.1| cold shock protein CspE [Escherichia coli MS 84-1]
gi|300406355|gb|EFJ89893.1| cold shock protein CspE [Escherichia coli MS 45-1]
gi|300415174|gb|EFJ98484.1| cold shock protein CspE [Escherichia coli MS 115-1]
gi|300418941|gb|EFK02252.1| cold shock protein CspE [Escherichia coli MS 182-1]
gi|300449309|gb|EFK12929.1| cold shock protein CspE [Escherichia coli MS 116-1]
gi|300456260|gb|EFK19753.1| cold shock protein CspE [Escherichia coli MS 21-1]
gi|300463140|gb|EFK26633.1| cold shock protein CspE [Escherichia coli MS 187-1]
gi|300522015|gb|EFK43084.1| cold shock protein CspE [Escherichia coli MS 119-7]
gi|300530979|gb|EFK52041.1| cold shock protein CspE [Escherichia coli MS 107-1]
gi|300838848|gb|EFK66608.1| cold shock protein CspE [Escherichia coli MS 124-1]
gi|300845833|gb|EFK73593.1| cold shock protein CspE [Escherichia coli MS 78-1]
gi|301076094|gb|EFK90900.1| cold shock protein CspE [Escherichia coli MS 146-1]
gi|301158361|emb|CBW17860.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|305851578|gb|EFM52031.1| Cold shock-like protein cspC [Escherichia coli NC101]
gi|306906236|gb|EFN36753.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|307553841|gb|ADN46616.1| cold shock-like protein CspC [Escherichia coli ABU 83972]
gi|307626698|gb|ADN71002.1| Cold shock-like protein cspC [Escherichia coli UM146]
gi|308122106|gb|EFO59368.1| cold shock protein CspE [Escherichia coli MS 145-7]
gi|308748473|gb|ADO48225.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
gi|308923651|gb|EFP69154.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
gi|310338145|gb|EFQ03234.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|310767829|gb|ADP12779.1| Cold shock-like protein cspC [Erwinia sp. Ejp617]
gi|312172634|emb|CBX80890.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ATCC
BAA-2158]
gi|312288486|gb|EFR16388.1| cold shock-like protein cspI [Escherichia coli 2362-75]
gi|312912826|dbj|BAJ36800.1| cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|312946419|gb|ADR27246.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG
857C]
gi|313649142|gb|EFS13576.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
gi|315061126|gb|ADT75453.1| stress protein, member of the CspA-family [Escherichia coli W]
gi|315136465|dbj|BAJ43624.1| cold shock-like protein cspC [Escherichia coli DH1]
gi|315257366|gb|EFU37334.1| cold shock protein CspE [Escherichia coli MS 85-1]
gi|315286527|gb|EFU45962.1| cold shock protein CspE [Escherichia coli MS 110-3]
gi|315290383|gb|EFU49759.1| cold shock protein CspE [Escherichia coli MS 153-1]
gi|315299954|gb|EFU59192.1| cold shock protein CspE [Escherichia coli MS 16-3]
gi|316950076|gb|ADU69551.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
gi|320085656|emb|CBY95434.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|320173186|gb|EFW48398.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112]
gi|320181137|gb|EFW56056.1| Cold shock protein CspC [Shigella boydii ATCC 9905]
gi|320185016|gb|EFW59797.1| Cold shock protein CspC [Shigella flexneri CDC 796-83]
gi|320188522|gb|EFW63184.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212]
gi|320194464|gb|EFW69095.1| Cold shock protein CspC [Escherichia coli WV_060327]
gi|320198003|gb|EFW72611.1| Cold shock protein CspC [Escherichia coli EC4100B]
gi|320641674|gb|EFX11062.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
G5101]
gi|320647033|gb|EFX15866.1| cold shock-like protein cspc [Escherichia coli O157:H- str.
493-89]
gi|320652316|gb|EFX20614.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H
2687]
gi|320657918|gb|EFX25680.1| cold shock-like protein cspc [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658491|gb|EFX26185.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA
5905]
gi|320668389|gb|EFX35216.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
LSU-61]
gi|321224470|gb|EFX49533.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616832|gb|EFY13740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618071|gb|EFY14963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625742|gb|EFY22561.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626192|gb|EFY23002.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633798|gb|EFY30538.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638952|gb|EFY35645.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640770|gb|EFY37420.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644157|gb|EFY40702.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649229|gb|EFY45667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655388|gb|EFY51696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660856|gb|EFY57087.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662847|gb|EFY59054.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668031|gb|EFY64190.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674207|gb|EFY70301.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675438|gb|EFY71512.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683147|gb|EFY79163.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686841|gb|EFY82819.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322714876|gb|EFZ06447.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323130112|gb|ADX17542.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323152935|gb|EFZ39204.1| cold shock-like protein cspI [Escherichia coli EPECa14]
gi|323175099|gb|EFZ60713.1| cold shock-like protein cspI [Escherichia coli LT-68]
gi|323180603|gb|EFZ66148.1| cold shock-like protein cspI [Escherichia coli 1180]
gi|323186429|gb|EFZ71777.1| cold shock-like protein cspI [Escherichia coli 1357]
gi|323186827|gb|EFZ72146.1| cold shock-like protein cspI [Escherichia coli RN587/1]
gi|323195267|gb|EFZ80447.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199160|gb|EFZ84255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203311|gb|EFZ88338.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207416|gb|EFZ92364.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213768|gb|EFZ98550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217399|gb|EGA02118.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223230|gb|EGA07571.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224674|gb|EGA08947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231422|gb|EGA15535.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235862|gb|EGA19941.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240431|gb|EGA24474.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245324|gb|EGA29324.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246691|gb|EGA30663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253546|gb|EGA37374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258076|gb|EGA41754.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259373|gb|EGA43012.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266797|gb|EGA50283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269003|gb|EGA52459.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|323378298|gb|ADX50566.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323937081|gb|EGB33361.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323940511|gb|EGB36702.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323948292|gb|EGB44280.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323952324|gb|EGB48197.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|323956452|gb|EGB52194.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|323961877|gb|EGB57476.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323968590|gb|EGB63996.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|323972670|gb|EGB67873.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|323977994|gb|EGB73080.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
gi|324007189|gb|EGB76408.1| cold shock protein CspE [Escherichia coli MS 57-2]
gi|324011600|gb|EGB80819.1| cold shock protein CspE [Escherichia coli MS 60-1]
gi|324018044|gb|EGB87263.1| cold shock protein CspE [Escherichia coli MS 117-3]
gi|324113559|gb|EGC07534.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|324118883|gb|EGC12772.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|325497031|gb|EGC94890.1| cold shock-like protein CspC [Escherichia fergusonii ECD227]
gi|326342201|gb|EGD65982.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044]
gi|326343751|gb|EGD67513.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125]
gi|326627557|gb|EGE33900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|327252944|gb|EGE64598.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
gi|328537175|gb|EGF63445.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
gi|330911630|gb|EGH40140.1| cold shock protein CspC [Escherichia coli AA86]
gi|331039231|gb|EGI11451.1| conserved domain protein [Escherichia coli H736]
gi|331044102|gb|EGI16238.1| conserved domain protein [Escherichia coli M605]
gi|331049326|gb|EGI21398.1| conserved domain protein [Escherichia coli M718]
gi|331056115|gb|EGI28124.1| conserved domain protein [Escherichia coli TA206]
gi|331059112|gb|EGI31089.1| conserved domain protein [Escherichia coli TA143]
gi|331063708|gb|EGI35619.1| conserved domain protein [Escherichia coli TA271]
gi|331069553|gb|EGI40940.1| conserved domain protein [Escherichia coli TA280]
gi|331074160|gb|EGI45480.1| conserved domain protein [Escherichia coli H591]
gi|331079540|gb|EGI50737.1| conserved domain protein [Escherichia coli H299]
gi|332089944|gb|EGI95044.1| cold shock-like protein cspI [Shigella boydii 5216-82]
gi|332093283|gb|EGI98342.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
gi|332096604|gb|EGJ01598.1| cold shock-like protein cspI [Shigella boydii 3594-74]
gi|332101377|gb|EGJ04723.1| cold shock protein [Shigella sp. D9]
gi|332343548|gb|AEE56882.1| cold shock-like protein CspI [Escherichia coli UMNK88]
gi|332760591|gb|EGJ90880.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
gi|332762433|gb|EGJ92698.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
gi|332762911|gb|EGJ93165.1| cold shock-like protein cspI [Shigella flexneri K-671]
gi|332767108|gb|EGJ97303.1| cold shock protein [Shigella flexneri 2930-71]
gi|332988724|gb|AEF07707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|333003646|gb|EGK23182.1| cold shock-like protein cspI [Shigella flexneri VA-6]
gi|333004280|gb|EGK23811.1| cold shock-like protein cspI [Shigella flexneri K-218]
gi|333006745|gb|EGK26242.1| cold shock-like protein cspI [Shigella flexneri K-272]
gi|333018379|gb|EGK37678.1| cold shock-like protein cspI [Shigella flexneri K-304]
gi|333018661|gb|EGK37954.1| cold shock-like protein cspI [Shigella flexneri K-227]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|166032459|ref|ZP_02235288.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC
27755]
gi|166026816|gb|EDR45573.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC
27755]
Length = 65
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E SG+DVF+H S + G +L EGQ V +D +
Sbjct: 2 KGTVKWFNNQKGYGFISDE----SGNDVFVHYSGLNMEGFKSLEEGQEVEFDVTEGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAVNVTKL 65
>gi|259416628|ref|ZP_05740548.1| conserved domain protein [Silicibacter sp. TrichCH4B]
gi|259348067|gb|EEW59844.1| conserved domain protein [Silicibacter sp. TrichCH4B]
Length = 68
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE DVFLH SAV AG+ + +GQ VTYD ++
Sbjct: 1 MANGTVKWFNSTKGFGFIQPED---GTQDVFLHVSAVERAGINRIDDGQKVTYDL-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRTSASNLAL 67
>gi|242373029|ref|ZP_04818603.1| cold-shock protein [Staphylococcus epidermidis M23864:W1]
gi|242349183|gb|EES40784.1| cold-shock protein [Staphylococcus epidermidis M23864:W1]
Length = 75
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V +D V+ +
Sbjct: 10 MNNGTVKWFNAEKGFGFIERED----GGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGER 65
Query: 62 NGKYSAENL 70
A N+
Sbjct: 66 G--EQASNV 72
>gi|134097136|ref|YP_001102797.1| cold-shock DNA-binding domain-containing protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291009809|ref|ZP_06567782.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909759|emb|CAL99871.1| cold-shock DNA-binding domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGFI + G DVF+H SA+ +G L EG V ++
Sbjct: 1 MAVGTVKWFNSEKGYGFIATD----GGSDVFVHYSAINMSGFRTLAEGDRVEFEVKAG-R 55
Query: 62 NGKYSAENLKLV 73
+G+ A+ ++ +
Sbjct: 56 DGRSQADGVRKL 67
>gi|222053850|ref|YP_002536212.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
gi|221563139|gb|ACM19111.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI+ + +G+DVF+H SA++ G L EG VT+D V+
Sbjct: 1 MEKGIVKWFNESKGFGFISRD----TGEDVFVHFSAISGEGFKTLNEGDAVTFDVVKGPK 56
Query: 62 NGKYSAENLK 71
A N+K
Sbjct: 57 G--PQAANVK 64
>gi|23099198|ref|NP_692664.1| cold shock protein [Oceanobacillus iheyensis HTE831]
gi|22777426|dbj|BAC13699.1| cold shock protein [Oceanobacillus iheyensis HTE831]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E G+DVF+H SA+ G +L EGQ V+++ V+ +
Sbjct: 1 MENGVVKWFNAEKGYGFIQLE----EGNDVFVHYSAIQEEGFKSLEEGQEVSFEIVEGER 56
Query: 62 NGKYSAENLKL 72
G +A +K
Sbjct: 57 -GPQAANVVKK 66
>gi|269793598|ref|YP_003313053.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
10542]
gi|269095783|gb|ACZ20219.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
10542]
Length = 62
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N +KG+GFI PE DVF H SA+AS+G +L E Q V +D Q A
Sbjct: 2 KWFNAEKGFGFIAPED---GSADVFAHYSAIASSGYRSLDENQKVEFDVTQGPKG--PQA 56
Query: 68 ENLKLV 73
EN++ +
Sbjct: 57 ENIRPL 62
>gi|153008980|ref|YP_001370195.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151560868|gb|ABS14366.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 71
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N +KG+GFI P+ G D+F+H SAV ++GL L + Q V+Y+ +
Sbjct: 1 MAQTGLVKFFNTEKGFGFIKPDD---GGADIFVHISAVQASGLTGLADNQKVSYETEPDR 57
Query: 61 ANGKYSAENLKL 72
A N+ +
Sbjct: 58 RGKGPKAVNITV 69
>gi|126733686|ref|ZP_01749433.1| cold shock protein CspA-related protein, putative [Roseobacter
sp. CCS2]
gi|126716552|gb|EBA13416.1| cold shock protein CspA-related protein, putative [Roseobacter
sp. CCS2]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q V +D +
Sbjct: 1 MASGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLKDDQKVNFDI-EAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 57 DGRESAVNLTL 67
>gi|117619984|ref|YP_857934.1| hypothetical protein AHA_3450 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561391|gb|ABK38339.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI G DVF+H S++ SAG L EGQ V + Q
Sbjct: 6 TGQVKWFNETKGFGFIE----QSQGPDVFVHFSSIQSAGFKTLAEGQKVQFTVTQGKKG- 60
Query: 64 KYSAENLKLV 73
AEN+ L+
Sbjct: 61 -PQAENVTLL 69
>gi|260431448|ref|ZP_05785419.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260415276|gb|EEX08535.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 68
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H S+V +GL L + Q VTY+ +
Sbjct: 1 MPAGTVKWFNTTKGFGFIAPED---GGKDVFVHISSVERSGLTGLADNQKVTYEL-RAGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA+N++LV
Sbjct: 57 DGRESADNIELV 68
>gi|148266031|ref|YP_001232737.1| cold-shock DNA-binding domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399531|gb|ABQ28164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
Rf4]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF+H SA+ G +L EG VT+D
Sbjct: 1 MANGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAITGDGFKSLAEGDRVTFDVTNGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|242239695|ref|YP_002987876.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
gi|242131752|gb|ACS86054.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+D+F H S + G L GQ+V + Q
Sbjct: 1 METGTVKWFNNAKGFGFICPED---GGEDIFAHYSTIQMDGYRTLKAGQIVKFTVHQGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|228923915|ref|ZP_04087192.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835714|gb|EEM81078.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 65
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G
Sbjct: 2 QGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGFKSLEEGQQVEFDIV-DGARG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVVKL 65
>gi|197284583|ref|YP_002150455.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227356765|ref|ZP_03841150.1| cold shock family protein [Proteus mirabilis ATCC 29906]
gi|194682070|emb|CAR41608.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227163055|gb|EEI47990.1| cold shock family protein [Proteus mirabilis ATCC 29906]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP G+D+F H S++ G L GQ V Y ++
Sbjct: 1 METGTVKWFNNAKGFGFITPA---AGGEDIFAHYSSIRMEGYRTLKAGQKVNYSTIKGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|226943910|ref|YP_002798983.1| Cold-shock DNA-binding domain-containing protein [Azotobacter
vinelandii DJ]
gi|226718837|gb|ACO78008.1| Cold-shock DNA-binding domain-containing protein [Azotobacter
vinelandii DJ]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H ++ S+G +L EGQ V++ V+
Sbjct: 4 RQTGTVKWFNDEKGFGFITPE----SGPDLFVHYRSIQSSGFKSLQEGQRVSFVAVKGQK 59
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 60 G--MQADEVQVV 69
>gi|289549550|ref|YP_003470454.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01]
gi|289179082|gb|ADC86327.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G+DVF+H S +A G L EGQ V +D +
Sbjct: 1 MNNGTVKWFNAEKGFGFIERED----GNDVFVHFSGIAGEGYKTLEEGQKVEFDITEGQR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 GD--QATNVVV 65
>gi|261222631|ref|ZP_05936912.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|261318104|ref|ZP_05957301.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261758673|ref|ZP_06002382.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|265984538|ref|ZP_06097273.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|265999381|ref|ZP_05466081.2| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|260921215|gb|EEX87868.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|261297327|gb|EEY00824.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261738657|gb|EEY26653.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|263093577|gb|EEZ17602.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|264663130|gb|EEZ33391.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
Length = 64
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ SA
Sbjct: 2 KWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSSA 58
Query: 68 ENL 70
+NL
Sbjct: 59 DNL 61
>gi|238916449|ref|YP_002929966.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium
eligens ATCC 27750]
gi|238871809|gb|ACR71519.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium
eligens ATCC 27750]
Length = 84
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E SG DVF+H S + G +L EG V +D +
Sbjct: 21 KGTVKWFNNQKGYGFISDE----SGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKG- 75
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 76 -PQATNVTKL 84
>gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258558065|gb|ACV81007.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
DSM 44233]
Length = 129
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IKWY+ DKG+GFI +G GDDV + SA+ AG+ L GQ V +
Sbjct: 1 MPSGKIKWYDADKGFGFIAQDG---GGDDVHVRSSAL-PAGVATLKPGQKVEFGVADGRR 56
Query: 62 NGKYSAENLKLVPKSSN 78
A +K++ +
Sbjct: 57 G--PQALQVKVLQAPPS 71
>gi|149909599|ref|ZP_01898252.1| cold shock-like protein [Moritella sp. PE36]
gi|149807303|gb|EDM67256.1| cold shock-like protein [Moritella sp. PE36]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE GDDVF H S + G L GQLV Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICPES---GGDDVFAHFSIIQMDGYRTLKAGQLVDYEIDEGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|126664621|ref|ZP_01735605.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
ELB17]
gi|126630947|gb|EBA01561.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
ELB17]
Length = 68
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFIT E G DVF+H SA+ G L EGQ V + Q
Sbjct: 4 TTGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENVVPL 68
>gi|33152145|ref|NP_873498.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP]
gi|33148367|gb|AAP95887.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ G D+F+H S + + L EG V ++ +D
Sbjct: 4 ATGIVKWFNSTKGFGFITPD---LGGKDIFVHFSGIIGSNFRTLEEGAKVEFEVQDSDRG 60
Query: 63 GKYSAENLKLV 73
SA N+K +
Sbjct: 61 --PSAVNVKAL 69
>gi|320352985|ref|YP_004194324.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
DSM 2032]
gi|320121487|gb|ADW17033.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
DSM 2032]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI E G DVF+H SA++ +G L EG V ++ V
Sbjct: 1 MLKGTVKWFNESKGFGFIEQEA----GKDVFVHYSAISGSGFKTLNEGDKVQFEIVDGPK 56
Query: 62 NGKYSAENLKL 72
+A N+
Sbjct: 57 G--PAAANVTK 65
>gi|317127033|ref|YP_004093315.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
gi|315471981|gb|ADU28584.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 65
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V D
Sbjct: 2 TGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQGEGFKTLEEGQEVEFEIVDGDRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|260599717|ref|YP_003212288.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
gi|260218894|emb|CBA34249.1| Cold shock protein cspA [Cronobacter turicensis z3032]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFITP+ DVF+H SA+ G L EGQ V++
Sbjct: 6 TGLVKWFNAEKGFGFITPDN---GSKDVFVHFSAIQDNGFKTLEEGQKVSFTVESGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAI 70
>gi|218709066|ref|YP_002416687.1| Cold shock-like protein cspD [Vibrio splendidus LGP32]
gi|218322085|emb|CAV18171.1| Cold shock-like protein cspD [Vibrio splendidus LGP32]
Length = 76
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+
Sbjct: 4 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMEGYRTLKAGQQVDYEVESGPK 60
Query: 62 NGKYSAENLKLVPKSS 77
A ++ V S+
Sbjct: 61 G--SHASSVVPVEGSA 74
>gi|74095589|emb|CAJ27355.1| strongly similar to cold shock-like protein cspE [Cronobacter
sakazakii]
Length = 79
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 15 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 70
Query: 64 KYSAENL 70
SA N+
Sbjct: 71 -PSAANV 76
>gi|54303583|ref|YP_133576.1| putative cold shock-like protein [Photobacterium profundum SS9]
gi|54309095|ref|YP_130115.1| putative cold shock-like protein [Photobacterium profundum SS9]
gi|46913527|emb|CAG20313.1| putative Cold shock-like protein [Photobacterium profundum SS9]
gi|46917014|emb|CAG23776.1| putative Cold shock-like protein [Photobacterium profundum SS9]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --LQAANVVAI 69
>gi|319787046|ref|YP_004146521.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465558|gb|ADV27290.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG D+F+H ++ +G +L EGQ V++ VQ
Sbjct: 4 RQTGTVKWFNDAKGFGFITPE----SGADLFVHFRSIQGSGFKSLQEGQKVSFIVVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 60 G--LQADQVQAL 69
>gi|309702046|emb|CBJ01360.1| cold shock-like protein CspC [Escherichia coli ETEC H10407]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++ +
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDSQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|158321201|ref|YP_001513708.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
oremlandii OhILAs]
gi|158141400|gb|ABW19712.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ + +DVF+H SA+ G L EGQ V ++ V
Sbjct: 1 MKTGIVKWFNNEKGFGFISV----QGEEDVFVHFSAINGDGFKTLEEGQEVEFEVVSGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVSRI 66
>gi|45441309|ref|NP_992848.1| cold shock-like protein CspC [Yersinia pestis biovar Microtus
str. 91001]
gi|51595960|ref|YP_070151.1| cold shock-like protein CspC [Yersinia pseudotuberculosis IP
32953]
gi|108807116|ref|YP_651032.1| cold shock-like protein CspC [Yersinia pestis Antiqua]
gi|108812537|ref|YP_648304.1| cold shock-like protein CspC [Yersinia pestis Nepal516]
gi|123442059|ref|YP_001006042.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145598663|ref|YP_001162739.1| cold shock-like protein CspC [Yersinia pestis Pestoides F]
gi|149366301|ref|ZP_01888336.1| cold shock protein [Yersinia pestis CA88-4125]
gi|157371062|ref|YP_001479051.1| cold shock-like protein CspC [Serratia proteamaculans 568]
gi|165927969|ref|ZP_02223801.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010855|ref|ZP_02231753.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211069|ref|ZP_02237104.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167420033|ref|ZP_02311786.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167427111|ref|ZP_02318864.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170024699|ref|YP_001721204.1| cold shock-like protein CspC [Yersinia pseudotuberculosis YPIII]
gi|186895059|ref|YP_001872171.1| cold shock-like protein CspC [Yersinia pseudotuberculosis PB1/+]
gi|218928871|ref|YP_002346746.1| cold shock-like protein CspC [Yersinia pestis CO92]
gi|229894196|ref|ZP_04509379.1| stress protein, member of the CspA-family [Yersinia pestis
Pestoides A]
gi|229897121|ref|ZP_04512277.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897848|ref|ZP_04512999.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902921|ref|ZP_04518038.1| stress protein, member of the CspA-family [Yersinia pestis
Nepal516]
gi|257168081|ref|YP_003169746.1| cold shock-like protein CspC [Yersinia pestis KIM 10]
gi|270262270|ref|ZP_06190542.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
gi|270486706|ref|ZP_06203780.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|284988616|ref|YP_003422337.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
gi|293395700|ref|ZP_06639982.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
gi|322833600|ref|YP_004213627.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|332162025|ref|YP_004298602.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|45436169|gb|AAS61725.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|51589242|emb|CAH20863.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108776185|gb|ABG18704.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108779029|gb|ABG13087.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115347482|emb|CAL20388.1| cold shock protein [Yersinia pestis CO92]
gi|122089020|emb|CAL11834.1| cold shock-like protein cspC1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145210359|gb|ABP39766.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149292714|gb|EDM42788.1| cold shock protein [Yersinia pestis CA88-4125]
gi|157322826|gb|ABV41923.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
gi|165920026|gb|EDR37327.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990199|gb|EDR42500.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166208249|gb|EDR52729.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166961728|gb|EDR57749.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167053904|gb|EDR63736.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169751233|gb|ACA68751.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186698085|gb|ACC88714.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229680368|gb|EEO76467.1| stress protein, member of the CspA-family [Yersinia pestis
Nepal516]
gi|229688889|gb|EEO80954.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693458|gb|EEO83507.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229703594|gb|EEO90610.1| stress protein, member of the CspA-family [Yersinia pestis
Pestoides A]
gi|270044146|gb|EFA17238.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
gi|270335210|gb|EFA45987.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|291421637|gb|EFE94884.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
gi|320015521|gb|ADV99092.1| stress protein, member of the CspA-family [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|321168801|gb|ADW74500.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|325666255|gb|ADZ42899.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860843|emb|CBX71127.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVTAI 69
>gi|294470718|gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
Length = 263
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + W+N KGYGFITP+ G+++F+H+SA+ S G +LT G V + Q +G
Sbjct: 12 TGKVNWFNDSKGYGFITPDD---DGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGT-DG 67
Query: 64 KYSAENLK 71
K A N+
Sbjct: 68 KTKAVNVT 75
>gi|304413830|ref|ZP_07395247.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
gi|304283550|gb|EFL91945.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
Length = 88
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITP+ + DVF+H SA+ G L EGQ V +D +
Sbjct: 24 KGSVKWFNEAKGFGFITPDDKS---KDVFVHFSAIQGDGFKTLGEGQQVEFDIEEGKKG- 79
Query: 64 KYSAENL 70
+A N+
Sbjct: 80 -PAAINV 85
>gi|260884227|ref|ZP_05895841.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
gi|260873755|gb|EEX80824.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
Length = 64
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ SA
Sbjct: 2 KWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSSA 58
Query: 68 ENL 70
+NL
Sbjct: 59 DNL 61
>gi|239995438|ref|ZP_04715962.1| putative Cold shock-like protein [Alteromonas macleodii ATCC
27126]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFITPE G DVF+H ++AS G L EGQ V+++ Q
Sbjct: 6 NGTVKWFNEEKGFGFITPE---AGGKDVFVHFRSIASDGFKTLKEGQEVSFEVEQGQKG- 61
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 62 -PQAANVVV 69
>gi|294142287|ref|YP_003558265.1| cold shock-like protein cspG [Shewanella violacea DSS12]
gi|22256741|sp|Q9S170|CSPG_SHEVD RecName: Full=Cold shock-like protein CspG
gi|5869509|dbj|BAA84218.1| CspG [Shewanella violacea]
gi|293328756|dbj|BAJ03487.1| cold shock-like protein cspG [Shewanella violacea DSS12]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + GDDVF+H ++ S G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDN---GGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|84393766|ref|ZP_00992514.1| cold shock-like protein CspD [Vibrio splendidus 12B01]
gi|84375628|gb|EAP92527.1| cold shock-like protein CspD [Vibrio splendidus 12B01]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMEGYRTLKAGQQVDYEVESGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A ++ V S+
Sbjct: 58 G--SHASSVVPVEGSA 71
>gi|315123024|ref|YP_004065030.1| cold shock protein [Pseudoalteromonas sp. SM9913]
gi|315016784|gb|ADT70121.1| cold shock protein [Pseudoalteromonas sp. SM9913]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI E G DVF H SA+ S G L EGQ V + Q
Sbjct: 7 GTVKWFNESKGFGFIEQEN----GPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQGQKG-- 60
Query: 65 YSAENLKLV 73
A+N+ +
Sbjct: 61 PQADNITAL 69
>gi|289523010|ref|ZP_06439864.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503553|gb|EFD24717.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 65
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFIT E G DVF+H SA+ G L EG V ++ V+
Sbjct: 3 GTVKWFNATKGYGFITSED----GKDVFVHYSAIDMKGFKTLEEGDKVEFEVVEGAKG-- 56
Query: 65 YSAENLKLV 73
A ++K V
Sbjct: 57 PQAAHVKRV 65
>gi|170723394|ref|YP_001751082.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida W619]
gi|169761397|gb|ACA74713.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ
Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 60 G--LQADKVQVL 69
>gi|23098474|ref|NP_691940.1| cold shock protein [Oceanobacillus iheyensis HTE831]
gi|22776700|dbj|BAC12975.1| cold shock protein [Oceanobacillus iheyensis HTE831]
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ GS+KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V++D + +
Sbjct: 1 MNTGSVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|119775095|ref|YP_927835.1| cold-shock DNA-binding domain-containing protein [Shewanella
amazonensis SB2B]
gi|119767595|gb|ABM00166.1| cold-shock DNA-binding protein family [Shewanella amazonensis
SB2B]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G++KW+N +KG+GF++ + + DVF+H A+ + G L EGQ V++ V+
Sbjct: 6 HTGTVKWFNDEKGFGFLSRDNDS----DVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LLAANVTPL 70
>gi|299140055|ref|ZP_07033224.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298597901|gb|EFI54070.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 94
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G++KW+N KG+GF+ + SG DVF+H SA+ G +L EG V +D +Q
Sbjct: 27 YKGTVKWFNNAKGFGFLARD----SGPDVFVHYSAIQLDGYKSLKEGDEVEFDVIQGTKG 82
Query: 63 GKYSAENL 70
A+ +
Sbjct: 83 --PQADQV 88
>gi|302382206|ref|YP_003818029.1| cold-shock DNA-binding domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192834|gb|ADL00406.1| cold-shock DNA-binding domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI P+ G DVF+H +AV AGL L E V Y+
Sbjct: 1 MATGTVKWFNPTKGFGFIQPDS---GGADVFVHITAVQKAGLTGLDENAKVEYELE--SQ 55
Query: 62 NGKYSAENLKLV 73
GK SA +LK++
Sbjct: 56 RGKTSAIDLKVL 67
>gi|159576908|dbj|BAF92769.1| hypothetical protein [Photobacterium phosphoreum]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|16974807|pdb|1HZC|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
gi|16974808|pdb|1HZC|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
Study Determinants Of Protein Stability
Length = 66
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ +
Sbjct: 1 MQEGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|317491427|ref|ZP_07949863.1| cold shock domain-containing protein CspD [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920974|gb|EFV42297.1| cold shock domain-containing protein CspD [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 73
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P + G+D+F H S++ G L GQ V ++ +
Sbjct: 1 METGTVKWFNNAKGFGFICPL---KGGEDIFAHYSSIQMEGYRTLKAGQQVQFNVQEGPK 57
Query: 62 NGKYSAENLKLVPKS 76
A + +
Sbjct: 58 GN--HANTIVPIESE 70
>gi|294816656|ref|ZP_06775298.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC
27064]
gi|294321471|gb|EFG03606.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC
27064]
Length = 74
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ
Sbjct: 8 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 63
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 64 G--MQADRVQVL 73
>gi|297171013|gb|ADI22027.1| cold shock proteins [uncultured myxobacterium HF0200_05J13]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G G+DVF+H S + G L EGQ V Y+ + +D
Sbjct: 1 MLTGTVKWFNNKKGFGFILPAG---GGEDVFVHFSVIEGDGFKTLAEGQGVEYELMDSDK 57
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 58 G--MRAAVVRP 66
>gi|307327750|ref|ZP_07606934.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886648|gb|EFN17650.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 127
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + G+ L GQ V + V +
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PEGVDALKPGQRVEFGVVAGNR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVTVLDPTPS 70
>gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703]
gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGTGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVTAL 69
>gi|1706172|sp|P54584|CSP_ARTGO RecName: Full=Cold shock protein
gi|758663|gb|AAB81323.1| cold shock protein [Arthrobacter globiformis]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFITP+ S DVF+H S + + G L E V ++ Q
Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDS---DGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAK 57
Query: 62 NGKYSAENLKLV 73
A + LV
Sbjct: 58 G--PQATGVTLV 67
>gi|126173707|ref|YP_001049856.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS155]
gi|125996912|gb|ABN60987.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V++D Q
Sbjct: 4 TTGVVKWFNEDKGFGFISPDN---GGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 61 --PQAGNVVIL 69
>gi|332976448|gb|EGK13296.1| cold shock protein CspA [Desmospora sp. 8437]
Length = 77
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFI E DDVF+H SA+ S G +L EG V+++ VQ +
Sbjct: 12 MIEGTVKWFNADKGFGFIEVE----GRDDVFVHFSAIQSEGFKSLDEGDKVSFEIVQGNR 67
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 68 GD--QAANVVKL 77
>gi|307331143|ref|ZP_07610270.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306883223|gb|EFN14282.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|304310767|ref|YP_003810365.1| Cold shock-like protein [gamma proteobacterium HdN1]
gi|301796500|emb|CBL44708.1| Cold shock-like protein [gamma proteobacterium HdN1]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT + G DVF+H A+ + G L EGQ V+++ +
Sbjct: 5 TGTVKWFNEEKGFGFITQDN---GGPDVFVHFRAIQAEGFKTLKEGQPVSFNVEKGQKG- 60
Query: 64 KYSAENLKL 72
A N+ L
Sbjct: 61 -LQAANVVL 68
>gi|317053824|ref|YP_004117849.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|316951819|gb|ADU71293.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
Length = 70
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N +KG+GFI+PE DVF+H SA+ +L EGQ V +
Sbjct: 6 RGTVKWFNSEKGFGFISPEN---GSKDVFVHYSAIQGTDYRSLDEGQRVEFSVEDGQKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|163785452|ref|ZP_02180056.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
128-5-R1-1]
gi|159879278|gb|EDP73178.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
128-5-R1-1]
Length = 69
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW++ KG+GFIT E +G+D+F+H SA+ G NL EG+ V ++ VQ++
Sbjct: 1 MSTTGTVKWFDSKKGFGFITRED---TGEDIFVHFSAINGQGFKNLEEGEKVEFEVVQDE 57
Query: 61 ANGKYSAENLKL 72
+ A N+
Sbjct: 58 KGFR--AANVTK 67
>gi|147812546|emb|CAN68380.1| hypothetical protein VITISV_018906 [Vitis vinifera]
Length = 189
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFI P+ G+D+F+H++++ S G L+EG+ V + V + +G
Sbjct: 8 TGTVKWFSGQKGFGFIAPDD---GGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDG 63
Query: 64 KYSAENLKLV 73
+ A + V
Sbjct: 64 RTKAVEVTAV 73
>gi|70731246|ref|YP_260987.1| cold shock domain-containing protein CspD [Pseudomonas
fluorescens Pf-5]
gi|68345545|gb|AAY93151.1| cold shock domain protein CspD [Pseudomonas fluorescens Pf-5]
Length = 85
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG T DD+F H SA+ G L GQ V+++ +Q
Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKT---DDLFAHYSAIDMDGYKTLKAGQAVSFEIIQGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A + +
Sbjct: 58 G--LHAIKISALKVPGE 72
>gi|118578996|ref|YP_900246.1| cold-shock DNA-binding domain-containing protein [Pelobacter
propionicus DSM 2379]
gi|118501706|gb|ABK98188.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
2379]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF+H SA+ G +L+EG VT+D Q
Sbjct: 1 MAKGKVKWFNDTKGFGFIEQE----GGEDVFVHFSAIQGEGFKSLSEGDEVTFDITQGPK 56
Query: 62 NGKYSAENLKL 72
G SA +K+
Sbjct: 57 -GLQSANVVKV 66
>gi|22538234|ref|NP_689085.1| CSD family cold shock protein [Streptococcus agalactiae 2603V/R]
gi|25012091|ref|NP_736486.1| hypothetical protein gbs2053 [Streptococcus agalactiae NEM316]
gi|76788151|ref|YP_330629.1| cold shock protein [Streptococcus agalactiae A909]
gi|77405153|ref|ZP_00782252.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae H36B]
gi|77408137|ref|ZP_00784883.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae COH1]
gi|77410841|ref|ZP_00787198.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae CJB111]
gi|77414028|ref|ZP_00790199.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae 515]
gi|22535146|gb|AAN00958.1|AE014286_21 cold shock protein, CSD family [Streptococcus agalactiae 2603V/R]
gi|24413635|emb|CAD47712.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563208|gb|ABA45792.1| cold shock protein [Streptococcus agalactiae A909]
gi|77159910|gb|EAO71050.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae 515]
gi|77163059|gb|EAO74013.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae CJB111]
gi|77173237|gb|EAO76360.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae COH1]
gi|77176296|gb|EAO79066.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae H36B]
gi|319745994|gb|EFV98276.1| cold shock protein CspA [Streptococcus agalactiae ATCC 13813]
Length = 67
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI+ E +G DVF H S + G L EGQ VT+D
Sbjct: 1 MTQGTVKWFNSEKGFGFISSE----TGTDVFAHFSEIKVDGFKTLEEGQKVTFDIQDGQR 56
Query: 62 NGKYSAENLKLVP 74
A N+ LV
Sbjct: 57 G--PQATNINLVK 67
>gi|237808041|ref|YP_002892481.1| cold-shock DNA-binding domain-containing protein [Tolumonas
auensis DSM 9187]
gi|237500302|gb|ACQ92895.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
9187]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI + G DVF+H A+ S G L EGQ V + Q
Sbjct: 5 TGKVKWFNEAKGFGFIQQD----EGPDVFVHFRAINSTGFKTLAEGQRVQFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 60 -PQAENVTVL 68
>gi|85859293|ref|YP_461495.1| cold shock protein [Syntrophus aciditrophicus SB]
gi|85722384|gb|ABC77327.1| cold shock protein [Syntrophus aciditrophicus SB]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI + G DVF+H S++ AG L E Q V ++ Q
Sbjct: 1 MAQGRVKWFNDKKGFGFIEND----EGGDVFVHFSSIQGAGWKTLNESQRVRFEIQQGQK 56
Query: 62 NGKYSAENLKLV 73
SA N++L+
Sbjct: 57 G--PSAVNVELI 66
>gi|90422418|ref|YP_530788.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisB18]
gi|90104432|gb|ABD86469.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB18]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +L EGQ ++++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLIEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL L
Sbjct: 58 KGKGPKAVNLVL 69
>gi|120599254|ref|YP_963828.1| cold-shock DNA-binding domain-containing protein [Shewanella sp.
W3-18-1]
gi|146292672|ref|YP_001183096.1| cold-shock DNA-binding domain-containing protein [Shewanella
putrefaciens CN-32]
gi|120559347|gb|ABM25274.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1]
gi|145564362|gb|ABP75297.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
CN-32]
gi|319425976|gb|ADV54050.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
200]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 60 -PQAENVTII 68
>gi|328883511|emb|CCA56750.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MANGTVKWFNAEKGFGFIEQDG---GGPDVFAHFSNIAAQGFRELQEGQKVSFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|328955745|ref|YP_004373078.1| cold-shock DNA-binding protein family [Coriobacterium glomerans
PW2]
gi|328456069|gb|AEB07263.1| cold-shock DNA-binding protein family [Coriobacterium glomerans
PW2]
Length = 76
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 2 VHRGSIKW-YNPDKGYGFITPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G++K + +KGYGFITP+ + E G DVF+H SA+ G +L EG V ++ +
Sbjct: 1 MATGTLKKSFFREKGYGFITPDDAPEDGSKSDVFVHFSALQMDGFKSLDEGDRVEFELGE 60
Query: 59 NDANGKYSAENLKLVP 74
G+ A N++ +
Sbjct: 61 GKKPGETQAINVRKID 76
>gi|296446943|ref|ZP_06888878.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296255510|gb|EFH02602.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N KG+GFI P G DVF+H +AV AGL L EGQ ++Y+ V +
Sbjct: 1 MNTGVVKWFNAHKGFGFIQPA---AGGADVFVHITAVERAGLRGLAEGQKISYEIVVDSR 57
Query: 62 NGKYSAENLKL 72
+GK SA+ +++
Sbjct: 58 SGKSSADRIEV 68
>gi|149182147|ref|ZP_01860630.1| CspB [Bacillus sp. SG-1]
gi|148850179|gb|EDL64346.1| CspB [Bacillus sp. SG-1]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E +DVF+H SA+ G L EGQ V+++
Sbjct: 1 MLQGKVKWFNAEKGFGFIEVE----GQEDVFVHFSAIQGEGFKTLEEGQTVSFEIEDGAR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVTK 65
>gi|39997003|ref|NP_952954.1| cold shock domain-contain protein [Geobacter sulfurreducens PCA]
gi|39983891|gb|AAR35281.1| cold shock domain family protein [Geobacter sulfurreducens PCA]
gi|298506020|gb|ADI84743.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
KN400]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + G+DVF+H SA+ G +L EG+ V++D V
Sbjct: 1 MAIGRVKWFNDAKGFGFIEQDN----GEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPK 56
Query: 62 NGKYSAENLKL 72
A N+K
Sbjct: 57 G--LQAANVKK 65
>gi|83858279|ref|ZP_00951801.1| cold-shock domain family protein [Oceanicaulis alexandrii
HTCC2633]
gi|83853102|gb|EAP90954.1| cold-shock domain family protein [Oceanicaulis alexandrii
HTCC2633]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI P+ DVF+H SAV AG+ L EGQ ++++ +
Sbjct: 1 MATGIVKWFNSTKGYGFIQPDD---GSKDVFVHASAVERAGMPELKEGQRISFEEEVDKR 57
Query: 62 NGKYSAENL 70
+GK SA +L
Sbjct: 58 SGKTSAGSL 66
>gi|30062528|ref|NP_836699.1| cold shock protein CspG [Shigella flexneri 2a str. 2457T]
gi|56479790|ref|NP_706912.2| cold shock protein CspG [Shigella flexneri 2a str. 301]
gi|110805005|ref|YP_688525.1| cold shock protein CspG [Shigella flexneri 5 str. 8401]
gi|312971120|ref|ZP_07785299.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|30040774|gb|AAP16505.1| putative cold shock protein [Shigella flexneri 2a str. 2457T]
gi|56383341|gb|AAN42619.2| putative cold shock protein [Shigella flexneri 2a str. 301]
gi|110614553|gb|ABF03220.1| cold shock-like protein CspG [Shigella flexneri 5 str. 8401]
gi|281600354|gb|ADA73338.1| Cold shock-like protein cspG [Shigella flexneri 2002017]
gi|310336881|gb|EFQ02048.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|313650757|gb|EFS15158.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
gi|315619077|gb|EFU99658.1| cold shock-like protein cspG [Escherichia coli 3431]
gi|323190646|gb|EFZ75916.1| cold shock-like protein cspG [Escherichia coli RN587/1]
gi|332762777|gb|EGJ93040.1| cold shock-like protein cspG [Shigella flexneri K-671]
gi|332767786|gb|EGJ97977.1| cold shock protein CspG [Shigella flexneri 2930-71]
gi|333008663|gb|EGK28129.1| cold shock-like protein cspG [Shigella flexneri K-272]
gi|333020008|gb|EGK39279.1| cold shock-like protein cspG [Shigella flexneri K-304]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H +A+ S L E Q V + Q G
Sbjct: 2 TGLVKWFNADKGFGFITPDD---GSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR-G 57
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 58 PAAANVVTL 66
>gi|322434962|ref|YP_004217174.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321162689|gb|ADW68394.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI+ ++G+DVF H SA+ S+G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFISR----QNGEDVFAHYSAITSSGFKSLQEGQAVQFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ A +++ +
Sbjct: 57 G--WQAADIQPL 66
>gi|261211013|ref|ZP_05925303.1| cold shock protein CspA [Vibrio sp. RC341]
gi|260839988|gb|EEX66588.1| cold shock protein CspA [Vibrio sp. RC341]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ G D+F+H ++ S G L EGQ V ++ Q +
Sbjct: 5 TTGLVKWFNETKGFGFITPDN---GGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGNKG 61
Query: 63 GKYSAENLKLV 73
A N+ L+
Sbjct: 62 --PQAANVTLL 70
>gi|229086124|ref|ZP_04218344.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
gi|228697183|gb|EEL49948.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [Corynebacterium glutamicum R]
gi|140844216|dbj|BAF53215.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P D+F+H S + +G NL E QLV ++ +
Sbjct: 1 MAQGTVKWFNGEKGFGFIAPND---GSADLFVHYSEIQGSGFRNLEENQLVEFEVGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ ++ +
Sbjct: 58 G--PQAQQVRAI 67
>gi|56964834|ref|YP_176565.1| cold shock protein CspC [Bacillus clausii KSM-K16]
gi|56911077|dbj|BAD65604.1| cold shock protein CspC [Bacillus clausii KSM-K16]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ S G L EGQ V ++ V+
Sbjct: 2 QGKVKWFNAEKGFGFIERED----GDDVFVHFSAINSDGFKTLDEGQDVEFEIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|293606147|ref|ZP_06688512.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
43553]
gi|311107159|ref|YP_003980012.1| cold-shock DNA-binding domain-containing protein 3 [Achromobacter
xylosoxidans A8]
gi|292815602|gb|EFF74718.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
43553]
gi|310761848|gb|ADP17297.1| cold-shock DNA-binding domain protein 3 [Achromobacter
xylosoxidans A8]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITPE G D+F H S + +G +L E Q V++
Sbjct: 1 METGVVKWFNSEKGYGFITPE---AGGKDLFAHFSEIQGSGFKSLEENQRVSFVTANGPK 57
Query: 62 NGKYSAENLKLV 73
A ++++
Sbjct: 58 G--PQATKIQVL 67
>gi|285017895|ref|YP_003375606.1| cold-shock protein [Xanthomonas albilineans GPE PC73]
gi|283473113|emb|CBA15619.1| probable cold-shock protein [Xanthomonas albilineans]
Length = 81
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE T D+F+H A+ G +L EGQ V++ VQ
Sbjct: 15 QGTVKWFNDAKGFGFITPEAGT-DLSDLFVHFRAIQGTGFKSLQEGQKVSFVAVQGQKG- 72
Query: 64 KYSAENLKLV 73
A+ +++V
Sbjct: 73 -MQADQVQVV 81
>gi|15644617|ref|NP_229670.1| cold shock protein [Thermotoga maritima MSB8]
gi|148270057|ref|YP_001244517.1| cold-shock DNA-binding domain-containing protein [Thermotoga
petrophila RKU-1]
gi|170288741|ref|YP_001738979.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
RQ2]
gi|281412062|ref|YP_003346141.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
gi|4982460|gb|AAD36936.1|AE001824_5 cold shock protein [Thermotoga maritima MSB8]
gi|147735601|gb|ABQ46941.1| cold-shock DNA-binding protein family [Thermotoga petrophila
RKU-1]
gi|170176244|gb|ACB09296.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
gi|281373165|gb|ADA66727.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW++ KGYGFIT E G+D+F+H SA+ G L E + V ++ +
Sbjct: 2 RGTVKWFDSKKGYGFITMEN----GEDIFVHWSAIQMDGFKTLRENETVEFEVQKGTKG- 56
Query: 64 KYSAENLKLV 73
A N++ V
Sbjct: 57 -PQAVNVRPV 65
>gi|148259024|ref|YP_001233151.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
cryptum JF-5]
gi|326402151|ref|YP_004282232.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301]
gi|146400705|gb|ABQ29232.1| putative cold-shock DNA-binding domain protein [Acidiphilium
cryptum JF-5]
gi|325049012|dbj|BAJ79350.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H +AV +AG+ L EGQ ++Y+ Q
Sbjct: 1 MAIGTVKWFNTTKGFGFIVPQD---GGKDVFVHITAVQAAGMRGLNEGQKISYEVTQE-- 55
Query: 62 NGKYSAENLKLV 73
GK +A NLK V
Sbjct: 56 RGKAAATNLKAV 67
>gi|331269838|ref|YP_004396330.1| cold shock protein [Clostridium botulinum BKT015925]
gi|329126388|gb|AEB76333.1| cold shock protein [Clostridium botulinum BKT015925]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+DVF H S + G L EGQ V++D V+
Sbjct: 2 TGTVKWFNAEKGFGFITTE----EGNDVFAHFSQINKEGFKTLEEGQNVSFDVVEGAKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITIL 65
>gi|319442530|ref|ZP_07991686.1| putative cold shock protein [Corynebacterium variabile DSM 44702]
Length = 129
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF+ S DDV + RSA+ G+ L GQ V YD
Sbjct: 1 MPTGKVKWFDADKGFGFV----SNPGYDDVHVGRSAL-PEGVTELVPGQRVEYDVATGLR 55
Query: 62 NGKYSAENLKLVPKSS 77
A + ++
Sbjct: 56 GKAPEALRVTVLDHGP 71
>gi|229135998|ref|ZP_04264758.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196]
gi|228647456|gb|EEL03531.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V
Sbjct: 2 QGRVKWFNAEKGFGFIERED----GDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARG- 56
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 57 -PQADNVVKL 65
>gi|239981450|ref|ZP_04703974.1| putative cold shock protein [Streptomyces albus J1074]
gi|291453301|ref|ZP_06592691.1| cold shock protein [Streptomyces albus J1074]
gi|291356250|gb|EFE83152.1| cold shock protein [Streptomyces albus J1074]
Length = 127
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+ + +
Sbjct: 56 GD--QALSVVLLDPAPS 70
>gi|168334103|ref|ZP_02692316.1| cold shock protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFI E GDDVF+H +A+ S G L EGQ V ++ + +
Sbjct: 2 TGKVKWFNPEKGFGFIERED----GDDVFVHFTAIQSEGFKTLEEGQEVEFEITEGNRG- 56
Query: 64 KYSAENLK 71
A N+
Sbjct: 57 -PQASNVT 63
>gi|126668437|ref|ZP_01739394.1| Cold shock protein [Marinobacter sp. ELB17]
gi|126627146|gb|EAZ97786.1| Cold shock protein [Marinobacter sp. ELB17]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI E G DVF+H SA+ + G L EGQ V +
Sbjct: 5 TTGHVKWFNEAKGFGFIAQED----GSDVFVHFSAINADGFRTLAEGQKVQFTVTDGPKG 60
Query: 63 GKYSAENLKLV 73
AEN+ V
Sbjct: 61 --PQAENVTPV 69
>gi|157369432|ref|YP_001477421.1| cold shock protein CspE [Serratia proteamaculans 568]
gi|157321196|gb|ABV40293.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++ Q
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIASNGFKTLAEGQRVEFEITQGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|50120233|ref|YP_049400.1| cold shock protein CspE [Pectobacterium atrosepticum SCRI1043]
gi|227114408|ref|ZP_03828064.1| cold shock protein CspE [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227329730|ref|ZP_03833754.1| cold shock protein CspE [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253687566|ref|YP_003016756.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261822402|ref|YP_003260508.1| cold shock protein CspE [Pectobacterium wasabiae WPP163]
gi|49610759|emb|CAG74204.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
gi|251754144|gb|ACT12220.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261606415|gb|ACX88901.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITDGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVNAI 69
>gi|308071085|ref|YP_003872690.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681]
gi|305860364|gb|ADM72152.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI T G DVF+H SA+ + G L EGQ V +D V+
Sbjct: 2 QGKVKWFNAEKGYGFIE----TSDGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVTKL 65
>gi|158423022|ref|YP_001524314.1| cold shock protein [Azorhizobium caulinodans ORS 571]
gi|158329911|dbj|BAF87396.1| cold shock protein [Azorhizobium caulinodans ORS 571]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ + ++ ++++
Sbjct: 1 MNFGTVKWFNATKGFGFIQPDN---GGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA NL+
Sbjct: 58 SGKNSAGNLQ 67
>gi|317488560|ref|ZP_07947105.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325832026|ref|ZP_08165123.1| cold shock protein CspB [Eggerthella sp. HGA1]
gi|316912302|gb|EFV33866.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325486347|gb|EGC88799.1| cold shock protein CspB [Eggerthella sp. HGA1]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP+KGYGFI S + G+D+F+H S + G L EG V +D
Sbjct: 1 MAEGTVKWFNPEKGYGFI----SQKDGEDLFVHFSEIKMDGFKTLDEGAAVQFDVTTGQ- 55
Query: 62 NGKYSAENLKL 72
NGK A N+
Sbjct: 56 NGKLQASNVTK 66
>gi|257874927|ref|ZP_05654580.1| cold-shock protein [Enterococcus casseliflavus EC20]
gi|257809093|gb|EEV37913.1| cold-shock protein [Enterococcus casseliflavus EC20]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D +
Sbjct: 1 MNNGTVKWFNADKGFGFITGED----GNDVFAHFSAIQGEGFKTLEEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQATNI 63
>gi|91775760|ref|YP_545516.1| cold-shock DNA-binding protein family protein [Methylobacillus
flagellatus KT]
gi|91709747|gb|ABE49675.1| cold-shock DNA-binding protein family [Methylobacillus
flagellatus KT]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+P+ E GDD+F H S + ++G +L E V ++ Q
Sbjct: 1 MALGTVKWFNDAKGFGFISPD---EGGDDLFAHFSEIQTSGYKSLKENDRVQFEITQTAK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 GK--QASNIQK 66
>gi|91975763|ref|YP_568422.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
BisB5]
gi|91682219|gb|ABE38521.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +LTEGQ ++++ +
Sbjct: 1 MSMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 KGKGPKAVNLVI 69
>gi|239616519|ref|YP_002939841.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
gi|239505350|gb|ACR78837.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
19.5.1]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFIT + G+DVF+H S + S G L EGQ V +D
Sbjct: 2 KGTVKWFNAQKGYGFITRD----EGEDVFIHFSGIVSDGFKTLEEGQRVEFDIENGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+K V
Sbjct: 57 -AQAVNVKTVE 66
>gi|163857107|ref|YP_001631405.1| cold shock-like protein [Bordetella petrii DSM 12804]
gi|163260835|emb|CAP43137.1| cold shock-like protein [Bordetella petrii]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++
Sbjct: 1 METGVVKWFNSEKGYGFITPE---AGGKDLFAHFSEIQANGFKSLEENQRVSFVTANGPK 57
Query: 62 NGKYSAENLKLV 73
A ++++
Sbjct: 58 G--PQATKIQVL 67
>gi|163751591|ref|ZP_02158812.1| cold shock domain family protein [Shewanella benthica KT99]
gi|294141301|ref|YP_003557279.1| cold shock domain family protein [Shewanella violacea DSS12]
gi|161328503|gb|EDP99657.1| cold shock domain family protein [Shewanella benthica KT99]
gi|293327770|dbj|BAJ02501.1| cold shock domain family protein [Shewanella violacea DSS12]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAIQSDGFKTLDEGQKVQFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +V
Sbjct: 60 -PQAENVTIV 68
>gi|92118615|ref|YP_578344.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91801509|gb|ABE63884.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 71
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL L+EGQ VT++ +
Sbjct: 1 MSMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVEQAGLTELSEGQRVTFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 KGKGPKAVNLVI 69
>gi|51244785|ref|YP_064669.1| cold shock protein [Desulfotalea psychrophila LSv54]
gi|50875822|emb|CAG35662.1| probable cold shock protein [Desulfotalea psychrophila LSv54]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E GDD+F+H +++ ++G L EG V++D +
Sbjct: 1 MAEGIVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVSFDIEEGQK 56
Query: 62 NGKYSAENLKLV 73
+A N+ +
Sbjct: 57 G--PAAANVTAL 66
>gi|310644316|ref|YP_003949075.1| cold shock-like protein cspc [Paenibacillus polymyxa SC2]
gi|309249267|gb|ADO58834.1| Cold shock-like protein cspC [Paenibacillus polymyxa SC2]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI G DVF+H SA+ + G L EGQ V +D V+
Sbjct: 2 QGKVKWFNAEKGYGFIETAD----GGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVTKL 65
>gi|189425683|ref|YP_001952860.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
gi|189421942|gb|ACD96340.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GF+ E G+DVF+H SA+ S G +L EG V ++ V+
Sbjct: 1 MTTGRVKWFNDSKGFGFLEQE----GGEDVFVHFSAINSNGFKSLAEGDTVEFEVVKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANVTRI 66
>gi|13476765|ref|NP_108334.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|319784316|ref|YP_004143792.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|14027526|dbj|BAB53795.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|317170204|gb|ADV13742.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ ++ EGQ + Y+ V+++
Sbjct: 1 MSTGTVKWFNATKGFGFIQPDD---GSADVFVHISAVERAGMRDIVEGQKLGYEMVRDNK 57
Query: 62 NGKYSAENLK 71
+GK SA+ LK
Sbjct: 58 SGKMSADQLK 67
>gi|21223064|ref|NP_628843.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|256785836|ref|ZP_05524267.1| cold shock protein [Streptomyces lividans TK24]
gi|289769728|ref|ZP_06529106.1| cold shock protein [Streptomyces lividans TK24]
gi|7321274|emb|CAB82052.1| cold shock protein [Streptomyces coelicolor A3(2)]
gi|289699927|gb|EFD67356.1| cold shock protein [Streptomyces lividans TK24]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENLKL 72
+AEN+ L
Sbjct: 58 G--PTAENIVL 66
>gi|322515089|ref|ZP_08068096.1| CspA family cold shock transcriptional regulator [Actinobacillus
ureae ATCC 25976]
gi|322118895|gb|EFX91077.1| CspA family cold shock transcriptional regulator [Actinobacillus
ureae ATCC 25976]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ +D
Sbjct: 4 ATGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSDRG 60
Query: 63 GKYSAENLKLV 73
SA N+K +
Sbjct: 61 --PSAVNVKAL 69
>gi|299138232|ref|ZP_07031411.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298599478|gb|EFI55637.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ GDDVF+H +A+ S G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFLSRAN----GDDVFVHHTAIQSNGFRSLQEGQSVQFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ AEN+++V
Sbjct: 57 G--WQAENVQVV 66
>gi|83942901|ref|ZP_00955361.1| cold shock family protein [Sulfitobacter sp. EE-36]
gi|83954075|ref|ZP_00962795.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83841112|gb|EAP80282.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
gi|83845909|gb|EAP83786.1| cold shock family protein [Sulfitobacter sp. EE-36]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG G DVF+H SAV +GL L + Q V+++ +
Sbjct: 1 MPTGTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADEQKVSFEMSEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +L+L+
Sbjct: 57 DGRQMATDLELL 68
>gi|332978230|gb|EGK14961.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)]
Length = 71
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N KG+GFI E SG+D+F+H A+ G +L +GQ V + + +
Sbjct: 4 REQGTVKWFNDAKGFGFIQRE----SGEDIFVHFRAIQGDGYRSLQDGQKVEFVVTEGEK 59
Query: 62 NGKYSAENLKLVPK 75
AE + V
Sbjct: 60 G--LQAEEVTKVDA 71
>gi|326789293|ref|YP_004307114.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
gi|326540057|gb|ADZ81916.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI+ E GDDVF+H SA+ G +L EGQ V +D +
Sbjct: 2 TGTVKWFNAEKGFGFISRED----GDDVFVHFSAIQGDGFKSLDEGQRVNFDITKGARG- 56
Query: 64 KYSAENLK 71
AEN+
Sbjct: 57 -AQAENVT 63
>gi|269103742|ref|ZP_06156439.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163640|gb|EEZ42136.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
102761]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V++D Q
Sbjct: 4 ATGIVKWFNEEKGFGFISQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --PQAANVVAL 69
>gi|260438024|ref|ZP_05791840.1| cold shock protein [Butyrivibrio crossotus DSM 2876]
gi|292809503|gb|EFF68708.1| cold shock protein [Butyrivibrio crossotus DSM 2876]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFI+ E G D+F+H S + G L EGQ V ++
Sbjct: 1 MNKGTVKWFNDQKGFGFISDEN----GKDIFVHFSGIVMDGHKKLEEGQKVEFEVADGAK 56
Query: 62 NGKYSAENLKLV 73
A N+K++
Sbjct: 57 G--PQAVNVKVI 66
>gi|254293790|ref|YP_003059813.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
gi|254042321|gb|ACT59116.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K+YN KG+GFI P+ G+DVF+H +A+ AG+ L+EGQ V++D Q+
Sbjct: 1 METGTVKFYNDTKGFGFIAPDN---GGNDVFVHATALERAGMNGLSEGQKVSFDTAQDKR 57
Query: 62 NGKYSAENLKL 72
+GK + +N++
Sbjct: 58 SGKMAVDNIQP 68
>gi|218189944|gb|EEC72371.1| hypothetical protein OsI_05633 [Oryza sativa Indica Group]
Length = 131
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
HRG++KW+N KG+GFI+P+ +D+F+H+S++ + G +L EG+ V + +++
Sbjct: 6 RHRGTVKWFNDTKGFGFISPDD---GSEDLFVHQSSIKADGFRSLAEGEQVEFAISESE- 61
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 62 DGRTKAVDVT 71
>gi|153875276|ref|ZP_02003150.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS]
gi|152068260|gb|EDN66850.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG+IKW+N KG+GFI+P G DVF+H S + G L EGQ V ++ +
Sbjct: 1 MMRGTIKWFNETKGFGFISPTD---DGRDVFVHYSCIQQKGFKTLKEGQEVEFEATEGPK 57
Query: 62 NGK 64
+
Sbjct: 58 GPQ 60
>gi|152975949|ref|YP_001375466.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152024701|gb|ABS22471.1| putative cold-shock DNA-binding domain protein [Bacillus
cytotoxicus NVH 391-98]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|121535516|ref|ZP_01667325.1| cold-shock DNA-binding domain protein [Thermosinus
carboxydivorans Nor1]
gi|121305935|gb|EAX46868.1| cold-shock DNA-binding domain protein [Thermosinus
carboxydivorans Nor1]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V+ G
Sbjct: 3 GKVKWFNAEKGYGFIERED----GGDVFVHFSAIQEQGFKSLTEGQTVEFDIVEGTR-GP 57
Query: 65 YSAENLKLVPK 75
+A +KLV
Sbjct: 58 QAANVVKLVKS 68
>gi|89072407|ref|ZP_01158986.1| cold shock protein [Photobacterium sp. SKA34]
gi|90577241|ref|ZP_01233052.1| cold shock protein [Vibrio angustum S14]
gi|89051939|gb|EAR57391.1| cold shock protein [Photobacterium sp. SKA34]
gi|90440327|gb|EAS65507.1| cold shock protein [Vibrio angustum S14]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG- 60
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 61 -LQAANVVAL 69
>gi|302871348|ref|YP_003839984.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
obsidiansis OB47]
gi|312128141|ref|YP_003993015.1| cold-shock DNA-binding domain-containing protein
[Caldicellulosiruptor hydrothermalis 108]
gi|312134639|ref|YP_004001977.1| cold-shock DNA-binding domain-containing protein
[Caldicellulosiruptor owensensis OL]
gi|312622949|ref|YP_004024562.1| cold-shock DNA-binding domain-containing protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312794129|ref|YP_004027052.1| cold-shock DNA-binding domain-containing protein
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|302574207|gb|ADL41998.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
obsidiansis OB47]
gi|311774690|gb|ADQ04177.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
owensensis OL]
gi|311778160|gb|ADQ07646.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
hydrothermalis 108]
gi|312181269|gb|ADQ41439.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312203416|gb|ADQ46743.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+NP+KGYGFI+ + G+DVF+H SA+ G L EGQ V +D V+ +
Sbjct: 2 RGRVKWFNPEKGYGFISADN----GEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTERGN 57
Query: 64 KYSAENLKLVP 74
A N++ V
Sbjct: 58 --QAMNVRKVK 66
>gi|163751227|ref|ZP_02158455.1| stress response protein CspD [Shewanella benthica KT99]
gi|294140596|ref|YP_003556574.1| stress response protein CspD [Shewanella violacea DSS12]
gi|161328941|gb|EDQ00015.1| stress response protein CspD [Shewanella benthica KT99]
gi|293327065|dbj|BAJ01796.1| stress response protein CspD [Shewanella violacea DSS12]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF H S + G L GQ V ++
Sbjct: 1 MANGTVKWFNNAKGFGFICPD---AGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--MHASVISTI 67
>gi|94971545|ref|YP_593593.1| cold-shock DNA-binding protein family protein [Candidatus
Koribacter versatilis Ellin345]
gi|94553595|gb|ABF43519.1| cold-shock DNA-binding protein family [Candidatus Koribacter
versatilis Ellin345]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI+ ++G+DVF+H SA+ S G +L EGQ VT+ V+
Sbjct: 1 MEQGTVKWFNDAKGYGFISR----QNGEDVFVHFSAIESKGFRSLQEGQAVTFSVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ AE + +
Sbjct: 57 G--WQAEKVSAL 66
>gi|289549228|ref|YP_003474216.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
14484]
gi|289182845|gb|ADC90089.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
14484]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
MV RG++KW++ +KGYGFIT + + DVF+H SA+ G L +GQ V ++ ++
Sbjct: 1 MVVRGTVKWFSKEKGYGFITRDD---NQGDVFVHFSAIQQRGFKTLEQGQKVEFEIEEDS 57
Query: 61 ANGKYSAENLKLV 73
+ A+N++++
Sbjct: 58 KGPR--AKNVRVI 68
>gi|316932717|ref|YP_004107699.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris DX-1]
gi|315600431|gb|ADU42966.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +LTEGQ ++++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 KGKGPKAVNLVV 69
>gi|269102226|ref|ZP_06154923.1| cold shock protein CspD [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268162124|gb|EEZ40620.1| cold shock protein CspD [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 73
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE D+F H S + G L GQ V Y+
Sbjct: 1 MAIGTVKWFNNAKGFGFICPED---GDGDIFAHYSTIQMDGYRTLKAGQQVNYEVQTGPK 57
Query: 62 NGKYSAENLKLVPK 75
+ A + +
Sbjct: 58 G--FHAREITPIES 69
>gi|77918392|ref|YP_356207.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
gi|77544475|gb|ABA88037.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
DSM 2380]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H S + G +L EG V ++ Q
Sbjct: 1 MAEGTVKWFNDAKGFGFIEQDN----GPDVFVHFSEIQGEGFKSLAEGDRVVFEVTQGQK 56
Query: 62 NGKYSAENLKLV 73
+ N++ V
Sbjct: 57 G--PQSVNVRRV 66
>gi|85715497|ref|ZP_01046478.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85697692|gb|EAQ35568.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EG ++Y+ V N
Sbjct: 5 ATGTVKWFNGQKGYGFIQPDS---GGKDVFVHISAVERAGLNSLNEGDKISYEVVAN--R 59
Query: 63 GKYSAENLKL 72
GK SAENL++
Sbjct: 60 GKESAENLRV 69
>gi|330448696|ref|ZP_08312344.1| cold-shock domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492887|dbj|GAA06841.1| cold-shock domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V++D Q
Sbjct: 4 ATGIVKWFNEEKGFGFITQDN---GGADVFVHFRAITGEGFKTLAEGQKVSFDIEQGQKG 60
Query: 63 GKYSAENLKL 72
A N++
Sbjct: 61 --PQAANVEK 68
>gi|294630457|ref|ZP_06709017.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292833790|gb|EFF92139.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELLEGQKVTFDIGQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|148550775|ref|YP_001260214.1| cold-shock DNA-binding protein family protein [Sphingomonas
wittichii RW1]
gi|148503194|gb|ABQ71447.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
RW1]
Length = 71
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N DKGYGFI PE G D F+H SAV AG L + Q ++Y+ + D G
Sbjct: 5 TGTVKFFNADKGYGFIAPET---GGQDAFVHISAVERAGFNTLNQNQRLSYEL-ETDRRG 60
Query: 64 KYSAENLK 71
K SA NL+
Sbjct: 61 KTSAVNLQ 68
>gi|294141223|ref|YP_003557201.1| cold shock-like protein cspA [Shewanella violacea DSS12]
gi|22256742|sp|Q9S1B7|CSPA_SHEVD RecName: Full=Cold shock-like protein CspA
gi|5869504|dbj|BAA84217.1| CspA [Shewanella violacea]
gi|293327692|dbj|BAJ02423.1| cold shock-like protein cspA [Shewanella violacea DSS12]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N DKG+GF+T + G DVF+H A+AS G L EGQ VT++ Q
Sbjct: 5 NTGTVKWFNEDKGFGFLTQDN---GGADVFVHFRAIASEGFKTLDEGQKVTFEVEQGPKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --LQASNV 67
>gi|30021641|ref|NP_833272.1| cold shock protein [Bacillus cereus ATCC 14579]
gi|30263487|ref|NP_845864.1| cold shock protein CspB [Bacillus anthracis str. Ames]
gi|42782603|ref|NP_979850.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
gi|47528880|ref|YP_020229.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
gi|47569978|ref|ZP_00240642.1| cold-shock domain family protein-related protein [Bacillus cereus
G9241]
gi|49186338|ref|YP_029590.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
gi|49479281|ref|YP_037619.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52141994|ref|YP_084834.1| cold shock protein [Bacillus cereus E33L]
gi|118478788|ref|YP_895939.1| cold-shock DNA-binding protein family protein [Bacillus
thuringiensis str. Al Hakam]
gi|167637065|ref|ZP_02395345.1| cold shock protein CspB [Bacillus anthracis str. A0193]
gi|190564523|ref|ZP_03017444.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
gi|196034229|ref|ZP_03101639.1| cold shock protein CspB [Bacillus cereus W]
gi|196038347|ref|ZP_03105656.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
gi|196043023|ref|ZP_03110262.1| cold shock protein CspB [Bacillus cereus 03BB108]
gi|206969007|ref|ZP_03229962.1| cold shock protein CspB [Bacillus cereus AH1134]
gi|206975495|ref|ZP_03236408.1| cold shock protein CspB [Bacillus cereus H3081.97]
gi|217960932|ref|YP_002339500.1| cold shock protein CspB [Bacillus cereus AH187]
gi|218232785|ref|YP_002368351.1| cold shock protein CspB [Bacillus cereus B4264]
gi|218898630|ref|YP_002447041.1| cold shock protein CspB [Bacillus cereus G9842]
gi|218904664|ref|YP_002452498.1| cold shock protein CspB [Bacillus cereus AH820]
gi|222096990|ref|YP_002531047.1| cold shock protein [Bacillus cereus Q1]
gi|225865502|ref|YP_002750880.1| cold shock protein CspB [Bacillus cereus 03BB102]
gi|227813634|ref|YP_002813643.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
gi|228902007|ref|ZP_04066172.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|228912180|ref|ZP_04075895.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|228916152|ref|ZP_04079722.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228922246|ref|ZP_04085553.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228928576|ref|ZP_04091613.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934813|ref|ZP_04097644.1| Cold shock protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228940621|ref|ZP_04103187.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228947154|ref|ZP_04109448.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228953805|ref|ZP_04115844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228959724|ref|ZP_04121399.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228969486|ref|ZP_04130298.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228973540|ref|ZP_04134124.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980099|ref|ZP_04140415.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|228986625|ref|ZP_04146756.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229047204|ref|ZP_04192818.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|229071035|ref|ZP_04204261.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|229080742|ref|ZP_04213260.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
gi|229092502|ref|ZP_04223658.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
gi|229110960|ref|ZP_04240521.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
gi|229123055|ref|ZP_04252262.1| Cold shock protein cspB [Bacillus cereus 95/8201]
gi|229128809|ref|ZP_04257786.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
gi|229140143|ref|ZP_04268701.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
gi|229146104|ref|ZP_04274481.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|229151732|ref|ZP_04279933.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|229159169|ref|ZP_04287204.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
gi|229162371|ref|ZP_04290334.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|229179821|ref|ZP_04307168.1| Cold shock protein cspB [Bacillus cereus 172560W]
gi|229185756|ref|ZP_04312933.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
gi|229191625|ref|ZP_04318604.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|229197647|ref|ZP_04324368.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|229600528|ref|YP_002867733.1| cold shock protein CspB [Bacillus anthracis str. A0248]
gi|254686104|ref|ZP_05149963.1| cold shock protein CspB [Bacillus anthracis str. CNEVA-9066]
gi|254723505|ref|ZP_05185293.1| cold shock protein CspB [Bacillus anthracis str. A1055]
gi|254738577|ref|ZP_05196280.1| cold shock protein CspB [Bacillus anthracis str. Western North
America USA6153]
gi|254744864|ref|ZP_05202542.1| cold shock protein CspB [Bacillus anthracis str. Kruger B]
gi|296504044|ref|YP_003665744.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|300117665|ref|ZP_07055447.1| cold shock protein CspB [Bacillus cereus SJ1]
gi|301055025|ref|YP_003793236.1| cold shock protein [Bacillus anthracis CI]
gi|29897196|gb|AAP10473.1| Cold shock protein [Bacillus cereus ATCC 14579]
gi|30258122|gb|AAP27350.1| cold shock protein CspB [Bacillus anthracis str. Ames]
gi|42738529|gb|AAS42458.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
gi|47504028|gb|AAT32704.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
gi|47553376|gb|EAL11763.1| cold-shock domain family protein-related protein [Bacillus cereus
G9241]
gi|49180265|gb|AAT55641.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
gi|49330837|gb|AAT61483.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51975463|gb|AAU17013.1| cold shock protein [Bacillus cereus E33L]
gi|118418013|gb|ABK86432.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
str. Al Hakam]
gi|167514572|gb|EDR89938.1| cold shock protein CspB [Bacillus anthracis str. A0193]
gi|190563840|gb|EDV17804.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
gi|195993303|gb|EDX57261.1| cold shock protein CspB [Bacillus cereus W]
gi|196026507|gb|EDX65175.1| cold shock protein CspB [Bacillus cereus 03BB108]
gi|196030755|gb|EDX69353.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
gi|206736048|gb|EDZ53206.1| cold shock protein CspB [Bacillus cereus AH1134]
gi|206746397|gb|EDZ57791.1| cold shock protein CspB [Bacillus cereus H3081.97]
gi|217063996|gb|ACJ78246.1| cold shock protein CspB [Bacillus cereus AH187]
gi|218160742|gb|ACK60734.1| cold shock protein CspB [Bacillus cereus B4264]
gi|218538592|gb|ACK90990.1| cold shock protein CspB [Bacillus cereus AH820]
gi|218542988|gb|ACK95382.1| cold shock protein CspB [Bacillus cereus G9842]
gi|221241048|gb|ACM13758.1| cold shock protein [Bacillus cereus Q1]
gi|225790203|gb|ACO30420.1| cold shock protein CspB [Bacillus cereus 03BB102]
gi|227002717|gb|ACP12460.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
gi|228585836|gb|EEK43933.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|228591787|gb|EEK49627.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
gi|228597728|gb|EEK55371.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
gi|228603650|gb|EEK61124.1| Cold shock protein cspB [Bacillus cereus 172560W]
gi|228621055|gb|EEK77918.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|228624303|gb|EEK81095.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
gi|228631793|gb|EEK88421.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|228637444|gb|EEK93897.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|228643229|gb|EEK99502.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
gi|228654697|gb|EEL10558.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
gi|228660349|gb|EEL15982.1| Cold shock protein cspB [Bacillus cereus 95/8201]
gi|228672541|gb|EEL27824.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
gi|228690789|gb|EEL44564.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
gi|228702476|gb|EEL54944.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
gi|228711975|gb|EEL63924.1| Cold shock protein cspB [Bacillus cereus F65185]
gi|228724165|gb|EEL75508.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|228773110|gb|EEM21545.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228779685|gb|EEM27936.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|228786235|gb|EEM34230.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228790229|gb|EEM37999.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228799854|gb|EEM46796.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805773|gb|EEM52353.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228812401|gb|EEM58728.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228819127|gb|EEM65186.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228824713|gb|EEM70514.1| Cold shock protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228831088|gb|EEM76688.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228837301|gb|EEM82635.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228843350|gb|EEM88428.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228847517|gb|EEM92456.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|228857593|gb|EEN02088.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
gi|229264936|gb|ACQ46573.1| cold shock protein CspB [Bacillus anthracis str. A0248]
gi|296325096|gb|ADH08024.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|298724998|gb|EFI65658.1| cold shock protein CspB [Bacillus cereus SJ1]
gi|300377194|gb|ADK06098.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
gi|324327436|gb|ADY22696.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|326941254|gb|AEA17150.1| cold shock protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|295696398|ref|YP_003589636.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
gi|295412000|gb|ADG06492.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ G +L EGQLV +D V+
Sbjct: 2 QGRVKWFNAEKGYGFIERED----GGDVFVHFSAIQQDGFKSLEEGQLVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ V
Sbjct: 57 -PQAANVVKV 65
>gi|260427897|ref|ZP_05781876.1| conserved domain protein [Citreicella sp. SE45]
gi|260422389|gb|EEX15640.1| conserved domain protein [Citreicella sp. SE45]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+Y+ +
Sbjct: 1 MPSGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYELKEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LK +
Sbjct: 57 DGRMMASDLKTL 68
>gi|39995688|ref|NP_951639.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
gi|39982452|gb|AAR33912.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
gi|298504699|gb|ADI83422.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
KN400]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KGYGFI E G+DVF+H S++ G L EGQ VT+D VQ
Sbjct: 1 MAKGVVKWFNDSKGYGFIEQEN----GEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|317496049|ref|ZP_07954409.1| cold-shock' DNA-binding domain-containing protein [Gemella
moribillum M424]
gi|316913624|gb|EFV35110.1| cold-shock' DNA-binding domain-containing protein [Gemella
moribillum M424]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DVF+H S++ G L EG V ++
Sbjct: 1 MKQGTVKWFNEEKGFGFIAVE----GEKDVFVHFSSIQKDGFKTLKEGDKVEFEVEDGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 G--PQAANVVVL 66
>gi|163749217|ref|ZP_02156467.1| putative Cold shock-like protein [Shewanella benthica KT99]
gi|161331287|gb|EDQ02176.1| putative Cold shock-like protein [Shewanella benthica KT99]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H ++ S G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDN---GGADVFVHFRSITSDGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|126698954|ref|YP_001087851.1| putative cold shock protein [Clostridium difficile 630]
gi|254974900|ref|ZP_05271372.1| putative cold shock protein [Clostridium difficile QCD-66c26]
gi|255092289|ref|ZP_05321767.1| putative cold shock protein [Clostridium difficile CIP 107932]
gi|255100373|ref|ZP_05329350.1| putative cold shock protein [Clostridium difficile QCD-63q42]
gi|255306315|ref|ZP_05350486.1| putative cold shock protein [Clostridium difficile ATCC 43255]
gi|255314027|ref|ZP_05355610.1| putative cold shock protein [Clostridium difficile QCD-76w55]
gi|255516707|ref|ZP_05384383.1| putative cold shock protein [Clostridium difficile QCD-97b34]
gi|255649806|ref|ZP_05396708.1| putative cold shock protein [Clostridium difficile QCD-37x79]
gi|255655364|ref|ZP_05400773.1| putative cold shock protein [Clostridium difficile QCD-23m63]
gi|260682964|ref|YP_003214249.1| putative cold shock protein [Clostridium difficile CD196]
gi|260686562|ref|YP_003217695.1| putative cold shock protein [Clostridium difficile R20291]
gi|296451352|ref|ZP_06893090.1| cold shock protein CspA [Clostridium difficile NAP08]
gi|296880298|ref|ZP_06904263.1| cold shock protein CspA [Clostridium difficile NAP07]
gi|306519907|ref|ZP_07406254.1| putative cold shock protein [Clostridium difficile QCD-32g58]
gi|115250391|emb|CAJ68213.1| Cold shock protein CspB [Clostridium difficile]
gi|260209127|emb|CBA62316.1| putative cold shock protein [Clostridium difficile CD196]
gi|260212578|emb|CBE03568.1| putative cold shock protein [Clostridium difficile R20291]
gi|296259768|gb|EFH06625.1| cold shock protein CspA [Clostridium difficile NAP08]
gi|296428741|gb|EFH14623.1| cold shock protein CspA [Clostridium difficile NAP07]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ EG DVF+H SA+ G L EGQ V ++ V + A
Sbjct: 1 MKTGVVKWFNNEKGFGFISVEGEG----DVFVHFSAITGDGYKTLEEGQSVEFEVV-DGA 55
Query: 62 NGKYSAENLKL 72
G +A ++L
Sbjct: 56 KGPQAANVVRL 66
>gi|329769588|ref|ZP_08260993.1| cold shock protein cspA [Gemella sanguinis M325]
gi|328838540|gb|EGF88147.1| cold shock protein cspA [Gemella sanguinis M325]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI E DVF+H S++ G L EG V + +
Sbjct: 1 MKQGTVKWFNEEKGFGFIAVE----GEKDVFVHFSSIQKEGFKTLKEGDKVEFSVEEGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 G--PQAANVVVL 66
>gi|258620199|ref|ZP_05715238.1| cold shock transcriptional regulator [Vibrio mimicus VM573]
gi|258624440|ref|ZP_05719387.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
gi|262171708|ref|ZP_06039386.1| cold shock protein CspA [Vibrio mimicus MB-451]
gi|258583287|gb|EEW08089.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
gi|258587557|gb|EEW12267.1| cold shock transcriptional regulator [Vibrio mimicus VM573]
gi|261892784|gb|EEY38770.1| cold shock protein CspA [Vibrio mimicus MB-451]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V ++ Q +
Sbjct: 5 TTGLVKWFNETKGFGFITPDN---GGADLFVHFKSIVSDGFKTLSEGQKVAFNVEQGNKG 61
Query: 63 GKYSAENLKLV 73
A N+ L+
Sbjct: 62 --PQAANVTLL 70
>gi|212709693|ref|ZP_03317821.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens
DSM 30120]
gi|212687504|gb|EEB47032.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens
DSM 30120]
Length = 76
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFI P GDDVF H S + G L GQ V Y
Sbjct: 1 MNTGTVKWFNNAKGFGFICPTD---GGDDVFAHYSTIQMDGYRTLKAGQKVNYSVGAGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A+ + + +S
Sbjct: 58 G--SHADVIIPITESGE 72
>gi|261343363|ref|ZP_05971008.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541]
gi|282568501|gb|EFB74036.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541]
Length = 79
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P G+D+F H S + G L GQ V + +
Sbjct: 1 MDTGTVKWFNNAKGFGFICPSD---GGEDIFAHYSCIQMEGYRTLKAGQKVNFSVIIGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|120599534|ref|YP_964108.1| cold-shock DNA-binding domain-containing protein [Shewanella sp.
W3-18-1]
gi|146292469|ref|YP_001182893.1| cold-shock DNA-binding domain-containing protein [Shewanella
putrefaciens CN-32]
gi|120559627|gb|ABM25554.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1]
gi|145564159|gb|ABP75094.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
CN-32]
gi|319425771|gb|ADV53845.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
200]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFI+P+ G D F+H A+ S G L EGQ V++D Q
Sbjct: 4 TTGVVKWFNEEKGFGFISPDN---GGADAFVHFRAIVSEGFKTLGEGQKVSFDIEQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 61 --PQAANVVVL 69
>gi|291616667|ref|YP_003519409.1| CspE [Pantoea ananatis LMG 20103]
gi|304395648|ref|ZP_07377531.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308186006|ref|YP_003930137.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1]
gi|317047280|ref|YP_004114928.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|291151697|gb|ADD76281.1| CspE [Pantoea ananatis LMG 20103]
gi|304356942|gb|EFM21306.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308056516|gb|ADO08688.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1]
gi|316948897|gb|ADU68372.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
gi|327393093|dbj|BAK10515.1| cold shock-like protein CspE [Pantoea ananatis AJ13355]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++ + A G
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 61 PSAANVISL 69
>gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
gi|255918937|gb|ACU34448.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
43827]
Length = 131
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF+T + G+DV++ +SA+ G+ L GQ + + +
Sbjct: 5 PTGKVKWYDSEKGFGFVTQD----GGEDVYVRKSAL-PEGVDALKAGQRIEFGMAEGRRG 59
Query: 63 GKYSAENLKLVPKSSN 78
A +++LV + +
Sbjct: 60 --PQALSVRLVDPAPS 73
>gi|213691595|ref|YP_002322181.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|312132324|ref|YP_003999663.1| cspc2 [Bifidobacterium longum subsp. longum BBMN68]
gi|213523056|gb|ACJ51803.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|311773640|gb|ADQ03128.1| CspC2 [Bifidobacterium longum subsp. longum BBMN68]
gi|320457683|dbj|BAJ68304.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
15697]
Length = 129
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ KGYGFIT E G DVFL A+ G L +G V Y V
Sbjct: 1 MPTGRVRWFDAAKGYGFITSE----EGKDVFLPAQAL-PTGATTLRKGAKVEYSVVDGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ + +
Sbjct: 56 G--PQAMDVRLIASAPS 70
>gi|188534489|ref|YP_001908286.1| cold shock protein CspE [Erwinia tasmaniensis Et1/99]
gi|259909137|ref|YP_002649493.1| cold shock protein CspE [Erwinia pyrifoliae Ep1/96]
gi|292487595|ref|YP_003530467.1| cold shock-like protein CspE [Erwinia amylovora CFBP1430]
gi|292898834|ref|YP_003538203.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|300715812|ref|YP_003740615.1| Cold shock protein [Erwinia billingiae Eb661]
gi|188029531|emb|CAO97408.1| Putative cold shock-like protein [Erwinia tasmaniensis Et1/99]
gi|224964759|emb|CAX56276.1| similar to cold shock protein CspE [Erwinia pyrifoliae Ep1/96]
gi|291198682|emb|CBJ45791.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
gi|291553014|emb|CBA20059.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora CFBP1430]
gi|299061648|emb|CAX58764.1| Cold shock protein [Erwinia billingiae Eb661]
gi|310766962|gb|ADP11912.1| Cold shock-like protein cspE (CSP-E) [Erwinia sp. Ejp617]
gi|312171701|emb|CBX79959.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora ATCC
BAA-2158]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVAAI 69
>gi|326445076|ref|ZP_08219810.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A +G L EG LV +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAGSGYRELHEGDLVNFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|331641125|ref|ZP_08342260.1| cold shock protein [Escherichia coli H736]
gi|331645781|ref|ZP_08346884.1| cold shock protein [Escherichia coli M605]
gi|331651632|ref|ZP_08352651.1| cold shock protein [Escherichia coli M718]
gi|331672164|ref|ZP_08372956.1| cold shock protein [Escherichia coli TA280]
gi|331676282|ref|ZP_08376994.1| cold shock protein [Escherichia coli H591]
gi|1778540|gb|AAB40823.1| cold shock-like protein [Escherichia coli]
gi|331037923|gb|EGI10143.1| cold shock protein [Escherichia coli H736]
gi|331044533|gb|EGI16660.1| cold shock protein [Escherichia coli M605]
gi|331049910|gb|EGI21968.1| cold shock protein [Escherichia coli M718]
gi|331070631|gb|EGI41994.1| cold shock protein [Escherichia coli TA280]
gi|331076340|gb|EGI47622.1| cold shock protein [Escherichia coli H591]
gi|332097718|gb|EGJ02692.1| cold shock-like protein cspI [Shigella boydii 3594-74]
Length = 79
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 15 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 70
Query: 64 KYSAENL 70
SA N+
Sbjct: 71 -PSAANV 76
>gi|15830399|ref|NP_309172.1| cold shock protein CspG [Escherichia coli O157:H7 str. Sakai]
gi|16128956|ref|NP_415510.1| cold shock protein homolog, cold-inducible [Escherichia coli str.
K-12 substr. MG1655]
gi|26247008|ref|NP_753048.1| cold shock protein CspG [Escherichia coli CFT073]
gi|74311547|ref|YP_309966.1| cold shock protein CspG [Shigella sonnei Ss046]
gi|82544687|ref|YP_408634.1| cold shock protein CspG [Shigella boydii Sb227]
gi|89107840|ref|AP_001620.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
substr. W3110]
gi|91210080|ref|YP_540066.1| cold shock protein CspG [Escherichia coli UTI89]
gi|110641171|ref|YP_668901.1| cold shock protein CspG [Escherichia coli 536]
gi|157157933|ref|YP_001462221.1| cold shock protein CspG [Escherichia coli E24377A]
gi|157160508|ref|YP_001457826.1| cold shock protein CspG [Escherichia coli HS]
gi|168747396|ref|ZP_02772418.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|168754310|ref|ZP_02779317.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|168763226|ref|ZP_02788233.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|168767487|ref|ZP_02792494.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|168773676|ref|ZP_02798683.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|168781006|ref|ZP_02806013.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|168787495|ref|ZP_02812502.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|168800619|ref|ZP_02825626.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|170020611|ref|YP_001725565.1| cold shock protein CspG [Escherichia coli ATCC 8739]
gi|170080648|ref|YP_001729968.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
substr. DH10B]
gi|170683191|ref|YP_001744186.1| cold shock protein CspG [Escherichia coli SMS-3-5]
gi|187730656|ref|YP_001880813.1| cold shock protein CspG [Shigella boydii CDC 3083-94]
gi|188493174|ref|ZP_03000444.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|191166565|ref|ZP_03028394.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|191172438|ref|ZP_03033979.1| cold shock DNA-binding protein [Escherichia coli F11]
gi|193066327|ref|ZP_03047377.1| cold shock DNA-binding protein [Escherichia coli E22]
gi|193070805|ref|ZP_03051739.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194429832|ref|ZP_03062345.1| cold shock DNA-binding protein [Escherichia coli B171]
gi|194432411|ref|ZP_03064698.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
gi|194438072|ref|ZP_03070165.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|195935247|ref|ZP_03080629.1| cold shock protein CspG [Escherichia coli O157:H7 str. EC4024]
gi|208806958|ref|ZP_03249295.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208814978|ref|ZP_03256157.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208822652|ref|ZP_03262971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209398274|ref|YP_002269715.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209918242|ref|YP_002292326.1| cold shock protein CspG [Escherichia coli SE11]
gi|215486106|ref|YP_002328537.1| cold shock protein CspG [Escherichia coli O127:H6 str. E2348/69]
gi|217324361|ref|ZP_03440445.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218553577|ref|YP_002386490.1| cold shock protein CspG [Escherichia coli IAI1]
gi|218557881|ref|YP_002390794.1| cold shock protein CspG [Escherichia coli S88]
gi|218688878|ref|YP_002397090.1| cold shock protein CspG [Escherichia coli ED1a]
gi|218694525|ref|YP_002402192.1| cold shock protein CspG [Escherichia coli 55989]
gi|218700498|ref|YP_002408127.1| cold shock protein CspG [Escherichia coli IAI39]
gi|218704406|ref|YP_002411925.1| cold shock protein CspG [Escherichia coli UMN026]
gi|227884058|ref|ZP_04001863.1| CspA family cold shock transcriptional regulator [Escherichia
coli 83972]
gi|237707032|ref|ZP_04537513.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA]
gi|238900249|ref|YP_002926045.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
gi|253773981|ref|YP_003036812.1| cold shock protein CspG [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254161102|ref|YP_003044210.1| cold shock protein CspG [Escherichia coli B str. REL606]
gi|254792247|ref|YP_003077084.1| cold shock protein CspG [Escherichia coli O157:H7 str. TW14359]
gi|256018751|ref|ZP_05432616.1| cold shock protein CspG [Shigella sp. D9]
gi|256023309|ref|ZP_05437174.1| cold shock protein CspG [Escherichia sp. 4_1_40B]
gi|260843237|ref|YP_003221015.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O103:H2 str. 12009]
gi|260854693|ref|YP_003228584.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O26:H11 str. 11368]
gi|260867198|ref|YP_003233600.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O111:H- str. 11128]
gi|261227159|ref|ZP_05941440.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
str. FRIK2000]
gi|261255727|ref|ZP_05948260.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O157:H7 str. FRIK966]
gi|291281988|ref|YP_003498806.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str.
CB9615]
gi|293404283|ref|ZP_06648277.1| cold shock-like protein cspG [Escherichia coli FVEC1412]
gi|293409367|ref|ZP_06652943.1| conserved hypothetical protein [Escherichia coli B354]
gi|293414265|ref|ZP_06656914.1| cold shock protein [Escherichia coli B185]
gi|293433284|ref|ZP_06661712.1| cold shock-like protein CspC [Escherichia coli B088]
gi|297519754|ref|ZP_06938140.1| cold shock protein CspG [Escherichia coli OP50]
gi|298380066|ref|ZP_06989671.1| cold shock-like protein cspG [Escherichia coli FVEC1302]
gi|300819431|ref|ZP_07099628.1| transcriptional repressor activity CueR [Escherichia coli MS
107-1]
gi|300823951|ref|ZP_07104074.1| transcriptional repressor activity CueR [Escherichia coli MS
119-7]
gi|300896362|ref|ZP_07114904.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300902844|ref|ZP_07120792.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300920966|ref|ZP_07137356.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300925325|ref|ZP_07141215.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|300929241|ref|ZP_07144720.1| transcriptional repressor activity CueR [Escherichia coli MS
187-1]
gi|300937663|ref|ZP_07152469.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|300949634|ref|ZP_07163620.1| transcriptional repressor activity CueR [Escherichia coli MS
116-1]
gi|300957866|ref|ZP_07170042.1| transcriptional repressor activity CueR [Escherichia coli MS
175-1]
gi|300978251|ref|ZP_07174199.1| transcriptional repressor activity CueR [Escherichia coli MS
45-1]
gi|300982793|ref|ZP_07176303.1| transcriptional repressor activity CueR [Escherichia coli MS
200-1]
gi|301022616|ref|ZP_07186487.1| transcriptional repressor activity CueR [Escherichia coli MS
196-1]
gi|301023111|ref|ZP_07186918.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|301047756|ref|ZP_07194812.1| transcriptional repressor activity CueR [Escherichia coli MS
185-1]
gi|301302393|ref|ZP_07208524.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|301327177|ref|ZP_07220443.1| transcriptional repressor activity CueR [Escherichia coli MS
78-1]
gi|301646375|ref|ZP_07246260.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|306812571|ref|ZP_07446764.1| cold shock protein CspG [Escherichia coli NC101]
gi|307137622|ref|ZP_07496978.1| cold shock protein CspG [Escherichia coli H736]
gi|307311625|ref|ZP_07591265.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|309795021|ref|ZP_07689441.1| transcriptional repressor activity CueR [Escherichia coli MS
145-7]
gi|312968952|ref|ZP_07783159.1| cold shock-like protein cspG [Escherichia coli 2362-75]
gi|331641521|ref|ZP_08342656.1| conserved domain protein [Escherichia coli H736]
gi|331646244|ref|ZP_08347347.1| conserved domain protein [Escherichia coli M605]
gi|331652014|ref|ZP_08353033.1| conserved domain protein [Escherichia coli M718]
gi|331657050|ref|ZP_08358012.1| conserved domain protein [Escherichia coli TA206]
gi|331662397|ref|ZP_08363320.1| conserved domain protein [Escherichia coli TA143]
gi|331667381|ref|ZP_08368245.1| conserved domain protein [Escherichia coli TA271]
gi|331672524|ref|ZP_08373313.1| conserved domain protein [Escherichia coli TA280]
gi|331676780|ref|ZP_08377476.1| conserved domain protein [Escherichia coli H591]
gi|331682495|ref|ZP_08383114.1| conserved domain protein [Escherichia coli H299]
gi|332279828|ref|ZP_08392241.1| cold shock protein CspG [Shigella sp. D9]
gi|71154162|sp|P0A980|CSPG_ECO57 RecName: Full=Cold shock-like protein CspG; Short=CPS-G
gi|71154163|sp|P0A979|CSPG_ECOL6 RecName: Full=Cold shock-like protein CspG; Short=CPS-G
gi|71154164|sp|P0A978|CSPG_ECOLI RecName: Full=Cold shock-like protein CspG; Short=CPS-G
gi|71154165|sp|P0A981|CSPG_SHIFL RecName: Full=Cold shock-like protein CspG; Short=CPS-G
gi|26107408|gb|AAN79591.1|AE016758_195 Cold shock-like protein cspG [Escherichia coli CFT073]
gi|1468921|dbj|BAA09669.1| cold shock potein CspG [Escherichia coli K-12]
gi|2226344|gb|AAB61741.1| CspG [Escherichia coli str. K-12 substr. W3110]
gi|2367114|gb|AAC74075.1| cold shock protein homolog, cold-inducible [Escherichia coli str.
K-12 substr. MG1655]
gi|4062549|dbj|BAA35756.1| DNA-binding transcriptional regulator [Escherichia coli str. K12
substr. W3110]
gi|13360605|dbj|BAB34568.1| cold shock-like protein CspG [Escherichia coli O157:H7 str.
Sakai]
gi|73855024|gb|AAZ87731.1| cold shock protein-like protein [Shigella sonnei Ss046]
gi|81246098|gb|ABB66806.1| CspG [Shigella boydii Sb227]
gi|91071654|gb|ABE06535.1| cold shock-like protein G [Escherichia coli UTI89]
gi|110342763|gb|ABG69000.1| cold shock-like protein CspG [Escherichia coli 536]
gi|157066188|gb|ABV05443.1| cold shock DNA-binding protein [Escherichia coli HS]
gi|157079963|gb|ABV19671.1| cold shock DNA-binding protein [Escherichia coli E24377A]
gi|169755539|gb|ACA78238.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169888483|gb|ACB02190.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
substr. DH10B]
gi|170520909|gb|ACB19087.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5]
gi|187427648|gb|ACD06922.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
gi|187770523|gb|EDU34367.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|188018100|gb|EDU56222.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|188488373|gb|EDU63476.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189001168|gb|EDU70154.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|189358364|gb|EDU76783.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|189363259|gb|EDU81678.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|189366600|gb|EDU85016.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|189372631|gb|EDU91047.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|189377110|gb|EDU95526.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|190903370|gb|EDV63090.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|190907322|gb|EDV66920.1| cold shock DNA-binding protein [Escherichia coli F11]
gi|192926034|gb|EDV80678.1| cold shock DNA-binding protein [Escherichia coli E22]
gi|192955916|gb|EDV86385.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194412114|gb|EDX28423.1| cold shock DNA-binding protein [Escherichia coli B171]
gi|194419298|gb|EDX35380.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
gi|194423008|gb|EDX39002.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|208726759|gb|EDZ76360.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208731626|gb|EDZ80314.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208738137|gb|EDZ85820.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209159674|gb|ACI37107.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209774128|gb|ACI85376.1| cold shock-like protein CspG [Escherichia coli]
gi|209774130|gb|ACI85377.1| cold shock-like protein CspG [Escherichia coli]
gi|209774132|gb|ACI85378.1| cold shock-like protein CspG [Escherichia coli]
gi|209774134|gb|ACI85379.1| cold shock-like protein CspG [Escherichia coli]
gi|209774136|gb|ACI85380.1| cold shock-like protein CspG [Escherichia coli]
gi|209911501|dbj|BAG76575.1| cold shock-like protein [Escherichia coli SE11]
gi|215264178|emb|CAS08522.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6
str. E2348/69]
gi|217320582|gb|EEC29006.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218351257|emb|CAU96961.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
gi|218360345|emb|CAQ97895.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
gi|218364650|emb|CAR02336.1| DNA-binding transcriptional regulator [Escherichia coli S88]
gi|218370484|emb|CAR18291.1| DNA-binding transcriptional regulator [Escherichia coli IAI39]
gi|218426442|emb|CAR07268.1| DNA-binding transcriptional regulator [Escherichia coli ED1a]
gi|218431503|emb|CAR12381.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
gi|222032705|emb|CAP75444.1| Cold shock-like protein cspG [Escherichia coli LF82]
gi|226898242|gb|EEH84501.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA]
gi|227838810|gb|EEJ49276.1| CspA family cold shock transcriptional regulator [Escherichia
coli 83972]
gi|238860954|gb|ACR62952.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
gi|242376803|emb|CAQ31516.1| cold shock protein CspG [Escherichia coli BL21(DE3)]
gi|253325025|gb|ACT29627.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973003|gb|ACT38674.1| DNA-binding transcriptional regulator [Escherichia coli B str.
REL606]
gi|253977217|gb|ACT42887.1| DNA-binding transcriptional regulator [Escherichia coli
BL21(DE3)]
gi|254591647|gb|ACT71008.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
str. TW14359]
gi|257753342|dbj|BAI24844.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O26:H11 str. 11368]
gi|257758384|dbj|BAI29881.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O103:H2 str. 12009]
gi|257763554|dbj|BAI35049.1| DNA-binding transcriptional regulator CspG [Escherichia coli
O111:H- str. 11128]
gi|260449865|gb|ACX40287.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|281178106|dbj|BAI54436.1| cold shock-like protein [Escherichia coli SE15]
gi|284920825|emb|CBG33888.1| cold shock-like protein [Escherichia coli 042]
gi|290761861|gb|ADD55822.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str.
CB9615]
gi|291324103|gb|EFE63525.1| cold shock-like protein CspC [Escherichia coli B088]
gi|291428869|gb|EFF01894.1| cold shock-like protein cspG [Escherichia coli FVEC1412]
gi|291434323|gb|EFF07296.1| cold shock protein [Escherichia coli B185]
gi|291469835|gb|EFF12319.1| conserved hypothetical protein [Escherichia coli B354]
gi|294493742|gb|ADE92498.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
gi|298279764|gb|EFI21272.1| cold shock-like protein cspG [Escherichia coli FVEC1302]
gi|299881188|gb|EFI89399.1| transcriptional repressor activity CueR [Escherichia coli MS
196-1]
gi|300300365|gb|EFJ56750.1| transcriptional repressor activity CueR [Escherichia coli MS
185-1]
gi|300307058|gb|EFJ61578.1| transcriptional repressor activity CueR [Escherichia coli MS
200-1]
gi|300315437|gb|EFJ65221.1| transcriptional repressor activity CueR [Escherichia coli MS
175-1]
gi|300359773|gb|EFJ75643.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300397232|gb|EFJ80770.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|300405111|gb|EFJ88649.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300409716|gb|EFJ93254.1| transcriptional repressor activity CueR [Escherichia coli MS
45-1]
gi|300412086|gb|EFJ95396.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300418547|gb|EFK01858.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|300450965|gb|EFK14585.1| transcriptional repressor activity CueR [Escherichia coli MS
116-1]
gi|300457311|gb|EFK20804.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|300462807|gb|EFK26300.1| transcriptional repressor activity CueR [Escherichia coli MS
187-1]
gi|300523583|gb|EFK44652.1| transcriptional repressor activity CueR [Escherichia coli MS
119-7]
gi|300528027|gb|EFK49089.1| transcriptional repressor activity CueR [Escherichia coli MS
107-1]
gi|300842232|gb|EFK69992.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|300846210|gb|EFK73970.1| transcriptional repressor activity CueR [Escherichia coli MS
78-1]
gi|301075411|gb|EFK90217.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|305853334|gb|EFM53773.1| cold shock protein CspG [Escherichia coli NC101]
gi|306908180|gb|EFN38679.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|307552814|gb|ADN45589.1| cold shock-like protein CspG [Escherichia coli ABU 83972]
gi|307627598|gb|ADN71902.1| cold shock protein CspG [Escherichia coli UM146]
gi|308121325|gb|EFO58587.1| transcriptional repressor activity CueR [Escherichia coli MS
145-7]
gi|309701267|emb|CBJ00567.1| cold shock-like protein [Escherichia coli ETEC H10407]
gi|312286354|gb|EFR14267.1| cold shock-like protein cspG [Escherichia coli 2362-75]
gi|312945495|gb|ADR26322.1| cold shock protein CspG [Escherichia coli O83:H1 str. NRG 857C]
gi|315060274|gb|ADT74601.1| DNA-binding transcriptional regulator [Escherichia coli W]
gi|315135640|dbj|BAJ42799.1| cold shock-like protein cspG [Escherichia coli DH1]
gi|315258037|gb|EFU38005.1| transcriptional repressor activity CueR [Escherichia coli MS
85-1]
gi|315287611|gb|EFU47017.1| transcriptional repressor activity CueR [Escherichia coli MS
110-3]
gi|315291158|gb|EFU50521.1| transcriptional repressor activity CueR [Escherichia coli MS
153-1]
gi|315296282|gb|EFU55588.1| transcriptional repressor activity CueR [Escherichia coli MS
16-3]
gi|320175185|gb|EFW50295.1| Cold shock protein CspG [Shigella dysenteriae CDC 74-1112]
gi|320178568|gb|EFW53533.1| Cold shock protein CspG [Shigella boydii ATCC 9905]
gi|320187200|gb|EFW61901.1| Cold shock protein CspG [Shigella flexneri CDC 796-83]
gi|320192513|gb|EFW67155.1| Cold shock protein CspG [Escherichia coli O157:H7 str. EC1212]
gi|320196522|gb|EFW71145.1| Cold shock protein CspG [Escherichia coli WV_060327]
gi|320200218|gb|EFW74806.1| Cold shock protein CspG [Escherichia coli EC4100B]
gi|320637857|gb|EFX07649.1| cold shock protein CspG [Escherichia coli O157:H7 str. G5101]
gi|320642982|gb|EFX12183.1| cold shock protein CspG [Escherichia coli O157:H- str. 493-89]
gi|320648439|gb|EFX17094.1| cold shock protein CspG [Escherichia coli O157:H- str. H 2687]
gi|320653756|gb|EFX21830.1| cold shock protein CspG [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320659598|gb|EFX27161.1| cold shock protein CspG [Escherichia coli O55:H7 str. USDA 5905]
gi|320664369|gb|EFX31520.1| cold shock protein CspG [Escherichia coli O157:H7 str. LSU-61]
gi|323157489|gb|EFZ43599.1| cold shock-like protein cspG [Escherichia coli EPECa14]
gi|323158184|gb|EFZ44278.1| cold shock-like protein cspG [Escherichia coli E128010]
gi|323165477|gb|EFZ51264.1| cold shock-like protein cspG [Shigella sonnei 53G]
gi|323174903|gb|EFZ60518.1| cold shock-like protein cspG [Escherichia coli LT-68]
gi|323175877|gb|EFZ61471.1| cold shock-like protein cspG [Escherichia coli 1180]
gi|323185302|gb|EFZ70666.1| cold shock-like protein cspG [Escherichia coli 1357]
gi|323379166|gb|ADX51434.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323938094|gb|EGB34356.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323942904|gb|EGB39069.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323947221|gb|EGB43229.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323953315|gb|EGB49181.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|323958282|gb|EGB53991.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|323962875|gb|EGB58450.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323967237|gb|EGB62661.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|323973135|gb|EGB68327.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|323976631|gb|EGB71719.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
gi|324009920|gb|EGB79139.1| transcriptional repressor activity CueR [Escherichia coli MS
57-2]
gi|324013378|gb|EGB82597.1| transcriptional repressor activity CueR [Escherichia coli MS
60-1]
gi|324019120|gb|EGB88339.1| transcriptional repressor activity CueR [Escherichia coli MS
117-3]
gi|324117147|gb|EGC11055.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|326338568|gb|EGD62395.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1125]
gi|326347791|gb|EGD71507.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1044]
gi|327253387|gb|EGE65025.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
gi|330910756|gb|EGH39266.1| cold shock protein CspG [Escherichia coli AA86]
gi|331038319|gb|EGI10539.1| conserved domain protein [Escherichia coli H736]
gi|331044996|gb|EGI17123.1| conserved domain protein [Escherichia coli M605]
gi|331050292|gb|EGI22350.1| conserved domain protein [Escherichia coli M718]
gi|331055298|gb|EGI27307.1| conserved domain protein [Escherichia coli TA206]
gi|331060819|gb|EGI32783.1| conserved domain protein [Escherichia coli TA143]
gi|331064966|gb|EGI36861.1| conserved domain protein [Escherichia coli TA271]
gi|331070167|gb|EGI41533.1| conserved domain protein [Escherichia coli TA280]
gi|331075469|gb|EGI46767.1| conserved domain protein [Escherichia coli H591]
gi|331080126|gb|EGI51305.1| conserved domain protein [Escherichia coli H299]
gi|332092462|gb|EGI97535.1| cold shock-like protein cspG [Shigella boydii 5216-82]
gi|332093343|gb|EGI98401.1| cold shock-like protein cspG [Shigella boydii 3594-74]
gi|332095879|gb|EGJ00886.1| cold shock-like protein cspG [Shigella dysenteriae 155-74]
gi|332102180|gb|EGJ05526.1| cold shock protein CspG [Shigella sp. D9]
gi|332342432|gb|AEE55766.1| cold shock-like protein CspG [Escherichia coli UMNK88]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H +A+ S L E Q V + Q G
Sbjct: 6 TGLVKWFNADKGFGFITPDD---GSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR-G 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVVTL 70
>gi|229085316|ref|ZP_04217558.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
gi|228698035|gb|EEL50778.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V+++ +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVED----GNDVFVHFSAITGDGFKSLDEGQEVSFEVEDGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|222054676|ref|YP_002537038.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
gi|221563965|gb|ACM19937.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G+DVF+H S++ G +L EGQ VT+D +Q
Sbjct: 1 MAKGVVKWFNDAKGFGFIEQEN----GEDVFVHFSSIQGDGFKSLAEGQAVTFDVIQGAK 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVNK 65
>gi|320353121|ref|YP_004194460.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
DSM 2032]
gi|320121623|gb|ADW17169.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
DSM 2032]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G DVF+H SA+ + G +L EG+ V+++ V + A
Sbjct: 1 MAEGTVKWFNDSKGFGFIAQD----GGKDVFVHHSAIQADGFKSLQEGERVSFNVV-DGA 55
Query: 62 NGKYSAENLKL 72
G +A +K
Sbjct: 56 KGPAAANVIKK 66
>gi|259418670|ref|ZP_05742587.1| conserved domain protein [Silicibacter sp. TrichCH4B]
gi|259344892|gb|EEW56746.1| conserved domain protein [Silicibacter sp. TrichCH4B]
Length = 68
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI EG + +DVF+H SAV +GL L +GQ VT++ Q+
Sbjct: 1 MANGTVKWFNSTKGYGFIAVEGRS---NDVFVHISAVERSGLTGLADGQAVTFEI-QSGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA +L+L
Sbjct: 57 DGRESASDLQL 67
>gi|15617086|ref|NP_240299.1| cold shock protein CspE [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|21672738|ref|NP_660805.1| cold shock protein CspE [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|219681838|ref|YP_002468224.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682393|ref|YP_002468777.1| cold shock protein E [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471542|ref|ZP_05635541.1| cold shock protein CspE [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|54036912|sp|P63237|CSPE_BUCAI RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|54036913|sp|P63238|CSPE_BUCAP RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|25296105|pir||A84987 cold shock-like protein cspE [imported] - Buchnera sp. (strain
APS)
gi|10039151|dbj|BAB13185.1| cold shock-like protein cspE [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|21623383|gb|AAM68016.1| cold shock like protein CspE [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|219622126|gb|ACL30282.1| cold shock protein E [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624681|gb|ACL30836.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|311086213|gb|ADP66295.1| cold shock protein CspE [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086791|gb|ADP66872.1| cold shock protein CspE [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087378|gb|ADP67458.1| cold shock protein CspE [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087874|gb|ADP67953.1| cold shock protein CspE [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++ +
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|225181192|ref|ZP_03734638.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225168161|gb|EEG76966.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI G+DVF+H SA+ + G L EGQ V +D V+ + G
Sbjct: 2 QGKVKWFNAEKGFGFIER----PDGEDVFVHFSAIQAEGFKTLEEGQDVEFDVVEGNR-G 56
Query: 64 KYSAENLKL 72
+A +++
Sbjct: 57 PQAANVVRI 65
>gi|194014976|ref|ZP_03053593.1| conserved domain protein [Bacillus pumilus ATCC 7061]
gi|194014002|gb|EDW23567.1| conserved domain protein [Bacillus pumilus ATCC 7061]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 MLEGKVKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQAANVNK 65
>gi|161505814|ref|YP_001572926.1| major cold shock protein [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867161|gb|ABX23784.1| hypothetical protein SARI_03990 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAGNV 67
>gi|291550100|emb|CBL26362.1| cold-shock DNA-binding protein family [Ruminococcus torques
L2-14]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI S G+D+F+H S + G +L EGQ V ++ +
Sbjct: 2 TGTVKWFNNQKGYGFI----SDAEGNDIFVHYSGLVMDGFKSLEEGQAVEFEVTEGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAVNVVKL 65
>gi|218902331|ref|YP_002450165.1| cold shock protein CspA [Bacillus cereus AH820]
gi|218538225|gb|ACK90623.1| cold shock protein CspA [Bacillus cereus AH820]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ + +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVXKL 67
>gi|73663810|ref|YP_302589.1| cold shock protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72496387|dbj|BAE19644.1| cold shock protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G D+F+H S + + G +L EGQ V +D +
Sbjct: 1 MNNGTVKWFNAEKGFGFIEREN----GSDLFVHFSGIVAEGYKSLEEGQKVEFDITEGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--EQATNV 63
>gi|15606511|ref|NP_213891.1| cold shock protein [Aquifex aeolicus VF5]
gi|6225213|sp|O67327|CSP_AQUAE RecName: Full=Cold shock-like protein
gi|2983729|gb|AAC07291.1| cold shock protein [Aquifex aeolicus VF5]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M RG++KW++ DKGYGFIT E + DVF+H + + G L +GQ V +D V++
Sbjct: 1 MSFRGTVKWFSKDKGYGFITRED---TNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDT 57
Query: 61 ANGKYSAENLKLVPK 75
+ A+N++++ +
Sbjct: 58 KGPR--AKNVRVLGE 70
>gi|86146448|ref|ZP_01064771.1| cold shock-like protein CspD [Vibrio sp. MED222]
gi|85835711|gb|EAQ53846.1| cold shock-like protein CspD [Vibrio sp. MED222]
Length = 73
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---EDGDIFAHYSTIQMEGYRTLKAGQQVDYEVESGPK 57
Query: 62 NGKYSAENLKLVPKSS 77
A ++ V S+
Sbjct: 58 G--SHASSVVPVEGSA 71
>gi|24374322|ref|NP_718365.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
gi|113970742|ref|YP_734535.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-4]
gi|114047969|ref|YP_738519.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-7]
gi|117921010|ref|YP_870202.1| cold-shock DNA-binding protein family protein [Shewanella sp.
ANA-3]
gi|24348871|gb|AAN55809.1|AE015718_1 cold shock domain family protein [Shewanella oneidensis MR-1]
gi|113885426|gb|ABI39478.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
gi|113889411|gb|ABI43462.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
gi|117613342|gb|ABK48796.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 60 -PQAENVTVI 68
>gi|289423507|ref|ZP_06425308.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
gi|289156009|gb|EFD04673.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
Length = 66
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI+ +G DVF+H SA+ G +L EGQ V ++ V
Sbjct: 1 MKVGVVKWFNNEKGFGFISVDGEN----DVFVHFSAIQGDGYKSLEEGQQVEFEIVDGSK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--PQAANVTRV 66
>gi|198282878|ref|YP_002219199.1| cold-shock DNA-binding domain-containing protein
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666777|ref|YP_002425079.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247399|gb|ACH82992.1| cold-shock DNA-binding domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518990|gb|ACK79576.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE +DVF+H SA+ G L EG+ V ++ +
Sbjct: 1 MAVGTVKWFNDSKGFGFITPED---GKEDVFVHHSAIEGTGFKTLAEGERVNFEVTRGPK 57
Query: 62 NGKYSAENLK 71
AE ++
Sbjct: 58 G--LQAEKVR 65
>gi|160901501|ref|YP_001567082.1| cold-shock DNA-binding domain-containing protein [Petrotoga
mobilis SJ95]
gi|160359145|gb|ABX30759.1| cold-shock DNA-binding domain protein [Petrotoga mobilis SJ95]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++ KGYGFIT E G+DVF+H SAV G L E Q V ++ V+ D
Sbjct: 2 KGKVKWFDSKKGYGFITGED----GNDVFVHFSAVQMDGYRKLEEDQEVEFEVVEGDKG- 56
Query: 64 KYSAENLKLV 73
A N++ +
Sbjct: 57 -PQASNVRPL 65
>gi|16262519|ref|NP_435312.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
gi|307300737|ref|ZP_07580512.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307319148|ref|ZP_07598578.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|14523127|gb|AAK64724.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
gi|306895255|gb|EFN26011.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306904271|gb|EFN34856.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ ++ EGQ + ++ +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIAPDD---GSADVFVHISAVERAGMNSIVEGQKLGFELERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKMSAGQLR 67
>gi|91229059|ref|ZP_01262885.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01]
gi|262394729|ref|YP_003286583.1| cold shock protein CspD [Vibrio sp. Ex25]
gi|269967652|ref|ZP_06181702.1| cold shock-like protein CspD [Vibrio alginolyticus 40B]
gi|91187452|gb|EAS73792.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01]
gi|262338323|gb|ACY52118.1| cold shock protein CspD [Vibrio sp. Ex25]
gi|269827739|gb|EEZ82023.1| cold shock-like protein CspD [Vibrio alginolyticus 40B]
Length = 72
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEIEKGPK 57
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 58 G--CHASSVVPLE 68
>gi|134295036|ref|YP_001118771.1| cold-shock DNA-binding protein family protein [Burkholderia
vietnamiensis G4]
gi|134138193|gb|ABO53936.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
G4]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMEGFKTLKENQRVSFEVKVGPK 57
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 58 GK--QAANIQ 65
>gi|326796216|ref|YP_004314036.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
gi|326546980|gb|ADZ92200.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
Length = 70
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G DVF+H A+ G +L EGQ VT++ Q
Sbjct: 8 GIVKWFNDEKGFGFIERE----GGPDVFVHFRAINGTGRRSLQEGQKVTFEVTQGQKG-- 61
Query: 65 YSAENLKLV 73
AEN+ +V
Sbjct: 62 PQAENVTVV 70
>gi|226330749|ref|ZP_03806267.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
gi|225201544|gb|EEG83898.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITPE + G+D+F H S + G L GQ V Y ++
Sbjct: 1 METGTVKWFNNAKGFGFITPE---KGGEDIFAHYSTIRMEGYRTLKAGQKVNYSTIKGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|15596356|ref|NP_249850.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|116049091|ref|YP_792107.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|152986008|ref|YP_001349574.1| cold-shock protein [Pseudomonas aeruginosa PA7]
gi|218892877|ref|YP_002441746.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|254234293|ref|ZP_04927616.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719]
gi|254239529|ref|ZP_04932851.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192]
gi|296390471|ref|ZP_06879946.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
gi|313106131|ref|ZP_07792386.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
gi|9947082|gb|AAG04548.1|AE004546_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|115584312|gb|ABJ10327.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126166224|gb|EAZ51735.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719]
gi|126192907|gb|EAZ56970.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192]
gi|150961166|gb|ABR83191.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
gi|218773105|emb|CAW28917.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|310878888|gb|EFQ37482.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
Length = 69
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI + SG DVF+H A+ G +L EGQ V + +Q
Sbjct: 7 GTVKWFNDAKGYGFIQRD----SGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQKG-- 60
Query: 65 YSAENLKLV 73
AE++ V
Sbjct: 61 LQAEDVSKV 69
>gi|260655196|ref|ZP_05860684.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
gi|260630118|gb|EEX48312.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
Length = 65
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFIT E G DVF+H SA+ G +L E V +D V+ +
Sbjct: 2 KGTVKWFNATKGYGFITTE----EGKDVFVHFSAINMTGYKSLDENDSVEFDVVEGEKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|222149268|ref|YP_002550225.1| cold shock protein [Agrobacterium vitis S4]
gi|221736252|gb|ACM37215.1| cold shock protein [Agrobacterium vitis S4]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H S++ +L EG V+++ Q+
Sbjct: 1 MPTGTVKFFNDDKGFGFITPEN---GGTDVFVHVSSLQRG--DSLREGDKVSFEIGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67
>gi|94971209|ref|YP_593257.1| cold-shock DNA-binding protein family protein [Candidatus
Koribacter versatilis Ellin345]
gi|94553259|gb|ABF43183.1| cold-shock DNA-binding protein family [Candidatus Koribacter
versatilis Ellin345]
Length = 67
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFI +G+DVF+H SA+ G L EG+ V +D ++
Sbjct: 1 MREKGTVKWFNGAKGYGFIQR----STGEDVFVHFSAIQENGYRTLNEGETVEFDLLKGP 56
Query: 61 ANGKYSAENL 70
+ A N+
Sbjct: 57 KG--FQAANV 64
>gi|310778745|ref|YP_003967078.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
gi|309748068|gb|ADO82730.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT E G DVF H S + G +L EG+ VT++ +
Sbjct: 1 MANGTVKWFNAEKGFGFITSED----GTDVFAHFSEIQKDGFKSLEEGEQVTFEITKGQK 56
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 57 G--PQASNIKTV 66
>gi|307298799|ref|ZP_07578601.1| cold-shock DNA-binding domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915224|gb|EFN45609.1| cold-shock DNA-binding domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V ++
Sbjct: 2 TGTVKWFNGTKGYGFITKDD----GGDVFVHFSAIEMDGFKTLDEGQRVEFEVEDGPKG- 56
Query: 64 KYSAENLKL 72
A +++
Sbjct: 57 -PQAAKVRI 64
>gi|255263028|ref|ZP_05342370.1| conserved domain protein [Thalassiobium sp. R2A62]
gi|255105363|gb|EET48037.1| conserved domain protein [Thalassiobium sp. R2A62]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+DVF+H SAV +G+ L + Q V ++ +
Sbjct: 1 MASGTVKWFNTTKGFGFIAPDD---GGNDVFVHISAVERSGMTGLADDQKVEFELEEG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ A NLK V
Sbjct: 57 DGRQMAGNLKAV 68
>gi|126173937|ref|YP_001050086.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS155]
gi|153000230|ref|YP_001365911.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS185]
gi|160874863|ref|YP_001554179.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS195]
gi|217973821|ref|YP_002358572.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS223]
gi|304409808|ref|ZP_07391428.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
gi|307304164|ref|ZP_07583917.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
gi|125997142|gb|ABN61217.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
gi|151364848|gb|ABS07848.1| putative cold-shock DNA-binding domain protein [Shewanella
baltica OS185]
gi|160860385|gb|ABX48919.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
gi|217498956|gb|ACK47149.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
gi|304352326|gb|EFM16724.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
gi|306913062|gb|EFN43485.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
gi|315267099|gb|ADT93952.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +V
Sbjct: 60 -PQAENVTIV 68
>gi|54293420|ref|YP_125835.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens]
gi|53753252|emb|CAH14699.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens]
Length = 77
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD + +
Sbjct: 1 MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVINGER 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ + +++
Sbjct: 58 G--LHASNVIALSENAE 72
>gi|95929679|ref|ZP_01312421.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
gi|95134376|gb|EAT16033.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ GS+KW+N KG+GFI + G DVF+H SA+ G +L EG V++D
Sbjct: 1 MAEGSVKWFNDSKGFGFIEQDN----GPDVFVHFSAIQGDGFKSLAEGDRVSFDVTDGQK 56
Query: 62 NGKYSAENLKLV 73
+ N++ +
Sbjct: 57 G--PQSANVRRI 66
>gi|330502376|ref|YP_004379245.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
gi|328916662|gb|AEB57493.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina NK-01]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITP +SGDD+F+H A+ S G L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKTLKEGQQVSFVATRGQK 59
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 60 G--MQAEEVQVI 69
>gi|269139181|ref|YP_003295882.1| cold shock protein [Edwardsiella tarda EIB202]
gi|267984842|gb|ACY84671.1| cold shock protein [Edwardsiella tarda EIB202]
gi|304559100|gb|ADM41764.1| Cold shock protein [Edwardsiella tarda FL6-60]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP DVF+H SA+ + G L EGQ V + Q+
Sbjct: 4 KTGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQNDGFKTLAEGQQVEFSI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A+ + L
Sbjct: 60 GPAAADVVAL 69
>gi|209886327|ref|YP_002290184.1| putative cold-shock' DNA-binding domain [Oligotropha
carboxidovorans OM5]
gi|209874523|gb|ACI94319.1| putative cold-shock' DNA-binding domain [Oligotropha
carboxidovorans OM5]
Length = 71
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL NL EGQ +T++ +
Sbjct: 1 MAMTGTVKFFNAERGYGFIKPDD---GGRDVFVHITAVERAGLKNLVEGQQITFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 KGKGPKAVNLVV 69
>gi|297583376|ref|YP_003699156.1| cold-shock DNA-binding domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297141833|gb|ADH98590.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
MLS10]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+
Sbjct: 2 QGKVKWFNAEKGFGFIERED----GEDVFVHYSAIDQEGFKTLDEGQDVEFEVVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQASNVVKL 65
>gi|209809774|ref|YP_002265313.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238]
gi|208011337|emb|CAQ81788.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 60
Query: 63 GKYSAENL 70
A N+
Sbjct: 61 --PQAANV 66
>gi|187251844|ref|YP_001876326.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium
minutum Pei191]
gi|186972004|gb|ACC98989.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum
Pei191]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G IKW+N KGYGF+TPE D+F+H + G L EGQ V +D +++
Sbjct: 1 MAQGKIKWFNDQKGYGFVTPED---GSADLFVHYQEIQGEGFKTLAEGQAVEFDVAKSEK 57
Query: 62 NGKYSAENLKLV 73
K A N++ +
Sbjct: 58 GPK--ATNVRKI 67
>gi|92115994|ref|YP_575723.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91798888|gb|ABE61263.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 73
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N
Sbjct: 8 ATGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN--R 62
Query: 63 GKYSAENLKL 72
GK SAE+L++
Sbjct: 63 GKESAEDLRV 72
>gi|328545836|ref|YP_004305945.1| cold shock transcription regulator [polymorphum gilvum
SL003B-26A1]
gi|326415576|gb|ADZ72639.1| Probable cold shock transcription regulator [Polymorphum gilvum
SL003B-26A1]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI PE DVF+H SAV +G+ L EGQ V ++ Q D
Sbjct: 1 MKTGTVKFFNGQKGFGFIQPED---GSRDVFVHISAVERSGIGRLDEGQKVQFELEQ-DR 56
Query: 62 NGKYSAENLKLV 73
G+ SA NL+L+
Sbjct: 57 QGRSSAANLQLL 68
>gi|329934360|ref|ZP_08284439.1| cold shock protein [Streptomyces griseoaurantiacus M045]
gi|329305956|gb|EGG49811.1| cold shock protein [Streptomyces griseoaurantiacus M045]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI+ G DVF H S + +G LTEG+ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFISQND---GGPDVFAHYSEINGSGYRELTEGEQVTFDIGQGQK 57
Query: 62 NGKYSAENLK 71
A+N+
Sbjct: 58 G--PQAQNIT 65
>gi|160880077|ref|YP_001559045.1| cold-shock DNA-binding domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160428743|gb|ABX42306.1| cold-shock DNA-binding domain protein [Clostridium
phytofermentans ISDg]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI+ E G+DVF+H S +A G L +GQ VT++
Sbjct: 1 MKKGTVKWFNSQKGFGFISDE----QGNDVFVHYSGLAMDGFKTLEDGQSVTFEVTTGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAVNV 63
>gi|152997616|ref|YP_001342451.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150838540|gb|ABR72516.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G DVF+H ++ +G L EGQ VT++ Q
Sbjct: 8 GIVKWFNDEKGFGFIERE----GGPDVFVHFRSINGSGRRTLQEGQKVTFEVTQGQKG-- 61
Query: 65 YSAENLKLV 73
AEN+ V
Sbjct: 62 PQAENVTPV 70
>gi|115522947|ref|YP_779858.1| cold-shock DNA-binding domain-containing protein
[Rhodopseudomonas palustris BisA53]
gi|115516894|gb|ABJ04878.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N ++GYGFI P+ G DVF+H +AV AGL +L EGQ ++++ +
Sbjct: 1 MAMTGTVKFFNGERGYGFIKPDD---GGRDVFVHITAVERAGLKDLIEGQRISFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A NL +
Sbjct: 58 KGKGPKAVNLVI 69
>gi|291517937|emb|CBK73158.1| cold-shock DNA-binding protein family [Butyrivibrio fibrisolvens
16/4]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI+ E G DVF+H S + S G L EG V Y+
Sbjct: 1 MSKGTVKWFNNSKGYGFISDE----EGKDVFVHFSGINSEGFKTLEEGATVEYEVTDGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +V
Sbjct: 57 G--PQAVNVTVV 66
>gi|261493105|ref|ZP_05989643.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494856|ref|ZP_05991333.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309480|gb|EEY10706.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261311240|gb|EEY12405.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 72
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + D+F H S + + G +L GQ V ++ VQ +
Sbjct: 1 MDIGIVKWFNNVKGFGFITSDVCEG---DIFAHFSEIQAEGYRSLKVGQKVQFELVQGER 57
Query: 62 NGKYSAENLKLVPKSS 77
SA N+ + + +
Sbjct: 58 G--ASASNITPISEKT 71
>gi|254495825|ref|ZP_05108737.1| cold shock protein CspD [Legionella drancourtii LLAP12]
gi|254354982|gb|EET13605.1| cold shock protein CspD [Legionella drancourtii LLAP12]
Length = 76
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KG+GFI PE + GDD+F+H SA+ +G L GQ+VTYD Q D
Sbjct: 1 MARGEVKWFNNAKGWGFIIPE---QGGDDIFVHFSAIHGSGYKTLVPGQMVTYDVGQGDK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ + + +
Sbjct: 58 G--LHAANVLVATEDAE 72
>gi|127512097|ref|YP_001093294.1| cold-shock DNA-binding domain-containing protein [Shewanella
loihica PV-4]
gi|126637392|gb|ABO23035.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N DKG+GFI G DVF+H A+ S G L EGQ VT+D Q
Sbjct: 4 TTGTVKWFNEDKGFGFIEQAN---GGADVFVHFRAIVSDGYKTLAEGQKVTFDIEQGQKG 60
Query: 63 GKYSAENL 70
A N+
Sbjct: 61 --LQAANV 66
>gi|332996322|gb|EGK15949.1| cold shock-like protein cspG [Shigella flexneri VA-6]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNYGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENLK 71
+A N+
Sbjct: 62 -PAAGNVT 68
>gi|253573284|ref|ZP_04850627.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846812|gb|EES74817.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V ++ + G
Sbjct: 2 KGTVKWFNAEKGYGFIQVE----GGEDVFVHFSAIQGEGFKTLEEGQAVEFEIT-DGNRG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|197117779|ref|YP_002138206.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|197087139|gb|ACH38410.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E GDDVF H SA+ G +L EG VT+D V+
Sbjct: 1 MANGTVKWFNDSKGFGFLEQEN----GDDVFCHFSAITGEGFKSLVEGDSVTFDVVRGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|310815277|ref|YP_003963241.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
gi|308754012|gb|ADO41941.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG G DVF+H SAV AGL L++ Q VT+D ++
Sbjct: 1 MPNGTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVEQAGLTGLSDDQKVTFDLIEG-R 56
Query: 62 NGKYSAENLKL 72
+G+ A NLK
Sbjct: 57 DGRQMAGNLKP 67
>gi|310829807|ref|YP_003962164.1| cold-shock protein [Eubacterium limosum KIST612]
gi|308741541|gb|ADO39201.1| cold-shock protein [Eubacterium limosum KIST612]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFI+ E GDDVF+H S++ G L EG V++D Q
Sbjct: 1 MNNGTVKWFNSDKGFGFISRE----EGDDVFVHFSSIMGGGFKTLNEGDKVSFDIEQGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 G--LQASNVSVI 66
>gi|326789294|ref|YP_004307115.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
gi|326540058|gb|ADZ81917.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI+ E GDDVF+H SA+ G +L EGQ V +D +
Sbjct: 2 TGTVKWFNAEKGFGFISRE----GGDDVFVHFSAIQGDGFKSLEEGQAVNFDITKGPRG- 56
Query: 64 KYSAENLK 71
AEN+
Sbjct: 57 -AQAENVT 63
>gi|220931393|ref|YP_002508301.1| putative cold-shock DNA-binding domain protein [Halothermothrix
orenii H 168]
gi|219992703|gb|ACL69306.1| putative cold-shock DNA-binding domain protein [Halothermothrix
orenii H 168]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+++ G +KW++ KG+GFI E GDDVF+H SA+ G +L EGQ V ++ VQ D
Sbjct: 2 IIYNGKVKWFSDKKGFGFIEREA----GDDVFVHFSAIQKEGFKSLDEGQEVEFEVVQGD 57
Query: 61 ANGKYSAENLKL 72
G +A + L
Sbjct: 58 R-GPQAANVVTL 68
>gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
25827]
gi|188020731|gb|EDU58771.1| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
25827]
Length = 85
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ AG L EGQ V +
Sbjct: 21 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGAGFKTLAEGQQVEFTIENGAKG- 76
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 77 -PAAANVTAI 85
>gi|150377277|ref|YP_001313872.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150031824|gb|ABR63939.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ ++ EGQ + ++ +++
Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDD---GSADVFVHISAVERAGMNSIVEGQKLGFELERDNK 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKMSAGQLR 67
>gi|27904911|ref|NP_778037.1| cold shock protein CspE [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|38372204|sp|Q89A90|CSPE_BUCBP RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|27904309|gb|AAO27142.1| cold shock protein CspA [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L+EGQ V ++ +
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|283787799|ref|YP_003367664.1| cold shock protein [Citrobacter rodentium ICC168]
gi|282951253|emb|CBG90947.1| cold shock protein [Citrobacter rodentium ICC168]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAGNV 67
>gi|189426058|ref|YP_001953235.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
gi|189422317|gb|ACD96715.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF H SA+ G +L EG VT++ +
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFCHFSAITGEGFKSLAEGDRVTFEVTKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQASNVTRI 66
>gi|146306439|ref|YP_001186904.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina ymp]
gi|145574640|gb|ABP84172.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITP +SGDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFVATRGQK 59
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 60 G--MQAEEVQVI 69
>gi|148652578|ref|YP_001279671.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
sp. PRwf-1]
gi|148571662|gb|ABQ93721.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
Length = 71
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N KG+GFI E SG+D+F+H A+ G +L +GQ V + + +
Sbjct: 4 REQGTVKWFNDAKGFGFIQRE----SGEDIFVHFRAIQGDGYRSLQDGQKVEFIVTEGEK 59
Query: 62 NGKYSAENLKLVPK 75
AE + V
Sbjct: 60 G--LQAEEVTKVDA 71
>gi|325263738|ref|ZP_08130471.1| conserved domain protein [Clostridium sp. D5]
gi|324030776|gb|EGB92058.1| conserved domain protein [Clostridium sp. D5]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI S G+DVF+H S + G +L EGQ V +D
Sbjct: 2 TGTVKWFNNQKGYGFI----SDSEGNDVFVHYSGLMMDGFKSLEEGQAVEFDVTDGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAVNVTKL 65
>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
HTCC2255]
gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
HTCC2255]
Length = 531
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ WYNP KG GFI P+ + GDDVF+H SA+ ++GL + EG ++TY+ + ++
Sbjct: 1 MLTGTVIWYNPVKGLGFINPD---QGGDDVFVHMSALKASGLKVVKEGDMLTYELLLDEK 57
Query: 62 NGKYSAENLKLVPK 75
GK +A N+ ++ K
Sbjct: 58 TGKKAASNVTILKK 71
>gi|330504702|ref|YP_004381571.1| cold-shock domain-containing protein [Pseudomonas mendocina
NK-01]
gi|328918988|gb|AEB59819.1| cold-shock domain-containing protein [Pseudomonas mendocina
NK-01]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ V++ VQ
Sbjct: 4 RQNGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVSFVAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 60 G--MQADQVQIL 69
>gi|284007908|emb|CBA73854.1| cold shock-like protein [Arsenophonus nasoniae]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G+D+F H S++ G L GQ V + +
Sbjct: 1 METGTVKWFNNAKGFGFICPEN---GGEDIFAHYSSIQMEGYRTLKAGQKVNFSSTKGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|228992244|ref|ZP_04152177.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
gi|228998299|ref|ZP_04157894.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|229005782|ref|ZP_04163480.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
gi|228755458|gb|EEM04805.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
gi|228761451|gb|EEM10402.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|228767497|gb|EEM16127.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|226531123|ref|NP_001151606.1| LOC100285240 [Zea mays]
gi|195638850|gb|ACG38893.1| glycine-rich protein 2b [Zea mays]
Length = 208
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFITP+ +D+F+H+S++ S G +L +G V Y + +G+
Sbjct: 8 GTVKWFNGTKGFGFITPDD---GSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGR 63
Query: 65 YSAENLK 71
A ++
Sbjct: 64 AKALDVT 70
>gi|195609518|gb|ACG26589.1| glycine-rich protein 2b [Zea mays]
Length = 208
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFITP+ +D+F+H+S++ S G +L +G V Y + +G+
Sbjct: 8 GTVKWFNGTKGFGFITPDD---GSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGR 63
Query: 65 YSAENLK 71
A ++
Sbjct: 64 AKALDVT 70
>gi|114704723|ref|ZP_01437631.1| cold shock protein [Fulvimarina pelagi HTCC2506]
gi|114539508|gb|EAU42628.1| cold shock protein [Fulvimarina pelagi HTCC2506]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+IK++N KG+GF+TPEG DVFLH SA+ +G+ ++ EG +T+D +
Sbjct: 1 MSQTGTIKFFNESKGFGFVTPEG---GSKDVFLHISALERSGISSVQEGDKITFDTEPDP 57
Query: 61 ANGKYSAENLKL 72
A N++L
Sbjct: 58 RGKGPKAVNIQL 69
>gi|323702916|ref|ZP_08114574.1| cold-shock DNA-binding domain protein [Desulfotomaculum
nigrificans DSM 574]
gi|323532174|gb|EGB22055.1| cold-shock DNA-binding domain protein [Desulfotomaculum
nigrificans DSM 574]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E +G DVF+H SA+ + G L EGQLV +D V+ G
Sbjct: 2 QGKVKWFNANKGYGFIEAE----TGSDVFVHYSAIQAEGYRTLEEGQLVQFDIVEGAR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|297560839|ref|YP_003679813.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845287|gb|ADH67307.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ V+++ VQ
Sbjct: 4 RQTGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGTGFKSLQEGQTVSFEAVQGQK 59
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 60 G--MQADKVQV 68
>gi|109900034|ref|YP_663289.1| cold-shock DNA-binding domain-containing protein
[Pseudoalteromonas atlantica T6c]
gi|109702315|gb|ABG42235.1| cold-shock DNA-binding protein family [Pseudoalteromonas
atlantica T6c]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKG+GFITPE G D+F+H S + G L +GQ V ++ Q+
Sbjct: 1 MSQGTVKWFNADKGFGFITPED---GGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQSP 57
Query: 61 ANGKYSAENLKLV 73
A N+ V
Sbjct: 58 KG--PCANNVVPV 68
>gi|270055541|gb|ACZ59034.1| cold-shock protein C [Staphylococcus aureus]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFI + + DVF+H S +A G +L EGQ V +D V+
Sbjct: 1 MNNGTVKWFNADKGFGFIERDNDS----DVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--EQATNVVAI 66
>gi|284989393|ref|YP_003407947.1| cold-shock DNA-binding domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062638|gb|ADB73576.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 131
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+NP+KG+GF++ E G DVF+H+ A+ +G L GQ V + V
Sbjct: 1 MPTGRVKWFNPEKGFGFLSRED----GPDVFVHKDAL-PSGTSELKPGQRVEFGIVAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++++ +
Sbjct: 56 GD--QALQVRVLDPLPS 70
>gi|56707866|ref|YP_169762.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110670337|ref|YP_666894.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115315074|ref|YP_763797.1| cold shock protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134301709|ref|YP_001121677.1| cold shock DNA-binding domain-containing protein [Francisella
tularensis subsp. tularensis WY96-3418]
gi|187931528|ref|YP_001891512.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224456944|ref|ZP_03665417.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254369526|ref|ZP_04985537.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp.
holarctica FSC022]
gi|254370361|ref|ZP_04986366.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874681|ref|ZP_05247391.1| cold shock protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|54113247|gb|AAV29257.1| NT02FT0936 [synthetic construct]
gi|56604358|emb|CAG45384.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320670|emb|CAL08767.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115129973|gb|ABI83160.1| cold shock protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134049486|gb|ABO46557.1| cold shock DNA-binding domain protein [Francisella tularensis
subsp. tularensis WY96-3418]
gi|151568604|gb|EDN34258.1| hypothetical protein FTBG_00121 [Francisella tularensis subsp.
tularensis FSC033]
gi|157122480|gb|EDO66615.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp.
holarctica FSC022]
gi|187712437|gb|ACD30734.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840680|gb|EET19116.1| cold shock protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159046|gb|ADA78437.1| cold shock DNA-binding domain protein [Francisella tularensis
subsp. tularensis NE061598]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI P+ G DVF+H SAV +AGL +L EG+ V+++ +N
Sbjct: 1 MRQGTVKFFNTSKGFGFIEPQD---GGKDVFVHISAVENAGLSSLREGEKVSFEVEEN-- 55
Query: 62 NGKYSAENLKLV 73
GK +A N+K +
Sbjct: 56 RGKMAAVNIKSI 67
>gi|84514337|ref|ZP_01001701.1| cold shock family protein [Loktanella vestfoldensis SKA53]
gi|84511388|gb|EAQ07841.1| cold shock family protein [Loktanella vestfoldensis SKA53]
Length = 80
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG DVF+H SAV +GL L + Q V +D +
Sbjct: 12 MASGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTGLKDNQKVNFDI-EASR 67
Query: 62 NGKYSAENLKL 72
+G+ SA NL L
Sbjct: 68 DGRESAVNLTL 78
>gi|313898450|ref|ZP_07831987.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2]
gi|312956832|gb|EFR38463.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKGYGFIT + G D+F+H S + ++G L EG V ++ ND
Sbjct: 1 MSTGKVKWFNADKGYGFITTDA----GQDLFVHYSEIQTSGFRTLEEGAKVNFEINTNDR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 GD--HAANVTVI 66
>gi|312114304|ref|YP_004011900.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311219433|gb|ADP70801.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 71
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFITP+ E G DVF+H SAV +G+ L EG VTY+ +
Sbjct: 1 MRQTGTVKFFNQAKGFGFITPD---EGGKDVFVHISAVERSGVGMLDEGMRVTYETQPDP 57
Query: 61 ANGKYSAENLK 71
A NL+
Sbjct: 58 KGKGPKAVNLE 68
>gi|253701491|ref|YP_003022680.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
gi|251776341|gb|ACT18922.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E GDDVF H SA+ G +L EG VT+D V+
Sbjct: 1 MANGTVKWFNDSKGFGFLEQEN----GDDVFCHFSAITGDGFKSLVEGDSVTFDVVKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVTRV 66
>gi|126642302|ref|YP_001085286.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|169633000|ref|YP_001706736.1| putative cold shock protein [Acinetobacter baumannii SDF]
gi|169795349|ref|YP_001713142.1| putative cold shock protein [Acinetobacter baumannii AYE]
gi|184158782|ref|YP_001847121.1| cold shock protein [Acinetobacter baumannii ACICU]
gi|213158664|ref|YP_002319962.1| cold-shock domain protein [Acinetobacter baumannii AB0057]
gi|215482883|ref|YP_002325086.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
gi|226952983|ref|ZP_03823447.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|239502878|ref|ZP_04662188.1| Cold shock-like protein cspG [Acinetobacter baumannii AB900]
gi|260550926|ref|ZP_05825132.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624]
gi|260554463|ref|ZP_05826684.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
gi|262278446|ref|ZP_06056231.1| cold shock domain-containing protein CspD [Acinetobacter
calcoaceticus RUH2202]
gi|293609548|ref|ZP_06691850.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|294650565|ref|ZP_06727922.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
19194]
gi|299769391|ref|YP_003731417.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
gi|301348039|ref|ZP_07228780.1| Cold shock-like protein cspG [Acinetobacter baumannii AB056]
gi|301510877|ref|ZP_07236114.1| Cold shock-like protein cspG [Acinetobacter baumannii AB058]
gi|301596796|ref|ZP_07241804.1| Cold shock-like protein cspG [Acinetobacter baumannii AB059]
gi|332850461|ref|ZP_08432781.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150]
gi|332871913|ref|ZP_08440325.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113]
gi|332875151|ref|ZP_08442984.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059]
gi|126388186|gb|ABO12684.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|169148276|emb|CAM86141.1| putative cold shock protein [Acinetobacter baumannii AYE]
gi|169151792|emb|CAP00613.1| putative cold shock protein [Acinetobacter baumannii]
gi|183210376|gb|ACC57774.1| Cold shock protein [Acinetobacter baumannii ACICU]
gi|213057824|gb|ACJ42726.1| cold-shock domain protein [Acinetobacter baumannii AB0057]
gi|213988402|gb|ACJ58701.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
gi|226836304|gb|EEH68687.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|260406053|gb|EEW99539.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624]
gi|260411005|gb|EEX04302.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
gi|262258797|gb|EEY77530.1| cold shock domain-containing protein CspD [Acinetobacter
calcoaceticus RUH2202]
gi|292823562|gb|EFF82408.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
19194]
gi|292828000|gb|EFF86363.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298699479|gb|ADI90044.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
gi|322507405|gb|ADX02859.1| cold shock protein [Acinetobacter baumannii 1656-2]
gi|323518697|gb|ADX93078.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715]
gi|325122817|gb|ADY82340.1| putative cold shock protein [Acinetobacter calcoaceticus PHEA-2]
gi|332730732|gb|EGJ62043.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150]
gi|332731127|gb|EGJ62428.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113]
gi|332736595|gb|EGJ67589.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + VQ
Sbjct: 4 REQGVVKWFNDTKGFGFIQR----NGGDDVFVHFRAIVGDGHRSLRDGQRVEFSVVQGQK 59
Query: 62 NGKYSAENLKLVP 74
+ AEN++ +
Sbjct: 60 G--FQAENVQPLD 70
>gi|222054862|ref|YP_002537224.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
gi|221564151|gb|ACM20123.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF+ E G+DVF+H SA+ G +LTEG VT+D +
Sbjct: 1 MEKGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAITGDGFKSLTEGDKVTFDVTRGPK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--LQAANVT 64
>gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L+EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPSD---GSKDVFVHFSAIQGNGFKTLSEGQSVEFEIQDGHKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVTAL 69
>gi|326204316|ref|ZP_08194175.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985591|gb|EGD46428.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI + G+DVF+H SA+ G L EG V +D V+
Sbjct: 1 MEKGRVKWFNAEKGFGFIERD----GGNDVFVHFSAINMDGYKTLEEGSEVVFDVVEGAK 56
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 57 G--PQAANVQ 64
>gi|239943237|ref|ZP_04695174.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|239989696|ref|ZP_04710360.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
gi|291446710|ref|ZP_06586100.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
gi|291349657|gb|EFE76561.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
Length = 127
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVDALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVVVLDPTPS 70
>gi|15894094|ref|NP_347443.1| cold shock protein [Clostridium acetobutylicum ATCC 824]
gi|15023696|gb|AAK78783.1|AE007596_4 Cold shock protein [Clostridium acetobutylicum ATCC 824]
gi|325508221|gb|ADZ19857.1| Cold shock protein [Clostridium acetobutylicum EA 2018]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+DVF H S + G L EGQ V+YD V+
Sbjct: 2 TGTVKWFNGEKGFGFITGED----GNDVFAHYSQINVDGYKTLEEGQKVSYDVVKGPKG- 56
Query: 64 KYSAENLKL 72
AEN+ L
Sbjct: 57 -LQAENITL 64
>gi|88800616|ref|ZP_01116177.1| cold-shock DNA-binding domain family protein [Reinekea sp.
MED297]
gi|88776671|gb|EAR07885.1| cold-shock DNA-binding domain family protein [Reinekea sp.
MED297]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI ++G DVF H SA+ +G L EGQ V + Q
Sbjct: 5 TGTVKWFNEAKGFGFIE----QQNGPDVFAHFSAITGSGFKTLAEGQKVEFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 60 -PQAENIVAI 68
>gi|109897864|ref|YP_661119.1| cold-shock DNA-binding domain-containing protein
[Pseudoalteromonas atlantica T6c]
gi|332307142|ref|YP_004434993.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|109700145|gb|ABG40065.1| cold-shock DNA-binding protein family [Pseudoalteromonas
atlantica T6c]
gi|332174471|gb|AEE23725.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H A+ G L EGQ V + Q
Sbjct: 4 TTGTVKWFNESKGFGFIQQEN----GPDVFAHFRAITGTGFKTLAEGQKVEFTVTQGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ ++
Sbjct: 60 --PQAENIVVL 68
>gi|119775105|ref|YP_927845.1| cold-shock DNA-binding domain-containing protein [Shewanella
amazonensis SB2B]
gi|119767605|gb|ABM00176.1| cold-shock DNA-binding protein family [Shewanella amazonensis
SB2B]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E G DVF+H A+ + G L EGQ V++ Q
Sbjct: 5 TGVVKWFNADKGFGFIAQEA----GPDVFVHFRAINTDGFKTLDEGQKVSFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 60 -PQAENVTVI 68
>gi|114562869|ref|YP_750382.1| cold-shock DNA-binding domain-containing protein [Shewanella
frigidimarina NCIMB 400]
gi|114334162|gb|ABI71544.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
NCIMB 400]
gi|149675700|dbj|BAF64729.1| cold shock protein [Shewanella livingstonensis]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +V
Sbjct: 60 -PQAENVSIV 68
>gi|294011151|ref|YP_003544611.1| cold shock protein CspA [Sphingobium japonicum UT26S]
gi|292674481|dbj|BAI95999.1| cold shock protein CspA [Sphingobium japonicum UT26S]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKGYGFI P+ D F+H SAV GL L E V+YD Q D
Sbjct: 1 MSIIGTVKFFNADKGYGFIAPDD---GSPDAFVHISAVERGGLATLREKDRVSYDLEQ-D 56
Query: 61 ANGKYSAENLK 71
GK +A N++
Sbjct: 57 KRGKMAAVNIQ 67
>gi|90581342|ref|ZP_01237138.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|90437452|gb|EAS62647.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|119116583|dbj|BAF40852.1| cold-shock protein CspV [Photobacterium phosphoreum]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|39995301|ref|NP_951252.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
gi|39982063|gb|AAR33525.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
gi|298504306|gb|ADI83029.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
KN400]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF H SA++ G +LTEG VT++ +
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFCHFSAISGDGFKSLTEGDRVTFEITKGPK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--LQAANVT 64
>gi|322382422|ref|ZP_08056325.1| major cold-shock protein RNA helicase co-factor RNA
co-chaperone-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153639|gb|EFX46018.1| major cold-shock protein RNA helicase co-factor RNA
co-chaperone-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ G
Sbjct: 2 QGKVKWFNAEKGYGFIERED----GGDVFVHFSAIQGEGFKTLEEGQSVEFDIVEGAR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|148378284|ref|YP_001252825.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
gi|153932083|ref|YP_001382685.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
gi|153937821|ref|YP_001386236.1| cold shock protein [Clostridium botulinum A str. Hall]
gi|153940157|ref|YP_001389651.1| cold shock protein [Clostridium botulinum F str. Langeland]
gi|168177625|ref|ZP_02612289.1| cold shock protein [Clostridium botulinum NCTC 2916]
gi|168182105|ref|ZP_02616769.1| cold shock protein [Clostridium botulinum Bf]
gi|170755331|ref|YP_001779935.1| cold shock protein [Clostridium botulinum B1 str. Okra]
gi|187777110|ref|ZP_02993583.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC
15579]
gi|226947506|ref|YP_002802597.1| cold shock protein [Clostridium botulinum A2 str. Kyoto]
gi|237793603|ref|YP_002861155.1| cold shock protein [Clostridium botulinum Ba4 str. 657]
gi|148287768|emb|CAL81834.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
gi|152928127|gb|ABS33627.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
gi|152933735|gb|ABS39234.1| cold shock protein [Clostridium botulinum A str. Hall]
gi|152936053|gb|ABS41551.1| cold shock protein [Clostridium botulinum F str. Langeland]
gi|169120543|gb|ACA44379.1| cold shock protein [Clostridium botulinum B1 str. Okra]
gi|182670885|gb|EDT82859.1| cold shock protein [Clostridium botulinum NCTC 2916]
gi|182674516|gb|EDT86477.1| cold shock protein [Clostridium botulinum Bf]
gi|187774038|gb|EDU37840.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC
15579]
gi|226842860|gb|ACO85526.1| cold shock protein [Clostridium botulinum A2 str. Kyoto]
gi|229261379|gb|ACQ52412.1| cold shock protein [Clostridium botulinum Ba4 str. 657]
gi|295317741|gb|ADF98118.1| cold shock protein [Clostridium botulinum F str. 230613]
gi|322804547|emb|CBZ02098.1| cold shock protein CspG [Clostridium botulinum H04402 065]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+DVF H S + S G +L EGQ V+YD V+
Sbjct: 2 NGTVKWFNGEKGFGFITGED----GNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITII 65
>gi|77362000|ref|YP_341574.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
gi|119470716|ref|ZP_01613384.1| Cold shock protein [Alteromonadales bacterium TW-7]
gi|332533004|ref|ZP_08408874.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
gi|76876911|emb|CAI89128.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
gi|119446186|gb|EAW27464.1| Cold shock protein [Alteromonadales bacterium TW-7]
gi|332037483|gb|EGI73936.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI E G DVF H SA+ S G L EGQ V + Q
Sbjct: 7 GTVKWFNESKGFGFIEQEN----GPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQGQKG-- 60
Query: 65 YSAENLKLV 73
A+N+ V
Sbjct: 61 PQADNITAV 69
>gi|168031977|ref|XP_001768496.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680209|gb|EDQ66647.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 178
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ + G+D+F+H++++ + G +L EG++V + ++ +
Sbjct: 3 ETGKVKWFNSSKGFGFITPD---KGGEDLFVHQTSIHAEGFRSLREGEVVEFQV-ESSED 58
Query: 63 GKYSAENLK 71
G+ A +
Sbjct: 59 GRTKALAVT 67
>gi|50084495|ref|YP_046005.1| putative cold shock protein [Acinetobacter sp. ADP1]
gi|49530471|emb|CAG68183.1| putative cold shock protein [Acinetobacter sp. ADP1]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + VQ
Sbjct: 4 REQGVVKWFNDTKGFGFIQR----NGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQK 59
Query: 62 NGKYSAENLKLVP 74
+ AEN++ +
Sbjct: 60 G--FQAENVQPLD 70
>gi|332295605|ref|YP_004437528.1| cold-shock DNA-binding domain protein [Thermodesulfobium
narugense DSM 14796]
gi|332178708|gb|AEE14397.1| cold-shock DNA-binding domain protein [Thermodesulfobium
narugense DSM 14796]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI+ + DVF+H SA+ G L +GQ V ++ V
Sbjct: 1 MFLGKVKWFNNEKGYGFISKDD---GSGDVFVHYSAIQGKGFRTLEQGQAVQFEIVDGPK 57
Query: 62 NGKYSAENLKLVP 74
A N+ V
Sbjct: 58 G--PQASNVTKVS 68
>gi|220930266|ref|YP_002507175.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum
H10]
gi|220000594|gb|ACL77195.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum
H10]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI + G+DVF+H SA+ G L EG V +D V+
Sbjct: 1 MEKGRVKWFNAEKGFGFIERD----GGNDVFVHFSAITMDGYKTLEEGSEVVFDVVEGAK 56
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 57 G--PQAANVQ 64
>gi|146281647|ref|YP_001171800.1| cold shock protein CapB [Pseudomonas stutzeri A1501]
gi|145569852|gb|ABP78958.1| cold shock protein CapB [Pseudomonas stutzeri A1501]
gi|327479894|gb|AEA83204.1| cold shock protein CapB [Pseudomonas stutzeri DSM 4166]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP +SGDD+F+H A+ G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFRAIQGDGFKSLKEGQQVSFVATRGQK 59
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 60 G--MQAEEVQVI 69
>gi|118443638|ref|YP_878429.1| cold shock protein -related protein [Clostridium novyi NT]
gi|168186566|ref|ZP_02621201.1| conserved domain protein [Clostridium botulinum C str. Eklund]
gi|118134094|gb|ABK61138.1| cold shock protein -related protein [Clostridium novyi NT]
gi|169295395|gb|EDS77528.1| conserved domain protein [Clostridium botulinum C str. Eklund]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+DVF H S + G L EGQ V++D V+
Sbjct: 2 TGTVKWFNAEKGFGFITTE----EGNDVFAHFSQINKDGFKTLEEGQNVSFDVVEGAKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENISVL 65
>gi|257790734|ref|YP_003181340.1| cold-shock DNA-binding domain-containing protein [Eggerthella
lenta DSM 2243]
gi|257474631|gb|ACV54951.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM
2243]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP+KGYGFI S + G+D+F+H S + G L EG V +D
Sbjct: 1 MAEGTVKWFNPEKGYGFI----SQKDGEDLFVHFSEIKMDGFKTLDEGSAVQFDVTTGQ- 55
Query: 62 NGKYSAENLKL 72
NGK A N+
Sbjct: 56 NGKLQASNVTK 66
>gi|71278580|ref|YP_269596.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H]
gi|71144320|gb|AAZ24793.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H]
Length = 72
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+D+F H S + G L GQ V Y+
Sbjct: 1 MAHGTVKWFNNAKGFGFIRPDS---GGEDIFAHYSTIEMDGYRTLKAGQDVDYELNDGPK 57
Query: 62 NGKYSAENLKL 72
+ A ++KL
Sbjct: 58 G--HHAASIKL 66
>gi|330817033|ref|YP_004360738.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli
BSR3]
gi|327369426|gb|AEA60782.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli
BSR3]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KG+GFITP+ G+D+F+H S + G +L + Q V Y+
Sbjct: 1 MNTGTVKWFNDAKGFGFITPDD---GGEDLFVHFSEIKITGFKSLYDNQRVRYEVRNGPK 57
Query: 62 NGKYSAENLKLV 73
A +++ V
Sbjct: 58 GK--HAADVQPV 67
>gi|153835791|ref|ZP_01988458.1| cold shock domain protein CspD [Vibrio harveyi HY01]
gi|148867479|gb|EDL66854.1| cold shock domain protein CspD [Vibrio harveyi HY01]
Length = 72
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEIEKGPK 57
Query: 62 NGKYSAENLKLVP 74
A ++ +
Sbjct: 58 G--SHASSVVPIE 68
>gi|323140506|ref|ZP_08075434.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
12067]
gi|322415074|gb|EFY05865.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
12067]
Length = 68
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G++KW+N KGYGFI +G +VF+H SA+ S G L EGQ V+Y +
Sbjct: 1 MLSIGTVKWFNNTKGYGFIEA----RNGQEVFVHFSAIRSDGYRCLQEGQRVSYHLSRGK 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 HG--PMALNVSPI 67
>gi|288554127|ref|YP_003426062.1| cold shock protein CspC [Bacillus pseudofirmus OF4]
gi|288545287|gb|ADC49170.1| cold shock protein CspC [Bacillus pseudofirmus OF4]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V ++ V+
Sbjct: 2 QGKVKWFNAEKGFGFIERED----GDDVFVHFSAINSEGFKSLDEGQDVEFEIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|218778357|ref|YP_002429675.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
gi|218759741|gb|ACL02207.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 66
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI E G DVF+H +A+ G L EG V++D Q
Sbjct: 1 MANGTVKWFNDAKGYGFIEQE----EGGDVFVHYTAITGKGFRTLAEGDRVSFDVEQGQK 56
Query: 62 NGKYSAENL 70
+A N+
Sbjct: 57 G--PAATNV 63
>gi|160938586|ref|ZP_02085938.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
BAA-613]
gi|158438285|gb|EDP16044.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
BAA-613]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFIT + E+G+D+F+H S +A+ G +L +GQ VT+D +
Sbjct: 1 MNKGTVKWFNSQKGFGFIT---NEENGEDIFVHFSGIATDGFKSLEDGQSVTFDITNGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQAVNV 64
>gi|255545420|ref|XP_002513770.1| cold shock protein, putative [Ricinus communis]
gi|223546856|gb|EEF48353.1| cold shock protein, putative [Ricinus communis]
Length = 184
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++ KG+GFI P+ G+D+F+H++++ S G L+EGQ V + + +G+
Sbjct: 9 GTVKWFSAQKGFGFIAPDD---GGEDLFVHQTSIQSDGFRTLSEGQPVEFSVDFGE-DGR 64
Query: 65 YSAENL 70
A ++
Sbjct: 65 TKAVDV 70
>gi|71725895|gb|AAZ39066.1| cold shock protein [Exiguobacterium sibiricum 255-15]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E GDDVF+H SA+ + G +L EGQ V+++ +
Sbjct: 4 GKVKWFNSEKGFGFIEREN----GDDVFVHFSAIQTDGFKSLDEGQEVSFEVEEGQRG-- 57
Query: 65 YSAENLK 71
A N+
Sbjct: 58 PQAANVT 64
>gi|152969227|ref|YP_001334336.1| cold shock protein CspE [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|156934856|ref|YP_001438772.1| cold shock protein CspE [Cronobacter sakazakii ATCC BAA-894]
gi|262041285|ref|ZP_06014496.1| CspA family cold shock transcriptional regulator [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|296103410|ref|YP_003613556.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|330006059|ref|ZP_08305477.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
gi|150954076|gb|ABR76106.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|156533110|gb|ABU77936.1| hypothetical protein ESA_02704 [Cronobacter sakazakii ATCC
BAA-894]
gi|259041401|gb|EEW42461.1| CspA family cold shock transcriptional regulator [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|295057869|gb|ADF62607.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295096620|emb|CBK85710.1| cold shock protein E (CspE) [Enterobacter cloacae subsp. cloacae
NCTC 9394]
gi|328535997|gb|EGF62410.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|90578292|ref|ZP_01234103.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|90441378|gb|EAS66558.1| putative Cold shock-like protein [Vibrio angustum S14]
Length = 69
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V++D Q
Sbjct: 5 TGIVKWFNEEKGFGFITQDN---GGADVFVHFRAITGEGFKTLAEGQKVSFDIEQGQKG- 60
Query: 64 KYSAENLKL 72
A N++
Sbjct: 61 -PQAANVEK 68
>gi|257455324|ref|ZP_05620559.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
gi|257447286|gb|EEV22294.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
Length = 70
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + G DVF H SA+ +G L EGQ V++ Q
Sbjct: 5 ATGTVKWFNESKGFGFIAQDN---GGQDVFAHYSAIQGSGFKTLKEGQRVSFVLSQGQKG 61
Query: 63 GKYSAENLK 71
AE ++
Sbjct: 62 --PQAEQIE 68
>gi|317500145|ref|ZP_07958378.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087628|ref|ZP_08336556.1| cold shock-like protein cspC [Lachnospiraceae bacterium
3_1_46FAA]
gi|316898434|gb|EFV20472.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA]
gi|330399807|gb|EGG79467.1| cold shock-like protein cspC [Lachnospiraceae bacterium
3_1_46FAA]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI S G+D+F+H S + G L EGQ V ++ +
Sbjct: 2 TGTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKTLEEGQAVEFEVTEGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVVKL 65
>gi|294633715|ref|ZP_06712273.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292830357|gb|EFF88708.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 67
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S ++ G L EG+ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNISGNGYRELVEGEPVTFDVTQGQK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PQAENI 64
>gi|227499116|ref|ZP_03929251.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21]
gi|284047580|ref|YP_003397919.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans
DSM 20731]
gi|226904563|gb|EEH90481.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21]
gi|283951801|gb|ADB46604.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ +
Sbjct: 2 TGKVKWFNAEKGYGFIERED----GGDVFVHFSAIQGEGFKTLEEGQAVEFDVVEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -EQAANVVKL 65
>gi|197301371|ref|ZP_03166452.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC
29176]
gi|197299528|gb|EDY34047.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC
29176]
Length = 65
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI S G+D+F+H S + G +L EGQ V +D +
Sbjct: 2 TGTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKSLEEGQAVEFDVTEGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVVKL 65
>gi|260185766|ref|ZP_05763240.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
gi|289419394|gb|EFD16595.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
Length = 135
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 56 G--PQALSLRLIEPPPS 70
>gi|149908417|ref|ZP_01897080.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
gi|149808580|gb|EDM68515.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
Length = 68
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ S G L E Q V ++
Sbjct: 5 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSAIESDGFRTLLENQKVEFNVTDGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 60 -PQAENIVVL 68
>gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare ATCC 13950]
Length = 67
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI P+ DVF+H S + G +L E Q V ++ Q
Sbjct: 1 MTQGTVKWFNGEKGFGFIAPDD---GSADVFVHYSEIQGGGYRSLEENQRVQFEVGQGAK 57
Query: 62 NGKYSAENLKLV 73
A + V
Sbjct: 58 G--PQATGVTAV 67
>gi|268590420|ref|ZP_06124641.1| conserved domain protein [Providencia rettgeri DSM 1131]
gi|291314334|gb|EFE54787.1| conserved domain protein [Providencia rettgeri DSM 1131]
Length = 69
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ G L EGQ V ++ +
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIMGDGFKTLAEGQKVEFEITEGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|78043760|ref|YP_359027.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995875|gb|ABB14774.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
Z-2901]
Length = 65
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KGYGFI E G DVF+H SA+ G L EGQ V ++ V+
Sbjct: 2 QGKVKWFDPKKGYGFIERED----GGDVFVHFSAIQEKGFKTLEEGQRVEFEIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|288941163|ref|YP_003443403.1| cold-shock DNA-binding domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288896535|gb|ADC62371.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
180]
Length = 70
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI E G DVF+H SA+ AG L EGQ VT + Q
Sbjct: 8 GTVKWFNDEKGYGFIERE----GGKDVFVHYSAINGAGRKTLAEGQQVTMEVTQGPKG-- 61
Query: 65 YSAENLKL 72
AEN+
Sbjct: 62 PQAENVTP 69
>gi|116249427|ref|YP_765268.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|241113498|ref|YP_002973333.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|115254077|emb|CAK12474.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
gi|240861706|gb|ACS59372.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 67
Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPEG G DVF+H SA+ S G +L EG V+++ Q+
Sbjct: 1 MPTGTVKFFNDDKGFGFITPEG---GGQDVFVHVSALQSGG--SLREGDKVSFEVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ +
Sbjct: 56 TGKSKAENVSTL 67
>gi|296100584|ref|YP_003610730.1| major cold shock protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055043|gb|ADF59781.1| major cold shock protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295095151|emb|CBK84241.1| cold-shock DNA-binding protein family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGLVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAGNV 67
>gi|152975554|ref|YP_001375071.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152024306|gb|ABS22076.1| putative cold-shock DNA-binding domain protein [Bacillus
cytotoxicus NVH 391-98]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ + +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVED----GNDVFVHFSAITGEGFKTLDEGQEVNFEVEEGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|54308343|ref|YP_129363.1| putative cold shock-like protein CspD [Photobacterium profundum
SS9]
gi|46912771|emb|CAG19561.1| putative cold shock-like protein CspD [Photobacterium profundum
SS9]
Length = 73
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE D+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEEGEG---DIFAHYSTIQMDGYRTLKAGQQVNYEIQTGPK 57
Query: 62 NGKYSAENLKLVP 74
+ A + V
Sbjct: 58 G--HHASEIVPVE 68
>gi|305680386|ref|ZP_07403194.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266]
gi|305659917|gb|EFM49416.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + G L E Q+V ++
Sbjct: 1 MAKGTVKWFNAEKGFGFIEPED---GSADVFVHYSEINGDGFRYLEEDQVVEFEVGGGAK 57
Query: 62 NGKYSAENLKLV 73
A N++++
Sbjct: 58 G--TQALNVRVI 67
>gi|229102298|ref|ZP_04233007.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28]
gi|228681199|gb|EEL35367.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28]
Length = 77
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI + DDVF+H SA+ G L EGQ V++D + +
Sbjct: 14 QGKVKWFNNEKGFGFIEMD----GADDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 68
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 69 -PQAANVVKL 77
>gi|30262422|ref|NP_844799.1| cold shock protein CspA [Bacillus anthracis str. Ames]
gi|42781516|ref|NP_978763.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
gi|47527715|ref|YP_019064.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
gi|47570638|ref|ZP_00241249.1| cold-shock domain family protein-related protein [Bacillus cereus
G9241]
gi|49185266|ref|YP_028518.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
gi|49477693|ref|YP_036543.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143060|ref|YP_083768.1| cold shock protein [Bacillus cereus E33L]
gi|118477820|ref|YP_894971.1| cold-shock DNA-binding protein family protein [Bacillus
thuringiensis str. Al Hakam]
gi|170687065|ref|ZP_02878284.1| cold shock protein CspA [Bacillus anthracis str. A0465]
gi|177649670|ref|ZP_02932672.1| cold shock protein CspA [Bacillus anthracis str. A0174]
gi|190565634|ref|ZP_03018554.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
gi|196033810|ref|ZP_03101221.1| cold shock protein CspA [Bacillus cereus W]
gi|196039884|ref|ZP_03107187.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
gi|196043556|ref|ZP_03110794.1| cold shock protein CspA [Bacillus cereus 03BB108]
gi|206973608|ref|ZP_03234526.1| cold shock protein CspA [Bacillus cereus H3081.97]
gi|217959917|ref|YP_002338473.1| cold shock protein CspA [Bacillus cereus AH187]
gi|218903556|ref|YP_002451390.1| cold shock protein CspA [Bacillus cereus AH820]
gi|222096006|ref|YP_002530063.1| cold shock protein [Bacillus cereus Q1]
gi|225864386|ref|YP_002749764.1| cold shock protein CspA [Bacillus cereus 03BB102]
gi|227814766|ref|YP_002814775.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
gi|228915013|ref|ZP_04078615.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228927471|ref|ZP_04090526.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933740|ref|ZP_04096587.1| Cold shock protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228946025|ref|ZP_04108365.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228985510|ref|ZP_04145667.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229030123|ref|ZP_04186185.1| Cold shock protein cspB [Bacillus cereus AH1271]
gi|229091398|ref|ZP_04222612.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
gi|229121965|ref|ZP_04251183.1| Cold shock protein cspB [Bacillus cereus 95/8201]
gi|229139109|ref|ZP_04267686.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
gi|229155998|ref|ZP_04284099.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
gi|229184633|ref|ZP_04311834.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
gi|229196632|ref|ZP_04323376.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|229602363|ref|YP_002866754.1| cold shock protein CspA [Bacillus anthracis str. A0248]
gi|254684998|ref|ZP_05148858.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066]
gi|254722404|ref|ZP_05184192.1| cold shock protein CspA [Bacillus anthracis str. A1055]
gi|254737445|ref|ZP_05195149.1| cold shock protein CspA [Bacillus anthracis str. Western North
America USA6153]
gi|254743370|ref|ZP_05201055.1| cold shock protein CspA [Bacillus anthracis str. Kruger B]
gi|254751761|ref|ZP_05203798.1| cold shock protein CspA [Bacillus anthracis str. Vollum]
gi|254760279|ref|ZP_05212303.1| cold shock protein CspA [Bacillus anthracis str. Australia 94]
gi|301053941|ref|YP_003792152.1| cold shock protein [Bacillus anthracis CI]
gi|49035526|sp|Q81QK2|CSPE_BACAN RecName: Full=Cold shock-like protein CspE
gi|30257053|gb|AAP26285.1| cold shock protein CspA [Bacillus anthracis str. Ames]
gi|42737439|gb|AAS41371.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
gi|47502863|gb|AAT31539.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
gi|47552693|gb|EAL11133.1| cold-shock domain family protein-related protein [Bacillus cereus
G9241]
gi|49179193|gb|AAT54569.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
gi|49329249|gb|AAT59895.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51976529|gb|AAU18079.1| cold shock protein [Bacillus cereus E33L]
gi|118417045|gb|ABK85464.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
str. Al Hakam]
gi|170669116|gb|EDT19860.1| cold shock protein CspA [Bacillus anthracis str. A0465]
gi|172084744|gb|EDT69802.1| cold shock protein CspA [Bacillus anthracis str. A0174]
gi|190563661|gb|EDV17626.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
gi|195993490|gb|EDX57447.1| cold shock protein CspA [Bacillus cereus W]
gi|196025865|gb|EDX64534.1| cold shock protein CspA [Bacillus cereus 03BB108]
gi|196029143|gb|EDX67747.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
gi|206747764|gb|EDZ59153.1| cold shock protein CspA [Bacillus cereus H3081.97]
gi|217064050|gb|ACJ78300.1| cold shock protein CspA [Bacillus cereus AH187]
gi|218534973|gb|ACK87371.1| cold shock protein CspA [Bacillus cereus AH820]
gi|221240064|gb|ACM12774.1| cold shock protein [Bacillus cereus Q1]
gi|225787378|gb|ACO27595.1| cold shock protein CspA [Bacillus cereus 03BB102]
gi|227007633|gb|ACP17376.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
gi|228586988|gb|EEK45062.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|228598846|gb|EEK56465.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
gi|228627605|gb|EEK84331.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
gi|228644464|gb|EEL00719.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
gi|228661493|gb|EEL17115.1| Cold shock protein cspB [Bacillus cereus 95/8201]
gi|228691940|gb|EEL45683.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
gi|228731181|gb|EEL82101.1| Cold shock protein cspB [Bacillus cereus AH1271]
gi|228774275|gb|EEM22684.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228813671|gb|EEM59952.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228825973|gb|EEM71759.1| Cold shock protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832190|gb|EEM77772.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844631|gb|EEM89680.1| Cold shock protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229266771|gb|ACQ48408.1| cold shock protein CspA [Bacillus anthracis str. A0248]
gi|300376110|gb|ADK05014.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
gi|324326434|gb|ADY21694.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V+++ +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVE----GGNDVFVHFSAITGDGFKSLDEGQEVSFEVEDGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|224033259|gb|ACN35705.1| unknown [Zea mays]
Length = 110
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
RG++KW+N KG+GFI+PE +D+F+H+S++ S G +L EG+ V + +
Sbjct: 6 RQRGTVKWFNDTKGFGFISPED---GSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGG 61
>gi|126725654|ref|ZP_01741496.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126704858|gb|EBA03949.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE G DVF+H SAV AGL L++ Q V YD +
Sbjct: 1 MPNGTVKWFNQTKGFGFIAPED---GGSDVFVHISAVERAGLTGLSDNQKVQYDLEEG-R 56
Query: 62 NGKYSAENLKL 72
+G+ A N+ L
Sbjct: 57 DGRSLAANIVL 67
>gi|190573988|ref|YP_001971833.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
gi|194365403|ref|YP_002028013.1| cold-shock DNA-binding domain-containing protein
[Stenotrophomonas maltophilia R551-3]
gi|254524777|ref|ZP_05136832.1| putative 'Cold-shock' DNA-binding domain protein
[Stenotrophomonas sp. SKA14]
gi|190011910|emb|CAQ45531.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
gi|194348207|gb|ACF51330.1| cold-shock DNA-binding domain protein [Stenotrophomonas
maltophilia R551-3]
gi|219722368|gb|EED40893.1| putative 'Cold-shock' DNA-binding domain protein
[Stenotrophomonas sp. SKA14]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG D+F+H A+ G L EGQ VT+ VQ
Sbjct: 4 RQTGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKTLQEGQKVTFIAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADQVQAV 69
>gi|15965657|ref|NP_386010.1| putative cold shock-like transcription regulator protein
[Sinorhizobium meliloti 1021]
gi|150396829|ref|YP_001327296.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|307315974|ref|ZP_07595463.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307321238|ref|ZP_07600640.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|15074838|emb|CAC46483.1| Cold shock protein [Sinorhizobium meliloti 1021]
gi|150028344|gb|ABR60461.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
gi|306893140|gb|EFN23924.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306898377|gb|EFN29075.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +K++N DKG+GFITPEG DVF+H +AV +AGL L +GQ V++D +
Sbjct: 1 MATKGIVKFFNQDKGFGFITPEG---GSKDVFVHITAVQAAGLTTLNDGQEVSFDTEPDR 57
Query: 61 ANGKYSAENLKLV 73
A NL+ +
Sbjct: 58 MGKGPKAVNLQAL 70
>gi|251790554|ref|YP_003005275.1| cold shock protein CspE [Dickeya zeae Ech1591]
gi|271499690|ref|YP_003332715.1| cold-shock DNA-binding domain-containing protein [Dickeya
dadantii Ech586]
gi|307130032|ref|YP_003882048.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937]
gi|247539175|gb|ACT07796.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
gi|270343245|gb|ACZ76010.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
gi|306527561|gb|ADM97491.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITSGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|242239550|ref|YP_002987731.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
gi|242131607|gb|ACS85909.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP+ DVF+H SA+ S L EGQ V + Q
Sbjct: 6 TGLVKWFDAGKGFGFITPDN---GSKDVFVHFSAIQSDDYKTLYEGQKVEFVIQQGQKG- 61
Query: 64 KYSAENLKLV 73
+A N+ ++
Sbjct: 62 -PAAGNVTVL 70
>gi|326794422|ref|YP_004312242.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
gi|326545186|gb|ADZ90406.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
Length = 154
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GF+T + GDDVF+H A+ G L EGQ V + + +
Sbjct: 90 GTVKWFNSSKGFGFLTLDD----GDDVFVHYRAIRGRGRRFLVEGQKVRFYVTEGEKGK- 144
Query: 65 YSAENLKLV 73
AEN+ ++
Sbjct: 145 -QAENVSII 152
>gi|228908166|ref|ZP_04072014.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|229017742|ref|ZP_04174631.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|229023958|ref|ZP_04180438.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|229096909|ref|ZP_04227878.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|229103017|ref|ZP_04233706.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|229115898|ref|ZP_04245295.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|229161370|ref|ZP_04289355.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|229173122|ref|ZP_04300673.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|228610455|gb|EEK67726.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|228622184|gb|EEK79025.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|228667560|gb|EEL23005.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|228680432|gb|EEL34620.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|228686519|gb|EEL40428.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|228737336|gb|EEL87851.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|228743558|gb|EEL93669.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|228851584|gb|EEM96390.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI G+DVF+H SA+ G +L EGQ V+++ +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVAD----GNDVFVHFSAITGDGFKSLDEGQEVSFEVEDGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM
5265]
Length = 84
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ KGYGFIT + DVF+H SA+ G L EG+ V ++ + A
Sbjct: 18 MYAGTVKWFDAQKGYGFITRDDGEG---DVFVHFSAIEGDGFKTLNEGEKVEFEVSRG-A 73
Query: 62 NGKYSAENLKL 72
G +A +K
Sbjct: 74 KGPQAAHVVKK 84
>gi|160880994|ref|YP_001559962.1| cold-shock DNA-binding domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429660|gb|ABX43223.1| cold-shock DNA-binding domain protein [Clostridium
phytofermentans ISDg]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFIT ++E+G+DVF+H S +AS G +L EGQ VT++ +
Sbjct: 1 MNKGTVKWFNAQKGFGFIT---NSETGEDVFVHFSGIASEGFKSLEEGQNVTFEITKGAR 57
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 58 G--MQATNVSI 66
>gi|51244787|ref|YP_064671.1| cold-shock protein (CspD) [Desulfotalea psychrophila LSv54]
gi|50875824|emb|CAG35664.1| probable cold-shock protein (CspD) [Desulfotalea psychrophila
LSv54]
Length = 66
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E GDD+F+H +++ ++G L EG V++D +
Sbjct: 1 MAEGIVKWFNDAKGFGFI----DQEGGDDLFVHHTSINASGFKTLEEGARVSFDIEEGQK 56
Query: 62 NGKYSAENLKLV 73
+A N+ +
Sbjct: 57 G--PAAANVTAL 66
>gi|325278203|ref|ZP_08143698.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324096664|gb|EGB95015.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ
Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 60 G--MQADKVQV 68
>gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
gi|296026691|gb|ADG77461.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 139
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ +G L +GQ V +
Sbjct: 1 MPTGKVKWYDAEKGFGFLSQE----GGEDVYVRSSAL-PSGTDELKQGQRVEFSMAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + ++ + +
Sbjct: 56 G--PQALTVTVLEPAPS 70
>gi|325660793|ref|ZP_08149421.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA]
gi|331085477|ref|ZP_08334562.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA]
gi|325472867|gb|EGC76077.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA]
gi|330407715|gb|EGG87213.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 66
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW++ KGYGFI+ E G+DVF+H S + G L EGQ V ++ +
Sbjct: 1 MNKGTVKWFSNQKGYGFISDEA----GNDVFVHYSGLNMEGFKTLEEGQAVEFEVTEGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAINVVKL 66
>gi|306821247|ref|ZP_07454861.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550759|gb|EFM38736.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ + A G
Sbjct: 2 TGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQTDGFKTLDEGQNVEFEIT-DGARG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVVKL 65
>gi|254441253|ref|ZP_05054746.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
antarcticus 307]
gi|198251331|gb|EDY75646.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
antarcticus 307]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG DVF+H SAV AGL L + Q VT+D ++
Sbjct: 1 MANGTVKWFNSTKGFGFIAPEG---GSKDVFVHISAVEQAGLTGLNDDQKVTFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+ L
Sbjct: 57 DGRESAANIVL 67
>gi|170761832|ref|YP_001785618.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
gi|169408821|gb|ACA57232.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFIT E G+DVF H S + S G +L EGQ V+YD V+
Sbjct: 2 NGTVKWFNGDKGFGFITGED----GNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITII 65
>gi|163749964|ref|ZP_02157208.1| putative Cold shock-like protein [Shewanella benthica KT99]
gi|161330238|gb|EDQ01219.1| putative Cold shock-like protein [Shewanella benthica KT99]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N DKG+GF+T + G DVF+H A+AS G L EGQ V+++ Q +
Sbjct: 5 NTGTVKWFNEDKGFGFLTQDN---GGADVFVHFRAIASEGFKTLDEGQKVSFEVEQGEKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --LQASNV 67
>gi|37525256|ref|NP_928600.1| cold shock protein CspE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784683|emb|CAE13583.1| cold shock-like protein [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 1 MV--HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
M+ +G++KW+N KG+GFITPE DVF+H SA+ G L EGQ V ++
Sbjct: 1 MMSKIKGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQITGFKTLAEGQKVEFEITD 57
Query: 59 NDANGKYSAENLKLV 73
SA N+ +
Sbjct: 58 GAKG--PSAVNVVAI 70
>gi|300113220|ref|YP_003759795.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus
watsonii C-113]
gi|299539157|gb|ADJ27474.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii
C-113]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFI E G D+F+H ++ +G L EGQ V++ VQ
Sbjct: 5 QTGTVKWFNDSKGYGFIQRE----GGSDLFVHYRSITGSGHRTLKEGQQVSFIEVQGQKG 60
Query: 63 GKYSAENLKLV 73
A+N+ ++
Sbjct: 61 --PQADNVTVL 69
>gi|262165515|ref|ZP_06033252.1| cold shock protein CspA [Vibrio mimicus VM223]
gi|262402390|ref|ZP_06078951.1| cold shock protein CspA [Vibrio sp. RC586]
gi|262025231|gb|EEY43899.1| cold shock protein CspA [Vibrio mimicus VM223]
gi|262351172|gb|EEZ00305.1| cold shock protein CspA [Vibrio sp. RC586]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ G D+F+H ++ S G L EGQ V ++ Q +
Sbjct: 5 TTGLVKWFNETKGFGFITPDN---GGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGNKG 61
Query: 63 GKYSAENLKLV 73
A N+ ++
Sbjct: 62 --PQAANVTVL 70
>gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellulare ATCC 13950]
Length = 135
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDADKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIEPPPS 70
>gi|149187264|ref|ZP_01865562.1| cold shock protein [Vibrio shilonii AK1]
gi|148838800|gb|EDL55739.1| cold shock protein [Vibrio shilonii AK1]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N +KGYGFI E G DVF+H A++ G L EGQ V++ Q
Sbjct: 5 NTGTVKWFNEEKGYGFIAQEN----GPDVFVHFRAISGEGFKTLKEGQAVSFGVEQGQKG 60
Query: 63 GKYSAENL 70
A N+
Sbjct: 61 --PQAVNV 66
>gi|89075956|ref|ZP_01162328.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|89048305|gb|EAR53884.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAI 70
>gi|307136096|gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis melo subsp. melo]
Length = 272
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G ++W+N KG+GFI P+ G D+F+H+S++ S G +L G V + D +G
Sbjct: 7 TGVVQWFNDSKGFGFIKPD---VEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD-DG 62
Query: 64 KYSAENLKLVPKSS 77
K A + + SS
Sbjct: 63 KSKAIEVVALDGSS 76
>gi|307253880|ref|ZP_07535732.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260575|ref|ZP_07542267.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306863084|gb|EFM95026.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306869652|gb|EFN01437.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 83
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ ++
Sbjct: 18 ATGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERG 74
Query: 63 GKYSAENLKLV 73
SA N+K +
Sbjct: 75 --PSAVNVKTL 83
>gi|282856781|ref|ZP_06266042.1| conserved domain protein [Pyramidobacter piscolens W5455]
gi|282585404|gb|EFB90711.1| conserved domain protein [Pyramidobacter piscolens W5455]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFIT E G DVF+H SA+ G +L E + V +D V + G
Sbjct: 7 KGKVKWFNSTKGFGFITTE----EGKDVFVHFSAIKMDGYKSLEENEEVEFDVVDGEK-G 61
Query: 64 KYSAENLKL 72
+A ++L
Sbjct: 62 PQAANVVRL 70
>gi|49082348|gb|AAT50574.1| PA1159 [synthetic construct]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI + SG DVF+H A+ G +L EGQ V + +Q
Sbjct: 7 GTVKWFNDAKGYGFIQRD----SGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQKG-- 60
Query: 65 YSAENLKLV 73
AE++ V
Sbjct: 61 LQAEDVSKV 69
>gi|332306352|ref|YP_004434203.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173681|gb|AEE22935.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 72
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE GDD+F H S + G +L GQ V YD Q
Sbjct: 1 MAVGKVKWFNNAKGFGFIVPED---GGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGPK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--LHAENI 64
>gi|256822193|ref|YP_003146156.1| cold-shock DNA-binding domain-containing protein [Kangiella
koreensis DSM 16069]
gi|256795732|gb|ACV26388.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM
16069]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E G DVF H SA+AS+G L EGQ V +
Sbjct: 6 KGTVKWFNEAKGFGFIEQEN----GPDVFAHFSAIASSGFKTLAEGQQVEFTLTDGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENITAL 69
>gi|255324199|ref|ZP_05365321.1| conserved hypothetical protein [Corynebacterium
tuberculostearicum SK141]
gi|311741029|ref|ZP_07714854.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC
33035]
gi|255298715|gb|EET78010.1| conserved hypothetical protein [Corynebacterium
tuberculostearicum SK141]
gi|311303831|gb|EFQ79909.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC
33035]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KGYGFI D+F+H S + +G L E Q VT++
Sbjct: 1 MAQGTVKWFNSEKGYGFIERADGEG---DIFVHYSEIQGSGFRTLEENQQVTFEVGSGPK 57
Query: 62 NGKYSAENLKLV 73
A+++ ++
Sbjct: 58 G--EQAQSVSVI 67
>gi|215426134|ref|ZP_03424053.1| cold shock protein B cspB [Mycobacterium tuberculosis T92]
Length = 157
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 56 G--PQALSLRLIEPPPS 70
>gi|192359729|ref|YP_001980822.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
gi|190685894|gb|ACE83572.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
Length = 75
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N DKGYGFI E G DVF+H A+ G L EGQ VT++ Q
Sbjct: 13 GVVKWFNDDKGYGFIERE----GGADVFVHFRAINGTGRRTLKEGQKVTFEVTQGQKG-- 66
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 67 PQAENVTPL 75
>gi|182436969|ref|YP_001824688.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777583|ref|ZP_08236848.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178465485|dbj|BAG20005.1| putative cold shock protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326657916|gb|EGE42762.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 127
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 GD--QALSVVVLDPTPS 70
>gi|332308080|ref|YP_004435931.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175409|gb|AEE24663.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKG+GFITPE G D+F+H S + G L +GQ V ++ Q+
Sbjct: 1 MSKGTVKWFNADKGFGFITPED---GGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQSP 57
Query: 61 ANGKYSAENLKLV 73
A N+ V
Sbjct: 58 KG--PCANNVVPV 68
>gi|146312144|ref|YP_001177218.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
638]
gi|145319020|gb|ABP61167.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFITP DVF+H SA+ S+ L EGQ V +
Sbjct: 6 TGLVKWFNSEKGFGFITPAD---GSKDVFVHFSAIQSSDYKTLDEGQKVEFSIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAL 70
>gi|239627019|ref|ZP_04670050.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239517165|gb|EEQ57031.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFIT + E+G+D+F+H S +A+ G +L +GQ VT+D +
Sbjct: 1 MNKGTVKWFNSQKGFGFIT---NAENGEDIFVHFSGIATDGFKSLDDGQSVTFDITNGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQAVNV 64
>gi|162447160|ref|YP_001620292.1| DNA-binding cold shock protein [Acholeplasma laidlawii PG-8A]
gi|161985267|gb|ABX80916.1| cold shock protein, DNA-binding [Acholeplasma laidlawii PG-8A]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT + G DVF+H SA+ + G +L EG V ++ D
Sbjct: 2 KGTVKWFDAGKGYGFITADN----GKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGDRGD 57
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 58 --QAANVSKI 65
>gi|300855130|ref|YP_003780114.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
gi|300435245|gb|ADK15012.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G DVF H S + S G +L EGQ V+YD V+
Sbjct: 2 NGTVKWFNGEKGFGFITGED----GKDVFAHFSQINSNGYKSLDEGQKVSYDVVEGPKG- 56
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 57 -LQAENITTI 65
>gi|27467496|ref|NP_764133.1| cold-shock protein C [Staphylococcus epidermidis ATCC 12228]
gi|57866355|ref|YP_188058.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A]
gi|242242178|ref|ZP_04796623.1| cold-shock protein [Staphylococcus epidermidis W23144]
gi|251810255|ref|ZP_04824728.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282875621|ref|ZP_06284492.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis
SK135]
gi|293368262|ref|ZP_06614891.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)]
gi|27315039|gb|AAO04175.1|AE016745_274 cold-shock protein C [Staphylococcus epidermidis ATCC 12228]
gi|57637013|gb|AAW53801.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A]
gi|242234351|gb|EES36663.1| cold-shock protein [Staphylococcus epidermidis W23144]
gi|251806307|gb|EES58964.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281295648|gb|EFA88171.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis
SK135]
gi|291317685|gb|EFE58102.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)]
gi|319401831|gb|EFV90039.1| cold shock protein cspC [Staphylococcus epidermidis FRI909]
gi|329723353|gb|EGG59883.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144]
gi|329736857|gb|EGG73122.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028]
gi|329737950|gb|EGG74174.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045]
Length = 66
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V +D V+ +
Sbjct: 1 MNNGTVKWFNAEKGFGFIEREN----GGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGER 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--EQAANV 63
>gi|261341246|ref|ZP_05969104.1| putative cold shock protein [Enterobacter cancerogenus ATCC
35316]
gi|288316550|gb|EFC55488.1| putative cold shock protein [Enterobacter cancerogenus ATCC
35316]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|254502619|ref|ZP_05114770.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
DFL-11]
gi|222438690|gb|EEE45369.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
DFL-11]
Length = 307
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +K++ DKG+GFITP+ DVF+H SAV +GL +L GQ ++++ +
Sbjct: 214 RQSGVVKFFKSDKGFGFITPDDGET---DVFVHISAVERSGLASLDSGQRISFETEPDRR 270
Query: 62 NGKYSAENLKLVPKSSN 78
A NL+++ + +
Sbjct: 271 GKGPKAVNLQMLEEDGS 287
>gi|163940200|ref|YP_001645084.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|229011681|ref|ZP_04168864.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
gi|229060078|ref|ZP_04197449.1| Cold shock protein cspB [Bacillus cereus AH603]
gi|229133259|ref|ZP_04262090.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
gi|229167245|ref|ZP_04294986.1| Cold shock protein cspB [Bacillus cereus AH621]
gi|163862397|gb|ABY43456.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
gi|228616283|gb|EEK73367.1| Cold shock protein cspB [Bacillus cereus AH621]
gi|228650203|gb|EEL06207.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
gi|228719297|gb|EEL70905.1| Cold shock protein cspB [Bacillus cereus AH603]
gi|228749639|gb|EEL99481.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
Length = 67
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI G DVF+H SA+ G +L EGQ V+++ +
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVAD----GSDVFVHFSAITGDGFKSLDEGQEVSFEVEDGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|146283383|ref|YP_001173536.1| cold acclimation protein B [Pseudomonas stutzeri A1501]
gi|146308538|ref|YP_001189003.1| cold-shock DNA-binding protein family protein [Pseudomonas
mendocina ymp]
gi|145571588|gb|ABP80694.1| cold acclimation protein B [Pseudomonas stutzeri A1501]
gi|145576739|gb|ABP86271.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
gi|327481776|gb|AEA85086.1| cold acclimation protein B [Pseudomonas stutzeri DSM 4166]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ V++ VQ
Sbjct: 4 RQNGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVSFIAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 60 G--MQADQVQIL 69
>gi|29830450|ref|NP_825084.1| cold shock protein [Streptomyces avermitilis MA-4680]
gi|29607562|dbj|BAC71619.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
Length = 127
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GF++ + G DVF+H S + AG+ L GQ V + V
Sbjct: 1 MPTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PAGVEALKPGQRVEFGVVAGQR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+ + +
Sbjct: 56 GD--QALSVVLLDPTPS 70
>gi|163939506|ref|YP_001644390.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|229011015|ref|ZP_04168209.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
gi|229058330|ref|ZP_04196715.1| Cold shock-like protein cspB [Bacillus cereus AH603]
gi|229132514|ref|ZP_04261364.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
gi|229166538|ref|ZP_04294291.1| Cold shock-like protein cspB [Bacillus cereus AH621]
gi|163861703|gb|ABY42762.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
gi|228616942|gb|EEK74014.1| Cold shock-like protein cspB [Bacillus cereus AH621]
gi|228650951|gb|EEL06936.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
gi|228720004|gb|EEL71593.1| Cold shock-like protein cspB [Bacillus cereus AH603]
gi|228750187|gb|EEM00019.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI EGS +DVF+H SA+ S G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEMEGS----EDVFVHFSAIQSDGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVAKL 65
>gi|127512543|ref|YP_001093740.1| cold-shock DNA-binding domain-containing protein [Shewanella
loihica PV-4]
gi|126637838|gb|ABO23481.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 60 -PQAENVTVI 68
>gi|313891994|ref|ZP_07825595.1| cold shock-like protein CspE [Dialister microaerophilus UPII
345-E]
gi|329120945|ref|ZP_08249576.1| cold shock protein [Dialister micraerophilus DSM 19965]
gi|313119637|gb|EFR42828.1| cold shock-like protein CspE [Dialister microaerophilus UPII
345-E]
gi|327471107|gb|EGF16561.1| cold shock protein [Dialister micraerophilus DSM 19965]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ +KGYGFI E G DVF+H SA+ + G LTEGQ V +D ++
Sbjct: 2 KGTVKWFSAEKGYGFIERE----EGGDVFVHFSAIQTEGFKTLTEGQKVEFDIIEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ ++
Sbjct: 57 -PQAANVVIL 65
>gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
tuberculosis T92]
gi|289689978|gb|EFD57407.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
tuberculosis T92]
Length = 136
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 56 G--PQALSLRLIEPPPS 70
>gi|291457452|ref|ZP_06596842.1| cold-shock domain protein [Bifidobacterium breve DSM 20213]
gi|291381287|gb|EFE88805.1| cold-shock domain protein [Bifidobacterium breve DSM 20213]
Length = 129
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ KGYGFIT E G DVFL A+ G+ L +G V Y V
Sbjct: 1 MPTGRVRWFDAAKGYGFITSE----EGKDVFLPAQAL-PTGVNTLRKGAKVEYSVVDGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++KL+ S +
Sbjct: 56 G--PQAMDVKLIASSPS 70
>gi|307546402|ref|YP_003898881.1| cold shock protein CspA [Halomonas elongata DSM 2581]
gi|307218426|emb|CBV43696.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
elongata DSM 2581]
Length = 154
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFIT + SG+DVF+H A+ G L EGQ V Y +N+
Sbjct: 91 GEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGRGHRTLAEGQKVKYQVSRNERG-- 144
Query: 65 YSAENLKLV 73
A+++ ++
Sbjct: 145 LQADDVTVI 153
>gi|302873916|ref|YP_003842549.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|307689837|ref|ZP_07632283.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|302576773|gb|ADL50785.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
743B]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFIT E G DVF H S + S G +L E Q V+Y+ V
Sbjct: 2 NGTVKWFNAQKGFGFITGED----GKDVFAHFSKINSDGYKSLEENQKVSYEVVDGQKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITII 65
>gi|16765332|ref|NP_460947.1| cold-shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56413093|ref|YP_150168.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161613431|ref|YP_001587396.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197362019|ref|YP_002141656.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205352312|ref|YP_002226113.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207856492|ref|YP_002243143.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224583507|ref|YP_002637305.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238912431|ref|ZP_04656268.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|325530013|sp|E1WGN1|CSPJ_SALTS RecName: Full=Cold shock-like protein CspJ
gi|325530014|sp|P0CL01|CSPJ_SALTY RecName: Full=Cold shock-like protein CspJ
gi|2961317|emb|CAA72682.1| cspB [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16420530|gb|AAL20906.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56127350|gb|AAV76856.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161362795|gb|ABX66563.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197093496|emb|CAR58956.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205272093|emb|CAR36945.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206708295|emb|CAR32598.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224468034|gb|ACN45864.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261247161|emb|CBG24984.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267993987|gb|ACY88872.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158509|emb|CBW18019.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312912986|dbj|BAJ36960.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320085386|emb|CBY95167.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224641|gb|EFX49704.1| Cold shock protein CspG [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616988|gb|EFY13896.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618228|gb|EFY15120.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322625898|gb|EFY22717.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322626350|gb|EFY23160.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632765|gb|EFY29510.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322639107|gb|EFY35800.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640379|gb|EFY37036.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647216|gb|EFY43715.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648415|gb|EFY44868.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322655544|gb|EFY51852.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660322|gb|EFY56560.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663003|gb|EFY59210.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322668188|gb|EFY64347.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322674053|gb|EFY70147.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322675595|gb|EFY71669.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322682994|gb|EFY79010.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322686688|gb|EFY82666.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323130275|gb|ADX17705.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323195075|gb|EFZ80259.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197875|gb|EFZ83000.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323204480|gb|EFZ89486.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323207570|gb|EFZ92518.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210991|gb|EFZ95851.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323217555|gb|EGA02274.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323222458|gb|EGA06829.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227477|gb|EGA11639.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231577|gb|EGA15690.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236020|gb|EGA20099.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323240590|gb|EGA24633.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245482|gb|EGA29482.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323247600|gb|EGA31551.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323254428|gb|EGA38244.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257760|gb|EGA41440.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323262133|gb|EGA45696.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323266256|gb|EGA49746.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323270733|gb|EGA54172.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326622839|gb|EGE29184.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326627359|gb|EGE33702.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332988884|gb|AEF07867.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S L E Q V + Q
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|75759683|ref|ZP_00739766.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74492830|gb|EAO55963.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 77
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 14 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 68
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 69 -PQAANVVKL 77
>gi|260467130|ref|ZP_05813309.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259029142|gb|EEW30439.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K+YN KG+GFI P G DVF+H SA+ AG L EGQ + ++ + DA
Sbjct: 1 MNTGTVKFYNGQKGFGFIQPAD---GGKDVFVHVSALERAGFPGLAEGQKLQFEL-ERDA 56
Query: 62 NGKYSAENLKLV 73
G+ SA NL+L+
Sbjct: 57 KGRESAANLQLI 68
>gi|170726448|ref|YP_001760474.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|169811795|gb|ACA86379.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKGYGFITPE G D+F+H S + G L +GQ V +D +
Sbjct: 1 MSKGTVKWFNADKGYGFITPED---GGKDLFVHHSEIRSGGGYATLNDGQSVEFDVGEGQ 57
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 58 KG--PCATNV 65
>gi|99080915|ref|YP_613069.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
TM1040]
gi|99037195|gb|ABF63807.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI EG + +DVF+H SAV +GL L +GQ VT++ Q+
Sbjct: 1 MANGTVKWFNSTKGYGFIAVEGRS---NDVFVHISAVERSGLTGLADGQAVTFEI-QSGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA +L L
Sbjct: 57 DGRESATDLAL 67
>gi|157375749|ref|YP_001474349.1| cold-shock DNA-binding domain-containing protein [Shewanella
sediminis HAW-EB3]
gi|157318123|gb|ABV37221.1| cold-shock DNA-binding domain protein [Shewanella sediminis
HAW-EB3]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +V
Sbjct: 60 -PQAENVTIV 68
>gi|119945576|ref|YP_943256.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864180|gb|ABM03657.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q
Sbjct: 6 QGTVKWFNESKGFGFIE----QASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENIVAL 69
>gi|72160638|ref|YP_288295.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
YX]
gi|71914370|gb|AAZ54272.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
Length = 127
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KG+GF+T + G +VFLH SA+ G L GQ V + V+
Sbjct: 1 MPTGKVKWYDAGKGFGFLTKDD----GGEVFLHASALPP-GTTTLRPGQRVEFGIVEGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++L+ +
Sbjct: 56 G--TQALQVRLLDTPPS 70
>gi|71066401|ref|YP_265128.1| cold-shock DNA-binding protein family protein [Psychrobacter
arcticus 273-4]
gi|93006957|ref|YP_581394.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
cryohalolentis K5]
gi|71039386|gb|AAZ19694.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
273-4]
gi|92394635|gb|ABE75910.1| cold-shock DNA-binding protein family [Psychrobacter
cryohalolentis K5]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI PE +G DVF H S + +G L EGQ V + Q
Sbjct: 5 QKGTVKWFNEAKGFGFIAPE----TGADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKG 60
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 61 --PQAHNIVAI 69
>gi|302391875|ref|YP_003827695.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM
5501]
gi|302203952|gb|ADL12630.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM
5501]
Length = 110
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI E GDD+F+H +A+ G +L E Q V+++ V++D
Sbjct: 47 TGKVKWFDTKKGYGFIEQED----GDDIFVHYTAIQEEGFKDLEEEQQVSFEVVESDKG- 101
Query: 64 KYSAENLKLV 73
AEN+ V
Sbjct: 102 -LQAENVTKV 110
>gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-containing protein [Mycobacterium
avium 104]
gi|254773885|ref|ZP_05215401.1| CspB [Mycobacterium avium subsp. avium ATCC 25291]
gi|118167486|gb|ABK68383.1| 'Cold-shock' DNA-binding domain [Mycobacterium avium 104]
Length = 135
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDADKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIEPPPS 70
>gi|167032005|ref|YP_001667236.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida GB-1]
gi|166858493|gb|ABY96900.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 60 G--LQADQVQVV 69
>gi|90408353|ref|ZP_01216516.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3]
gi|90310516|gb|EAS38638.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H SA+ S G L EGQ V + Q
Sbjct: 5 TTGTVKWFNESKGFGFIEQEN----GPDVFAHFSAIVSNGFKTLAEGQKVQFTVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --PQAENIVAL 69
>gi|104774747|ref|YP_619727.1| cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116514883|ref|YP_813789.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|313124689|ref|YP_004034948.1| cold shock-like protein, cspa family [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|21633215|gb|AAM52983.1| CspA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423828|emb|CAI98855.1| Cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116094198|gb|ABJ59351.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|312281252|gb|ADQ61971.1| cold shock-like protein, CspA family [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325126587|gb|ADY85917.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325685001|gb|EGD27141.1| cold shock protein CspA [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKG+GFIT DVF+H S++ + G +L EGQ V+YD Q +
Sbjct: 1 MQNGTVKWFNADKGFGFITGSDG-----DVFVHFSSIKTNGFKSLEEGQKVSYDVEQGNR 55
Query: 62 NGKYSAENL 70
A N+
Sbjct: 56 G--PQATNV 62
>gi|121997901|ref|YP_001002688.1| cold-shock DNA-binding domain-containing protein [Halorhodospira
halophila SL1]
gi|121589306|gb|ABM61886.1| cold-shock DNA-binding protein family [Halorhodospira halophila
SL1]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW++ KGYGFI+ E G+DVF+H A+ G +L EGQ V + ++
Sbjct: 4 RQQGTVKWFDNAKGYGFISRE----GGEDVFVHFRAIRGDGFRSLDEGQAVEFSVTRSPK 59
Query: 62 NGKYSAENLKLV 73
AE++ V
Sbjct: 60 G--LQAEDVAAV 69
>gi|147679090|ref|YP_001213305.1| cold shock proteins [Pelotomaculum thermopropionicum SI]
gi|146275187|dbj|BAF60936.1| cold shock proteins [Pelotomaculum thermopropionicum SI]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ G
Sbjct: 3 GKVKWFNQEKGYGFIERED----GGDVFVHFSAIQEEGFKTLAEGQKVEFDIVEGAR-GP 57
Query: 65 YSAENLKL 72
+A +KL
Sbjct: 58 QAANVIKL 65
>gi|153814427|ref|ZP_01967095.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC
27756]
gi|145848823|gb|EDK25741.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC
27756]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI S G+D+F+H S + G L EGQ V ++ +
Sbjct: 7 TGTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKTLEEGQAVEFEVTEGAKG- 61
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 62 -PQATNVVKL 70
>gi|262372451|ref|ZP_06065730.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262312476|gb|EEY93561.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + VQ
Sbjct: 4 REQGVVKWFNDTKGFGFIQR----NGGDDVFVHFRAIVGEGHRSLRDGQRVEFSVVQGQK 59
Query: 62 NGKYSAENLKLVP 74
+ AEN++ +
Sbjct: 60 G--FQAENVQPLD 70
>gi|270159041|ref|ZP_06187697.1| cold shock protein [Legionella longbeachae D-4968]
gi|289166123|ref|YP_003456261.1| Cold shock-like protein CspD [Legionella longbeachae NSW150]
gi|269987380|gb|EEZ93635.1| cold shock protein [Legionella longbeachae D-4968]
gi|288859296|emb|CBJ13230.1| putative Cold shock-like protein CspD [Legionella longbeachae
NSW150]
Length = 76
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KG+GFI PE GDD+F+H S++ G L GQ+V YD Q D
Sbjct: 1 MARGEVKWFNNAKGWGFIIPEN---EGDDIFVHFSSIHGTGYKTLAPGQIVNYDVEQGDK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ ++ +S
Sbjct: 58 G--LHAANVIVLNESVE 72
>gi|229121251|ref|ZP_04250482.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
gi|228662096|gb|EEL17705.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
Length = 77
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 14 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRG- 68
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 69 -PQAANVVKL 77
>gi|119503291|ref|ZP_01625375.1| putative Cold-shock protein [marine gamma proteobacterium
HTCC2080]
gi|119460937|gb|EAW42028.1| putative Cold-shock protein [marine gamma proteobacterium
HTCC2080]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFIT +D+F+H A+ G +L EG V + + D
Sbjct: 4 RQTGVVKWFNNAKGFGFITMTDRE---EDIFVHFRAIQGDGYRSLNEGDAVEFTLAEGDK 60
Query: 62 NGKYSAENLKL 72
AE +
Sbjct: 61 G--LQAEEVTK 69
>gi|90023400|ref|YP_529227.1| cold-shock DNA-binding protein family protein [Saccharophagus
degradans 2-40]
gi|89953000|gb|ABD83015.1| cold-shock DNA-binding protein family [Saccharophagus degradans
2-40]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI +SG DVF H SA+AS+G L EGQ V + Q
Sbjct: 5 TTGTVKWFNESKGFGFIE----QKSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --PQAENIVAI 69
>gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Mycobacterium tuberculosis H37Rv]
gi|15840284|ref|NP_335321.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
CDC1551]
gi|31792059|ref|NP_854552.1| cold shock-like protein B CspB [Mycobacterium bovis AF2122/97]
gi|121636794|ref|YP_977017.1| putative cold shock-like protein B cspB [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148660648|ref|YP_001282171.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
H37Ra]
gi|215402667|ref|ZP_03414848.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
gi|215410456|ref|ZP_03419264.1| cold shock protein B cspB [Mycobacterium tuberculosis 94_M4241A]
gi|215429728|ref|ZP_03427647.1| cold shock protein B cspB [Mycobacterium tuberculosis EAS054]
gi|215445010|ref|ZP_03431762.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
gi|218752536|ref|ZP_03531332.1| cold shock protein B cspB [Mycobacterium tuberculosis GM 1503]
gi|219556733|ref|ZP_03535809.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
gi|224989265|ref|YP_002643952.1| putative cold shock-like protein B [Mycobacterium bovis BCG str.
Tokyo 172]
gi|254549847|ref|ZP_05140294.1| cold shock protein B cspB [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260199890|ref|ZP_05767381.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
gi|260204068|ref|ZP_05771559.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
gi|289442280|ref|ZP_06432024.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
gi|289568834|ref|ZP_06449061.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
gi|289573493|ref|ZP_06453720.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
gi|289752926|ref|ZP_06512304.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054]
gi|289756956|ref|ZP_06516334.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
gi|289761002|ref|ZP_06520380.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM
1503]
gi|294996351|ref|ZP_06802042.1| cold shock protein [Mycobacterium tuberculosis 210]
gi|297633388|ref|ZP_06951168.1| cold shock protein [Mycobacterium tuberculosis KZN 4207]
gi|297730373|ref|ZP_06959491.1| cold shock protein [Mycobacterium tuberculosis KZN R506]
gi|306774995|ref|ZP_07413332.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001]
gi|306782090|ref|ZP_07420427.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002]
gi|306783539|ref|ZP_07421861.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003]
gi|306787904|ref|ZP_07426226.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004]
gi|306792245|ref|ZP_07430547.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005]
gi|306796643|ref|ZP_07434945.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006]
gi|306802530|ref|ZP_07439198.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008]
gi|306806712|ref|ZP_07443380.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007]
gi|306966908|ref|ZP_07479569.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009]
gi|306971103|ref|ZP_07483764.1| putative cold-shock DNA-binding domain protein [Mycobacterium
tuberculosis SUMu010]
gi|307078831|ref|ZP_07488001.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011]
gi|313657699|ref|ZP_07814579.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN V2475]
gi|2916930|emb|CAA17677.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium
tuberculosis H37Rv]
gi|13880445|gb|AAK45135.1| cold-shock domain family protein [Mycobacterium tuberculosis
CDC1551]
gi|31617646|emb|CAD93756.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium bovis
AF2122/97]
gi|121492441|emb|CAL70909.1| Probable cold shock-like protein B cspB [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148504800|gb|ABQ72609.1| cold-shock domain family protein [Mycobacterium tuberculosis
H37Ra]
gi|224772378|dbj|BAH25184.1| putative cold shock-like protein B [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289415199|gb|EFD12439.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
gi|289537924|gb|EFD42502.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
gi|289542588|gb|EFD46236.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
gi|289693513|gb|EFD60942.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054]
gi|289708508|gb|EFD72524.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM
1503]
gi|289712520|gb|EFD76532.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
gi|308216490|gb|EFO75889.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001]
gi|308325206|gb|EFP14057.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002]
gi|308331700|gb|EFP20551.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003]
gi|308335465|gb|EFP24316.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004]
gi|308339263|gb|EFP28114.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005]
gi|308342940|gb|EFP31791.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006]
gi|308346825|gb|EFP35676.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007]
gi|308350742|gb|EFP39593.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008]
gi|308355403|gb|EFP44254.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009]
gi|308359355|gb|EFP48206.1| putative cold-shock DNA-binding domain protein [Mycobacterium
tuberculosis SUMu010]
gi|308363262|gb|EFP52113.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011]
gi|326904909|gb|EGE51842.1| cold shock protein B cspB [Mycobacterium tuberculosis W-148]
Length = 135
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 56 G--PQALSLRLIEPPPS 70
>gi|300715528|ref|YP_003740331.1| Cold shock protein [Erwinia billingiae Eb661]
gi|299061364|emb|CAX58473.1| Cold shock protein [Erwinia billingiae Eb661]
Length = 70
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI+P DVF+H SA+ + G L EGQ V +
Sbjct: 6 TGLVKWFNAEKGFGFISPTD---GSKDVFVHFSAIQNGGFKTLEEGQKVEFSIENGQKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAL 70
>gi|251799709|ref|YP_003014440.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
gi|247547335|gb|ACT04354.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
Length = 65
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ + G L EGQ V +D V+
Sbjct: 2 QGKVKWFNAEKGYGFIETE----QGGDVFVHFSAIQAEGFKTLEEGQAVEFDIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|254752895|ref|ZP_05204931.1| cold shock protein CspB [Bacillus anthracis str. Vollum]
gi|254759167|ref|ZP_05211193.1| cold shock protein CspB [Bacillus anthracis str. Australia 94]
Length = 66
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHXSAIQGEGFKTLEEGQEVTFEVEQGNR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 G--PQATNVNK 65
>gi|254512032|ref|ZP_05124099.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
bacterium KLH11]
gi|221535743|gb|EEE38731.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
bacterium KLH11]
Length = 68
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE E G DVF+H SAV +GL L + Q VTY+ +
Sbjct: 1 MPAGTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVTYEL-RAGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA+N++L
Sbjct: 57 DGRESADNIEL 67
>gi|163760029|ref|ZP_02167113.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica
DFL-43]
gi|162282987|gb|EDQ33274.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica
DFL-43]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K+YN KG+GFI P+ DVF+H +A+ AG+ L EGQ V++D ++
Sbjct: 1 MQIGTVKFYNDQKGFGFIAPDD---GSKDVFVHATALERAGMRGLAEGQKVSFDTAEDRR 57
Query: 62 NGKYSAENLK 71
GK + +N++
Sbjct: 58 TGKTAVQNIQ 67
>gi|117618294|ref|YP_856386.1| cold shock domain-containing protein CspD [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117559701|gb|ABK36649.1| cold shock domain protein CspD [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 72
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PEG G+D+F H S + G L GQ V ++ Q
Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---GGEDIFAHDSTIQMEGYKTLKAGQAVNFELQQGPK 57
Query: 62 NGKYSAEN 69
S
Sbjct: 58 GNHASVIV 65
>gi|15800338|ref|NP_286350.1| cold shock protein CspE [Escherichia coli O157:H7 EDL933]
gi|15829916|ref|NP_308689.1| cold shock protein CspE [Escherichia coli O157:H7 str. Sakai]
gi|16128606|ref|NP_415156.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. MG1655]
gi|30062187|ref|NP_836358.1| cold shock protein CspE [Shigella flexneri 2a str. 2457T]
gi|56479711|ref|NP_706586.2| cold shock protein CspE [Shigella flexneri 2a str. 301]
gi|74311159|ref|YP_309578.1| cold shock protein CspE [Shigella sonnei Ss046]
gi|82543070|ref|YP_407017.1| cold shock protein CspE [Shigella boydii Sb227]
gi|82775893|ref|YP_402240.1| cold shock protein CspE [Shigella dysenteriae Sd197]
gi|89107492|ref|AP_001272.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. W3110]
gi|110640853|ref|YP_668581.1| cold shock protein CspE [Escherichia coli 536]
gi|157157595|ref|YP_001461790.1| cold shock protein CspE [Escherichia coli E24377A]
gi|157160119|ref|YP_001457437.1| cold shock protein CspE [Escherichia coli HS]
gi|161486286|ref|NP_752643.2| cold shock protein CspE [Escherichia coli CFT073]
gi|161504197|ref|YP_001571309.1| cold shock protein CspE [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|168752651|ref|ZP_02777673.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113]
gi|168754726|ref|ZP_02779733.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401]
gi|168770227|ref|ZP_02795234.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486]
gi|168774688|ref|ZP_02799695.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196]
gi|168779115|ref|ZP_02804122.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076]
gi|168786472|ref|ZP_02811479.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869]
gi|168798185|ref|ZP_02823192.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508]
gi|170021018|ref|YP_001725972.1| cold shock protein CspE [Escherichia coli ATCC 8739]
gi|170080204|ref|YP_001729524.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. DH10B]
gi|170080305|ref|YP_001729625.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. DH10B]
gi|170682098|ref|YP_001742740.1| cold shock protein CspE [Escherichia coli SMS-3-5]
gi|170767751|ref|ZP_02902204.1| cold shock protein CspE [Escherichia albertii TW07627]
gi|187731707|ref|YP_001879293.1| cold shock protein CspE [Shigella boydii CDC 3083-94]
gi|188493277|ref|ZP_03000547.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|191167329|ref|ZP_03029145.1| cold shock protein CspE [Escherichia coli B7A]
gi|191172339|ref|ZP_03033881.1| cold shock protein CspE [Escherichia coli F11]
gi|193063391|ref|ZP_03044481.1| cold shock protein CspE [Escherichia coli E22]
gi|193069066|ref|ZP_03050024.1| cold shock protein CspE [Escherichia coli E110019]
gi|194427975|ref|ZP_03060520.1| cold shock protein CspE [Escherichia coli B171]
gi|194432522|ref|ZP_03064808.1| cold shock protein CspE [Shigella dysenteriae 1012]
gi|194437525|ref|ZP_03069622.1| cold shock protein CspE [Escherichia coli 101-1]
gi|195936173|ref|ZP_03081555.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4024]
gi|208816170|ref|ZP_03257349.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045]
gi|208823205|ref|ZP_03263523.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042]
gi|209399192|ref|YP_002269259.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115]
gi|209917882|ref|YP_002291966.1| cold shock protein CspE [Escherichia coli SE11]
gi|215485665|ref|YP_002328096.1| cold shock protein CspE [Escherichia coli O127:H6 str. E2348/69]
gi|217324540|ref|ZP_03440624.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588]
gi|218549799|ref|YP_002383590.1| cold shock protein CspE [Escherichia fergusonii ATCC 35469]
gi|218553166|ref|YP_002386079.1| cold shock protein CspE [Escherichia coli IAI1]
gi|218557563|ref|YP_002390476.1| cold shock protein CspE [Escherichia coli S88]
gi|218688447|ref|YP_002396659.1| cold shock protein CspE [Escherichia coli ED1a]
gi|218694064|ref|YP_002401731.1| cold shock protein CspE [Escherichia coli 55989]
gi|218698996|ref|YP_002406625.1| cold shock protein CspE [Escherichia coli IAI39]
gi|218703957|ref|YP_002411476.1| cold shock protein CspE [Escherichia coli UMN026]
gi|227884397|ref|ZP_04002202.1| cold shock protein CspE [Escherichia coli 83972]
gi|238899902|ref|YP_002925698.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
gi|253774390|ref|YP_003037221.1| cold shock protein CspE [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254160706|ref|YP_003043814.1| cold shock protein CspE [Escherichia coli B str. REL606]
gi|254791790|ref|YP_003076627.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14359]
gi|256020576|ref|ZP_05434441.1| cold shock protein CspE [Shigella sp. D9]
gi|256023764|ref|ZP_05437629.1| cold shock protein CspE [Escherichia sp. 4_1_40B]
gi|260842850|ref|YP_003220628.1| DNA-binding transcriptional repressor CspE [Escherichia coli
O103:H2 str. 12009]
gi|260853876|ref|YP_003227767.1| DNA-binding transcriptional repressor CspE [Escherichia coli
O26:H11 str. 11368]
gi|260866772|ref|YP_003233174.1| DNA-binding transcriptional repressor CspE [Escherichia coli
O111:H- str. 11128]
gi|261224091|ref|ZP_05938372.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK2000]
gi|261257785|ref|ZP_05950318.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK966]
gi|291281575|ref|YP_003498393.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str.
CB9615]
gi|293403886|ref|ZP_06647880.1| cold shock-like protein cspE [Escherichia coli FVEC1412]
gi|293408749|ref|ZP_06652588.1| cold shock protein cspE [Escherichia coli B354]
gi|293413920|ref|ZP_06656569.1| cold shock-like protein cspE [Escherichia coli B185]
gi|293418735|ref|ZP_06661170.1| cold shock protein [Escherichia coli B088]
gi|298379662|ref|ZP_06989267.1| cold shock protein CspG [Escherichia coli FVEC1302]
gi|300817859|ref|ZP_07098073.1| cold shock protein CspE [Escherichia coli MS 107-1]
gi|300823062|ref|ZP_07103196.1| cold shock protein CspE [Escherichia coli MS 119-7]
gi|300901127|ref|ZP_07119236.1| cold shock protein CspE [Escherichia coli MS 198-1]
gi|300907798|ref|ZP_07125415.1| cold shock protein CspE [Escherichia coli MS 84-1]
gi|300920567|ref|ZP_07136990.1| cold shock protein CspE [Escherichia coli MS 115-1]
gi|300927278|ref|ZP_07143006.1| cold shock protein CspE [Escherichia coli MS 182-1]
gi|300931553|ref|ZP_07146869.1| cold shock protein CspE [Escherichia coli MS 187-1]
gi|300939622|ref|ZP_07154275.1| cold shock protein CspE [Escherichia coli MS 21-1]
gi|300951119|ref|ZP_07164985.1| cold shock protein CspE [Escherichia coli MS 116-1]
gi|300959188|ref|ZP_07171269.1| cold shock protein CspE [Escherichia coli MS 175-1]
gi|300990086|ref|ZP_07179098.1| cold shock protein CspE [Escherichia coli MS 45-1]
gi|300996792|ref|ZP_07181533.1| cold shock protein CspE [Escherichia coli MS 200-1]
gi|301025248|ref|ZP_07188814.1| cold shock protein CspE [Escherichia coli MS 69-1]
gi|301028903|ref|ZP_07192073.1| cold shock protein CspE [Escherichia coli MS 196-1]
gi|301049818|ref|ZP_07196758.1| cold shock protein CspE [Escherichia coli MS 185-1]
gi|301302102|ref|ZP_07208235.1| cold shock protein CspE [Escherichia coli MS 124-1]
gi|301329140|ref|ZP_07222141.1| cold shock protein CspE [Escherichia coli MS 78-1]
gi|301643967|ref|ZP_07243991.1| cold shock protein CspE [Escherichia coli MS 146-1]
gi|306812944|ref|ZP_07447137.1| cold shock protein CspE [Escherichia coli NC101]
gi|307137241|ref|ZP_07496597.1| cold shock protein CspE [Escherichia coli H736]
gi|307312660|ref|ZP_07592292.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|309785945|ref|ZP_07680574.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
gi|309795509|ref|ZP_07689926.1| cold shock protein CspE [Escherichia coli MS 145-7]
gi|312965070|ref|ZP_07779307.1| cold shock-like protein cspI [Escherichia coli 2362-75]
gi|312970704|ref|ZP_07784885.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|331656651|ref|ZP_08357613.1| cold shock protein [Escherichia coli TA206]
gi|331661988|ref|ZP_08362911.1| cold shock protein [Escherichia coli TA143]
gi|331666976|ref|ZP_08367850.1| cold shock protein [Escherichia coli TA271]
gi|331682045|ref|ZP_08382669.1| cold shock protein [Escherichia coli H299]
gi|71154156|sp|P0A974|CSPE_ECO57 RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|71154157|sp|P0A973|CSPE_ECOL6 RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|71154158|sp|P0A972|CSPE_ECOLI RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|71154159|sp|P0A975|CSPE_SHIFL RecName: Full=Cold shock-like protein CspE; Short=CSP-E
gi|12513525|gb|AAG54958.1|AE005242_2 cold shock protein [Escherichia coli O157:H7 str. EDL933]
gi|471099|dbj|BAA05856.1| CspE (MsmC) [Escherichia coli]
gi|833769|gb|AAA67556.1| gicA [Escherichia coli str. K-12 substr. W3110]
gi|1651256|dbj|BAA35266.1| DNA-binding transcriptional repressor [Escherichia coli str. K12
substr. W3110]
gi|1786841|gb|AAC73724.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. MG1655]
gi|3851642|gb|AAC72388.1| unknown [Vibrio cholerae]
gi|13360120|dbj|BAB34085.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
gi|26986712|gb|AAN86720.1| CspE [Escherichia coli]
gi|30040432|gb|AAP16164.1| cold shock protein [Shigella flexneri 2a str. 2457T]
gi|56383262|gb|AAN42293.2| cold shock protein [Shigella flexneri 2a str. 301]
gi|73854636|gb|AAZ87343.1| cold shock protein [Shigella sonnei Ss046]
gi|81240041|gb|ABB60751.1| cold shock protein [Shigella dysenteriae Sd197]
gi|81244481|gb|ABB65189.1| cold shock protein [Shigella boydii Sb227]
gi|110342445|gb|ABG68682.1| cold shock-like protein CspE [Escherichia coli 536]
gi|157065799|gb|ABV05054.1| cold shock protein CspE [Escherichia coli HS]
gi|157079625|gb|ABV19333.1| cold shock protein CspE [Escherichia coli E24377A]
gi|160865544|gb|ABX22167.1| hypothetical protein SARI_02304 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|169755946|gb|ACA78645.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169888039|gb|ACB01746.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. DH10B]
gi|169888140|gb|ACB01847.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. DH10B]
gi|170123239|gb|EDS92170.1| cold shock protein CspE [Escherichia albertii TW07627]
gi|170519816|gb|ACB17994.1| cold shock protein CspE [Escherichia coli SMS-3-5]
gi|187428699|gb|ACD07973.1| cold shock protein CspE [Shigella boydii CDC 3083-94]
gi|187769726|gb|EDU33570.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196]
gi|188013582|gb|EDU51704.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113]
gi|188488476|gb|EDU63579.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189002843|gb|EDU71829.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076]
gi|189358116|gb|EDU76535.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401]
gi|189360875|gb|EDU79294.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486]
gi|189373655|gb|EDU92071.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869]
gi|189379324|gb|EDU97740.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508]
gi|190902578|gb|EDV62311.1| cold shock protein CspE [Escherichia coli B7A]
gi|190907438|gb|EDV67035.1| cold shock protein CspE [Escherichia coli F11]
gi|192930975|gb|EDV83579.1| cold shock protein CspE [Escherichia coli E22]
gi|192957610|gb|EDV88055.1| cold shock protein CspE [Escherichia coli E110019]
gi|194413950|gb|EDX30227.1| cold shock protein CspE [Escherichia coli B171]
gi|194419083|gb|EDX35166.1| cold shock protein CspE [Shigella dysenteriae 1012]
gi|194423694|gb|EDX39684.1| cold shock protein CspE [Escherichia coli 101-1]
gi|208732818|gb|EDZ81506.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045]
gi|208737398|gb|EDZ85082.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042]
gi|209160592|gb|ACI38025.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115]
gi|209777218|gb|ACI86921.1| cold shock protein [Escherichia coli]
gi|209777220|gb|ACI86922.1| cold shock protein [Escherichia coli]
gi|209777222|gb|ACI86923.1| cold shock protein [Escherichia coli]
gi|209777224|gb|ACI86924.1| cold shock protein [Escherichia coli]
gi|209777226|gb|ACI86925.1| cold shock protein [Escherichia coli]
gi|209911141|dbj|BAG76215.1| cold shock-like protein [Escherichia coli SE11]
gi|215263737|emb|CAS08072.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6
str. E2348/69]
gi|217320761|gb|EEC29185.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588]
gi|218350796|emb|CAU96488.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
gi|218357340|emb|CAQ89977.1| DNA-binding transcriptional repressor [Escherichia fergusonii
ATCC 35469]
gi|218359934|emb|CAQ97477.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
gi|218364332|emb|CAR02005.1| DNA-binding transcriptional repressor [Escherichia coli S88]
gi|218368982|emb|CAR16736.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
gi|218426011|emb|CAR06828.1| DNA-binding transcriptional repressor [Escherichia coli ED1a]
gi|218431054|emb|CAR11930.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
gi|222032384|emb|CAP75123.1| Cold shock-like protein cspE [Escherichia coli LF82]
gi|227838483|gb|EEJ48949.1| cold shock protein CspE [Escherichia coli 83972]
gi|238860974|gb|ACR62972.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
gi|242376400|emb|CAQ31099.1| transcription antiterminator and regulator of RNA stability
[Escherichia coli BL21(DE3)]
gi|253325434|gb|ACT30036.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972607|gb|ACT38278.1| cold shock protein E [Escherichia coli B str. REL606]
gi|253976801|gb|ACT42471.1| cold shock protein E [Escherichia coli BL21(DE3)]
gi|254591190|gb|ACT70551.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7
str. TW14359]
gi|257752525|dbj|BAI24027.1| DNA-binding transcriptional repressor CspE [Escherichia coli
O26:H11 str. 11368]
gi|257757997|dbj|BAI29494.1| DNA-binding transcriptional repressor CspE [Escherichia coli
O103:H2 str. 12009]
gi|257763128|dbj|BAI34623.1| DNA-binding transcriptional repressor CspE [Escherichia coli
O111:H- str. 11128]
gi|260450208|gb|ACX40630.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|281177773|dbj|BAI54103.1| cold shock-like protein [Escherichia coli SE15]
gi|284920424|emb|CBG33485.1| cold shock-like protein [Escherichia coli 042]
gi|290761448|gb|ADD55409.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str.
CB9615]
gi|291325263|gb|EFE64678.1| cold shock protein [Escherichia coli B088]
gi|291428472|gb|EFF01497.1| cold shock-like protein cspE [Escherichia coli FVEC1412]
gi|291433978|gb|EFF06951.1| cold shock-like protein cspE [Escherichia coli B185]
gi|291471927|gb|EFF14410.1| cold shock protein cspE [Escherichia coli B354]
gi|294494060|gb|ADE92816.1| cold shock protein CspE [Escherichia coli IHE3034]
gi|298279360|gb|EFI20868.1| cold shock protein CspG [Escherichia coli FVEC1302]
gi|299878114|gb|EFI86325.1| cold shock protein CspE [Escherichia coli MS 196-1]
gi|300298413|gb|EFJ54798.1| cold shock protein CspE [Escherichia coli MS 185-1]
gi|300304394|gb|EFJ58914.1| cold shock protein CspE [Escherichia coli MS 200-1]
gi|300314212|gb|EFJ63996.1| cold shock protein CspE [Escherichia coli MS 175-1]
gi|300355435|gb|EFJ71305.1| cold shock protein CspE [Escherichia coli MS 198-1]
gi|300396117|gb|EFJ79655.1| cold shock protein CspE [Escherichia coli MS 69-1]
gi|300400487|gb|EFJ84025.1| cold shock protein CspE [Escherichia coli MS 84-1]
gi|300407161|gb|EFJ90699.1| cold shock protein CspE [Escherichia coli MS 45-1]
gi|300412430|gb|EFJ95740.1| cold shock protein CspE [Escherichia coli MS 115-1]
gi|300416766|gb|EFK00077.1| cold shock protein CspE [Escherichia coli MS 182-1]
gi|300449605|gb|EFK13225.1| cold shock protein CspE [Escherichia coli MS 116-1]
gi|300455497|gb|EFK18990.1| cold shock protein CspE [Escherichia coli MS 21-1]
gi|300460695|gb|EFK24188.1| cold shock protein CspE [Escherichia coli MS 187-1]
gi|300524411|gb|EFK45480.1| cold shock protein CspE [Escherichia coli MS 119-7]
gi|300529556|gb|EFK50618.1| cold shock protein CspE [Escherichia coli MS 107-1]
gi|300842654|gb|EFK70414.1| cold shock protein CspE [Escherichia coli MS 124-1]
gi|300844528|gb|EFK72288.1| cold shock protein CspE [Escherichia coli MS 78-1]
gi|301077663|gb|EFK92469.1| cold shock protein CspE [Escherichia coli MS 146-1]
gi|305853707|gb|EFM54146.1| cold shock protein CspE [Escherichia coli NC101]
gi|306907362|gb|EFN37867.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|307552494|gb|ADN45269.1| cold shock-like protein CspE [Escherichia coli ABU 83972]
gi|307627938|gb|ADN72242.1| cold shock protein CspE [Escherichia coli UM146]
gi|308120884|gb|EFO58146.1| cold shock protein CspE [Escherichia coli MS 145-7]
gi|308926056|gb|EFP71534.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
gi|309700862|emb|CBJ00159.1| cold shock-like protein [Escherichia coli ETEC H10407]
gi|310337353|gb|EFQ02491.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|312290161|gb|EFR18044.1| cold shock-like protein cspI [Escherichia coli 2362-75]
gi|312945171|gb|ADR25998.1| cold shock protein CspE [Escherichia coli O83:H1 str. NRG 857C]
gi|313649731|gb|EFS14155.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
gi|315059879|gb|ADT74206.1| DNA-binding transcriptional repressor [Escherichia coli W]
gi|315135289|dbj|BAJ42448.1| cold shock protein CspE [Escherichia coli DH1]
gi|315255074|gb|EFU35042.1| cold shock protein CspE [Escherichia coli MS 85-1]
gi|315287050|gb|EFU46465.1| cold shock protein CspE [Escherichia coli MS 110-3]
gi|315292127|gb|EFU51479.1| cold shock protein CspE [Escherichia coli MS 153-1]
gi|315299117|gb|EFU58371.1| cold shock protein CspE [Escherichia coli MS 16-3]
gi|315616459|gb|EFU97076.1| cold shock-like protein cspI [Escherichia coli 3431]
gi|320175134|gb|EFW50246.1| Cold shock protein CspE [Shigella dysenteriae CDC 74-1112]
gi|320178413|gb|EFW53381.1| Cold shock protein CspE [Shigella boydii ATCC 9905]
gi|320185402|gb|EFW60172.1| Cold shock protein CspE [Shigella flexneri CDC 796-83]
gi|320193030|gb|EFW67670.1| Cold shock protein CspE [Escherichia coli O157:H7 str. EC1212]
gi|320194194|gb|EFW68826.1| Cold shock protein CspE [Escherichia coli WV_060327]
gi|320198250|gb|EFW72854.1| Cold shock protein CspE [Escherichia coli EC4100B]
gi|320638073|gb|EFX07837.1| cold shock protein CspE [Escherichia coli O157:H7 str. G5101]
gi|320643479|gb|EFX12649.1| cold shock protein CspE [Escherichia coli O157:H- str. 493-89]
gi|320648814|gb|EFX17441.1| cold shock protein CspE [Escherichia coli O157:H- str. H 2687]
gi|320654400|gb|EFX22447.1| cold shock protein CspE [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320660081|gb|EFX27611.1| cold shock protein CspE [Escherichia coli O55:H7 str. USDA 5905]
gi|320664878|gb|EFX32013.1| cold shock protein CspE [Escherichia coli O157:H7 str. LSU-61]
gi|323153655|gb|EFZ39903.1| cold shock-like protein cspI [Escherichia coli EPECa14]
gi|323158923|gb|EFZ44934.1| cold shock-like protein cspI [Escherichia coli E128010]
gi|323164078|gb|EFZ49886.1| cold shock-like protein cspI [Shigella sonnei 53G]
gi|323170751|gb|EFZ56401.1| cold shock-like protein cspI [Escherichia coli LT-68]
gi|323179900|gb|EFZ65457.1| cold shock-like protein cspI [Escherichia coli 1180]
gi|323184883|gb|EFZ70251.1| cold shock-like protein cspI [Escherichia coli 1357]
gi|323191262|gb|EFZ76526.1| cold shock-like protein cspI [Escherichia coli RN587/1]
gi|323379557|gb|ADX51825.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323938386|gb|EGB34640.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323943038|gb|EGB39197.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323945099|gb|EGB41161.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323952798|gb|EGB48666.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|323958382|gb|EGB54088.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|323963193|gb|EGB58761.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323967571|gb|EGB62987.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|323972078|gb|EGB67292.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|323976394|gb|EGB71484.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
gi|324006340|gb|EGB75559.1| cold shock protein CspE [Escherichia coli MS 57-2]
gi|324010499|gb|EGB79718.1| cold shock protein CspE [Escherichia coli MS 60-1]
gi|324016114|gb|EGB85333.1| cold shock protein CspE [Escherichia coli MS 117-3]
gi|324114747|gb|EGC08715.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|324116698|gb|EGC10613.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|325498195|gb|EGC96054.1| cold shock protein CspE [Escherichia fergusonii ECD227]
gi|326341375|gb|EGD65167.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1044]
gi|326345847|gb|EGD69586.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1125]
gi|327254308|gb|EGE65930.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
gi|330910385|gb|EGH38895.1| cold shock protein CspE [Escherichia coli AA86]
gi|331054899|gb|EGI26908.1| cold shock protein [Escherichia coli TA206]
gi|331060410|gb|EGI32374.1| cold shock protein [Escherichia coli TA143]
gi|331066200|gb|EGI38084.1| cold shock protein [Escherichia coli TA271]
gi|331080724|gb|EGI51898.1| cold shock protein [Escherichia coli H299]
gi|332094296|gb|EGI99347.1| cold shock-like protein cspI [Shigella boydii 5216-82]
gi|332096862|gb|EGJ01852.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
gi|332341970|gb|AEE55304.1| cold shock-like protein CspI [Escherichia coli UMNK88]
gi|332761006|gb|EGJ91294.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
gi|332761185|gb|EGJ91471.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
gi|332763377|gb|EGJ93617.1| cold shock-like protein cspI [Shigella flexneri K-671]
gi|332768274|gb|EGJ98459.1| transcription antiterminator and regulator of RNA stability
[Shigella flexneri 2930-71]
gi|333007465|gb|EGK26945.1| cold shock-like protein cspI [Shigella flexneri VA-6]
gi|333008038|gb|EGK27514.1| cold shock-like protein cspI [Shigella flexneri K-218]
gi|333010035|gb|EGK29470.1| cold shock-like protein cspI [Shigella flexneri K-272]
gi|333020868|gb|EGK40128.1| cold shock-like protein cspI [Shigella flexneri K-227]
gi|333021570|gb|EGK40820.1| cold shock-like protein cspI [Shigella flexneri K-304]
Length = 69
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|329894353|ref|ZP_08270223.1| putative Cold-shock protein [gamma proteobacterium IMCC3088]
gi|328923149|gb|EGG30472.1| putative Cold-shock protein [gamma proteobacterium IMCC3088]
Length = 134
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI + SGD++F+H A+ + G +L +G V++ D
Sbjct: 69 RETGTVKWFNATKGFGFIVCD----SGDEIFVHFRALRNGGRRSLKDGLPVSFVITSGDR 124
Query: 62 NGKYSAENLKLV 73
A +++++
Sbjct: 125 G--PQASDVEIL 134
>gi|308188556|ref|YP_003932687.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
gi|308059066|gb|ADO11238.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
Length = 70
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + L EGQ V++
Sbjct: 6 TGLVKWFNSDKGFGFITPDD---GSKDVFVHFSAIQADNYKTLDEGQKVSFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVTAL 70
>gi|222056386|ref|YP_002538748.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
gi|221565675|gb|ACM21647.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
Length = 66
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF H SA++ G +L EG V ++ +
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFCHFSAISGEGFKSLAEGDRVQFEVTKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANVTRI 66
>gi|94968551|ref|YP_590599.1| cold-shock DNA-binding protein family protein [Candidatus
Koribacter versatilis Ellin345]
gi|94550601|gb|ABF40525.1| cold-shock DNA-binding protein family [Candidatus Koribacter
versatilis Ellin345]
Length = 66
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI E G DVF+H SA++S G +L EG V ++ V+
Sbjct: 2 KGTVKWFNNAKGYGFIGRE----EGPDVFVHYSAISSEGYKSLAEGDAVEFEIVEGQKG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -PQAGNV 62
>gi|89097883|ref|ZP_01170770.1| cold shock protein [Bacillus sp. NRRL B-14911]
gi|89087385|gb|EAR66499.1| cold shock protein [Bacillus sp. NRRL B-14911]
Length = 66
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFI T G DVF+H SA+ S G +L EG+ VT++ V+ +
Sbjct: 1 MNTGKVKWFNAEKGFGFIE----TSEGQDVFVHFSAIQSEGFKSLEEGEAVTFEIVEGNR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQASNV 63
>gi|254481420|ref|ZP_05094665.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma
proteobacterium HTCC2148]
gi|214038583|gb|EEB79245.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma
proteobacterium HTCC2148]
Length = 70
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFIT E E DVF+H ++ G L EGQ V + ++
Sbjct: 7 GTVKWFNNAKGFGFITRE---EEDADVFVHFRSIEGDGYRTLNEGQEVEFSLIEGPKG-- 61
Query: 65 YSAENLKLV 73
AE++ V
Sbjct: 62 LQAEDVHKV 70
>gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895634|gb|EFG75330.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 137
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDADKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIEPPPS 70
>gi|269960957|ref|ZP_06175326.1| cold shock-like protein CspD [Vibrio harveyi 1DA3]
gi|269834176|gb|EEZ88266.1| cold shock-like protein CspD [Vibrio harveyi 1DA3]
Length = 72
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + D+F H S + G L GQ V+Y+ +
Sbjct: 1 MATGTVKWFNNAKGFGFICSDEEEG---DIFAHYSTIQMDGYRTLKAGQQVSYEVEKGPK 57
Query: 62 NGKYSAENLKLVP 74
A ++ V
Sbjct: 58 G--SHASSVVPVE 68
>gi|241889467|ref|ZP_04776767.1| putative cold shock protein [Gemella haemolysans ATCC 10379]
gi|329768516|ref|ZP_08260004.1| cold shock protein cspA [Gemella haemolysans M341]
gi|241863863|gb|EER68245.1| putative cold shock protein [Gemella haemolysans ATCC 10379]
gi|328836666|gb|EGF86323.1| cold shock protein cspA [Gemella haemolysans M341]
Length = 66
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI D+F+H S++ G L EG V ++
Sbjct: 1 MKQGTVKWFNEEKGFGFIEVA----GEKDIFVHFSSIKKDGFKTLKEGDKVEFEVEDGAR 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 G--PQAANVVVL 66
>gi|134300911|ref|YP_001114407.1| cold-shock DNA-binding domain-containing protein
[Desulfotomaculum reducens MI-1]
gi|134053611|gb|ABO51582.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
MI-1]
Length = 65
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFI E G DVF+H SA+ G +L EGQ V +D V+
Sbjct: 3 GKVKWFNAEKGYGFIERE----EGGDVFVHFSAIQEEGFKSLAEGQEVEFDIVEGARG-- 56
Query: 65 YSAENLKL 72
A N+
Sbjct: 57 PQAANVTK 64
>gi|117619345|ref|YP_858396.1| hypothetical protein AHA_3962 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560752|gb|ABK37700.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 70
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N +KG+GFI+P DVF+H SA+ + G L EGQ V + Q
Sbjct: 6 TGTVKFFNAEKGFGFISPTD---GSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQGQKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVVAL 70
>gi|255523658|ref|ZP_05390625.1| cold-shock DNA-binding domain protein [Clostridium
carboxidivorans P7]
gi|255512713|gb|EET88986.1| cold-shock DNA-binding domain protein [Clostridium
carboxidivorans P7]
Length = 65
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G DVF+H S + S G +L EGQ V++D V+
Sbjct: 2 NGTVKWFNGEKGFGFITGED----GKDVFVHFSQIKSEGYKSLEEGQEVSFDAVKGPKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -LQAENVTIL 65
>gi|30019286|ref|NP_830917.1| cold shock protein [Bacillus cereus ATCC 14579]
gi|30261242|ref|NP_843619.1| cold shock protein CspA [Bacillus anthracis str. Ames]
gi|47526404|ref|YP_017753.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
gi|49184074|ref|YP_027326.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
gi|49479225|ref|YP_035367.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|65318514|ref|ZP_00391473.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
gi|118476719|ref|YP_893870.1| cold-shock DNA-binding protein family protein [Bacillus
thuringiensis str. Al Hakam]
gi|167635405|ref|ZP_02393719.1| cold shock protein CspA [Bacillus anthracis str. A0442]
gi|167640251|ref|ZP_02398517.1| cold shock protein CspA [Bacillus anthracis str. A0193]
gi|170688025|ref|ZP_02879237.1| cold shock protein CspA [Bacillus anthracis str. A0465]
gi|170707660|ref|ZP_02898112.1| cold shock protein CspA [Bacillus anthracis str. A0389]
gi|190566579|ref|ZP_03019496.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
gi|196036231|ref|ZP_03103630.1| cold shock protein CspA [Bacillus cereus W]
gi|196037508|ref|ZP_03104819.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
gi|196044203|ref|ZP_03111439.1| cold shock protein CspA [Bacillus cereus 03BB108]
gi|227816020|ref|YP_002816029.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
gi|228913810|ref|ZP_04077435.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926273|ref|ZP_04089347.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932510|ref|ZP_04095391.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944843|ref|ZP_04107206.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229090176|ref|ZP_04221425.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
gi|229120758|ref|ZP_04250001.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
gi|229126542|ref|ZP_04255556.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
gi|229183437|ref|ZP_04310662.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
gi|229604794|ref|YP_002865665.1| cold shock protein CspA [Bacillus anthracis str. A0248]
gi|254682697|ref|ZP_05146558.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066]
gi|254725490|ref|ZP_05187272.1| cold shock protein CspA [Bacillus anthracis str. A1055]
gi|254734115|ref|ZP_05191828.1| cold shock protein CspA [Bacillus anthracis str. Western North
America USA6153]
gi|254740241|ref|ZP_05197933.1| cold shock protein CspA [Bacillus anthracis str. Kruger B]
gi|254753581|ref|ZP_05205617.1| cold shock protein CspA [Bacillus anthracis str. Vollum]
gi|254758678|ref|ZP_05210705.1| cold shock protein CspA [Bacillus anthracis str. Australia 94]
gi|301052771|ref|YP_003790982.1| cold shock protein [Bacillus anthracis CI]
gi|49035524|sp|Q81GQ6|CSPA_BACCR RecName: Full=Major cold shock protein CspA
gi|49035527|sp|Q81TW8|CSPA_BACAN RecName: Full=Major cold shock protein CspA
gi|29894829|gb|AAP08118.1| Cold shock protein [Bacillus cereus ATCC 14579]
gi|30254856|gb|AAP25105.1| cold shock protein CspA [Bacillus anthracis str. Ames]
gi|47501552|gb|AAT30228.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
gi|49178001|gb|AAT53377.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
gi|49330781|gb|AAT61427.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|118415944|gb|ABK84363.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
str. Al Hakam]
gi|167511852|gb|EDR87232.1| cold shock protein CspA [Bacillus anthracis str. A0193]
gi|167529233|gb|EDR91986.1| cold shock protein CspA [Bacillus anthracis str. A0442]
gi|170127435|gb|EDS96310.1| cold shock protein CspA [Bacillus anthracis str. A0389]
gi|170667920|gb|EDT18671.1| cold shock protein CspA [Bacillus anthracis str. A0465]
gi|190562131|gb|EDV16099.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
gi|195991206|gb|EDX55175.1| cold shock protein CspA [Bacillus cereus W]
gi|196024842|gb|EDX63513.1| cold shock protein CspA [Bacillus cereus 03BB108]
gi|196031750|gb|EDX70346.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
gi|227005778|gb|ACP15521.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
gi|228600021|gb|EEK57616.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
gi|228656931|gb|EEL12755.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
gi|228662763|gb|EEL18360.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
gi|228693159|gb|EEL46871.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
gi|228814871|gb|EEM61129.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827200|gb|EEM72953.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833370|gb|EEM78933.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845749|gb|EEM90775.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229269202|gb|ACQ50839.1| cold shock protein CspA [Bacillus anthracis str. A0248]
gi|300374940|gb|ADK03844.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
Length = 67
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ + +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|304403836|ref|ZP_07385498.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346814|gb|EFM12646.1| cold-shock DNA-binding domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 65
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V +D + G
Sbjct: 2 KGTVKWFNAEKGYGFIQVEN----GEDVFVHFSAITGEGFKTLEEGQAVEFDIT-DGNRG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|157371292|ref|YP_001479281.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|270262466|ref|ZP_06190737.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
gi|293395496|ref|ZP_06639780.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|320539351|ref|ZP_08039020.1| putative cold-shock DNA-binding domain-containing protein
[Serratia symbiotica str. Tucson]
gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
gi|270043150|gb|EFA16243.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
gi|291422180|gb|EFE95425.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|320030476|gb|EFW12486.1| putative cold-shock DNA-binding domain-containing protein
[Serratia symbiotica str. Tucson]
Length = 70
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 4 MIKGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAK 60
Query: 62 NGKYSAENLKLV 73
SA N+ +
Sbjct: 61 G--PSAANVTAI 70
>gi|296394808|ref|YP_003659692.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296181955|gb|ADG98861.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
44985]
Length = 68
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ +G++KW+N +KG+GFI P+ G D+F+H S + S G L E Q V ++ +D
Sbjct: 1 MPQGTVKWFNEEKGFGFIAPDD---GGKDLFVHFSGIVSEGGFRTLQENQRVKFETQASD 57
Query: 61 ANGKYSAENLKLV 73
A ++ ++
Sbjct: 58 RG--PQAVSVTVI 68
>gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ + GDD+F+H++++ + G +L EG++V + ++ +
Sbjct: 14 ETGKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQV-ESSED 69
Query: 63 GKYSAENLK 71
G+ A +
Sbjct: 70 GRTKALAVT 78
>gi|320105451|ref|YP_004181041.1| cold-shock DNA-binding domain-containing protein [Terriglobus
saanensis SP1PR4]
gi|319923972|gb|ADV81047.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
SP1PR4]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ G+DVF+H +A+ S G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFLSRAN----GEDVFVHHTAIQSNGFRSLQEGQNVQFNVVKGPK 56
Query: 62 NGKYSAENLKL 72
+ AEN+++
Sbjct: 57 G--WQAENVQV 65
>gi|302384852|ref|YP_003820674.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
gi|302195480|gb|ADL03051.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N KGYGFI + +G++VF+H S + + G L EGQ VTY+ + +
Sbjct: 1 MNNGTVKWFNGAKGYGFIVND---ATGEEVFVHFSGIVADGYKTLEEGQKVTYETTEGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQAVNV 64
>gi|238790450|ref|ZP_04634220.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
gi|238721476|gb|EEQ13146.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++
Sbjct: 5 KGSVKWFNEAKGFGFITPED---GSKDVFVHFSAIASNGFKTLAEGQRVEFEITTGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|229016986|ref|ZP_04173906.1| Cold shock-like protein cspB [Bacillus cereus AH1273]
gi|229023167|ref|ZP_04179678.1| Cold shock-like protein cspB [Bacillus cereus AH1272]
gi|228738092|gb|EEL88577.1| Cold shock-like protein cspB [Bacillus cereus AH1272]
gi|228744257|gb|EEL94339.1| Cold shock-like protein cspB [Bacillus cereus AH1273]
Length = 65
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI +GS DDVF+H SA+ G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEMDGS----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|225027993|ref|ZP_03717185.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353]
gi|224954707|gb|EEG35916.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353]
Length = 89
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KGYGFI E SG D+F+H + + G +L EG V +D VQ +
Sbjct: 22 MFKGTVKWFNNQKGYGFIQDE----SGKDIFVHYTGLNMPGFKSLEEGNEVEFDIVQGEK 77
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 78 G--PQASNVVKL 87
>gi|195970700|gb|ACG60738.1| putative cold shock protein [Streptomyces flavoviridis]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|153876303|ref|ZP_02003697.1| Cold shock protein [Beggiatoa sp. PS]
gi|152067232|gb|EDN66302.1| Cold shock protein [Beggiatoa sp. PS]
Length = 71
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF+H +++ + G +L EGQ VT + Q
Sbjct: 7 TGTVKWFNDSKGFGFIEQE---AGGPDVFVHHTSIQADGFKSLQEGQKVTMEVTQGQKG- 62
Query: 64 KYSAENL 70
AEN+
Sbjct: 63 -LQAENV 68
>gi|126666188|ref|ZP_01737168.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17]
gi|126629510|gb|EBA00128.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17]
Length = 196
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + SGD++F+H A+ +G L +GQLV + + D
Sbjct: 132 GTVKWFNVKKGFGFIVRD----SGDEIFVHFRAIRGSGRRVLRQGQLVRFSVIDADKG-- 185
Query: 65 YSAENLKLVPK 75
A+N+ ++ +
Sbjct: 186 LQADNVSILSE 196
>gi|39995317|ref|NP_951268.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
gi|39982079|gb|AAR33541.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
gi|298504323|gb|ADI83046.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
KN400]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF+H SA+ G +L EG VT++ +
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANVTRI 66
>gi|293402171|ref|ZP_06646309.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304278|gb|EFE45529.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKG+GFIT + G+D+F+H + + G L EG V++D ND
Sbjct: 1 MSTGKVKWFNADKGFGFITSD----EGNDIFVHYTEIQGNGFRTLEEGAKVSFDIKTNDR 56
Query: 62 NGKYSAENL 70
+ N+
Sbjct: 57 GDHAANVNV 65
>gi|148266390|ref|YP_001233096.1| cold-shock DNA-binding domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399890|gb|ABQ28523.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
Rf4]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + GDDVF+H SA+ G +L EG+ VT++ +
Sbjct: 1 MANGTVKWFNDSKGFGFIEQDN----GDDVFVHFSAIMGDGFKSLAEGEAVTFEVQKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--LQAANVNRV 66
>gi|116620045|ref|YP_822201.1| cold-shock DNA-binding protein family protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116223207|gb|ABJ81916.1| cold-shock DNA-binding protein family [Candidatus Solibacter
usitatus Ellin6076]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFI E G+DVF+H SA++++G +L EG V++ +
Sbjct: 1 MRETGTVKWFNAGKGFGFIQREN----GEDVFVHFSAISASGYRSLDEGARVSFVVKKGP 56
Query: 61 ANGKYSAENLKL 72
AE++
Sbjct: 57 KG--LQAEDVSP 66
>gi|254448335|ref|ZP_05061796.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
HTCC5015]
gi|198261948|gb|EDY86232.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
HTCC5015]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFI E G DVF+H SA+ G +L EGQ V+++
Sbjct: 6 NGTVKWFNDDKGFGFIQQE----GGPDVFVHFSAINGTGRRSLAEGQAVSFEITDGQKG- 60
Query: 64 KYSAENLKL 72
A N+
Sbjct: 61 -PQASNVTP 68
>gi|94499669|ref|ZP_01306206.1| Cold shock protein [Oceanobacter sp. RED65]
gi|94428423|gb|EAT13396.1| Cold shock protein [Oceanobacter sp. RED65]
Length = 92
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI + E G+D+F H S++ G L GQ V +D +D
Sbjct: 1 MQTGKVKWFNNAKGYGFILSD---EGGEDLFAHYSSIQVEGYKTLKAGQSVQFDTKPSDQ 57
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 58 G--THAINITPLD 68
>gi|32490926|ref|NP_871180.1| cold shock protein CspE [Wigglesworthia glossinidia endosymbiont
of Glossina brevipalpis]
gi|25166132|dbj|BAC24323.1| cspE [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENLKLV 73
SA ++ +
Sbjct: 61 -PSAAHVTTI 69
>gi|330830980|ref|YP_004393932.1| Cold shock-like protein cspE [Aeromonas veronii B565]
gi|328806116|gb|AEB51315.1| Cold shock-like protein cspE [Aeromonas veronii B565]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI G DVF+H S++ S G L EGQ V + Q
Sbjct: 6 TGQVKWFNETKGFGFIE----QSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGKKG- 60
Query: 64 KYSAENLKLV 73
AEN+ LV
Sbjct: 61 -PQAENVTLV 69
>gi|119870591|ref|YP_940543.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
KMS]
gi|126437423|ref|YP_001073114.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
JLS]
gi|119696680|gb|ABL93753.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
gi|126237223|gb|ABO00624.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
Length = 136
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGRVKWYDAEKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L L+ +
Sbjct: 56 G--PQALSLTLIDPPPS 70
>gi|326789721|ref|YP_004307542.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
gi|326540485|gb|ADZ82344.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
DSM 5427]
Length = 65
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI E GDDVF+H +A+ G L EGQ V +D V+ +
Sbjct: 2 TGKVKWFNAEKGFGFIERE----GGDDVFVHFTAIQGDGFKTLEEGQEVNFDIVEGNRG- 56
Query: 64 KYSAENLKL 72
A N+
Sbjct: 57 -PQAANVTK 64
>gi|229118682|ref|ZP_04248034.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3]
gi|228664874|gb|EEL20364.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3]
Length = 65
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + A G
Sbjct: 2 QGKVKWFNAEKGFGFIERED----GEDVFVHFSAIQQDGYKSLEEGQQVKFDIV-DGARG 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVVKL 65
>gi|254380611|ref|ZP_04995977.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
gi|194339522|gb|EDX20488.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELNEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|319400562|gb|EFV88792.1| cold shock protein cspD [Staphylococcus epidermidis FRI909]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFI + G+DVF+H S +A G +L EGQ V +D V+
Sbjct: 1 MNNGTVKWFNADKGFGFIERDN----GNDVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--EQATNVVV 65
>gi|266620956|ref|ZP_06113891.1| cold shock protein B [Clostridium hathewayi DSM 13479]
gi|288867377|gb|EFC99675.1| cold shock protein B [Clostridium hathewayi DSM 13479]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFIT + E+G++VF+H S + + G +L +GQ VT+D Q +
Sbjct: 1 MNKGTVKWFNSSKGYGFITND---ETGEEVFVHFSGIMTDGYKSLEDGQKVTFDTTQGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--IQAVNV 64
>gi|91223643|ref|ZP_01258908.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|91191729|gb|EAS77993.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
Length = 70
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V++ Q +
Sbjct: 6 TGLVKWFNESKGFGFITPDN---GGSDLFVHFKSIVSDGFKTLSEGQKVSFVVEQGNKG- 61
Query: 64 KYSAENLKLV 73
A+N+ LV
Sbjct: 62 -PQADNVTLV 70
>gi|329888180|ref|ZP_08266778.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
ATCC 11568]
gi|328846736|gb|EGF96298.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
ATCC 11568]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+NP KG+GFI P+ G DVF+H +AV AGL L + V Y+
Sbjct: 1 MATGTVKWFNPTKGFGFIQPDT---GGADVFVHITAVQKAGLVGLDDNAKVEYELET--Q 55
Query: 62 NGKYSAENLKLV 73
GK SA +LKL+
Sbjct: 56 RGKTSAVDLKLL 67
>gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus opacus B4]
gi|226243633|dbj|BAH53981.1| cold shock protein [Rhodococcus opacus B4]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI PE DVF+H S + S G L E Q V+++ Q +
Sbjct: 1 MAEGIVKWFNSEKGFGFIAPED---GSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNK 57
Query: 62 NGKYSAENLKLV 73
A + ++
Sbjct: 58 G--PQATGVSVI 67
>gi|291326366|ref|ZP_06124240.2| conserved domain protein [Providencia rettgeri DSM 1131]
gi|291314630|gb|EFE55083.1| conserved domain protein [Providencia rettgeri DSM 1131]
Length = 77
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 13 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQQVEFTIENGAKG- 68
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 69 -PAAANVTAI 77
>gi|109898691|ref|YP_661946.1| cold-shock DNA-binding domain-containing protein
[Pseudoalteromonas atlantica T6c]
gi|109700972|gb|ABG40892.1| cold-shock DNA-binding protein family [Pseudoalteromonas
atlantica T6c]
Length = 84
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE GDD+F H S + G +L GQ V YD Q
Sbjct: 13 MAVGKVKWFNNAKGFGFIVPED---GGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGPK 69
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 70 G--LHAENI 76
>gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|256587235|gb|ACU98368.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
Length = 128
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF+T + G DV++ +SA+ G+ L GQ + + +
Sbjct: 1 MPTGKVKWYDADKGFGFVTED----GGRDVYVRKSALPQ-GVETLKAGQRLEFGIAEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 G--PQALSVRLLDPLPS 70
>gi|261409631|ref|YP_003245872.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|329928767|ref|ZP_08282616.1| cold shock-like protein CspE [Paenibacillus sp. HGF5]
gi|261286094|gb|ACX68065.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
Y412MC10]
gi|328937548|gb|EGG33966.1| cold shock-like protein CspE [Paenibacillus sp. HGF5]
Length = 65
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ S G L EGQ V ++ V+ G
Sbjct: 2 QGKVKWFNAEKGYGFIETED----GGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEGAR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|323703019|ref|ZP_08114675.1| cold-shock DNA-binding domain protein [Desulfotomaculum
nigrificans DSM 574]
gi|323532032|gb|EGB21915.1| cold-shock DNA-binding domain protein [Desulfotomaculum
nigrificans DSM 574]
Length = 65
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V+
Sbjct: 3 GKVKWFNAEKGYGFIERE----EGGDVFVHFSAIQEEGFKSLTEGQEVEFDIVEGARG-- 56
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 57 PQAANVVKL 65
>gi|323136343|ref|ZP_08071425.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322398417|gb|EFY00937.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 70
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI P+ G DVF+H SA+ AGL L EGQ V Y+ V +
Sbjct: 1 MQIGVVKWFNANKGFGFIQPD---AGGADVFVHISALERAGLHGLAEGQKVGYELVVDKR 57
Query: 62 NGKYSAENLKL 72
+GK+SA+ L+L
Sbjct: 58 SGKFSADALQL 68
>gi|238898015|ref|YP_002923695.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465773|gb|ACQ67547.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP+ + DVF+H SA+ +G L EGQ V ++
Sbjct: 5 KGKVKWFNESKGFGFITPDD---NSKDVFVHFSAIQDSGFKTLAEGQGVEFEIADGQKG- 60
Query: 64 KYSAENLKLV 73
SA ++ +
Sbjct: 61 -PSAVDVNKI 69
>gi|188534694|ref|YP_001908491.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
gi|259909319|ref|YP_002649675.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
gi|188029736|emb|CAO97615.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
gi|224964941|emb|CAX56469.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
gi|283479388|emb|CAY75304.1| Cold shock-like protein cspG (CPS-G) [Erwinia pyrifoliae DSM
12163]
gi|310766775|gb|ADP11725.1| Cold shock protein [Erwinia sp. Ejp617]
Length = 70
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI+P DVF+H SA+ + G L EGQ V +
Sbjct: 6 TGLVKWFNAEKGFGFISPTD---GSKDVFVHFSAIQNGGFKTLEEGQKVEFTIENGQKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAL 70
>gi|154502556|ref|ZP_02039616.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC
29149]
gi|153796748|gb|EDN79168.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC
29149]
Length = 65
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI S G+DVF+H S + G +L EGQ V ++ +
Sbjct: 2 TGTVKWFNNQKGYGFI----SDSEGNDVFVHYSGLVMDGFKSLEEGQAVEFEVTEGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVVKL 65
>gi|149927840|ref|ZP_01916091.1| cold-shock DNA-binding domain family protein [Limnobacter sp.
MED105]
gi|149823462|gb|EDM82693.1| cold-shock DNA-binding domain family protein [Limnobacter sp.
MED105]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GFI+ E G DVF+H SA+ G L EGQ V++ Q
Sbjct: 6 TGQVKFFNESKGFGFISREN----GPDVFVHFSAIQGNGFKTLAEGQKVSFTVTQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENVTAL 69
>gi|118581708|ref|YP_902958.1| cold-shock DNA-binding domain-containing protein [Pelobacter
propionicus DSM 2379]
gi|118504418|gb|ABL00901.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
2379]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF+H SA++ G +L EG VT++ V+
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAISGEGFKSLAEGDSVTFELVKGPK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--LQAANVTKI 66
>gi|157962306|ref|YP_001502340.1| cold-shock DNA-binding domain-containing protein [Shewanella
pealeana ATCC 700345]
gi|167623727|ref|YP_001674021.1| cold-shock DNA-binding domain-containing protein [Shewanella
halifaxensis HAW-EB4]
gi|170726405|ref|YP_001760431.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|212635812|ref|YP_002312337.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
gi|157847306|gb|ABV87805.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
700345]
gi|167353749|gb|ABZ76362.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
HAW-EB4]
gi|169811752|gb|ACA86336.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
gi|212557296|gb|ACJ29750.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
Length = 68
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +V
Sbjct: 60 -PQAENVTVV 68
>gi|228919954|ref|ZP_04083308.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228938352|ref|ZP_04100963.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228971230|ref|ZP_04131859.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977839|ref|ZP_04138221.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|228781857|gb|EEM30053.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
gi|228788465|gb|EEM36415.1| Cold shock protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821298|gb|EEM67312.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228839667|gb|EEM84954.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|326938860|gb|AEA14756.1| cold shock protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI G+DVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGGNDVFVHFSAIETDGFKSLEEGQKVSFEIEDGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|251789584|ref|YP_003004305.1| cold shock-like protein CspC [Dickeya zeae Ech1591]
gi|271500505|ref|YP_003333530.1| cold-shock DNA-binding domain-containing protein [Dickeya
dadantii Ech586]
gi|307131152|ref|YP_003883168.1| stress protein, member of the CspA-family [Dickeya dadantii 3937]
gi|247538205|gb|ACT06826.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
gi|270344060|gb|ACZ76825.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
gi|306528681|gb|ADM98611.1| stress protein, member of the CspA-family [Dickeya dadantii 3937]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVVAL 69
>gi|91200067|emb|CAJ73110.1| strongly similar to cold shock protein A [Candidatus Kuenenia
stuttgartiensis]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI+ + G+DVF+H++A+ G L EG V ++ V++
Sbjct: 1 MPQGTVKWFNDSKGFGFISQDN----GEDVFVHQTAIECEGFRTLAEGDKVEFEVVKDQK 56
Query: 62 NGKYSAENLKLV 73
Y A + +
Sbjct: 57 G--YKATKVVKL 66
>gi|91793637|ref|YP_563288.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
gi|91715639|gb|ABE55565.1| cold-shock DNA-binding protein family [Shewanella denitrificans
OS217]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q
Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +V
Sbjct: 60 -PQAENVSVV 68
>gi|261345563|ref|ZP_05973207.1| conserved domain protein [Providencia rustigianii DSM 4541]
gi|282566611|gb|EFB72146.1| conserved domain protein [Providencia rustigianii DSM 4541]
Length = 70
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP DVF+H SA+ S L EGQ V++ ++ A G
Sbjct: 6 TGLVKWFNDDKGFGFITPAD---GSKDVFVHFSAIQSDDFKTLHEGQKVSFSV-ESGAKG 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVVAL 70
>gi|153011838|ref|YP_001373051.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151563726|gb|ABS17222.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 68
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFITPE G DVF+H S +A AG+ +L EGQ V+Y+ Q+
Sbjct: 1 MATGTVKFFNQDKGFGFITPES---GGSDVFVHVSGLAQAGV-SLGEGQKVSYEIGQDRK 56
Query: 62 NGKYSAENLKLV 73
GK AEN++ +
Sbjct: 57 TGKAKAENVRPI 68
>gi|119503460|ref|ZP_01625543.1| Cold shock protein [marine gamma proteobacterium HTCC2080]
gi|119460522|gb|EAW41614.1| Cold shock protein [marine gamma proteobacterium HTCC2080]
Length = 68
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI E G DVF+H SA+ G LT+GQ V +
Sbjct: 5 TGTVKWFNETKGYGFIEQE----GGPDVFVHFSAIQGDGFKTLTDGQKVQFTVATGQKG- 59
Query: 64 KYSAENL 70
AEN+
Sbjct: 60 -PQAENV 65
>gi|90413211|ref|ZP_01221206.1| putative cold shock-like protein CspD [Photobacterium profundum
3TCK]
gi|90325763|gb|EAS42221.1| putative cold shock-like protein CspD [Photobacterium profundum
3TCK]
Length = 73
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE D+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEEGEG---DIFAHYSTIQMDGYRTLKAGQQVNYEIQTGPK 57
Query: 62 NGKYSAENLKLVPKSSN 78
S +++P
Sbjct: 58 GHHAS----EIIPVEGE 70
>gi|325121558|gb|ADY81081.1| probable cold-shock protein [Acinetobacter calcoaceticus PHEA-2]
Length = 71
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + G D+F H + + + G L EGQ V + VQ
Sbjct: 5 TGTVKWFNETKGFGFIAAD----EGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG- 59
Query: 64 KYSAENLKLVPKS 76
A N+ ++ S
Sbjct: 60 -PQASNIVILQNS 71
>gi|269836302|ref|YP_003318530.1| cold-shock DNA-binding domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269785565|gb|ACZ37708.1| cold-shock DNA-binding domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 77
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWY+P+KGYGFI + D+F+HRSA++ + L EG V +D +
Sbjct: 1 MTTGTVKWYDPEKGYGFIARDD---GDSDLFVHRSAISGS---ELNEGDRVEFDVTSSPK 54
Query: 62 NGKYSAENLKLVPK 75
+ AE++++
Sbjct: 55 GPR--AEHVRVTEP 66
>gi|239628310|ref|ZP_04671341.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239518456|gb|EEQ58322.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFIT + E+G+D+F+H S +AS G +L +GQ VT+D +
Sbjct: 1 MNKGTVKWFNSQKGFGFIT---NEENGEDIFVHFSGIASNGFKSLEDGQSVTFDITNGNR 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LQAVNV 64
>gi|325273425|ref|ZP_08139677.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324101438|gb|EGB99032.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 86
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGF+ EG DD+F H SA+ G L GQ VT+D +Q
Sbjct: 1 MASGKVKWFNNAKGYGFVNEEG---KNDDLFAHYSAIQMDGYKTLKAGQAVTFDVIQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LHAVNI 64
>gi|225871753|ref|YP_002753207.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
gi|225793287|gb|ACO33377.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ +G+DVF+H SA+ S G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFLSR----PNGEDVFVHFSAITSNGFRSLQEGQAVQFNVVKGAK 56
Query: 62 NGKYSAENLKLV 73
+ AEN++ +
Sbjct: 57 G--WQAENVQAL 66
>gi|206579703|ref|YP_002239721.1| cold shock protein CspE [Klebsiella pneumoniae 342]
gi|288936563|ref|YP_003440622.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|206568761|gb|ACI10537.1| cold shock protein CspE [Klebsiella pneumoniae 342]
gi|288891272|gb|ADC59590.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVMAI 69
>gi|15602520|ref|NP_245592.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720931|gb|AAK02739.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP G D+F+H S + + L EG V Y +
Sbjct: 5 NGTVKWFNSDKGFGFITPAD---GGKDLFVHFSGIIGSNYRTLNEGDRVEYSVQDSQRG- 60
Query: 64 KYSAENLKLV 73
SA ++K +
Sbjct: 61 -PSAIDVKAI 69
>gi|284103679|ref|ZP_06386113.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3]
gi|283830241|gb|EFC34486.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3]
Length = 76
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI E DVF+H SA+ G L EG+ V +D V+
Sbjct: 7 GTVKWFNDRKGFGFIRVE----GEQDVFVHYSALQGEGFKTLKEGEPVEFDLVEGAKG-- 60
Query: 65 YSAENLKLVPKS 76
A N+ +
Sbjct: 61 PQAANVVKTAAA 72
>gi|224063128|ref|XP_002301004.1| predicted protein [Populus trichocarpa]
gi|222842730|gb|EEE80277.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFI P+ G+D+F+H++++ S G L++GQ V + +
Sbjct: 8 TGTVKWFSAQKGFGFIAPDD---GGEDLFVHQTSIQSDGFRTLSDGQPVEFSVGSGEDGR 64
Query: 64 KYSAENL 70
+A+ +
Sbjct: 65 AKAADVV 71
>gi|148559223|ref|YP_001258444.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|148370480|gb|ABQ60459.1| cold-shock family protein [Brucella ovis ATCC 25840]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+G I P+ DVF+H SAV AGL +L EGQ V Y+ V +
Sbjct: 1 MANGTVKFFNSTKGFGSIQPDD---GSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRR 57
Query: 62 NGKYSAENLK 71
+GK +A NL+
Sbjct: 58 SGKSAAANLE 67
>gi|312877876|ref|ZP_07737822.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|311795339|gb|EFR11722.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
lactoaceticus 6A]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+NP+KGYGFI+ + G+DVF+H SA+ G L EGQ+V +D V+ +
Sbjct: 2 RGRVKWFNPEKGYGFISADN----GEDVFVHFSAINMEGYKTLAEGQMVEFDIVKTERGN 57
Query: 64 KYSAENLKLVP 74
A N++ V
Sbjct: 58 --QAMNVRKVK 66
>gi|295397227|ref|ZP_06807326.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
gi|294974536|gb|EFG50264.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
Length = 66
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI DDVF+H +A+ G +L EGQ V+++ ++
Sbjct: 1 MEQGKVKWFNAEKGFGFIER----SGADDVFVHFTAIQGDGFKSLEEGQEVSFEI-EDGN 55
Query: 62 NGKYSAENLK 71
G +A +K
Sbjct: 56 RGPQAANVVK 65
>gi|225387921|ref|ZP_03757685.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
DSM 15981]
gi|225045964|gb|EEG56210.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
DSM 15981]
Length = 86
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KG+GFIT ++E+G+D+F+H S +AS G +L +GQ VT+D +
Sbjct: 20 MNKGTVKWFNSQKGFGFIT---NSENGEDIFVHYSGIASNGFKSLEDGQSVTFDITNGNR 76
Query: 62 NGKYSAENL 70
A N+
Sbjct: 77 G--LQAVNV 83
>gi|302535426|ref|ZP_07287768.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302444321|gb|EFL16137.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 67
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G GDDVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MASGTVKWFNAAKGFGFIEQDG---GGDDVFAHFSNIATQGFRELLEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENLKLV 73
+AEN+ V
Sbjct: 58 G--PTAENIVPV 67
>gi|119944526|ref|YP_942206.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119863130|gb|ABM02607.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 68
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H SA++S G LTEGQ V + Q
Sbjct: 4 TTGTVKWFNESKGFGFIEQE----SGPDVFAHFSAISSTGFKTLTEGQKVQFTVTQGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENIVAL 68
>gi|320160229|ref|YP_004173453.1| cold shock protein [Anaerolinea thermophila UNI-1]
gi|319994082|dbj|BAJ62853.1| cold shock protein [Anaerolinea thermophila UNI-1]
Length = 69
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI+ E G DVF+H SA+ G +L EGQ V + +
Sbjct: 7 GTVKWFNSEKGYGFISREN----GPDVFVHYSAIEGNGYRSLNEGQTVEFKVEKGPKG-- 60
Query: 65 YSAENLKL 72
A + +
Sbjct: 61 LQASQVTV 68
>gi|313498101|gb|ADR59467.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas
putida BIRD-1]
Length = 88
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG + DD+F H SA+ G L GQ V +D VQ
Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIRMDGYKTLKAGQAVIFDIVQGPK 57
Query: 62 NGKYSAENLK 71
A +K
Sbjct: 58 G--LHAVEIK 65
>gi|229096187|ref|ZP_04227160.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29]
gi|229115142|ref|ZP_04244552.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3]
gi|228668282|gb|EEL23714.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3]
gi|228687147|gb|EEL41052.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29]
Length = 65
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI + DDVF+H SA+ G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEMD----GADDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|239827200|ref|YP_002949824.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
gi|239807493|gb|ACS24558.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
Length = 66
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +KW+N +KGYGFI + G+DVF+H +A+ G L EGQ V +D + +
Sbjct: 1 MNKGKVKWFNAEKGYGFIEMD----GGNDVFVHFTAIQGEGFKTLEEGQTVMFDIIDGNR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|78485401|ref|YP_391326.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira
crunogena XCL-2]
gi|78363687|gb|ABB41652.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena
XCL-2]
Length = 68
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H SA+ S+G L EGQ V +
Sbjct: 4 TTGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSSGFKTLAEGQKVEFTVTDGPKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENIVAL 68
>gi|15800910|ref|NP_286926.1| cold shock protein CspG [Escherichia coli O157:H7 EDL933]
gi|25296143|pir||E85634 homolog of Salmonella cold shock protein [imported] - Escherichia
coli (strain O157:H7, substrain EDL933)
gi|12514257|gb|AAG55537.1|AE005293_1 homolog of Salmonella cold shock protein [Escherichia coli
O157:H7 str. EDL933]
Length = 70
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H +A+ S L E Q V + Q
Sbjct: 6 TGLVKWFNADKGFGFITPDD---GSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|229029377|ref|ZP_04185462.1| Cold shock-like protein cspB [Bacillus cereus AH1271]
gi|228731937|gb|EEL82834.1| Cold shock-like protein cspB [Bacillus cereus AH1271]
Length = 77
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 14 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 68
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 69 -PQAANVVKL 77
>gi|149187680|ref|ZP_01865977.1| cold shock protein [Vibrio shilonii AK1]
gi|148838560|gb|EDL55500.1| cold shock protein [Vibrio shilonii AK1]
Length = 69
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H S + + G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSNIKADGFRTLAEGQKVAFKVTQGQKG- 60
Query: 64 KYSAENLKLV 73
AE + LV
Sbjct: 61 -PQAEEITLV 69
>gi|118602909|ref|YP_904124.1| cold-shock DNA-binding protein family protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567848|gb|ABL02653.1| cold-shock DNA-binding protein family [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 67
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW++ KG+GFI E GDDVF+H A+ G +L EGQ V +D Q +
Sbjct: 1 MSTTGKVKWFDAKKGFGFIEQEN----GDDVFVHFRAIQGDGYKSLEEGQEVEFDLEQGE 56
Query: 61 ANGK 64
+
Sbjct: 57 KGPQ 60
>gi|114768941|ref|ZP_01446567.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
HTCC2255]
gi|114549858|gb|EAU52739.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
HTCC2255]
Length = 68
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P G DVF+H +AV +AGL L + Q V+Y+ + +
Sbjct: 1 MPNGTVKWFNGTKGYGFIAPAD---GGADVFVHITAVQAAGLQGLEDDQKVSYELEEGN- 56
Query: 62 NGKYSAENLKL 72
NGK +A N+ L
Sbjct: 57 NGKQNATNIAL 67
>gi|22124143|ref|NP_667566.1| cold shock-like protein [Yersinia pestis KIM 10]
gi|108809648|ref|YP_653564.1| major cold shock protein Cspa1 [Yersinia pestis Antiqua]
gi|108813686|ref|YP_649453.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
gi|21956898|gb|AAM83817.1|AE013622_6 cold shock-like protein [Yersinia pestis KIM 10]
gi|108777334|gb|ABG19853.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108781561|gb|ABG15619.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
Length = 102
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 38 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 93
Query: 64 KYSAENL 70
SA N+
Sbjct: 94 -PSAVNV 99
>gi|91775541|ref|YP_545297.1| cold-shock DNA-binding protein family protein [Methylobacillus
flagellatus KT]
gi|91709528|gb|ABE49456.1| cold-shock DNA-binding protein family [Methylobacillus
flagellatus KT]
Length = 68
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G +KW+N KG+GFITP+ E G D+F H SA+ + G +L E Q V++D
Sbjct: 1 MATGIVKWFNDSKGFGFITPD---EGGSDLFAHFSAIVNEGGYKSLAENQRVSFDVTDGP 57
Query: 61 ANGKYSAENLKL 72
A N+K
Sbjct: 58 KGK--QASNIKP 67
>gi|242238529|ref|YP_002986710.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
gi|242130586|gb|ACS84888.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
Length = 69
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIQSTGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|146295937|ref|YP_001179708.1| cold-shock DNA-binding domain-containing protein
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145409513|gb|ABP66517.1| cold-shock DNA-binding protein family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 66
Score = 84.3 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+NP+KGYGFI+ E GDDVF+H SA+ G L EGQ+V +D V+++
Sbjct: 2 RGRVKWFNPEKGYGFISTEN----GDDVFVHFSAINMEGYKTLAEGQMVEFDVVKSERGN 57
Query: 64 KYSAENLKLVP 74
A N++ V
Sbjct: 58 --QAVNVRKVK 66
>gi|330446455|ref|ZP_08310107.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490646|dbj|GAA04604.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 73
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI PE D+F H S + G L GQ V Y+
Sbjct: 1 MATGTVKWFNNAKGFGFICPEDGEG---DIFAHYSTIQMEGYRTLKAGQQVNYEVQAGPK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|320105861|ref|YP_004181451.1| cold-shock DNA-binding domain-containing protein [Terriglobus
saanensis SP1PR4]
gi|319924382|gb|ADV81457.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
SP1PR4]
Length = 66
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ G+DVF+H SA+ S+G +L EGQ V ++ V+
Sbjct: 1 MEQGTVKWFNDAKGFGFVSRAN----GEDVFVHYSAITSSGFKSLQEGQAVQFNVVKGPK 56
Query: 62 NGKYSAENLKLV 73
+ A +++ +
Sbjct: 57 G--WQASDVQPL 66
>gi|296532321|ref|ZP_06895059.1| CspA family cold shock transcriptional regulator [Roseomonas
cervicalis ATCC 49957]
gi|296267345|gb|EFH13232.1| CspA family cold shock transcriptional regulator [Roseomonas
cervicalis ATCC 49957]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H +AV AGL L E Q ++YD V
Sbjct: 1 MAIGTVKWFNATKGFGFIVPQD---GGKDVFVHITAVQKAGLQGLNENQKISYDVVME-- 55
Query: 62 NGKYSAENLKLV 73
GK +A NLK +
Sbjct: 56 RGKAAATNLKPL 67
>gi|225022302|ref|ZP_03711494.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
ATCC 33806]
gi|224944899|gb|EEG26108.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
ATCC 33806]
Length = 73
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFI PE DVF+H S + G L E Q+V ++
Sbjct: 6 MAKGAVKWFNAEKGFGFIEPED---GSADVFVHYSEINGDGFRYLEENQVVEFEVGDGAK 62
Query: 62 NGKYSAENLKLV 73
A N++++
Sbjct: 63 G--TQALNVRVI 72
>gi|116515229|ref|YP_802858.1| cold shock protein CspE [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116257083|gb|ABJ90765.1| RNA chaperone, transcription antiterminator [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++ +
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|310780205|ref|YP_003968537.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
gi|309749528|gb|ADO84189.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
Length = 66
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFIT E G DVF+H S + G L EG+ VT++ Q
Sbjct: 1 MVNGTVKWFNQEKGFGFITSED----GTDVFVHFSQINKPGFKTLEEGEQVTFEITQGQK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--PQASNVT 64
>gi|33519902|ref|NP_878734.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus]
gi|33504247|emb|CAD83510.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L+EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLSEGQNVEFEVQDGHKG- 60
Query: 64 KYSAENLK 71
SA N+
Sbjct: 61 -PSAVNVT 67
>gi|312880812|ref|ZP_07740612.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
12260]
gi|310784103|gb|EFQ24501.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
12260]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N KGYGFIT + G DVF H SA+ G L EG V+ D
Sbjct: 1 MATQGTVKWFNATKGYGFITTD----EGRDVFCHFSAIKMDGYKALDEGVRVSLDVEMGP 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--EQAANVVKL 67
>gi|260549563|ref|ZP_05823781.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
gi|260407356|gb|EEX00831.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
Length = 70
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + SG DVF H +AS+G L EGQ VT++ VQ
Sbjct: 6 ATGTVKWFNETKGFGFIQQD----SGPDVFAHFKEIASSGFKTLHEGQRVTFNVVQGQKG 61
Query: 63 GKYSAENL 70
SA N+
Sbjct: 62 --PSATNI 67
>gi|257887492|ref|ZP_05667145.1| cold-shock domain-contain protein [Enterococcus faecium
1,141,733]
gi|257895987|ref|ZP_05675640.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
gi|293377445|ref|ZP_06623647.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
gi|257823546|gb|EEV50478.1| cold-shock domain-contain protein [Enterococcus faecium
1,141,733]
gi|257832552|gb|EEV58973.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
gi|292643963|gb|EFF62071.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
Length = 76
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KGYGFI+ + + +++F+H +A+ G L E Q+V ++ ++ +
Sbjct: 1 MTTGIVKWFDNKKGYGFISYDDT----EEIFVHFTAIEEEGFKTLEENQVVEFEIIEGNR 56
Query: 62 NGKYSAENLKL 72
A ++K
Sbjct: 57 G--TQAAHVKK 65
>gi|89093876|ref|ZP_01166821.1| cold-shock domain family protein [Oceanospirillum sp. MED92]
gi|89081762|gb|EAR60989.1| cold-shock domain family protein [Oceanospirillum sp. MED92]
Length = 149
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N KG+GFIT DDVF+H + G +L EGQ V + ++D
Sbjct: 82 REQGTVKWFNVSKGFGFITR----GEDDDVFVHFRNIRGRGHRSLAEGQKVRFYVRESDK 137
Query: 62 NGKYSAENLKLV 73
AE++ +V
Sbjct: 138 G--LQAEDVSVV 147
>gi|90023468|ref|YP_529295.1| cold-shock DNA-binding protein family protein [Saccharophagus
degradans 2-40]
gi|89953068|gb|ABD83083.1| cold-shock DNA-binding protein family [Saccharophagus degradans
2-40]
Length = 86
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKG+GFITP G D+F+H S + G L +GQ V ++ Q
Sbjct: 19 MSKGTVKWFNADKGFGFITPAD---GGKDLFVHHSEIQAGGGYATLNDGQEVEFEVGQGQ 75
Query: 61 ANGKYSAENLKLV 73
A ++ +
Sbjct: 76 KG--PCANKVQPL 86
>gi|319891930|ref|YP_004148805.1| Cold shock protein CspC [Staphylococcus pseudintermedius
HKU10-03]
gi|317161626|gb|ADV05169.1| Cold shock protein CspC [Staphylococcus pseudintermedius
HKU10-03]
gi|323464979|gb|ADX77132.1| cold shock protein B [Staphylococcus pseudintermedius ED99]
Length = 66
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+ +
Sbjct: 1 MNNGTVKWFNAEKGFGFIEREN----GDDVFVHFSAIVGDGYKSLEEGQNVDFDIVEGER 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--AQAANV 63
>gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata]
gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata]
Length = 257
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + W+N KGYGFITP+ + +++F+H+S++ S G +L EG V + Q +G
Sbjct: 12 TGKVNWFNDSKGYGFITPDDRS---EELFVHQSSIVSEGYRSLAEGDSVEFAITQGS-DG 67
Query: 64 KYSAENLKLVPKSS 77
K A + + +
Sbjct: 68 KTKAVEVTALGGGA 81
>gi|118497319|ref|YP_898369.1| cold shock protein [Francisella tularensis subsp. novicida U112]
gi|167627835|ref|YP_001678335.1| cold-shock DNA-binding domain-containing protein [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|195536005|ref|ZP_03079012.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
subsp. novicida FTE]
gi|208779106|ref|ZP_03246452.1| cold-shock' DNA-binding domain protein, putative [Francisella
novicida FTG]
gi|241668393|ref|ZP_04755971.1| cold-shock DNA-binding domain-containing protein [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254372686|ref|ZP_04988175.1| hypothetical protein FTCG_00251 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374143|ref|ZP_04989625.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548]
gi|254876926|ref|ZP_05249636.1| cold shock protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|118423225|gb|ABK89615.1| cold shock protein, DNA-binding [Francisella novicida U112]
gi|151570413|gb|EDN36067.1| hypothetical protein FTCG_00251 [Francisella novicida GA99-3549]
gi|151571863|gb|EDN37517.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548]
gi|167597836|gb|ABZ87834.1| putative cold-shock DNA-binding domain protein [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|194372482|gb|EDX27193.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
subsp. novicida FTE]
gi|208744906|gb|EDZ91204.1| cold-shock' DNA-binding domain protein, putative [Francisella
novicida FTG]
gi|254842947|gb|EET21361.1| cold shock protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|328676804|gb|AEB27674.1| Cold shock protein CspC [Francisella cf. novicida Fx1]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI P+ G DVF+H SAV +AGL +L EG+ ++++ +N
Sbjct: 1 MRQGTVKFFNTSKGFGFIEPQD---GGKDVFVHISAVENAGLSSLREGEKISFEVEEN-- 55
Query: 62 NGKYSAENLKLV 73
GK +A N+K +
Sbjct: 56 RGKMAAVNIKSI 67
>gi|229084702|ref|ZP_04216967.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44]
gi|228698586|gb|EEL51306.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D V+ +
Sbjct: 2 QGKVKWFNNEKGFGFIEIE----GADDVFVHFSAIQGDGYKALEEGQEVSFDIVEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|91226280|ref|ZP_01261120.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|91189291|gb|EAS75570.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
Length = 70
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V++ Q +
Sbjct: 6 TGSVKWFNESKGFGFITPDN---GGSDLFVHFKSIVSEGFKTLSEGQKVSFVVEQGNKG- 61
Query: 64 KYSAENLKLV 73
A+N+ LV
Sbjct: 62 -PQADNVTLV 70
>gi|90023198|ref|YP_529025.1| cold-shock DNA-binding protein family protein [Saccharophagus
degradans 2-40]
gi|89952798|gb|ABD82813.1| cold-shock DNA-binding protein family [Saccharophagus degradans
2-40]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI +SG DVF H SA+AS+G L EGQ V + Q
Sbjct: 6 TGTVKWFNESKGFGFIE----QKSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENIVAL 69
>gi|42780307|ref|NP_977554.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
gi|228906859|ref|ZP_04070728.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|228957503|ref|ZP_04119255.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228984303|ref|ZP_04144484.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229042975|ref|ZP_04190706.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|229084220|ref|ZP_04216504.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
gi|229095719|ref|ZP_04226698.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|229101818|ref|ZP_04232533.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|229114669|ref|ZP_04244083.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|229143839|ref|ZP_04272258.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|229149436|ref|ZP_04277672.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|229160184|ref|ZP_04288183.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|229195434|ref|ZP_04322202.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|296501833|ref|YP_003663533.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|42736226|gb|AAS40162.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
gi|209972092|gb|ACJ03557.1| cold shock protein [Bacillus cereus]
gi|209972100|gb|ACJ03561.1| cold shock protein [Bacillus thuringiensis serovar tohokuensis]
gi|228587974|gb|EEK46024.1| Cold shock protein cspB [Bacillus cereus m1293]
gi|228623145|gb|EEK79972.1| Cold shock protein cspB [Bacillus cereus R309803]
gi|228634078|gb|EEK90671.1| Cold shock protein cspB [Bacillus cereus m1550]
gi|228639600|gb|EEK96011.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
gi|228668734|gb|EEL24162.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
gi|228681611|gb|EEL35773.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
gi|228687552|gb|EEL41451.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
gi|228699098|gb|EEL51799.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
gi|228726315|gb|EEL77541.1| Cold shock protein cspB [Bacillus cereus AH676]
gi|228775420|gb|EEM23805.1| Cold shock protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228802095|gb|EEM48960.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228852863|gb|EEM97648.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
gi|296322885|gb|ADH05813.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|324325246|gb|ADY20506.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ + +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|300855138|ref|YP_003780122.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
gi|300435253|gb|ADK15020.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G D+F H S + S G L EGQ V+YD Q
Sbjct: 2 NGTVKWFNGEKGFGFITGED----GKDIFAHFSQINSDGYKTLEEGQKVSYDEGQGQKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITVL 65
>gi|225175289|ref|ZP_03729284.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225169041|gb|EEG77840.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KGYGFI E G DVF+H SA+ G +L EG+ V ++ V+
Sbjct: 3 GKVKWFNQEKGYGFIERED----GGDVFVHYSAIQQEGFKSLAEGEEVEFEIVEGTRG-- 56
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 57 PQAANVVKL 65
>gi|28871287|ref|NP_793906.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str.
DC3000]
gi|66047111|ref|YP_236952.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|70728640|ref|YP_258389.1| cold acclimation protein B-like protein [Pseudomonas fluorescens
Pf-5]
gi|71736780|ref|YP_273637.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola
1448A]
gi|77457428|ref|YP_346933.1| cold-shock DNA-binding protein family protein [Pseudomonas
fluorescens Pf0-1]
gi|213970877|ref|ZP_03399000.1| cold acclimation protein B-related protein [Pseudomonas syringae
pv. tomato T1]
gi|229588835|ref|YP_002870954.1| cold shock protein [Pseudomonas fluorescens SBW25]
gi|237798785|ref|ZP_04587246.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|257486637|ref|ZP_05640678.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289626589|ref|ZP_06459543.1| cold shock protein [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289647565|ref|ZP_06478908.1| cold shock protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|289676765|ref|ZP_06497655.1| cold shock protein [Pseudomonas syringae pv. syringae FF5]
gi|298488746|ref|ZP_07006775.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|301383772|ref|ZP_07232190.1| cold shock protein [Pseudomonas syringae pv. tomato Max13]
gi|302059920|ref|ZP_07251461.1| cold shock protein [Pseudomonas syringae pv. tomato K40]
gi|302184709|ref|ZP_07261382.1| cold shock protein [Pseudomonas syringae pv. syringae 642]
gi|312959425|ref|ZP_07773942.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
gi|330807866|ref|YP_004352328.1| transcription factor, Csd family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|60391849|sp|P0A105|CAPB_PSESM RecName: Full=Cold shock protein CapB; AltName: Full=Cold
acclimation protein B
gi|60391850|sp|P0A106|CAPB_PSEFR RecName: Full=Cold shock protein CapB; AltName: Full=C8.0;
AltName: Full=Cold acclimation protein B
gi|1513081|gb|AAC45997.1| cold acclimation protein B [Pseudomonas fragi]
gi|28854537|gb|AAO57601.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str.
DC3000]
gi|63257818|gb|AAY38914.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|68342939|gb|AAY90545.1| cold acclimation protein B-related protein [Pseudomonas
fluorescens Pf-5]
gi|71557333|gb|AAZ36544.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola
1448A]
gi|77381431|gb|ABA72944.1| cold shock protein [Pseudomonas fluorescens Pf0-1]
gi|213924400|gb|EEB57972.1| cold acclimation protein B-related protein [Pseudomonas syringae
pv. tomato T1]
gi|229360701|emb|CAY47559.1| cold shock protein [Pseudomonas fluorescens SBW25]
gi|298156819|gb|EFH97910.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|311286142|gb|EFQ64706.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
gi|320325639|gb|EFW81701.1| cold shock protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320327078|gb|EFW83092.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
4]
gi|327375974|gb|AEA67324.1| putative Transcription factor, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|330889578|gb|EGH22239.1| cold shock protein [Pseudomonas syringae pv. mori str. 301020]
gi|330898586|gb|EGH30005.1| cold shock protein [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330949989|gb|EGH50249.1| cold shock protein [Pseudomonas syringae Cit 7]
gi|330973105|gb|EGH73171.1| cold shock protein [Pseudomonas syringae pv. aceris str.
M302273PT]
gi|331015681|gb|EGH95737.1| cold shock protein [Pseudomonas syringae pv. lachrymans str.
M302278PT]
gi|331021638|gb|EGI01695.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 60 G--MQAEEVQVI 69
>gi|294497748|ref|YP_003561448.1| cold shock protein [Bacillus megaterium QM B1551]
gi|295703123|ref|YP_003596198.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294347685|gb|ADE68014.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294800782|gb|ADF37848.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KG+GFI E DDVF+H SA+ G +L EGQ VT++
Sbjct: 1 MVQGKVKWFNAEKGFGFIEVE----GQDDVFVHFSAIQGEGFKSLEEGQEVTFEIEDGAR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|254386942|ref|ZP_05002225.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
gi|194345770|gb|EDX26736.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|163785451|ref|ZP_02180055.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159879277|gb|EDP73177.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 76
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFIT + + D+F+H SA+ G NL EG+ V ++ VQ +
Sbjct: 12 TGTVKWFNSKKGFGFITRDD---NQGDIFVHYSAIEGEGFKNLEEGEKVEFEVVQEEKGP 68
Query: 64 KYS 66
+
Sbjct: 69 RAQ 71
>gi|146337756|ref|YP_001202804.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
gi|146190562|emb|CAL74564.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
Length = 68
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI P+ G+DVF+H SAV AGL L EGQ + YD + G
Sbjct: 2 QGTVKWFNGQKGFGFIQPQD---GGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRG 58
Query: 64 KYSAENLKLV 73
K SAENL L+
Sbjct: 59 KTSAENLSLI 68
>gi|148547058|ref|YP_001267160.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida F1]
gi|148511116|gb|ABQ77976.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
Length = 88
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG + DD+F H SA+ G L GQ V +D VQ
Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIRMDGYKTLKAGQAVVFDIVQGPK 57
Query: 62 NGKYSAENLK 71
A +K
Sbjct: 58 G--LHAVEIK 65
>gi|153954443|ref|YP_001395208.1| hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555]
gi|219855034|ref|YP_002472156.1| hypothetical protein CKR_1691 [Clostridium kluyveri NBRC 12016]
gi|146347324|gb|EDK33860.1| Hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555]
gi|219568758|dbj|BAH06742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+DVF H S + S G L EGQ V++D +
Sbjct: 2 TGTVKWFNENKGFGFITGED----GNDVFAHFSQINSEGYKTLEEGQKVSFDKTRGQKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENITVL 65
>gi|315649820|ref|ZP_07902903.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
gi|315274794|gb|EFU38175.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ S G L EGQ V ++ V+
Sbjct: 2 QGKVKWFNAEKGYGFIETED----GGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEGARG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVIKI 65
>gi|223043029|ref|ZP_03613077.1| conserved domain protein [Staphylococcus capitis SK14]
gi|314933099|ref|ZP_07840464.1| conserved domain protein [Staphylococcus caprae C87]
gi|222443883|gb|EEE49980.1| conserved domain protein [Staphylococcus capitis SK14]
gi|313653249|gb|EFS17006.1| conserved domain protein [Staphylococcus caprae C87]
Length = 66
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V +D V+ +
Sbjct: 1 MNNGTVKWFNSEKGFGFIEREN----GGDVFVHFSAIVEDGYKSLEEGQNVEFDIVEGER 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--EQAANV 63
>gi|123443227|ref|YP_001007201.1| cold shock protein CspE [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238752587|ref|ZP_04614060.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
gi|332160847|ref|YP_004297424.1| cold shock protein CspE [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122090188|emb|CAL13051.1| cold shock-like protein cspE1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238709178|gb|EEQ01423.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
gi|318604749|emb|CBY26247.1| cold shock protein CspE [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665077|gb|ADZ41721.1| cold shock protein CspE [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330863376|emb|CBX73498.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++
Sbjct: 5 KGSVKWFNEAKGFGFITPED---GSKDVFVHFSAIASNGFKTLAEGQRVEFEITSGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|315605470|ref|ZP_07880508.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312816|gb|EFU60895.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
+ G++KW+N KG+GFITP+ + DVF+H S + +G L EG+ V Y+ ++
Sbjct: 1 MTTGTVKWFNDAKGFGFITPDDRSV---DVFVHYSNIVGQSGRRTLMEGERVEYEAIEGP 57
Query: 61 ANGKYSAENL 70
A ++
Sbjct: 58 KG--PQATDV 65
>gi|302760539|ref|XP_002963692.1| hypothetical protein SELMODRAFT_451445 [Selaginella
moellendorffii]
gi|300168960|gb|EFJ35563.1| hypothetical protein SELMODRAFT_451445 [Selaginella
moellendorffii]
Length = 184
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P +G+GFITP+ D+F+H++++ + G +L EG++V Y V+ +G+
Sbjct: 17 GKVKWFSPTRGFGFITPDD---GSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 72
Query: 65 YSAENLK 71
A N+
Sbjct: 73 MRAGNVT 79
>gi|258516119|ref|YP_003192341.1| cold-shock DNA-binding domain-containing protein
[Desulfotomaculum acetoxidans DSM 771]
gi|257779824|gb|ACV63718.1| cold-shock DNA-binding domain protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFI E G D+F+H SA+ G L EGQ V ++ V+ +
Sbjct: 3 GTVKWFNAEKGFGFIEQE----GGGDIFVHFSAIQGDGFKTLDEGQKVKFEVVEGNRG-- 56
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 57 PQAANVSRI 65
>gi|197284318|ref|YP_002150190.1| cold shock protein CspE [Proteus mirabilis HI4320]
gi|227358541|ref|ZP_03842866.1| cold shock protein [Proteus mirabilis ATCC 29906]
gi|194681805|emb|CAR41046.1| putative cold shock protein [Proteus mirabilis HI4320]
gi|227161252|gb|EEI46326.1| cold shock protein [Proteus mirabilis ATCC 29906]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++
Sbjct: 5 KGNVKWFNETKGFGFITPED---GSKDVFVHFSAIVSEGFKTLAEGQKVEFEVTDGAKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAANVVAI 69
>gi|77919964|ref|YP_357779.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
gi|77546047|gb|ABA89609.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
DSM 2380]
Length = 66
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + G DVF+H S + + G +LT+GQ V +D +++
Sbjct: 1 MAEGVVKWFNDAKGFGFIE----QQDGPDVFVHFSVIQAEGFKSLTQGQQVEFDIIESQK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQANNV 63
>gi|84387543|ref|ZP_00990561.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
gi|86144453|ref|ZP_01062785.1| putative Cold shock-like protein [Vibrio sp. MED222]
gi|84377591|gb|EAP94456.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
gi|85837352|gb|EAQ55464.1| putative Cold shock-like protein [Vibrio sp. MED222]
Length = 70
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V+++
Sbjct: 5 NTGTVKWFNEEKGFGFISQDN---GGADVFVHFRAIASEGFKTLKEGQKVSFEVENGQKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --LQAANV 67
>gi|32034585|ref|ZP_00134741.1| COG1278: Cold shock proteins [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126207606|ref|YP_001052831.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
L20]
gi|165975574|ref|YP_001651167.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149388|ref|YP_001967913.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303249822|ref|ZP_07336026.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303251942|ref|ZP_07338113.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307244926|ref|ZP_07527023.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247101|ref|ZP_07529153.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249322|ref|ZP_07531316.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307251645|ref|ZP_07533550.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307256143|ref|ZP_07537930.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258334|ref|ZP_07540075.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307262705|ref|ZP_07544333.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|126096398|gb|ABN73226.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875675|gb|ABY68723.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189914519|gb|ACE60771.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302649372|gb|EFL79557.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302651389|gb|EFL81541.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306854091|gb|EFM86299.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856350|gb|EFM88501.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858616|gb|EFM90678.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860842|gb|EFM92850.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306865324|gb|EFM97220.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867518|gb|EFM99365.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306871960|gb|EFN03676.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ ++
Sbjct: 4 ATGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERG 60
Query: 63 GKYSAENLKLV 73
SA N+K +
Sbjct: 61 --PSAVNVKTL 69
>gi|332524835|ref|ZP_08401026.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
gi|332108135|gb|EGJ09359.1| cold-shock DNA-binding protein family protein [Rubrivivax
benzoatilyticus JA2]
Length = 70
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI P+ G D+F H + +G L E Q V ++ Q
Sbjct: 4 QTGTVKWFNEGKGFGFIAPDD---GGKDLFAHFKEIQGSGFKTLVENQRVEFEVTQGQKG 60
Query: 63 GKYSAENLKLV 73
A ++ +
Sbjct: 61 --PQASKIRTL 69
>gi|119475680|ref|ZP_01616033.1| cold-shock DNA-binding domain protein [marine gamma
proteobacterium HTCC2143]
gi|119451883|gb|EAW33116.1| cold-shock DNA-binding domain protein [marine gamma
proteobacterium HTCC2143]
Length = 68
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF H SA+ S+G L EGQ V +
Sbjct: 5 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSSGFKTLAEGQRVEFTVTAGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 60 -PQAENIVAI 68
>gi|15839211|ref|NP_299899.1| temperature acclimation protein B [Xylella fastidiosa 9a5c]
gi|9107847|gb|AAF85419.1|AE004068_15 temperature acclimation protein B [Xylella fastidiosa 9a5c]
Length = 85
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFIT + +G D+F+H A+ G +L EGQ V++ VQ
Sbjct: 23 GTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQKG-- 76
Query: 65 YSAENLKLV 73
A+ ++++
Sbjct: 77 MQADQVQVL 85
>gi|118579190|ref|YP_900440.1| cold-shock DNA-binding domain-containing protein [Pelobacter
propionicus DSM 2379]
gi|118501900|gb|ABK98382.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
2379]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + DVF+H SA+ +G L EG+ VTY+ V+
Sbjct: 1 MATGTVKWFNESKGFGFIEQDD---GSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPK 57
Query: 62 NGKYSAENLKL 72
AE ++
Sbjct: 58 G--LQAEEVQK 66
>gi|302532074|ref|ZP_07284416.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302440969|gb|EFL12785.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELNEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|209693681|ref|YP_002261609.1| cold shock protein [Aliivibrio salmonicida LFI1238]
gi|208007632|emb|CAQ77736.1| cold shock protein [Aliivibrio salmonicida LFI1238]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 4 TTGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQKG 60
Query: 63 GKYSAENL 70
A N+
Sbjct: 61 --PQASNV 66
>gi|251796131|ref|YP_003010862.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
gi|247543757|gb|ACT00776.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
Length = 65
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KGYGFI+ E G+DVF+H S++ G L EGQ V ++ Q +
Sbjct: 2 KGTVKWFNAEKGYGFISVEN----GEDVFVHYSSIQGDGFKALEEGQSVEFEITQGNRG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -AQASNV 62
>gi|294633722|ref|ZP_06712280.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292830364|gb|EFF88715.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MATGTVKWFNAEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELLEGQKVNFDVAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|310778654|ref|YP_003966987.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
gi|309747977|gb|ADO82639.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
2926]
Length = 66
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E G DVF H S + G L EG+ VT++ Q
Sbjct: 1 MVKGTVKWFNGEKGFGFITSE----EGTDVFAHFSEIQKDGFKTLEEGEQVTFEITQGQK 56
Query: 62 NGKYSAENLKLV 73
A N+K V
Sbjct: 57 G--PQASNIKTV 66
>gi|148557537|ref|YP_001265119.1| cold-shock DNA-binding protein family protein [Sphingomonas
wittichii RW1]
gi|148502727|gb|ABQ70981.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
RW1]
Length = 68
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKGYGFI PE E GDD F+H SAV AG+ L + Q ++Y+ + D
Sbjct: 1 MPIGTVKFFNADKGYGFIAPE---EGGDDSFVHISAVERAGMATLNKDQRISYEV-ETDR 56
Query: 62 NGKYSAENLKLV 73
GK SA NL+ V
Sbjct: 57 RGKSSAVNLQAV 68
>gi|330983211|gb|EGH81314.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ +
Sbjct: 2 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 57
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 58 G--MQAEEVQVI 67
>gi|71725903|gb|AAZ39070.1| cold shock protein [Exiguobacterium acetylicum]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E SGDDVF+H SA+ S G +L EGQ V+++ +
Sbjct: 4 GKVKWFNSEKGFGFIERE----SGDDVFVHFSAIQSEGFKSLDEGQEVSFEVEEGQRG-- 57
Query: 65 YSAENLK 71
A N+
Sbjct: 58 PQAANVT 64
>gi|171057778|ref|YP_001790127.1| cold-shock DNA-binding domain-containing protein [Leptothrix
cholodnii SP-6]
gi|170775223|gb|ACB33362.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6]
Length = 72
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61
G +KW++ KG+GFITPE G D+F H S + G +L E Q V ++ Q
Sbjct: 6 QTGIVKWFDDGKGFGFITPED---GGKDLFAHHSEIRNGGGFRSLQENQRVEFETKQGPK 62
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 63 G--LQAANIRPL 72
>gi|126347669|emb|CAJ89383.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
Length = 67
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A +G LTEG+ VT++ Q
Sbjct: 1 MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSEIAGSGYRELTEGEHVTFEIGQGQK 57
Query: 62 NGKYSAENL 70
A+N+
Sbjct: 58 G--PQAQNI 64
>gi|254488402|ref|ZP_05101607.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
gi|214045271|gb|EEB85909.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
GAI101]
Length = 68
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ PEG DVF+H SAV AGL L++ Q +T+D ++
Sbjct: 1 MATGTVKWFNSTKGFGFVAPEG---GSKDVFVHISAVEQAGLTGLSDDQKITFDI-ESGR 56
Query: 62 NGKYSAENLKL 72
+G+ SA N+KL
Sbjct: 57 DGRESATNIKL 67
>gi|148974863|ref|ZP_01811843.1| cold shock DNA-binding domain protein [Vibrionales bacterium
SWAT-3]
gi|145965372|gb|EDK30621.1| cold shock DNA-binding domain protein [Vibrionales bacterium
SWAT-3]
Length = 69
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSAITGEGFKTLAEGQKVEFVVSQGQKG- 60
Query: 64 KYSAENLKLV 73
A+++K++
Sbjct: 61 -PQADSIKVL 69
>gi|91226269|ref|ZP_01261109.1| cold shock protein [Vibrio alginolyticus 12G01]
gi|91189280|gb|EAS75559.1| cold shock protein [Vibrio alginolyticus 12G01]
Length = 70
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
GS+KW+N +KG+GFIT + G D+F+H +++S G L EGQ V+++ +
Sbjct: 4 RETGSVKWFNENKGFGFITKDS---DGKDIFVHFRSISSDGFKTLLEGQKVSFEVEPGEK 60
Query: 62 NGKYSAENLKLV 73
A N+ L+
Sbjct: 61 G--PHATNVALI 70
>gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119958812|gb|ABM15817.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
PYR-1]
Length = 136
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGRVKWYDAEKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIDPPPS 70
>gi|45441597|ref|NP_993136.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|51596736|ref|YP_070927.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108807860|ref|YP_651776.1| cold shock protein [Yersinia pestis Antiqua]
gi|108812136|ref|YP_647903.1| cold shock protein [Yersinia pestis Nepal516]
gi|123442814|ref|YP_001008382.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145599073|ref|YP_001163149.1| cold shock protein [Yersinia pestis Pestoides F]
gi|149366382|ref|ZP_01888416.1| cold shock protein [Yersinia pestis CA88-4125]
gi|165925512|ref|ZP_02221344.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938445|ref|ZP_02227002.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|166008118|ref|ZP_02229016.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166210711|ref|ZP_02236746.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167422600|ref|ZP_02314353.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167426330|ref|ZP_02318083.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167466596|ref|ZP_02331300.1| cold shock protein [Yersinia pestis FV-1]
gi|170023981|ref|YP_001720486.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186895799|ref|YP_001872911.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|218928790|ref|YP_002346665.1| cold shock protein [Yersinia pestis CO92]
gi|229841646|ref|ZP_04461804.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843763|ref|ZP_04463906.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229894506|ref|ZP_04509688.1| cold shock protein [Yersinia pestis Pestoides A]
gi|229902455|ref|ZP_04517574.1| cold shock protein [Yersinia pestis Nepal516]
gi|257168075|ref|YP_003169743.1| cold shock protein [Yersinia pestis KIM 10]
gi|270490364|ref|ZP_06207438.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|284988615|ref|YP_003422336.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
gi|332161292|ref|YP_004297869.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|45436458|gb|AAS62013.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|51590018|emb|CAH21652.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108775784|gb|ABG18303.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108779773|gb|ABG13831.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115347401|emb|CAL20300.1| cold shock protein [Yersinia pestis CO92]
gi|122089775|emb|CAL12628.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145210769|gb|ABP40176.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149290756|gb|EDM40831.1| cold shock protein [Yersinia pestis CA88-4125]
gi|165913560|gb|EDR32180.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|165922621|gb|EDR39772.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992500|gb|EDR44801.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207891|gb|EDR52371.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958447|gb|EDR55468.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167054685|gb|EDR64489.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169750515|gb|ACA68033.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186698825|gb|ACC89454.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229680501|gb|EEO76598.1| cold shock protein [Yersinia pestis Nepal516]
gi|229689371|gb|EEO81434.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229694109|gb|EEO84157.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703525|gb|EEO90542.1| cold shock protein [Yersinia pestis Pestoides A]
gi|270338868|gb|EFA49645.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|318605204|emb|CBY26702.1| cold shock protein CspA [Yersinia enterocolitica subsp.
palearctica Y11]
gi|320014803|gb|ADV98374.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|325665522|gb|ADZ42166.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860359|emb|CBX70670.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
Length = 70
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 4 MMKGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQDQGFKTLAEGQNVQFSIENGAK 60
Query: 62 NGKYSAENLKLV 73
SA N+ +
Sbjct: 61 G--PSAANVTAI 70
>gi|331005484|ref|ZP_08328862.1| cold-shock DNA-binding domain protein [gamma proteobacterium
IMCC1989]
gi|330420676|gb|EGG94964.1| cold-shock DNA-binding domain protein [gamma proteobacterium
IMCC1989]
Length = 68
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKG+GFITPE G D+F+H S + G L +GQ V ++ Q
Sbjct: 1 MSKGTVKWFNADKGFGFITPED---GGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQGQ 57
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 58 KG--PCANNV 65
>gi|259908938|ref|YP_002649294.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
gi|224964560|emb|CAX56073.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
Length = 74
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q
Sbjct: 2 TGTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPKG 57
>gi|319760574|ref|YP_004124512.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str.
BVAF]
gi|318039288|gb|ADV33838.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str.
BVAF]
Length = 69
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L+EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPSD---GSKDVFVHFSAIQGNGFKTLSEGQNVEFEIQDGHKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAVNVTTI 69
>gi|297196882|ref|ZP_06914279.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|197711514|gb|EDY55548.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
Length = 67
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G LTEG+ VT+D Q
Sbjct: 1 MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSEIAANGYRELTEGEHVTFDIGQGQK 57
Query: 62 NGKYSAENL 70
A+N+
Sbjct: 58 G--PQAQNI 64
>gi|13625473|gb|AAK35071.1|AF363392_1 cold acclimation protein CapB [Pseudomonas sp. 30/3]
Length = 69
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIPSDGFKSLKEGQQVSFIATRGQK 59
Query: 62 NGKYSAENLKLV 73
AE ++++
Sbjct: 60 G--MQAEEVQVI 69
>gi|327481387|gb|AEA84697.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
Length = 69
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI +G DVF+H A+ G +L EGQ V + +Q
Sbjct: 4 RETGTVKWFNDAKGYGFIQR----GNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|119470168|ref|ZP_01612934.1| nucleic acid-binding domain, cold-shock RNA chaperone
[Alteromonadales bacterium TW-7]
gi|119446589|gb|EAW27863.1| nucleic acid-binding domain, cold-shock RNA chaperone
[Alteromonadales bacterium TW-7]
Length = 72
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q
Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57
Query: 62 NGKYSAENLKL 72
A+N+ L
Sbjct: 58 G--LHAKNIAL 66
>gi|2493762|sp|Q45097|CSPB_BACCE RecName: Full=Cold shock-like protein CspB
gi|1405472|emb|CAA63608.1| CspB protein [Bacillus cereus]
Length = 65
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFI EGS +DVF+H SA+ S G L EGQ V++D + +
Sbjct: 2 NGKVKWFNNEKGFGFIEMEGS----EDVFVHFSAIQSDGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVAKL 65
>gi|226330617|ref|ZP_03806135.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198]
gi|225201412|gb|EEG83766.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198]
Length = 70
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP+ DVF+H SA+ S +L EGQ V++ +N A G
Sbjct: 6 TGTVKWFNDDKGFGFITPKD---GSKDVFVHFSAIQSDSFKSLKEGQEVSFSI-ENGAKG 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVIAL 70
>gi|148244980|ref|YP_001219674.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
gi|146326807|dbj|BAF61950.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
Length = 67
Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW++ KG+GFI E SG DVF+H A+ G +L EGQ V +D +
Sbjct: 1 MSTTGKVKWFDAKKGFGFIEQE----SGGDVFVHFRAIQGDGYKSLEEGQEVEFDLEDGE 56
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 57 KG--PQAVNV 64
>gi|291280012|ref|YP_003496847.1| cold shock protein [Deferribacter desulfuricans SSM1]
gi|290754714|dbj|BAI81091.1| cold shock protein [Deferribacter desulfuricans SSM1]
Length = 66
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFIT + G DVF+H +++ G +L EG+ V ++ ++
Sbjct: 1 MREGTVKWFNDSKGYGFITEDN----GQDVFVHHTSIQKDGFKSLAEGERVKFEVEKSPK 56
Query: 62 NGKYSAENL 70
+A N+
Sbjct: 57 G--LAAINV 63
>gi|254282468|ref|ZP_04957436.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR51-B]
gi|219678671|gb|EED35020.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR51-B]
Length = 68
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ G++KW+N KGYGFI E G DVF+H SA+ G L++GQ V +
Sbjct: 1 MATVSGTVKWFNETKGYGFIEQE----GGPDVFVHFSAIQGDGFKTLSDGQKVEFTVANG 56
Query: 60 DANGKYSAENL 70
AEN+
Sbjct: 57 QKG--PQAENV 65
>gi|170769983|ref|ZP_02904436.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
gi|170121167|gb|EDS90098.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
Length = 70
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P G DVF+H +A+ S L E Q V + Q G
Sbjct: 6 TGLVKWFNADKGFGFISPSD---GGKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGPR-G 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVVTL 70
>gi|319787350|ref|YP_004146825.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465862|gb|ADV27594.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ E G+DVF+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RETGTVKWFNDAKGFGFISREN----GEDVFVHFRAIQMQGFKSLKEGQKVTFTVVQGQK 59
Query: 62 NGKYSAEN 69
+ A
Sbjct: 60 GLQADAVQ 67
>gi|94500606|ref|ZP_01307136.1| Cold shock protein [Oceanobacter sp. RED65]
gi|94427161|gb|EAT12141.1| Cold shock protein [Oceanobacter sp. RED65]
Length = 171
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG +KW+N KG+GFIT + G+DVF+H ++ G +L+EGQ V + V
Sbjct: 105 RERGLVKWFNVKKGFGFITRDN----GEDVFVHFRSIRGTGHRSLSEGQNVKFSVVDGQK 160
Query: 62 NGKYSAENLKLVP 74
AE++ +V
Sbjct: 161 G--LQAEDVSVVK 171
>gi|294814134|ref|ZP_06772777.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064]
gi|294326733|gb|EFG08376.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064]
Length = 132
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GF++ + G DVF+H S + G+ +L GQ V + V
Sbjct: 7 PTGKVKWFNSEKGFGFLSRDD----GGDVFVHSSVL-PDGVDSLKPGQRVEFGVVAGQRG 61
Query: 63 GKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 62 D--QALSVVVLDPTPS 75
>gi|254283369|ref|ZP_04958337.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR51-B]
gi|219679572|gb|EED35921.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR51-B]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q
Sbjct: 6 TGTVKWFNESKGFGFIE----QKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ V
Sbjct: 61 -PQAENIVAV 69
>gi|293395718|ref|ZP_06640000.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291421655|gb|EFE94902.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITP DVF+H SA+ S G L EGQ V + +
Sbjct: 5 TGHVKWFNESKGFGFITPAD---GSKDVFVHFSAIVSDGFKTLAEGQQVEFSIQDSQRG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAANVVAI 69
>gi|152975126|ref|YP_001374643.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152023878|gb|ABS21648.1| putative cold-shock DNA-binding domain protein [Bacillus
cytotoxicus NVH 391-98]
Length = 65
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H +A+ G +L EGQ V++D V+ +
Sbjct: 2 QGKVKWFNNEKGFGFIEIE----GADDVFVHFTAIQGEGYKSLEEGQEVSFDIVEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|296134263|ref|YP_003641510.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
gi|296032841|gb|ADG83609.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
Length = 65
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G DVF+H SA+ G L EGQ V ++ V+
Sbjct: 3 GKVKWFNQEKGFGFIERED----GGDVFVHFSAIQEEGFKTLAEGQEVEFEIVEGARG-- 56
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 57 PQAANVVKL 65
>gi|253584039|ref|ZP_04861237.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
gi|251834611|gb|EES63174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
Length = 66
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI+ E G+D F+H S + S G +L EGQ VT++ + +
Sbjct: 1 MLKGTVKWFNKDKGFGFISGED----GNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGEK 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--PVASNVTV 65
>gi|118477138|ref|YP_894289.1| cold-shock DNA-binding protein family protein [Bacillus
thuringiensis str. Al Hakam]
gi|228926734|ref|ZP_04089802.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932984|ref|ZP_04095847.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|118416363|gb|ABK84782.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
str. Al Hakam]
gi|228826585|gb|EEM72356.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832847|gb|EEM78416.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 77
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 14 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRG- 68
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 69 -PQAANVVKL 77
>gi|114049935|emb|CAK50952.1| putative cold shock protein [Streptomyces ambofaciens]
gi|114050157|emb|CAK51190.1| putative cold shock protein [Streptomyces ambofaciens]
Length = 67
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|85711368|ref|ZP_01042427.1| Cold shock protein [Idiomarina baltica OS145]
gi|85694869|gb|EAQ32808.1| Cold shock protein [Idiomarina baltica OS145]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ Q
Sbjct: 6 NGTVKWFNEAKGFGFIE----QQGGADVFAHFSAITGDGFKTLNEGQRVSFAITQGPKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENIVAL 69
>gi|322833919|ref|YP_004213946.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|321169120|gb|ADW74819.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA++S G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAISSNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|322420677|ref|YP_004199900.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320127064|gb|ADW14624.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 66
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E GDDVF+H SA+ G +L EG VT++ +
Sbjct: 1 MVNGTVKWFNDSKGFGFIEQEN----GDDVFVHFSAITGDGFKSLAEGDSVTFEVAKGPK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--LQAANVS 64
>gi|315126396|ref|YP_004068399.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913]
gi|315014910|gb|ADT68248.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913]
Length = 72
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q
Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELQQGPK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--LHATNI 64
>gi|302392640|ref|YP_003828460.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
gi|302204717|gb|ADL13395.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
Length = 66
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ +KGYGFI DDVF+H SA+ G +L EG+ V ++ V+ D
Sbjct: 1 METGTVKWFDSNKGYGFIER----PEEDDVFVHFSAIQEDGFKDLEEGEEVEFNIVEGDK 56
Query: 62 NGKYSAENLKLV 73
AE++ +
Sbjct: 57 G--LQAEDVVKL 66
>gi|84501623|ref|ZP_00999795.1| cold shock family protein [Oceanicola batsensis HTCC2597]
gi|84390244|gb|EAQ02803.1| cold shock family protein [Oceanicola batsensis HTCC2597]
Length = 68
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V Y+ Q+
Sbjct: 1 MPVGTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYEL-QDGR 56
Query: 62 NGKYSAENLKLV 73
+G+ A +LKL+
Sbjct: 57 DGRKMASDLKLL 68
>gi|323486640|ref|ZP_08091961.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum
WAL-14163]
gi|323692214|ref|ZP_08106457.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323400021|gb|EGA92398.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum
WAL-14163]
gi|323503788|gb|EGB19607.1| cold-shock DNA-binding domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 66
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V ++ V
Sbjct: 1 MNKGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLEEGAQVEFEVVNGAK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQATNVVKL 66
>gi|260550026|ref|ZP_05824241.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
gi|260407018|gb|EEX00496.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
Length = 71
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + G DVF H S + + G L EGQ V + Q
Sbjct: 4 ATGTVKWFNETKGFGFIQTD----EGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG 59
Query: 63 GKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 60 --PQASNITIVTNA 71
>gi|219881898|gb|ACL52164.1| cold response protein 1 [Metarhizium anisopliae]
gi|322693450|gb|EFY85310.1| cold response protein 1 [Metarhizium acridum CQMa 102]
gi|322707280|gb|EFY98859.1| cold response protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 70
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N +KGYGFITPE SG D+F+H A+ +G +L EGQ VT++ VQ
Sbjct: 4 RQNGVVKWFNEEKGYGFITPE----SGPDLFVHFRAIEGSGFRSLKEGQAVTFEAVQGQK 59
Query: 62 NGKYSAENLKL 72
A+ +++
Sbjct: 60 G--MQADKVQV 68
>gi|260773863|ref|ZP_05882778.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
gi|260610824|gb|EEX36028.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
Length = 70
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI+ + G DVF+H +++ S G L EGQ V+++ +
Sbjct: 5 TTGTVKWFNETKGFGFISQDN---GGKDVFVHFNSIVSDGFKTLAEGQKVSFNVEEGKKG 61
Query: 63 GKYSAENLKLV 73
A + +
Sbjct: 62 --PQATEVTPL 70
>gi|225459483|ref|XP_002285837.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 228
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFI P+ G+D+F+H++++ S G L+EG+ V + V + +G
Sbjct: 8 TGTVKWFSGQKGFGFIAPDD---GGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDG 63
Query: 64 KYSAENLKLV 73
+ A + V
Sbjct: 64 RTKAVEVTAV 73
>gi|89076141|ref|ZP_01162499.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|89048151|gb|EAR53735.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V +D Q
Sbjct: 5 TGIVKWFNEEKGFGFITQDN---GGADVFVHFRAITGEGFKTLAEGQKVAFDIEQGQKG- 60
Query: 64 KYSAENLKL 72
A N++
Sbjct: 61 -PQAANVEK 68
>gi|56461593|ref|YP_156874.1| cold shock protein [Idiomarina loihiensis L2TR]
gi|56180603|gb|AAV83325.1| Cold shock protein [Idiomarina loihiensis L2TR]
Length = 69
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI E G DVF H SA++S G LTEGQ V + Q
Sbjct: 6 TGSVKWFNEAKGFGFIEREN----GADVFAHFSAISSDGFKTLTEGQRVEFAVTQGPKG- 60
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 61 -PQAENIVAL 69
>gi|16760938|ref|NP_456555.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29141370|ref|NP_804712.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213053459|ref|ZP_03346337.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213421410|ref|ZP_03354476.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
gi|213424976|ref|ZP_03357726.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213580718|ref|ZP_03362544.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
gi|213864720|ref|ZP_03386839.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
gi|289811876|ref|ZP_06542505.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
gi|289829487|ref|ZP_06547099.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|20137745|sp|P58726|CSPJ_SALTI RecName: Full=Cold shock-like protein CspJ
gi|25296117|pir||AD0755 cold shock protein [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16503235|emb|CAD05743.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136997|gb|AAO68561.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 70
Score = 83.9 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S L E Q V + Q
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|327440660|dbj|BAK17025.1| cold shock protein [Solibacillus silvestris StLB046]
Length = 66
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H+G++KW++ +KGYGFI G+DVF+H + + G +L EGQ+V +D V
Sbjct: 1 MHQGTVKWFDNEKGYGFIESAD----GEDVFVHFTGIQEEGFRSLDEGQVVEFDLVDGIR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|294139962|ref|YP_003555940.1| stress response protein CspD [Shewanella violacea DSS12]
gi|293326431|dbj|BAJ01162.1| stress response protein CspD [Shewanella violacea DSS12]
Length = 73
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI P G+DVF H SA+ G L GQ V Y
Sbjct: 1 MMKGTVKWFNNTKGFGFICP---GAGGEDVFAHYSAIQMEGYRTLVAGQTVEYKVEAGPK 57
Query: 62 NGKYSAENLKLVPK 75
A + +
Sbjct: 58 G--MHALAITPADE 69
>gi|146309833|ref|YP_001174907.1| major cold shock protein [Enterobacter sp. 638]
gi|261341820|ref|ZP_05969678.1| hypothetical protein ENTCAN_08306 [Enterobacter cancerogenus ATCC
35316]
gi|145316709|gb|ABP58856.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
gi|288316195|gb|EFC55133.1| putative cold shock protein [Enterobacter cancerogenus ATCC
35316]
Length = 70
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 6 TGLVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNEGYKSLDEGQKVSFTIESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAGNV 67
>gi|27366937|ref|NP_762464.1| cold shock protein [Vibrio vulnificus CMCP6]
gi|37676712|ref|NP_937108.1| cold shock protein [Vibrio vulnificus YJ016]
gi|320158815|ref|YP_004191193.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O]
gi|27358504|gb|AAO07454.1|AE016809_216 Cold shock protein [Vibrio vulnificus CMCP6]
gi|37201255|dbj|BAC97078.1| cold shock protein [Vibrio vulnificus YJ016]
gi|319934127|gb|ADV88990.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O]
Length = 70
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+ + G+DVF+H +++ S G L EGQ VT++ Q
Sbjct: 6 TGSVKWFNETKGFGFISQDN---GGNDVFVHFNSIVSTGFKTLAEGQRVTFEVEQGKKG- 61
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 62 -PQAANVTAL 70
>gi|195648068|gb|ACG43502.1| glycine-rich protein 2b [Zea mays]
Length = 208
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFITP+ +D+F+H+S++ S G +L +G V Y + +G
Sbjct: 8 GTVKWFNGTKGFGFITPDD---GSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGX 63
Query: 65 YSAENLK 71
A ++
Sbjct: 64 AKALDVT 70
>gi|194366422|ref|YP_002029032.1| cold-shock DNA-binding domain-containing protein
[Stenotrophomonas maltophilia R551-3]
gi|194349226|gb|ACF52349.1| cold-shock DNA-binding domain protein [Stenotrophomonas
maltophilia R551-3]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ ++G+DVF+H A+ + G +L EGQ V+++ VQ
Sbjct: 4 RETGTVKWFNDAKGFGFISR----QNGEDVFVHFRAIETQGFKSLKEGQAVSFEVVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--LQADKVQPV 69
>gi|77362297|ref|YP_341871.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
gi|76877208|emb|CAI89425.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
Length = 68
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI E SG DVF H SA+ S G L EGQ V + Q
Sbjct: 4 TTGSVKWFNEAKGFGFIEQE----SGPDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKG 59
Query: 63 GKYSAENL 70
AEN+
Sbjct: 60 --PQAENI 65
>gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|229494927|ref|ZP_04388678.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226186960|dbj|BAH35064.1| probable cold shock protein [Rhodococcus erythropolis PR4]
gi|229318151|gb|EEN84021.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 67
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI PE DVF+H S + S G L E Q V ++ Q +
Sbjct: 1 MAEGIVKWFNSEKGFGFIAPED---GSADVFVHYSEIQSGGFRTLEENQRVAFEIGQGNK 57
Query: 62 NGKYSAENLKLV 73
A + +V
Sbjct: 58 G--PQATGVTIV 67
>gi|257898616|ref|ZP_05678269.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
gi|257836528|gb|EEV61602.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
Length = 76
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KGYGFI+ + + +++F+H +A+ G L E Q+V ++ ++ +
Sbjct: 1 MTTGIVKWFDNKKGYGFISYDDT----EEIFVHFTAIEEEGFKTLEENQVVEFEIIEGNR 56
Query: 62 NGKYSAENLKL 72
A ++K
Sbjct: 57 G--TQAAHVKK 65
>gi|254522559|ref|ZP_05134614.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14]
gi|219720150|gb|EED38675.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ ++G+DVF+H A+ + G +L EGQ VT++ VQ
Sbjct: 4 RETGTVKWFNDAKGFGFISR----QNGEDVFVHFRAIETHGFKSLKEGQSVTFEVVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--LQADKVQPV 69
>gi|77166067|ref|YP_344592.1| cold-shock protein, DNA-binding [Nitrosococcus oceani ATCC 19707]
gi|76884381|gb|ABA59062.1| cold-shock DNA-binding protein family [Nitrosococcus oceani ATCC
19707]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFI E G D+F+H ++ +G L EGQ V++ VQ
Sbjct: 5 QTGTVKWFNDSKGYGFIQRE----GGSDLFVHYRSITGSGHRTLKEGQQVSFIEVQGQKG 60
Query: 63 GKYSAENLKLV 73
A+++ ++
Sbjct: 61 --PQADDVTIL 69
>gi|51595435|ref|YP_069626.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 32953]
gi|108808497|ref|YP_652413.1| cold shock protein CspE [Yersinia pestis Antiqua]
gi|145599922|ref|YP_001163998.1| cold shock protein CspE [Yersinia pestis Pestoides F]
gi|149365504|ref|ZP_01887539.1| putative cold shock protein [Yersinia pestis CA88-4125]
gi|153947984|ref|YP_001401920.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 31758]
gi|161484846|ref|NP_668492.2| cold shock protein CspE [Yersinia pestis KIM 10]
gi|161511416|ref|NP_992489.2| cold shock protein CspE [Yersinia pestis biovar Microtus str.
91001]
gi|162418633|ref|YP_001606345.1| cold shock protein CspE [Yersinia pestis Angola]
gi|165925190|ref|ZP_02221022.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937609|ref|ZP_02226171.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008509|ref|ZP_02229407.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212360|ref|ZP_02238395.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398559|ref|ZP_02304083.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422542|ref|ZP_02314295.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423259|ref|ZP_02315012.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025252|ref|YP_001721757.1| cold shock protein CspE [Yersinia pseudotuberculosis YPIII]
gi|186894465|ref|YP_001871577.1| cold shock protein CspE [Yersinia pseudotuberculosis PB1/+]
gi|218929676|ref|YP_002347551.1| cold shock protein CspE [Yersinia pestis CO92]
gi|229838141|ref|ZP_04458300.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229895932|ref|ZP_04511102.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides
A]
gi|229898749|ref|ZP_04513894.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901480|ref|ZP_04516602.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516]
gi|238755048|ref|ZP_04616396.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
gi|238758047|ref|ZP_04619228.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236]
gi|238762891|ref|ZP_04623859.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638]
gi|238785727|ref|ZP_04629701.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970]
gi|238791629|ref|ZP_04635267.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
gi|238795419|ref|ZP_04638934.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969]
gi|270263689|ref|ZP_06191958.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13]
gi|270489665|ref|ZP_06206739.1| cold shock protein CspE [Yersinia pestis KIM D27]
gi|284988376|ref|YP_003422335.1| cold shock protein [Yersinia pestis Nepal516]
gi|293392426|ref|ZP_06636748.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|51588717|emb|CAH20328.1| putative cold shock protein [Yersinia pseudotuberculosis IP
32953]
gi|108780410|gb|ABG14468.1| cold shock protein E (CspE) [Yersinia pestis Antiqua]
gi|115348287|emb|CAL21218.1| putative cold shock protein [Yersinia pestis CO92]
gi|145211618|gb|ABP41025.1| cold shock protein E (CspE) [Yersinia pestis Pestoides F]
gi|149291917|gb|EDM41991.1| putative cold shock protein [Yersinia pestis CA88-4125]
gi|152959479|gb|ABS46940.1| cold shock DNA-binding domain protein [Yersinia
pseudotuberculosis IP 31758]
gi|162351448|gb|ABX85396.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
gi|165914359|gb|EDR32974.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922797|gb|EDR39948.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992891|gb|EDR45192.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206291|gb|EDR50771.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958556|gb|EDR55577.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051063|gb|EDR62471.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057429|gb|EDR67175.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751786|gb|ACA69304.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186697491|gb|ACC88120.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229681409|gb|EEO77503.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516]
gi|229688297|gb|EEO80368.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694507|gb|EEO84554.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700855|gb|EEO88884.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides
A]
gi|238698902|gb|EEP91651.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638]
gi|238703801|gb|EEP96337.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236]
gi|238706752|gb|EEP99121.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
gi|238713367|gb|EEQ05405.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970]
gi|238720538|gb|EEQ12339.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969]
gi|238729245|gb|EEQ20761.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
gi|270042573|gb|EFA15668.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13]
gi|270338169|gb|EFA48946.1| cold shock protein CspE [Yersinia pestis KIM D27]
gi|291425080|gb|EFE98287.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIASNGFKTLAEGQRVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|262275442|ref|ZP_06053252.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886]
gi|262220687|gb|EEY72002.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886]
Length = 68
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI E G DVF+H A+ G L EGQ V ++ Q
Sbjct: 5 TGTVKWFNEEKGFGFIQQEN----GPDVFVHFRAITGEGFKTLAEGQQVAFEIEQGQKG- 59
Query: 64 KYSAENLKLV 73
A N++ V
Sbjct: 60 -PQAANVEKV 68
>gi|190575103|ref|YP_001972948.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
gi|190013025|emb|CAQ46657.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI+ E G+DVF+H A+ + G +L EGQ VT+ VQ
Sbjct: 4 RETGTVKWFNDAKGFGFISREN----GEDVFVHFRAIQTQGFKSLKEGQKVTFTVVQGQK 59
Query: 62 NGKYSAEN 69
+ A
Sbjct: 60 GLQADAVQ 67
>gi|168015213|ref|XP_001760145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688525|gb|EDQ74901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 187
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ + GDD+F+H++++ + G +L EG++V + ++ +
Sbjct: 14 ETGKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQV-ESSED 69
Query: 63 GKYSAENLK 71
G+ A +
Sbjct: 70 GRTKALAVT 78
>gi|161502877|ref|YP_001569989.1| hypothetical protein SARI_00934 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864224|gb|ABX20847.1| hypothetical protein SARI_00934 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 70
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S L E Q V + Q
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFRTLNENQEVEFSVEQGPKG- 61
Query: 64 KYSAENLKLV 73
SA ++ +
Sbjct: 62 -PSAVDVVAL 70
>gi|160878802|ref|YP_001557770.1| cold-shock DNA-binding domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160427468|gb|ABX41031.1| cold-shock DNA-binding domain protein [Clostridium
phytofermentans ISDg]
Length = 66
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GF++ E G+DVF+H SA+ G L EG+ V ++ V+ +
Sbjct: 1 MKKGTVKWFNAKKGFGFLSDE----EGNDVFVHFSALNMDGFKVLEEGEAVAFEVVEGEK 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVTKL 66
>gi|218676106|ref|YP_002394925.1| cold shock protein [Vibrio splendidus LGP32]
gi|218324374|emb|CAV25748.1| cold shock protein [Vibrio splendidus LGP32]
Length = 76
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V+++
Sbjct: 11 NTGTVKWFNEEKGFGFISQDN---GGADVFVHFRAIASEGFKTLKEGQKVSFEVENGQKG 67
Query: 63 GKYSAENL 70
A N+
Sbjct: 68 --LQAANV 73
>gi|332140725|ref|YP_004426463.1| putative Cold shock-like protein [Alteromonas macleodii str.
'Deep ecotype']
gi|327550747|gb|AEA97465.1| putative Cold shock-like protein [Alteromonas macleodii str.
'Deep ecotype']
Length = 70
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GF+TPE G DVF+H ++AS G L EGQ V+++ Q
Sbjct: 6 NGTVKWFNEEKGFGFLTPE---AGGKDVFVHFRSIASDGFKTLAEGQEVSFEVEQGQKG- 61
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 62 -PQAANVVV 69
>gi|84385112|ref|ZP_00988144.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01]
gi|86144296|ref|ZP_01062628.1| cold shock DNA-binding domain protein [Vibrio sp. MED222]
gi|218676272|ref|YP_002395091.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32]
gi|84379709|gb|EAP96560.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01]
gi|85837195|gb|EAQ55307.1| cold shock DNA-binding domain protein [Vibrio sp. MED222]
gi|218324540|emb|CAV26032.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E G DVF H SA+ G L EGQ V + Q
Sbjct: 6 TGKVKWFNETKGFGFIEQEN----GPDVFAHFSAITGDGFKTLAEGQQVEFTVSQGQKG- 60
Query: 64 KYSAENLKLV 73
A+++K++
Sbjct: 61 -PQADSIKVL 69
>gi|311694973|gb|ADP97846.1| cold-shock DNA-binding domain protein [marine bacterium HP15]
Length = 103
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KGYGFI +G + DD+F H S+V G L GQ VT+D +D
Sbjct: 1 MPRGKVKWFNNAKGYGFIIEDGCS---DDLFAHFSSVQMDGYKTLKAGQAVTFDKKPSDK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--IHAVNI 64
>gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [Mycobacterium kansasii ATCC
12478]
Length = 134
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDSEKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIDPPPS 70
>gi|28199859|ref|NP_780173.1| temperature acclimation protein B [Xylella fastidiosa Temecula1]
gi|71275239|ref|ZP_00651526.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
gi|71899540|ref|ZP_00681696.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|71899925|ref|ZP_00682072.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|170731236|ref|YP_001776669.1| cold-shock DNA-binding domain-containing protein [Xylella
fastidiosa M12]
gi|182682610|ref|YP_001830770.1| cold-shock DNA-binding domain-containing protein [Xylella
fastidiosa M23]
gi|28057980|gb|AAO29822.1| temperature acclimation protein B [Xylella fastidiosa Temecula1]
gi|71164048|gb|EAO13763.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
gi|71730288|gb|EAO32372.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|71730669|gb|EAO32744.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
gi|167966029|gb|ACA13039.1| putative cold-shock DNA-binding domain protein [Xylella
fastidiosa M12]
gi|182632720|gb|ACB93496.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23]
gi|307578893|gb|ADN62862.1| temperature acclimation protein B [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 73
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFIT + +G D+F+H A+ G +L EGQ V++ VQ
Sbjct: 11 GTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQKG-- 64
Query: 65 YSAENLKLV 73
A+ ++++
Sbjct: 65 MQADQVQVL 73
>gi|296532288|ref|ZP_06895027.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
gi|296267364|gb|EFH13250.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
Length = 68
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE DVFLH S V +GL EG+ + YD Q
Sbjct: 1 MAFGTVKWFNATKGYGFIQPED---GSKDVFLHVSDVQRSGLREPREGERLQYDLQQGQQ 57
Query: 62 NGKYSAENLK 71
GK SA NL+
Sbjct: 58 -GKVSATNLR 66
>gi|229016428|ref|ZP_04173370.1| Cold shock protein cspB [Bacillus cereus AH1273]
gi|229022656|ref|ZP_04179181.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|228738665|gb|EEL89136.1| Cold shock protein cspB [Bacillus cereus AH1272]
gi|228744836|gb|EEL94896.1| Cold shock protein cspB [Bacillus cereus AH1273]
Length = 67
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ + +
Sbjct: 1 MTVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|163794316|ref|ZP_02188288.1| cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
gi|159180484|gb|EDP65005.1| cold-shock DNA-binding domain protein [alpha proteobacterium
BAL199]
Length = 68
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI PE DVFLH SAV AGL + EGQ V Y+ ++
Sbjct: 1 MAVGTVKFFNTTKGFGFIQPED---GSKDVFLHVSAVERAGLRSPNEGQKVQYEI-ESGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA N+ +
Sbjct: 57 DGRTSAGNISYL 68
>gi|319400565|gb|EFV88795.1| cold shock protein cspD [Staphylococcus epidermidis FRI909]
Length = 66
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFI + G+DVF+H S +A G +L EGQ V +D V+
Sbjct: 1 MNNGTVKWFNVDKGFGFIERDN----GNDVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--EQATNVVV 65
>gi|282863804|ref|ZP_06272862.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|282561505|gb|EFB67049.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
Length = 67
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|257455421|ref|ZP_05620656.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
gi|257447383|gb|EEV22391.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
Length = 70
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI SG+D+F+H A+ G +L +GQ V + V+
Sbjct: 4 REQGIVKWFNDSKGFGFIQR----NSGEDIFVHFRAIQGDGYRSLQDGQKVEFIVVEGQK 59
Query: 62 NGKYSAENLKLVP 74
AE + V
Sbjct: 60 G--LQAEEVTKVE 70
>gi|229160646|ref|ZP_04288640.1| Cold shock-like protein cspB [Bacillus cereus R309803]
gi|228622845|gb|EEK79677.1| Cold shock-like protein cspB [Bacillus cereus R309803]
Length = 65
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEIE----GADDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|223470486|gb|ACM90505.1| cold shock protein [Psychromonas arctica]
Length = 68
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q
Sbjct: 5 QGTVKWFNESKGFGFIE----QASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGPKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 60 -PQAENIVAL 68
>gi|120554677|ref|YP_959028.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120324526|gb|ABM18841.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
VT8]
Length = 103
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KGYGFI +G + DD+F H S+V G L GQ VT+D +D
Sbjct: 1 MPRGKVKWFNNAKGYGFIIEDGCS---DDLFAHFSSVQMDGYKTLKAGQTVTFDKKPSDK 57
Query: 62 NGKYSAENL 70
A N+
Sbjct: 58 G--VHAINI 64
>gi|238920340|ref|YP_002933855.1| hypothetical protein NT01EI_2450 [Edwardsiella ictaluri 93-146]
gi|269139515|ref|YP_003296216.1| old-shock domain family protein [Edwardsiella tarda EIB202]
gi|238869909|gb|ACR69620.1| conserved domain protein [Edwardsiella ictaluri 93-146]
gi|267985176|gb|ACY85005.1| old-shock domain family protein [Edwardsiella tarda EIB202]
gi|304559404|gb|ADM42068.1| putative cold shock protein CspE2 [Edwardsiella tarda FL6-60]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+ G L EGQ V Y Q+
Sbjct: 4 KTGQVKWFNESKGFGFIEQHD---GGKDVFVHFSAITGDGFKTLAEGQRVEYTI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 60 GPAAANVVAL 69
>gi|229916626|ref|YP_002885272.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
gi|229468055|gb|ACQ69827.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
Length = 65
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G DVF+H SA+ S G +L EGQ V ++ V +
Sbjct: 3 GKVKWFNSEKGFGFIEVE----GGKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGERG-- 56
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 57 PQAANVVKL 65
>gi|171778705|ref|ZP_02919801.1| hypothetical protein STRINF_00653 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|171282662|gb|EDT48086.1| hypothetical protein STRINF_00653 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 67
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI+ E G DVF H S + S G +L +GQ V +D Q +
Sbjct: 1 MVQGTVKWFNTDKGFGFISQEN----GADVFAHFSQIKSNGFKSLEDGQKVQFDVEQGER 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--LQAVNIIKIS 67
>gi|322832644|ref|YP_004212671.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|321167845|gb|ADW73544.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 3 MMKGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQDQGFKTLAEGQNVQFTIENGAK 59
Query: 62 NGKYSAENLKLV 73
SA N+ +
Sbjct: 60 G--PSAANVTAI 69
>gi|209972088|gb|ACJ03555.1| cold shock protein [Bacillus thuringiensis serovar finitimus]
Length = 67
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ + +
Sbjct: 1 MAVTGQVKWFNSEKGFGFIEV----PGENDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|94676996|ref|YP_588711.1| cold shock protein CspE [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94220146|gb|ABF14305.1| cold shock-like protein CspE [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFITPE DVF+H SA+ S G L EGQ V ++ N A G
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60
Query: 64 KYSAENLKL 72
+A+ + +
Sbjct: 61 PSAADVIAI 69
>gi|88703658|ref|ZP_01101374.1| cold shock DNA-binding domain protein [Congregibacter litoralis
KT71]
gi|88702372|gb|EAQ99475.1| cold shock DNA-binding domain protein [Congregibacter litoralis
KT71]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q
Sbjct: 6 TGTVKWFNESKGFGFIE----QKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ V
Sbjct: 61 -PQAENIVAV 69
>gi|307825897|ref|ZP_07656112.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307733016|gb|EFO03878.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 69
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFI E G DVF+H SA+ AG L EGQ VT + Q
Sbjct: 7 GTVKWFNDEKGFGFIEQE----GGKDVFVHHSAINGAGRKTLREGQKVTMEVTQGQKG-- 60
Query: 65 YSAENLKL 72
AEN+
Sbjct: 61 PQAENVTP 68
>gi|302557419|ref|ZP_07309761.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|302475037|gb|EFL38130.1| conserved domain-containing protein [Streptomyces griseoflavus
Tu4000]
Length = 67
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A G L EGQ VT+D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAGQGFRELLEGQKVTFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|253575890|ref|ZP_04853224.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844684|gb|EES72698.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 65
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ + G L EGQ V ++ V+ G
Sbjct: 2 QGKVKWFNAEKGYGFIETE----EGGDVFVHFSAIQAEGFKTLEEGQSVEFEIVEGAR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|238758373|ref|ZP_04619551.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236]
gi|238703496|gb|EEP96035.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236]
Length = 66
Score = 83.9 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 2 TGLVKWFNADKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIESGAKG- 57
Query: 64 KYSAENLKLV 73
+A N+ ++
Sbjct: 58 -PAAANVVVL 66
>gi|78044182|ref|YP_359029.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996297|gb|ABB15196.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
Z-2901]
Length = 65
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ G
Sbjct: 2 QGKVKWFDPAKGYGFIERED----GGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTR-G 56
Query: 64 KYSAENLKL 72
+A+ +KL
Sbjct: 57 PQAADVVKL 65
>gi|238789312|ref|ZP_04633099.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
gi|238722644|gb|EEQ14297.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
Length = 84
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y +
Sbjct: 19 KTGQVKWFNEAKGFGFIEQHD---GGKDVFVHFSAIATDGFKTLAEGQRVEYTIQDSPRG 75
Query: 63 GKYSAENL 70
+A N+
Sbjct: 76 --PAAANV 81
>gi|123441858|ref|YP_001005841.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332162200|ref|YP_004298777.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122088819|emb|CAL11625.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318606256|emb|CBY27754.1| cold shock proteins [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325666430|gb|ADZ43074.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862901|emb|CBX73038.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y Q+
Sbjct: 4 KTGQVKWFNEAKGFGFIEQHD---GGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 60 GPAAANVVAL 69
>gi|254492585|ref|ZP_05105756.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
thiooxidans DMS010]
gi|224462106|gb|EEF78384.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
thiooxydans DMS010]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI G DVF+H +A+ S G L EGQ VT + Q
Sbjct: 6 TGTVKWFNDAKGFGFIE----QVDGPDVFVHHTAIKSEGFRTLKEGQAVTMEVTQGQKG- 60
Query: 64 KYSAENL 70
AEN+
Sbjct: 61 -PQAENV 66
>gi|30019750|ref|NP_831381.1| cold shock protein [Bacillus cereus ATCC 14579]
gi|206970763|ref|ZP_03231715.1| cold shock protein CspB [Bacillus cereus AH1134]
gi|218233734|ref|YP_002366385.1| cold shock protein CspB [Bacillus cereus B4264]
gi|218896633|ref|YP_002445044.1| cold shock protein CspB [Bacillus cereus G9842]
gi|228900283|ref|ZP_04064513.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
gi|228907338|ref|ZP_04071196.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200]
gi|228920413|ref|ZP_04083758.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228938814|ref|ZP_04101414.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228952082|ref|ZP_04114177.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228957979|ref|ZP_04119716.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964684|ref|ZP_04125791.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971695|ref|ZP_04132316.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978304|ref|ZP_04138681.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407]
gi|229043455|ref|ZP_04191165.1| Cold shock-like protein cspB [Bacillus cereus AH676]
gi|229069255|ref|ZP_04202545.1| Cold shock-like protein cspB [Bacillus cereus F65185]
gi|229078885|ref|ZP_04211437.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
gi|229109158|ref|ZP_04238757.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
gi|229127029|ref|ZP_04256028.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
gi|229144315|ref|ZP_04272721.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24]
gi|229149903|ref|ZP_04278131.1| Cold shock-like protein cspB [Bacillus cereus m1550]
gi|229172343|ref|ZP_04299903.1| Cold shock-like protein cspB [Bacillus cereus MM3]
gi|229189784|ref|ZP_04316797.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
gi|296502284|ref|YP_003663984.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|29895295|gb|AAP08582.1| Cold shock protein [Bacillus cereus ATCC 14579]
gi|206734399|gb|EDZ51569.1| cold shock protein CspB [Bacillus cereus AH1134]
gi|218161691|gb|ACK61683.1| cold shock protein CspB [Bacillus cereus B4264]
gi|218544906|gb|ACK97300.1| cold shock protein CspB [Bacillus cereus G9842]
gi|228593698|gb|EEK51504.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
gi|228611139|gb|EEK68401.1| Cold shock-like protein cspB [Bacillus cereus MM3]
gi|228633584|gb|EEK90185.1| Cold shock-like protein cspB [Bacillus cereus m1550]
gi|228639102|gb|EEK95526.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24]
gi|228656382|gb|EEL12221.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
gi|228674168|gb|EEL29413.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
gi|228704299|gb|EEL56733.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
gi|228713742|gb|EEL65627.1| Cold shock-like protein cspB [Bacillus cereus F65185]
gi|228725833|gb|EEL77080.1| Cold shock-like protein cspB [Bacillus cereus AH676]
gi|228781321|gb|EEM29522.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407]
gi|228787785|gb|EEM35743.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794934|gb|EEM42433.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801686|gb|EEM48566.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807614|gb|EEM54138.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228820663|gb|EEM66688.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228839043|gb|EEM84339.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228852199|gb|EEM96995.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200]
gi|228859318|gb|EEN03748.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
gi|296323336|gb|ADH06264.1| cold shock protein [Bacillus thuringiensis BMB171]
gi|326939318|gb|AEA15214.1| cold shock protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 65
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGDGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|317471073|ref|ZP_07930446.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|316901441|gb|EFV23382.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 64
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFIT E +G+DVF+H S +A+ G +L +GQ VT++ Q +
Sbjct: 1 GTVKWFNSTKGFGFITNES---TGEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGNRG-- 55
Query: 65 YSAENL 70
A N+
Sbjct: 56 LQAVNV 61
>gi|307315884|ref|ZP_07595388.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307322018|ref|ZP_07601396.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306892307|gb|EFN23115.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306898474|gb|EFN29157.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 90
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+
Sbjct: 24 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 78
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 79 TGKSKAENVSIL 90
>gi|299770874|ref|YP_003732900.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
gi|298700962|gb|ADI91527.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
Length = 71
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + G D+F H + + + G L EGQ V + VQ
Sbjct: 5 TGTVKWFNETKGFGFIVTD----EGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG- 59
Query: 64 KYSAENLKLVPKS 76
A N+ ++ S
Sbjct: 60 -PQASNIVILQNS 71
>gi|116781927|gb|ABK22299.1| unknown [Picea sitchensis]
gi|148909032|gb|ABR17619.1| unknown [Picea sitchensis]
gi|224285091|gb|ACN40273.1| unknown [Picea sitchensis]
Length = 205
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KGYGFITP+ +D+F+H++++ S G +L EG+ V Y V+++ G+
Sbjct: 8 GKVKWFDSTKGYGFITPDD---GSEDLFVHQTSIHSNGFRSLAEGEAVEY-TVEHENGGR 63
Query: 65 YSAENLK 71
A ++
Sbjct: 64 TKALDVT 70
>gi|148975746|ref|ZP_01812577.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3]
gi|145964819|gb|EDK30071.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3]
Length = 70
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N +KG+GFI+ + G DVF+H A+ S G L EGQ V+++
Sbjct: 5 NTGTVKWFNEEKGFGFISQDN---GGADVFVHFRAIVSEGFKTLKEGQKVSFEVENGQKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --LQAANV 67
>gi|152995681|ref|YP_001340516.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150836605|gb|ABR70581.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H SA+AS+G L EGQ V +
Sbjct: 6 KGTVKWFNEIKGFGFIEQE----SGPDVFAHFSAIASSGFKTLAEGQQVEFVVTAGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 61 -PQAENITVL 69
>gi|76577745|gb|ABA54143.1| putative glycine-rich protein [Picea glauca]
Length = 156
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KGYGFITP+ +D+F+H++++ S G +L EG+ V Y V+++ G+
Sbjct: 8 GKVKWFDSTKGYGFITPDD---GSEDLFVHQTSIHSNGFRSLAEGEAVEY-TVEHENGGR 63
Query: 65 YSAENLK 71
A ++
Sbjct: 64 TKALDVT 70
>gi|88811641|ref|ZP_01126895.1| probable cold-shock protein [Nitrococcus mobilis Nb-231]
gi|88791032|gb|EAR22145.1| probable cold-shock protein [Nitrococcus mobilis Nb-231]
Length = 70
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KGYGFI+ E G DVF+H A+ G L EGQ V +D V+
Sbjct: 7 GVVKWFDDSKGYGFISQE----QGPDVFVHFRAIRGEGFRTLREGQRVEFDIVEGPKG-- 60
Query: 65 YSAENL 70
A ++
Sbjct: 61 LQASDV 66
>gi|126641275|ref|YP_001084259.1| cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|169796561|ref|YP_001714354.1| cold shock-like protein [Acinetobacter baumannii AYE]
gi|184157530|ref|YP_001845869.1| cold shock protein [Acinetobacter baumannii ACICU]
gi|213156325|ref|YP_002318745.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
AB0057]
gi|215484022|ref|YP_002326247.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB307-0294]
gi|239503700|ref|ZP_04663010.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB900]
gi|260558025|ref|ZP_05830237.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
gi|332854616|ref|ZP_08435438.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
gi|332867722|ref|ZP_08437811.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
gi|332875420|ref|ZP_08443246.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059]
gi|126387159|gb|ABO11657.1| Cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|169149488|emb|CAM87376.1| cold shock-like protein [Acinetobacter baumannii AYE]
gi|183209124|gb|ACC56522.1| Cold shock protein [Acinetobacter baumannii ACICU]
gi|213055485|gb|ACJ40387.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
AB0057]
gi|213988970|gb|ACJ59269.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB307-0294]
gi|260408535|gb|EEX01841.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
gi|322507844|gb|ADX03298.1| Cold shock protein [Acinetobacter baumannii 1656-2]
gi|323517444|gb|ADX91825.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715]
gi|332727900|gb|EGJ59299.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
gi|332733806|gb|EGJ64957.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
gi|332736356|gb|EGJ67357.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059]
Length = 71
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + G DVF H S + + G L EGQ V + Q
Sbjct: 4 TTGTVKWFNETKGFGFIQTD----EGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG 59
Query: 63 GKYSAENLKLVPKS 76
A N+ +V +
Sbjct: 60 --PQASNITIVTNA 71
>gi|152997623|ref|YP_001342458.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150838547|gb|ABR72523.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT + G DVF+H SA+ ++G L EGQ V + Q
Sbjct: 6 TGTVKFFNETKGFGFITQD----QGPDVFVHFSAINTSGFKTLAEGQKVEFQVAQGKKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -PEAQNVTPL 69
>gi|109900083|ref|YP_663338.1| cold-shock DNA-binding domain-containing protein
[Pseudoalteromonas atlantica T6c]
gi|109702364|gb|ABG42284.1| cold-shock DNA-binding protein family [Pseudoalteromonas
atlantica T6c]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N DKG+GFI E SG DVF H SA+ S G L EGQ V + Q
Sbjct: 5 TTGSVKWFNEDKGFGFIEQE----SGPDVFAHFSAIVSEGFKTLAEGQRVEFTVTQGQKG 60
Query: 63 GKYSAENL 70
AEN+
Sbjct: 61 --PQAENI 66
>gi|120611988|ref|YP_971666.1| cold-shock DNA-binding protein family protein [Acidovorax
citrulli AAC00-1]
gi|120590452|gb|ABM33892.1| cold-shock DNA-binding protein family [Acidovorax citrulli
AAC00-1]
Length = 70
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI P+ G D+F H + G L E Q V ++ Q
Sbjct: 4 QTGIVKWFNEGKGFGFIAPDD---GGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKG 60
Query: 63 GKYSAENLKLVP 74
A N+++V
Sbjct: 61 --PQASNIRVVS 70
>gi|116748887|ref|YP_845574.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697951|gb|ABK17139.1| cold-shock DNA-binding protein family [Syntrophobacter
fumaroxidans MPOB]
Length = 66
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E G DVF+H SA+ G +L EG V++ Q
Sbjct: 1 MAEGRVKWFNDSKGFGFIERE----GGSDVFVHYSAIEGEGFKSLAEGDRVSFVAEQGAK 56
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 57 G--PQAAQVRKL 66
>gi|302519359|ref|ZP_07271701.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
gi|318056421|ref|ZP_07975144.1| cold-shock protein [Streptomyces sp. SA3_actG]
gi|318077529|ref|ZP_07984861.1| cold-shock protein [Streptomyces sp. SA3_actF]
gi|302428254|gb|EFL00070.1| cold shock domain-containing protein CspD [Streptomyces sp.
SPB78]
Length = 67
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V +D Q
Sbjct: 1 MSSGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNISAQGFRELLEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|257469649|ref|ZP_05633741.1| cold-shock domain-contain protein [Fusobacterium ulcerans ATCC
49185]
gi|317063885|ref|ZP_07928370.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
ulcerans ATCC 49185]
gi|313689561|gb|EFS26396.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
ulcerans ATCC 49185]
Length = 66
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI+ E G+D F+H S + S G +L EGQ VT++ + +
Sbjct: 1 MLKGTVKWFNKDKGFGFISGED----GNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGNK 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--PVASNVTV 65
>gi|320540284|ref|ZP_08039936.1| putative stress protein, member of the CspA-family [Serratia
symbiotica str. Tucson]
gi|320029604|gb|EFW11631.1| putative stress protein, member of the CspA-family [Serratia
symbiotica str. Tucson]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAVNV 66
>gi|238919761|ref|YP_002933276.1| hypothetical protein NT01EI_1865 [Edwardsiella ictaluri 93-146]
gi|238869330|gb|ACR69041.1| conserved domain protein [Edwardsiella ictaluri 93-146]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP DVF+H SA+ S G L EGQ V + Q+
Sbjct: 4 KNGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQSDGFKTLAEGQQVEFSI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A+ + L
Sbjct: 60 GPAAADVIAL 69
>gi|254514015|ref|ZP_05126076.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR5-3]
gi|219676258|gb|EED32623.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR5-3]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q
Sbjct: 6 TGTVKWFNESKGFGFIE----QKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60
Query: 64 KYSAENLKLV 73
AEN+ V
Sbjct: 61 -PQAENIVAV 69
>gi|325923004|ref|ZP_08184708.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
19865]
gi|325546512|gb|EGD17662.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
19865]
Length = 69
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADQVQAV 69
>gi|294637324|ref|ZP_06715621.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|291089507|gb|EFE22068.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
Length = 71
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGSVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSNEFRTLDEGQKVEFSVENGPKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAI 70
>gi|90021439|ref|YP_527266.1| cold-shock DNA-binding protein family protein [Saccharophagus
degradans 2-40]
gi|89951039|gb|ABD81054.1| cold-shock DNA-binding protein family [Saccharophagus degradans
2-40]
Length = 75
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+G++KW+N +GYGFIT + GDD+F+H ++ G +L EGQ V + Q D
Sbjct: 4 RTKGTVKWFNNARGYGFITAGATEEKEGDDIFVHYRSIRGEGYKSLNEGQAVEFSLQQGD 63
Query: 61 ANGKYSAENLKLV 73
+ A+++ L+
Sbjct: 64 KG--FHADDVALI 74
>gi|310659567|ref|YP_003937288.1| DNA-binding transcriptional repressor [Clostridium sticklandii
DSM 519]
gi|308826345|emb|CBH22383.1| DNA-binding transcriptional repressor [Clostridium sticklandii]
Length = 65
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ Q +
Sbjct: 3 GKVKWFNAEKGFGFIERED----GDDVFVHFSAIQGDGFKTLEEGQTVEFEITQGNRG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQASNV 62
>gi|260768242|ref|ZP_05877176.1| cold shock protein [Vibrio furnissii CIP 102972]
gi|260616272|gb|EEX41457.1| cold shock protein [Vibrio furnissii CIP 102972]
gi|315179943|gb|ADT86857.1| Cold shock protein [Vibrio furnissii NCTC 11218]
Length = 70
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFIT + G+DVF+H +++ S G L EGQ V++D Q
Sbjct: 6 TGSVKWFNETKGFGFITQDN---GGNDVFVHFASIVSEGFKTLAEGQRVSFDVEQGKKG- 61
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 62 -PQAANVVAL 70
>gi|255640679|gb|ACU20624.1| unknown [Glycine max]
Length = 170
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITP+ DD+F+H +++ S G +L+EGQ V + D +G
Sbjct: 8 TGMVKWFNSQKGFGFITPQD---GTDDLFVHFTSIRSDGYRSLSEGQSVEFLLDYGD-DG 63
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 64 RTMAVDVT 71
>gi|229823948|ref|ZP_04450017.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC
51271]
gi|229786302|gb|EEP22416.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC
51271]
Length = 90
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFI + G DVF+H S + + G L EGQ V+YD +
Sbjct: 25 MLNGTVKFFNVDKGFGFIA----GQDGVDVFVHFSNIQADGFKTLNEGQTVSYDVQETSR 80
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 81 G--LQAINVVAI 90
>gi|222056887|ref|YP_002539249.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
gi|221566176|gb|ACM22148.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
Length = 66
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI + G+DVF+H SA+ G +LTEG+ VT++ +
Sbjct: 1 MANGTVKWFNDSKGFGFIEQDN----GEDVFVHFSAIMGDGFKSLTEGEAVTFEVQKGPK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|108803028|ref|YP_642965.1| cold-shock DNA-binding protein family protein [Rubrobacter
xylanophilus DSM 9941]
gi|108764271|gb|ABG03153.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
DSM 9941]
Length = 67
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ +KGYGFI+P+ +D+F+H + + G L EG V+Y+ +
Sbjct: 1 MAQGTVKWFSDEKGYGFISPDD---GSEDLFVHYTGIEGTGFKTLEEGARVSYETTRGRK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--MQAVKVSRI 67
>gi|317492161|ref|ZP_07950591.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919866|gb|EFV41195.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP DVF+H SA+ S G L EGQ V + +Q+
Sbjct: 4 KTGHVKWFNESKGFGFITPAD---GSKDVFVHFSAIKSDGFKTLAEGQQVEF-AIQDSPR 59
Query: 63 GKYSAENLKL 72
G +A+ + L
Sbjct: 60 GPSAADVIAL 69
>gi|296113319|ref|YP_003627257.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4]
gi|295921013|gb|ADG61364.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4]
Length = 91
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +KW+N KG+GFI E +G+DVF+H A+ G +L EGQ V + D
Sbjct: 27 EQGVVKWFNDAKGFGFIQRE----TGEDVFVHFRAIQGEGYRSLKEGQAVEFVVTTGDKG 82
Query: 63 GKYSAENLKLV 73
AE + +
Sbjct: 83 --LQAEEVTKL 91
>gi|262372757|ref|ZP_06066036.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262312782|gb|EEY93867.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 72
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + SG DVF H S + S G L EGQ V++ Q
Sbjct: 5 ATGTVKWFNETKGFGFIHAD----SGQDVFAHFSEIQSNGFKVLHEGQRVSFTVAQGKKG 60
Query: 63 GKYSAENLKLVPK 75
A + +V +
Sbjct: 61 --PQATGITVVAQ 71
>gi|227872733|ref|ZP_03991058.1| cold shock protein CspA [Oribacterium sinus F0268]
gi|227841428|gb|EEJ51733.1| cold shock protein CspA [Oribacterium sinus F0268]
Length = 65
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E +G DVF+H S ++ G +L EGQ V ++ V
Sbjct: 2 KGTVKWFNNQKGYGFISDE----TGKDVFVHYSGLSGDGFKSLEEGQAVEFEVVDGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVVKL 65
>gi|317491463|ref|ZP_07949899.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316921010|gb|EFV42333.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+AS G L EGQ V Y Q+
Sbjct: 4 KTGQVKWFNESKGFGFIEQHD---GGKDVFVHFSAIASEGFKTLAEGQRVEYTI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 60 GPAAANVVAL 69
>gi|315500325|ref|YP_004089128.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
gi|315418337|gb|ADU14977.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
Length = 67
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+NP+KG+GFI P+ G+DVF+H SA+ AG L EGQ + Y+ +
Sbjct: 1 MAVGIVKWFNPNKGFGFIQPDD---GGNDVFVHISAIERAGWRMLVEGQKIAYEVQSD-- 55
Query: 62 NGKYSAENLK 71
GK +A NL+
Sbjct: 56 RGKAAAVNLQ 65
>gi|240948086|ref|ZP_04752496.1| cold shock-like protein CspC [Actinobacillus minor NM305]
gi|257465091|ref|ZP_05629462.1| cold shock-like protein CspC [Actinobacillus minor 202]
gi|240297566|gb|EER48058.1| cold shock-like protein CspC [Actinobacillus minor NM305]
gi|257450751|gb|EEV24794.1| cold shock-like protein CspC [Actinobacillus minor 202]
Length = 70
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI P+ + G+D+F+H SA+ S G L EG V ++ +D
Sbjct: 5 TGTVKWFNATKGFGFIAPD---QGGEDIFVHFSAIESNGGYRTLEEGAKVEFEVQASDRG 61
Query: 63 GKYSAENLKLV 73
SA N+K +
Sbjct: 62 --ASAANVKKI 70
>gi|59713168|ref|YP_205944.1| cold shock protein [Vibrio fischeri ES114]
gi|197334115|ref|YP_002157348.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11]
gi|59481269|gb|AAW87056.1| cold shock protein [Vibrio fischeri ES114]
gi|197315605|gb|ACH65052.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KG+GFIT + G DVF+H A+A+ G L EGQ VT+ Q
Sbjct: 5 TGIVKWFNEEKGFGFITQDN---GGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQKG- 60
Query: 64 KYSAENLKL 72
A ++
Sbjct: 61 -PQAADVTP 68
>gi|322433205|ref|YP_004210426.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321165597|gb|ADW71299.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N KGYGF+ E DVF+H S + G +L EG VT+D +Q +
Sbjct: 1 MYKGTVKWFNNAKGYGFLGRE----GDPDVFVHYSPIQIDGYKSLEEGDAVTFDIIQGET 56
Query: 62 NGKYSAENLK 71
G+ A+ +
Sbjct: 57 -GRPQADRVS 65
>gi|293375456|ref|ZP_06621737.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
PC909]
gi|325836869|ref|ZP_08166275.1| cold shock-like protein CspG [Turicibacter sp. HGF1]
gi|292646009|gb|EFF64038.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
PC909]
gi|325491115|gb|EGC93406.1| cold shock-like protein CspG [Turicibacter sp. HGF1]
Length = 66
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF+H SA+ + G L EGQ VT++ +
Sbjct: 2 KGTVKWFNEEKGFGFITAEN----GSDVFVHFSAIKADGFKRLEEGQKVTFETAEGQRG- 56
Query: 64 KYSAENLKL 72
A+N+ +
Sbjct: 57 -LQAQNVVV 64
>gi|157364239|ref|YP_001471006.1| cold-shock DNA-binding domain-containing protein [Thermotoga
lettingae TMO]
gi|157314843|gb|ABV33942.1| putative cold-shock DNA-binding domain protein [Thermotoga
lettingae TMO]
Length = 66
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++P KGYGFIT + G DVF+H SA+ G L EGQ V ++
Sbjct: 2 KGTVKWFDPKKGYGFIT----KQEGGDVFVHWSALEMDGFKTLKEGQEVEFEIQDGPKG- 56
Query: 64 KYSAENLKLV 73
A ++K+V
Sbjct: 57 -PQAAHVKVV 65
>gi|104783408|ref|YP_609906.1| cold shock protein [Pseudomonas entomophila L48]
gi|95112395|emb|CAK17122.1| cold shock protein [Pseudomonas entomophila L48]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENL 70
A+ +
Sbjct: 60 G--MQADEV 66
>gi|238749763|ref|ZP_04611268.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
gi|238712418|gb|EEQ04631.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y +
Sbjct: 4 KTGQVKWFNEAKGFGFIEQHD---GGKDVFVHFSAIATDGFKTLAEGQRVEYTIQDSPRG 60
Query: 63 GKYSAENL 70
+A N+
Sbjct: 61 --PAAANV 66
>gi|229828454|ref|ZP_04454523.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles
DSM 14600]
gi|229793048|gb|EEP29162.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles
DSM 14600]
Length = 67
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ KGYGFI+ E G DVF+H S + G L EG V ++ +D
Sbjct: 1 MAKGTVKWFDDRKGYGFISDEA----GKDVFVHFSKLNMEGFKTLKEGATVDFEVEDSDK 56
Query: 62 NGKYSAENLKLVP 74
A ++ +V
Sbjct: 57 G--PQAIDVTVVE 67
>gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|226187239|dbj|BAH35343.1| probable cold shock protein [Rhodococcus erythropolis PR4]
Length = 137
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASAL-PEGVEGLKAGQRVEFGMAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LK++ + +
Sbjct: 56 G--PQALSLKVLEPAPS 70
>gi|13472374|ref|NP_103941.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14023120|dbj|BAB49727.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
Length = 68
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+YN KG+GFI P G DVF+H SA+ AG L EGQ + +D ++
Sbjct: 1 MTTGIVKFYNGQKGFGFIQPAD---GGKDVFVHVSALERAGFPGLAEGQKLQFDLERDGK 57
Query: 62 NGKYSAENLKLV 73
G+ SA NL+L+
Sbjct: 58 -GRESAANLQLI 68
>gi|310287193|ref|YP_003938451.1| Cold shock protein [Bifidobacterium bifidum S17]
gi|313139892|ref|ZP_07802085.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
bifidum NCIMB 41171]
gi|309251129|gb|ADO52877.1| Cold shock protein [Bifidobacterium bifidum S17]
gi|313132402|gb|EFR50019.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
bifidum NCIMB 41171]
Length = 89
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K+++ KGYGFIT + GDDVF+H S + + G L EG V Y+ +
Sbjct: 23 MAQGTVKFFSAGKGYGFITSD---AGGDDVFVHYSVIQADGFKTLNEGDKVEYEAERGPK 79
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 80 G--MQATKVVKL 89
>gi|257878221|ref|ZP_05657874.1| cold-shock domain-contain protein [Enterococcus faecium
1,230,933]
gi|257880999|ref|ZP_05660652.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,502]
gi|257884656|ref|ZP_05664309.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,501]
gi|257889581|ref|ZP_05669234.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,410]
gi|257892479|ref|ZP_05672132.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,408]
gi|258616270|ref|ZP_05714040.1| cold-shock domain-contain protein [Enterococcus faecium DO]
gi|260559265|ref|ZP_05831451.1| cold-shock domain-containing protein [Enterococcus faecium C68]
gi|261207798|ref|ZP_05922483.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
gi|257812449|gb|EEV41207.1| cold-shock domain-contain protein [Enterococcus faecium
1,230,933]
gi|257816657|gb|EEV43985.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,502]
gi|257820494|gb|EEV47642.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,501]
gi|257825941|gb|EEV52567.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,410]
gi|257828858|gb|EEV55465.1| cold-shock domain-contain protein [Enterococcus faecium
1,231,408]
gi|260075022|gb|EEW63338.1| cold-shock domain-containing protein [Enterococcus faecium C68]
gi|260078181|gb|EEW65887.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
Length = 77
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KGYGFI+ + + +++F+H +A+ G L E Q+V ++ ++ +
Sbjct: 1 MTTGIVKWFDNKKGYGFISYDDT----EEIFVHFTAIEEEGFKTLEENQVVEFEIIEGNR 56
Query: 62 NGKYSAENLKL 72
A ++K
Sbjct: 57 G--TQAAHVKK 65
>gi|237738393|ref|ZP_04568874.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
mortiferum ATCC 9817]
gi|229420273|gb|EEO35320.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
mortiferum ATCC 9817]
Length = 66
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI+ E G+D F+H S + + G +L EGQ V+++ +
Sbjct: 1 MLKGTVKWFNKDKGFGFISGED----GNDYFVHYSNINAKGFRSLEEGQAVSFEVTEGAK 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--PVASNVTV 65
>gi|171058345|ref|YP_001790694.1| cold-shock DNA-binding domain-containing protein [Leptothrix
cholodnii SP-6]
gi|170775790|gb|ACB33929.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6]
Length = 79
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW+N KG+GFI PE E G+DVF H SA+ G L +G V +D V
Sbjct: 1 MPRGIVKWFNDVKGFGFIEPE---EGGEDVFAHFSAIQMEGFRTLKQGSSVDFDLVDGPK 57
Query: 62 NGKYSAENLKL-------VPKSSN 78
A+N++ VP S +
Sbjct: 58 GKL--AQNIRANQIAAGEVPASPS 79
>gi|148263031|ref|YP_001229737.1| cold-shock DNA-binding domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146396531|gb|ABQ25164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
Rf4]
Length = 68
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GF+ E G+DVF+H SA+ G +L EG VT++ +
Sbjct: 3 MEKGKVKWFNDSKGFGFLEQEN----GEDVFVHFSAITGDGFKSLNEGDNVTFEVTKGPK 58
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 59 G--LQAANVTRV 68
>gi|226953337|ref|ZP_03823801.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|294651960|ref|ZP_06729249.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
gi|226835963|gb|EEH68346.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|292822192|gb|EFF81106.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI +SG DVF H S +A++G L EGQ V++ Q
Sbjct: 6 TGTVKWFNETKGFGFIQ----QQSGPDVFAHFSEIANSGFKTLYEGQQVSFSVAQGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PNAVNIVPL 69
>gi|26989186|ref|NP_744611.1| cold shock protein CspA [Pseudomonas putida KT2440]
gi|148548435|ref|YP_001268537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida F1]
gi|325276815|ref|ZP_08142516.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
gi|24984025|gb|AAN68075.1|AE016439_10 cold shock protein CspA [Pseudomonas putida KT2440]
gi|63034352|gb|AAY28469.1| cold shock protein A-2 [Pseudomonas putida]
gi|148512493|gb|ABQ79353.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
gi|313499448|gb|ADR60814.1| Cold shock protein capa, fragment-related protein [Pseudomonas
putida BIRD-1]
gi|324098053|gb|EGB96198.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 70
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAERGQK 60
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 61 G--MQAAQVRP 69
>gi|163857153|ref|YP_001631451.1| cold shock-like protein [Bordetella petrii DSM 12804]
gi|163260881|emb|CAP43183.1| cold shock-like protein [Bordetella petrii]
Length = 67
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N DKG+GFI PE G D+F H S + S G +L E Q V+Y Q
Sbjct: 1 METGIVKWFNADKGFGFIMPEN---GGKDLFAHFSGIESEGYKSLEENQRVSYVQTQGAK 57
Query: 62 NGKYSAENLKLV 73
A ++++
Sbjct: 58 G--PQATKIRVL 67
>gi|21243129|ref|NP_642711.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
306]
gi|78048148|ref|YP_364323.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325928087|ref|ZP_08189300.1| cold-shock DNA-binding protein family [Xanthomonas perforans
91-118]
gi|21108648|gb|AAM37247.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
306]
gi|78036578|emb|CAJ24269.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325541585|gb|EGD13114.1| cold-shock DNA-binding protein family [Xanthomonas perforans
91-118]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADQVQAV 69
>gi|310829592|ref|YP_003961949.1| cold shock protein [Eubacterium limosum KIST612]
gi|308741326|gb|ADO38986.1| cold shock protein [Eubacterium limosum KIST612]
Length = 66
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFI+ E GDDVF H S++ G L +G VT+D Q
Sbjct: 1 MNNGTVKWFNGDKGFGFISRED----GDDVFEHFSSIVGDGFKTLNDGDRVTFDTEQGPR 56
Query: 62 NGKYSAENL 70
A+N+
Sbjct: 57 G--LQAKNV 63
>gi|194292705|ref|YP_002008612.1| cold shock protein, transcription antiterminator [Cupriavidus
taiwanensis LMG 19424]
gi|193226609|emb|CAQ72560.1| cold shock protein, transcription antiterminator [Cupriavidus
taiwanensis LMG 19424]
Length = 67
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ +G +L EGQ V Y
Sbjct: 1 METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGSGFKSLKEGQKVRYVKAMGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--EQATKIQAL 67
>gi|294635687|ref|ZP_06714158.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|291090958|gb|EFE23519.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
Length = 71
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI+P DVF+H SA+ S L EGQ V + +
Sbjct: 6 TGSVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSNEFRTLDEGQKVEFSVENSPKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAI 70
>gi|260775771|ref|ZP_05884667.1| putative cold-shock DNA-binding domain protein [Vibrio
coralliilyticus ATCC BAA-450]
gi|260608187|gb|EEX34356.1| putative cold-shock DNA-binding domain protein [Vibrio
coralliilyticus ATCC BAA-450]
Length = 70
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI P+ DVF+H ++AS G L EGQ V ++ Q
Sbjct: 5 TTGSVKWFNETKGFGFIAPDN---GTADVFVHFRSIASDGFKTLAEGQKVAFNVEQGGKG 61
Query: 63 GKYSAENLKLV 73
A ++ ++
Sbjct: 62 --PQAADVTVL 70
>gi|209972096|gb|ACJ03559.1| cold shock protein [Bacillus weihenstephanensis]
Length = 67
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MTVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIENDGFKSLEEGQKVSFEIEDGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|119945819|ref|YP_943499.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864423|gb|ABM03900.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q
Sbjct: 6 QGTVKWFNEAKGFGFIE----QASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -PQADNIVAL 69
>gi|120554260|ref|YP_958611.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120324109|gb|ABM18424.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
VT8]
Length = 68
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT E G DVF+H SA+ G L EGQ V + Q
Sbjct: 5 TGTVKFFNESKGFGFITRE----GGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 59
Query: 64 KYSAENL 70
AEN+
Sbjct: 60 -PQAENV 65
>gi|270261198|ref|ZP_06189471.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13]
gi|270044682|gb|EFA17773.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13]
Length = 69
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y Q+
Sbjct: 4 KTGQVKWFNESKGFGFIEQND---GGKDVFVHFSAIATDGFKTLAEGQRVEYSI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 60 GPAAANVVAL 69
>gi|311743491|ref|ZP_07717297.1| cold-shock domain family protein [Aeromicrobium marinum DSM
15272]
gi|311312621|gb|EFQ82532.1| cold-shock domain family protein [Aeromicrobium marinum DSM
15272]
Length = 131
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KG+GF++ + G DV+LH A+ G+ + G V + Q
Sbjct: 1 MPTGKVKWFDAGKGFGFLSSD----EGPDVYLHADAL-PEGMDTIKPGTRVEFGIAQGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++L +++
Sbjct: 56 GD--QALQVRLAEPATS 70
>gi|224000015|ref|XP_002289680.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
gi|220974888|gb|EED93217.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
Length = 136
Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GF+ P+ +VF+H SA+ + G +L +G++V ++ +Q + NG
Sbjct: 43 KGTVKWFDAKKGFGFLVPDD---GSAEVFVHHSAIHANGFRSLGDGEVVEFEVMQ-EPNG 98
Query: 64 KYSAENLK 71
K+ A N+
Sbjct: 99 KWKALNVT 106
>gi|326795949|ref|YP_004313769.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
gi|326546713|gb|ADZ91933.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
Length = 69
Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H SA+ +G L EGQ V + Q
Sbjct: 5 TTGTVKWFNESKGFGFIEQE----SGPDVFAHFSAITGSGFKTLAEGQKVEFTVGQGPKG 60
Query: 63 GKYSAENLKLV 73
AE++ +
Sbjct: 61 --PQAEDIVAL 69
>gi|85058123|ref|YP_453825.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
gi|84778643|dbj|BAE73420.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
Length = 70
Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V + Q
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQRVEFTIEQGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAANVVAL 70
>gi|50084936|ref|YP_046446.1| cold shock-like protein [Acinetobacter sp. ADP1]
gi|49530912|emb|CAG68624.1| cold shock-like protein [Acinetobacter sp. ADP1]
Length = 70
Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI+ + SG+DVF H S ++++G L EGQ V + V
Sbjct: 6 QGTVKWFNETKGFGFISSD----SGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG- 60
Query: 64 KYSAENLKLVP 74
A N+ +V
Sbjct: 61 -LQASNISIVK 70
>gi|149376382|ref|ZP_01894145.1| Cold shock protein [Marinobacter algicola DG893]
gi|149359396|gb|EDM47857.1| Cold shock protein [Marinobacter algicola DG893]
Length = 131
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG +KW+N KGYGFI EG + DD+F H S+V G L GQ VT+D +D
Sbjct: 24 IMPRGKVKWFNNAKGYGFIIEEGCS---DDLFAHFSSVQMEGYKTLKAGQAVTFDKKPSD 80
Query: 61 ANGKYSAENLKLVPK 75
A N+ +
Sbjct: 81 KG--IHAVNIVPEEQ 93
>gi|47567592|ref|ZP_00238303.1| hypothetical protein BCE_G9241_1119 [Bacillus cereus G9241]
gi|52144195|ref|YP_082633.1| cold shock protein [Bacillus cereus E33L]
gi|206968178|ref|ZP_03229134.1| cold shock protein CspA [Bacillus cereus AH1134]
gi|206976513|ref|ZP_03237419.1| cold shock protein CspA [Bacillus cereus H3081.97]
gi|217958711|ref|YP_002337259.1| cold shock protein CspA [Bacillus cereus AH187]
gi|218235518|ref|YP_002365918.1| cold shock protein CspA [Bacillus cereus B4264]
gi|218896171|ref|YP_002444582.1| cold shock protein CspA [Bacillus cereus G9842]
gi|222094856|ref|YP_002528916.1| cold shock protein [Bacillus cereus Q1]
gi|225863086|ref|YP_002748464.1| cold shock protein CspA [Bacillus cereus 03BB102]
gi|228899812|ref|ZP_04064058.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
gi|228951597|ref|ZP_04113701.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228964179|ref|ZP_04125302.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
sotto str. T04001]
gi|229068787|ref|ZP_04202083.1| Cold shock-like protein cspB [Bacillus cereus F65185]
gi|229078421|ref|ZP_04210982.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
gi|229108691|ref|ZP_04238301.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
gi|229137920|ref|ZP_04266519.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
gi|229154797|ref|ZP_04282912.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
gi|229177647|ref|ZP_04305024.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
gi|229189322|ref|ZP_04316342.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
gi|47555787|gb|EAL14127.1| unknown [Bacillus cereus G9241]
gi|51977664|gb|AAU19214.1| cold shock protein [Bacillus cereus E33L]
gi|206737098|gb|EDZ54245.1| cold shock protein CspA [Bacillus cereus AH1134]
gi|206745196|gb|EDZ56597.1| cold shock protein CspA [Bacillus cereus H3081.97]
gi|209972080|gb|ACJ03551.1| cold shock protein [Bacillus thuringiensis serovar kurstaki]
gi|209972086|gb|ACJ03554.1| cold shock protein [Bacillus thuringiensis serovar israelensis]
gi|209972090|gb|ACJ03556.1| cold shock protein [Bacillus thuringiensis serovar alesti]
gi|209972094|gb|ACJ03558.1| cold shock protein [Bacillus mycoides]
gi|210077341|gb|ACJ06957.1| cold shock protein [Bacillus thuringiensis serovar asturiensis]
gi|217067961|gb|ACJ82211.1| cold shock protein CspA [Bacillus cereus AH187]
gi|218163475|gb|ACK63467.1| cold shock protein CspA [Bacillus cereus B4264]
gi|218545113|gb|ACK97507.1| cold shock protein CspA [Bacillus cereus G9842]
gi|221238914|gb|ACM11624.1| cold shock protein [Bacillus cereus Q1]
gi|225786180|gb|ACO26397.1| cold shock protein CspA [Bacillus cereus 03BB102]
gi|228594116|gb|EEK51915.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
gi|228605837|gb|EEK63281.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
gi|228628745|gb|EEK85457.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
gi|228645577|gb|EEL01810.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
gi|228674721|gb|EEL29955.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
gi|228704843|gb|EEL57268.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
gi|228714295|gb|EEL66174.1| Cold shock-like protein cspB [Bacillus cereus F65185]
gi|228795529|gb|EEM43013.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228808058|gb|EEM54573.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228859831|gb|EEN04245.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETDGFKSLEEGQKVSFEIEDGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|291246380|ref|YP_003505766.1| putative cold-shock protein C [Staphylococcus simulans bv.
staphylolyticus]
gi|290463911|gb|ADD24898.1| putative cold-shock protein C [Staphylococcus simulans bv.
staphylolyticus]
Length = 66
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G+DVF+H S +A G +L EGQ V +D + D
Sbjct: 1 MNNGTVKWFNSEKGFGFIEREN----GNDVFVHFSGIAGEGYKSLEEGQNVDFDIIDGDR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQATNV 63
>gi|88859394|ref|ZP_01134034.1| Cold shock protein [Pseudoalteromonas tunicata D2]
gi|88818411|gb|EAR28226.1| Cold shock protein [Pseudoalteromonas tunicata D2]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI SG DVF H SA++ G L EGQ V + +
Sbjct: 5 TTGTVKWFNEAKGFGFIE----QASGPDVFAHFSAISGDGFKTLAEGQKVQFVVTKGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ ++
Sbjct: 61 --PQAENIVVL 69
>gi|71278403|ref|YP_271177.1| cold shock DNA-binding domain-containing protein [Colwellia
psychrerythraea 34H]
gi|71144143|gb|AAZ24616.1| cold-shock DNA-binding domain family protein [Colwellia
psychrerythraea 34H]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H +A+ G L EGQ V +
Sbjct: 4 TTGTVKWFNEAKGFGFIEQEN----GPDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 60 --PQAENIVAL 68
>gi|42780794|ref|NP_978041.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
gi|47566079|ref|ZP_00237117.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|52143761|ref|YP_083069.1| cold shock protein [Bacillus cereus E33L]
gi|206974820|ref|ZP_03235735.1| cold shock protein CspB [Bacillus cereus H3081.97]
gi|217959179|ref|YP_002337727.1| cold shock protein CspB [Bacillus cereus AH187]
gi|222095321|ref|YP_002529381.1| cold shock protein [Bacillus cereus Q1]
gi|228984782|ref|ZP_04144954.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090659|ref|ZP_04221892.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
gi|229138395|ref|ZP_04266986.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
gi|229155270|ref|ZP_04283381.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
gi|229195910|ref|ZP_04322664.1| Cold shock-like protein cspB [Bacillus cereus m1293]
gi|300117378|ref|ZP_07055168.1| cold shock protein CspB [Bacillus cereus SJ1]
gi|42736714|gb|AAS40649.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
gi|47556996|gb|EAL15326.1| cold shock protein-related protein [Bacillus cereus G9241]
gi|51977230|gb|AAU18780.1| cold shock protein [Bacillus cereus E33L]
gi|206746839|gb|EDZ58231.1| cold shock protein CspB [Bacillus cereus H3081.97]
gi|217064802|gb|ACJ79052.1| cold shock protein CspB [Bacillus cereus AH187]
gi|221239379|gb|ACM12089.1| cold shock protein [Bacillus cereus Q1]
gi|228587552|gb|EEK45616.1| Cold shock-like protein cspB [Bacillus cereus m1293]
gi|228628195|gb|EEK84911.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
gi|228645066|gb|EEL01307.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
gi|228692601|gb|EEL46327.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
gi|228774980|gb|EEM23374.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|298725213|gb|EFI65865.1| cold shock protein CspB [Bacillus cereus SJ1]
gi|324325719|gb|ADY20979.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 65
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEIE----GADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|254477809|ref|ZP_05091195.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
R11]
gi|214032052|gb|EEB72887.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
R11]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG G DVF+H S V +GL L + Q V ++ ++
Sbjct: 1 MANGTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVEFEMIEG-R 56
Query: 62 NGKYSAENLKL 72
+G+ A ++
Sbjct: 57 DGRQMASEIRP 67
>gi|212709456|ref|ZP_03317584.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
DSM 30120]
gi|261344215|ref|ZP_05971859.1| conserved domain protein [Providencia rustigianii DSM 4541]
gi|212687794|gb|EEB47322.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
DSM 30120]
gi|282567812|gb|EFB73347.1| conserved domain protein [Providencia rustigianii DSM 4541]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 6 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQQVEFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAI 70
>gi|146309868|ref|YP_001174942.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
638]
gi|145316744|gb|ABP58891.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S+ L EGQ V +
Sbjct: 6 TGLVKWFNPEKGFGFITPQD---GSKDVFVHFSAIQSSDFKTLDEGQKVEFSIENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|71725897|gb|AAZ39067.1| cold shock protein [Exiguobacterium aurantiacum]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G DVF+H SA+ + G +L EGQ V ++ V +
Sbjct: 4 GIVKWFNLEKGFGFIEVE----GGKDVFVHFSAIQTDGYKSLDEGQEVEFEIVDGERG-- 57
Query: 65 YSAENLK 71
A N+
Sbjct: 58 PQAANVT 64
>gi|114321683|ref|YP_743366.1| cold-shock DNA-binding protein family protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114228077|gb|ABI57876.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii
MLHE-1]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW++ KG+GFI E G+DVF+H A+ G +L EGQ V ++ V+
Sbjct: 4 RETGTVKWFDNAKGFGFIQRE----QGEDVFVHFRAIRGEGFRSLDEGQQVEFNVVRGPK 59
Query: 62 NGKYSAENLKLV 73
AE++ V
Sbjct: 60 G--LQAEDVAAV 69
>gi|312137854|ref|YP_004005190.1| cold shock protein [Rhodococcus equi 103S]
gi|325676045|ref|ZP_08155727.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
gi|311887193|emb|CBH46502.1| cold shock protein [Rhodococcus equi 103S]
gi|325553085|gb|EGD22765.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P D+F+H S + S G +L E Q V ++ Q
Sbjct: 1 MAEGTVKWFNSEKGFGFIAPSD---GSADLFVHYSEIQSGGFRSLEENQHVRFEIGQGAK 57
Query: 62 NGKYSAENLKLV 73
A + ++
Sbjct: 58 G--PQATGITVI 67
>gi|119469734|ref|ZP_01612603.1| Cold shock protein [Alteromonadales bacterium TW-7]
gi|119446981|gb|EAW28252.1| Cold shock protein [Alteromonadales bacterium TW-7]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI E SG DVF H SA++ G L EGQ V + Q
Sbjct: 5 TTGSVKWFNEAKGFGFIEQE----SGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG 60
Query: 63 GKYSAENL 70
AEN+
Sbjct: 61 --PQAENI 66
>gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium leprae TN]
gi|221230630|ref|YP_002504046.1| putative cold shock protein [Mycobacterium leprae Br4923]
gi|2440094|emb|CAB16651.1| small cold-shock protein [Mycobacterium leprae]
gi|13093707|emb|CAC31102.1| probable cold shock protein [Mycobacterium leprae]
gi|219933737|emb|CAR72244.1| probable cold shock protein [Mycobacterium leprae Br4923]
Length = 136
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDADKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGVASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIDPPPS 70
>gi|313896973|ref|ZP_07830520.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320530494|ref|ZP_08031552.1| cold-shock DNA-binding domain protein [Selenomonas artemidis
F0399]
gi|312974420|gb|EFR39888.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320137327|gb|EFW29251.1| cold-shock DNA-binding domain protein [Selenomonas artemidis
F0399]
Length = 66
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ DKGYGFI+ + GDDVF+H S++ G L+EGQ V +D V+
Sbjct: 2 TGKVKWFSADKGYGFISRDD----GDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEGARG- 56
Query: 64 KYSAENL 70
A+N+
Sbjct: 57 -PQADNV 62
>gi|302392304|ref|YP_003828124.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302204381|gb|ADL13059.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 66
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KGYGFI DDVF+H SA+ G L EGQ V + V+ D
Sbjct: 1 MKTGTVKWFDGKKGYGFIEV----PGEDDVFVHFSAIEEEGFKTLEEGQEVQFKVVEGDK 56
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 57 G--PQAEEVTKI 66
>gi|167035306|ref|YP_001670537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida GB-1]
gi|170720314|ref|YP_001748002.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida W619]
gi|166861794|gb|ABZ00202.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
gi|169758317|gb|ACA71633.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITP +SGDD+F+H A+ + G L EGQ VT+ +
Sbjct: 4 RQNGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTFVATRGQK 59
Query: 62 NGKYSAENLKL 72
AE +++
Sbjct: 60 G--MQAEEVQI 68
>gi|30261699|ref|NP_844076.1| cold shock protein CspB [Bacillus anthracis str. Ames]
gi|47526914|ref|YP_018263.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
gi|49184527|ref|YP_027779.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
gi|49480968|ref|YP_035816.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|65318968|ref|ZP_00391927.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
gi|165869260|ref|ZP_02213919.1| cold shock protein CspB [Bacillus anthracis str. A0488]
gi|167633426|ref|ZP_02391751.1| cold shock protein CspB [Bacillus anthracis str. A0442]
gi|167639155|ref|ZP_02397428.1| cold shock protein CspB [Bacillus anthracis str. A0193]
gi|170686113|ref|ZP_02877335.1| cold shock protein CspB [Bacillus anthracis str. A0465]
gi|170706544|ref|ZP_02897004.1| cold shock protein CspB [Bacillus anthracis str. A0389]
gi|177650384|ref|ZP_02933351.1| cold shock protein CspB [Bacillus anthracis str. A0174]
gi|190566507|ref|ZP_03019425.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
gi|196033540|ref|ZP_03100952.1| cold shock protein CspB [Bacillus cereus W]
gi|196038892|ref|ZP_03106199.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
gi|196046644|ref|ZP_03113868.1| cold shock protein CspB [Bacillus cereus 03BB108]
gi|225863558|ref|YP_002748936.1| cold shock protein CspB [Bacillus cereus 03BB102]
gi|227815548|ref|YP_002815557.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
gi|228914278|ref|ZP_04077893.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228945302|ref|ZP_04107657.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229183890|ref|ZP_04311106.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
gi|229602706|ref|YP_002866103.1| cold shock protein CspB [Bacillus anthracis str. A0248]
gi|254683188|ref|ZP_05147049.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723778|ref|ZP_05185564.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
str. A1055]
gi|254734540|ref|ZP_05192252.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254740949|ref|ZP_05198637.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
str. Kruger B]
gi|254755191|ref|ZP_05207225.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
str. Vollum]
gi|254759728|ref|ZP_05211752.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
str. Australia 94]
gi|301053238|ref|YP_003791449.1| cold shock protein [Bacillus anthracis CI]
gi|30255927|gb|AAP25562.1| cold shock protein CspB [Bacillus anthracis str. Ames]
gi|47502062|gb|AAT30738.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
gi|49178454|gb|AAT53830.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
gi|49332524|gb|AAT63170.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|164714700|gb|EDR20218.1| cold shock protein CspB [Bacillus anthracis str. A0488]
gi|167512945|gb|EDR88318.1| cold shock protein CspB [Bacillus anthracis str. A0193]
gi|167531464|gb|EDR94142.1| cold shock protein CspB [Bacillus anthracis str. A0442]
gi|170128642|gb|EDS97509.1| cold shock protein CspB [Bacillus anthracis str. A0389]
gi|170669810|gb|EDT20551.1| cold shock protein CspB [Bacillus anthracis str. A0465]
gi|172083528|gb|EDT68588.1| cold shock protein CspB [Bacillus anthracis str. A0174]
gi|190562642|gb|EDV16609.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
gi|195993974|gb|EDX57930.1| cold shock protein CspB [Bacillus cereus W]
gi|196022577|gb|EDX61260.1| cold shock protein CspB [Bacillus cereus 03BB108]
gi|196030037|gb|EDX68637.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
gi|225786101|gb|ACO26318.1| cold shock protein CspB [Bacillus cereus 03BB102]
gi|227005644|gb|ACP15387.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
gi|228599542|gb|EEK57146.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
gi|228814274|gb|EEM60540.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228845272|gb|EEM90308.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229267114|gb|ACQ48751.1| cold shock protein CspB [Bacillus anthracis str. A0248]
gi|300375407|gb|ADK04311.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
Length = 65
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|262376304|ref|ZP_06069534.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
gi|262308905|gb|EEY90038.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
Length = 71
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + V+
Sbjct: 5 REQGVVKWFNDTKGFGFIQR----NGGDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQK 60
Query: 62 NGKYSAENLKLVP 74
+ AE ++ +
Sbjct: 61 G--FQAEEVQPLD 71
>gi|297588480|ref|ZP_06947123.1| CspA family cold shock transcriptional regulator [Finegoldia
magna ATCC 53516]
gi|297573853|gb|EFH92574.1| CspA family cold shock transcriptional regulator [Finegoldia
magna ATCC 53516]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ +G++KW+N KG+GFI+ E DVF+H +A+ G L E Q V +D
Sbjct: 1 MTKGTVKWFNATKGFGFISTED----HGDVFVHYTALEDNGEYRKLEENQEVEFDIADGP 56
Query: 61 ANGKYSAENLKLV 73
A N+K +
Sbjct: 57 RG--LQACNVKKL 67
>gi|254787663|ref|YP_003075092.1| cold shock DNA-binding domain-containing protein [Teredinibacter
turnerae T7901]
gi|237684629|gb|ACR11893.1| cold shock DNA-binding domain protein [Teredinibacter turnerae
T7901]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI S SG DVF H SA+ S+G LTEGQ V +
Sbjct: 6 TGTVKWFNESKGFGFI----SQPSGPDVFAHFSAIESSGFKTLTEGQQVEFTVTDGQKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -PQAQNIVAL 69
>gi|157369958|ref|YP_001477947.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|238753509|ref|ZP_04614872.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
gi|157321722|gb|ABV40819.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
gi|238708462|gb|EEQ00817.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y +
Sbjct: 4 KTGQVKWFNESKGFGFIEQND---GGKDVFVHFSAIATDGFKTLAEGQRVEYTVEDSPRG 60
Query: 63 GKYSAENLKLV 73
+A N+ +
Sbjct: 61 --PAAANVVAL 69
>gi|269468409|gb|EEZ80074.1| cold shock protein [uncultured SUP05 cluster bacterium]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW++ KG+GFI E SGDDVF+H A+ G +L EGQ V +D
Sbjct: 1 MSTTGKVKWFDAKKGFGFIEQE----SGDDVFVHFRAIQGDGYKSLEEGQEVVFDLEDGA 56
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 57 KG--PQAANV 64
>gi|163801267|ref|ZP_02195166.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
gi|159174756|gb|EDP59556.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFITP+ G D+F+H ++AS G LTEGQ V+++ Q +
Sbjct: 5 TTGSVKWFNESKGFGFITPDN---GGSDLFVHFKSIASEGFKTLTEGQKVSFNVEQGNKG 61
Query: 63 GKYSAENLKL 72
A N+
Sbjct: 62 --PQAGNVTP 69
>gi|266625124|ref|ZP_06118059.1| conserved domain protein [Clostridium hathewayi DSM 13479]
gi|288862975|gb|EFC95273.1| conserved domain protein [Clostridium hathewayi DSM 13479]
Length = 65
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V
Sbjct: 2 KGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLDEGASVEFDVVDGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAVNVTKL 65
>gi|171743331|ref|ZP_02919138.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC
27678]
gi|306823276|ref|ZP_07456652.1| cold-shock domain family protein [Bifidobacterium dentium ATCC
27679]
gi|309801917|ref|ZP_07696032.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium
JCVIHMP022]
gi|171278945|gb|EDT46606.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC
27678]
gi|304553908|gb|EFM41819.1| cold-shock domain family protein [Bifidobacterium dentium ATCC
27679]
gi|308221473|gb|EFO77770.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium
JCVIHMP022]
Length = 129
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ +KGYGFI E G DVFL A+ G+ L +G V Y ++
Sbjct: 1 MPSGRVRWFDTNKGYGFIQNE----QGADVFLPAVAL-PEGVKTLRKGAKVEYSVIEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ LV + +
Sbjct: 56 G--PQAMNVTLVASAPS 70
>gi|126664472|ref|ZP_01735456.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
ELB17]
gi|126630798|gb|EBA01412.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
ELB17]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT E G DVF+H S++ G L EGQ V + Q
Sbjct: 5 TGTVKFFNEAKGFGFITRE----GGPDVFVHYSSIQGGGFKTLAEGQQVEFTVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AEN+ V
Sbjct: 60 -PQAENVVAV 68
>gi|332187928|ref|ZP_08389661.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
gi|332012089|gb|EGI54161.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKGYGFI+P+G G+D F+H SAV AG+ +L + Q + Y+ Q D
Sbjct: 1 MSMSGTVKFFNADKGYGFISPDG---GGNDAFVHISAVERAGMISLNQNQRLNYELEQ-D 56
Query: 61 ANGKYSAENLKL 72
GK SA NL+
Sbjct: 57 RRGKTSAVNLQP 68
>gi|270264889|ref|ZP_06193153.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
gi|270041187|gb|EFA14287.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ S+ L EGQ V +
Sbjct: 6 TGLVKWFNADKGFGFITPQD---GSKDVFVHFSAIQSSDFKTLDEGQKVEFSVESGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|194292370|ref|YP_002008277.1| cold shock protein, transcription antiterminator, affects
expression of rpos and uspa [Cupriavidus taiwanensis
LMG 19424]
gi|193226274|emb|CAQ72223.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Cupriavidus taiwanensis
LMG 19424]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + +G +L EGQ V Y
Sbjct: 1 METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEIQGSGFKSLAEGQKVRYVAGVGQK 57
Query: 62 NGKYSAENLKLV 73
+A ++ +
Sbjct: 58 G--PAATKIEPI 67
>gi|170723258|ref|YP_001750946.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida W619]
gi|169761261|gb|ACA74577.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI E G DVF+H A+ G L EGQ V Y VQ
Sbjct: 4 RETGNVKWFNDAKGFGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQRVEYSCVQGQK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|322433221|ref|YP_004210442.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321165613|gb|ADW71315.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 83
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ + G +KW+N KGYGF+ E G DVF+H S++ G L EG V +D +Q
Sbjct: 1 MAQYVGEVKWFNNAKGYGFLGRE----GGPDVFVHYSSIQLDGYKTLKEGDPVEFDIIQG 56
Query: 60 DANGKYSAENLKLVPKSS 77
+ A+ + + S
Sbjct: 57 NKG--PQADKVTRIGSSP 72
>gi|118591841|ref|ZP_01549236.1| cold shock protein [Stappia aggregata IAM 12614]
gi|118435484|gb|EAV42130.1| cold shock protein [Stappia aggregata IAM 12614]
Length = 286
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++K++ DKG+GFITP+ E DVF+H SAV +G L GQ V+++ +
Sbjct: 202 RQSGTVKFFKNDKGFGFITPD---EGDADVFVHISAVERSGFAGLDSGQRVSFETEPDRR 258
Query: 62 NGKYSAENLKLVPKS 76
A NL+ +
Sbjct: 259 GKGPKAVNLQALEDG 273
>gi|312962742|ref|ZP_07777231.1| temperature acclimation protein b [Pseudomonas fluorescens WH6]
gi|330811374|ref|YP_004355836.1| transcription factor, Csd family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|311283117|gb|EFQ61709.1| temperature acclimation protein b [Pseudomonas fluorescens WH6]
gi|327379482|gb|AEA70832.1| Putative transcription factor, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--MQADEVQ 67
>gi|291326350|ref|ZP_06124178.2| conserved domain protein [Providencia rettgeri DSM 1131]
gi|291314673|gb|EFE55126.1| conserved domain protein [Providencia rettgeri DSM 1131]
Length = 66
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP DVF+H SA+ S +L EGQ V++
Sbjct: 2 TGTVKWFNDDKGFGFITPAD---GSKDVFVHFSAIQSDNFKSLAEGQQVSFTIENGAKG- 57
Query: 64 KYSAENL 70
+A N+
Sbjct: 58 -PAAANV 63
>gi|221369643|ref|YP_002520739.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
gi|221162695|gb|ACM03666.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+G I P DVF+H +A+ AG+ L +GQ VTYD + D
Sbjct: 1 MANGTVKWFNSTKGFGSIAPA---HGSKDVFVHVTALERAGIRQLNDGQAVTYDM-ETDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESAMNLVL 67
>gi|116748014|ref|YP_844701.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697078|gb|ABK16266.1| cold-shock DNA-binding protein family [Syntrophobacter
fumaroxidans MPOB]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI + DVF+H SA+ AG +L EG+ V ++ Q
Sbjct: 1 MAEGRVKWFNEKKGYGFIETD----GQGDVFVHYSAIEGAGFRSLNEGEQVRFEVEQGSK 56
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 57 G--PQAVRVQRV 66
>gi|260598404|ref|YP_003210975.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
gi|260217581|emb|CBA31827.1| Cold shock protein cspA [Cronobacter turicensis z3032]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP DVF+H SA+ S L EGQ V++
Sbjct: 6 TGLVKWFNADKGFGFITPND---GSKDVFVHFSAIQSDNFKTLDEGQQVSFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVTPL 70
>gi|253990173|ref|YP_003041529.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781623|emb|CAQ84786.1| cold shock-like protein cspc (csp-c) [Photorhabdus asymbiotica]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 6 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFTIESGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAI 70
>gi|254447090|ref|ZP_05060557.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
HTCC5015]
gi|198263229|gb|EDY87507.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
HTCC5015]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFI P TE GDD+F+H SA+ G L EG VT++ +
Sbjct: 1 MATAGTVKWFNNAKGFGFIVP---TEGGDDIFVHYSAIIGDGFKTLVEGDSVTFEVEEGP 57
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 58 KGKL--AQNV 65
>gi|116249765|ref|YP_765603.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254413|emb|CAK04052.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
viciae 3841]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG GFI P+ + DVF+H SAV AG L +GQ + Y+ V++
Sbjct: 1 MATGTVKWFDATKGSGFIQPDDGSI---DVFVHISAVERAGRLGLNDGQKIAYELVKDRM 57
Query: 62 NGKYSAENLK 71
+GK SA+NL+
Sbjct: 58 SGKMSADNLQ 67
>gi|50952760|gb|AAT90293.1| putative cold shock protein [uncultured proteobacterium
eBACred25D05]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI P G+DVF+H SAV +GL L E QLV ++ V+
Sbjct: 1 MPQGKVKWFNTTKGFGFIEPSD---GGNDVFVHISAVQKSGLKGLAEDQLVNFELVEG-R 56
Query: 62 NGKYSAENLKL 72
+G+ A+ L L
Sbjct: 57 DGRQMADELSL 67
>gi|226945960|ref|YP_002801033.1| Cold-shock-like protein [Azotobacter vinelandii DJ]
gi|226720887|gb|ACO80058.1| Cold-shock-like protein [Azotobacter vinelandii DJ]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI E SG DVF+H A+ G +L EGQ V + +Q
Sbjct: 7 GTVKWFNDAKGYGFIQRE----SGPDVFVHYRAIRGEGHRSLIEGQKVEFSVIQGQKG-- 60
Query: 65 YSAENLKL 72
AE++
Sbjct: 61 LQAEDVSK 68
>gi|262279640|ref|ZP_06057425.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
gi|262259991|gb|EEY78724.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
Length = 71
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI + G D+F H + + + G L EGQ V + VQ
Sbjct: 4 TTGTVKWFNETKGFGFIVTD----EGKDIFAHFTDIQTPGFKVLLEGQRVEFTVVQGKKG 59
Query: 63 GKYSAENLKLVPKS 76
A N+ +V S
Sbjct: 60 --PQASNIVIVQNS 71
>gi|154508286|ref|ZP_02043928.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
17982]
gi|293194037|ref|ZP_06609919.1| putative cold shock protein [Actinomyces odontolyticus F0309]
gi|153797920|gb|EDN80340.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
17982]
gi|292819791|gb|EFF78800.1| putative cold shock protein [Actinomyces odontolyticus F0309]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
+ G+IKW+N KG+GFITP+ + DVF+H S + +G L EG+ V Y+ ++
Sbjct: 1 MATGTIKWFNDAKGFGFITPDDESG---DVFVHYSNIIGQSGRRTLLEGEKVEYEAIEGP 57
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 58 KG--LQAMNV 65
>gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa]
gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa]
Length = 207
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW++ KG+GFI+P+ DD+F+H+S++ S G +L +G+ V + ++N
Sbjct: 4 RQTGKVKWFSDQKGFGFISPDD---GSDDLFVHQSSIKSEGYRSLGDGEEVEF-VIENSD 59
Query: 62 NGKYSAENLK 71
+G+ A ++
Sbjct: 60 DGRTKAVDVT 69
>gi|253699301|ref|YP_003020490.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
gi|251774151|gb|ACT16732.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 66
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + G DVF+H S++ G +L EG VT+D VQ
Sbjct: 1 MANGVVKWFNDAKGFGFIEQDN----GVDVFVHFSSIQGDGFKSLVEGDAVTFDVVQGAK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|71725901|gb|AAZ39069.1| cold shock protein [Exiguobacterium undae]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N ++G+GFI E SGDDVF+H SA+ + G +L EGQ V+++ +
Sbjct: 8 GTVKWFNLEEGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFEVEEGQRG-- 61
Query: 65 YSAENLK 71
A N+
Sbjct: 62 PQAANVT 68
>gi|71735994|ref|YP_273427.1| cold shock domain-contain protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487383|ref|ZP_05641424.1| cold shock domain-contain protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289623813|ref|ZP_06456767.1| cold shock domain-contain protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649164|ref|ZP_06480507.1| cold shock domain-contain protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298485821|ref|ZP_07003899.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|71556547|gb|AAZ35758.1| cold shock domain family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159645|gb|EFI00688.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320322886|gb|EFW78977.1| cold shock domain-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329805|gb|EFW85793.1| cold shock domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330867848|gb|EGH02557.1| cold shock domain-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330989711|gb|EGH87814.1| cold shock domain-contain protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--MQADEVQ 67
>gi|148652425|ref|YP_001279518.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
sp. PRwf-1]
gi|148571509|gb|ABQ93568.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
gi|332977982|gb|EGK14726.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)]
Length = 71
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI + G DVF H SA+ +G L EGQ VT+ Q
Sbjct: 6 QGTVKWFNEAKGFGFIAQDD---GGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQKG- 61
Query: 64 KYSAENLK 71
AE ++
Sbjct: 62 -PQAEQIE 68
>gi|299065287|emb|CBJ36455.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum CMR15]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + +G L EGQ V Y
Sbjct: 1 METGTVKWFNESKGFGFITPD---AGGNDLFAHFSEIQGSGFKTLQEGQKVRYVAGVGQK 57
Query: 62 NGKYSAENLKLV 73
+A ++ +
Sbjct: 58 G--PAATKIEPI 67
>gi|73539008|ref|YP_299375.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|116695865|ref|YP_841441.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|300694434|ref|YP_003750407.1| cold shock/stress protein, member of the csp-family [Ralstonia
solanacearum PSI07]
gi|72122345|gb|AAZ64531.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
gi|113530364|emb|CAJ96711.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|299076471|emb|CBJ35788.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum PSI07]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + G +L EGQ V Y
Sbjct: 1 METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEIQGNGFKSLQEGQKVRYVAGVGQK 57
Query: 62 NGKYSAENLKLV 73
+A ++ +
Sbjct: 58 G--PAATKIEPI 67
>gi|290473777|ref|YP_003466651.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004]
gi|289173084|emb|CBJ79857.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004]
Length = 71
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFI+P+ DVF+H SA+ S L EGQ V++
Sbjct: 6 TGTVKWFNSDKGFGFISPKD---GSKDVFVHFSAIQSNDYKTLDEGQEVSFSVESGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSATNV 67
>gi|261250705|ref|ZP_05943279.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891]
gi|260937578|gb|EEX93566.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 6 TGSVKWFNETKGFGFLTQDN---GGADVFVHFRAIASDGFKTLNEGQKVSFEVEQGQKG- 61
Query: 64 KYSAENL 70
A N+
Sbjct: 62 -LQAANV 67
>gi|322419522|ref|YP_004198745.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320125909|gb|ADW13469.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 66
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF+H SA+ S G +LTEG VT++ V+
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAINSDGFKSLTEGDSVTFEIVKGPK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--LQAANVS 64
>gi|116696141|ref|YP_841717.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
gi|113530640|emb|CAJ96987.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ E G+D+F H SA+ G +L EGQ V Y
Sbjct: 1 METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--EQATKIQAL 67
>gi|26990715|ref|NP_746140.1| cold-shock protein CspD [Pseudomonas putida KT2440]
gi|24985709|gb|AAN69604.1|AE016594_1 cold-shock protein CspD [Pseudomonas putida KT2440]
Length = 88
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI EG + DD+F H SA+ G L GQ V ++ VQ
Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIQMDGYKTLKAGQAVVFNIVQGPK 57
Query: 62 NGKYSAENLK 71
A +K
Sbjct: 58 G--LHAVEIK 65
>gi|94313078|ref|YP_586287.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
metallidurans CH34]
gi|93356930|gb|ABF11018.1| cold-shock DNA-binding domain protein, anti-terminator of
transcription [Cupriavidus metallidurans CH34]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ G +L EGQ V Y
Sbjct: 1 METGTVKWFNDAKGFGFITPD---AGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--EQATKIQAI 67
>gi|197285535|ref|YP_002151407.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227356030|ref|ZP_03840421.1| cold shock family protein [Proteus mirabilis ATCC 29906]
gi|194683022|emb|CAR43496.1| cold shock-like protein [Proteus mirabilis HI4320]
gi|227163807|gb|EEI48715.1| cold shock family protein [Proteus mirabilis ATCC 29906]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 6 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAL 70
>gi|320108152|ref|YP_004183742.1| cold-shock DNA-binding domain-containing protein [Terriglobus
saanensis SP1PR4]
gi|319926673|gb|ADV83748.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
SP1PR4]
Length = 71
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++GS+KW+N KG+GF+ E G DVF+H S++ G +L EG V +D +Q +
Sbjct: 4 YKGSVKWFNNAKGFGFLGREN----GPDVFVHYSSIQLDGYKSLKEGDEVEFDVIQGEKG 59
Query: 63 GKYSAENLKLVPKS 76
A+ + + ++
Sbjct: 60 --PQADQVTRIKEA 71
>gi|307823940|ref|ZP_07654168.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307735234|gb|EFO06083.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G++KW+N KG+GFI+P DVF+H SA+AS G L EGQ V YD
Sbjct: 1 MATGTVKWFNEAKGFGFISPSD---GSADVFVHFSAIASDGGYRTLAEGQAVKYDVESGP 57
Query: 61 ANGKYSAENLK 71
A +
Sbjct: 58 KG--PQASQVS 66
>gi|294636901|ref|ZP_06715229.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|291089892|gb|EFE22453.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
Length = 81
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+ G L EGQ V Y Q+
Sbjct: 16 KTGQVKWFNESKGFGFIEQHD---GGKDVFVHFSAITGDGFKTLAEGQRVEYTI-QDSPR 71
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 72 GPAAANVVAL 81
>gi|110833014|ref|YP_691873.1| cold-shock protein [Alcanivorax borkumensis SK2]
gi|254427611|ref|ZP_05041318.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
gi|110646125|emb|CAL15601.1| cold-shock protein [Alcanivorax borkumensis SK2]
gi|196193780|gb|EDX88739.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
Length = 68
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GF+ E G DVF H SA+ +G L EGQ V + Q
Sbjct: 5 KGTVKWFNEAKGFGFLEQEN----GPDVFAHFSAITGSGFKTLAEGQAVEFTVTQGPKG- 59
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 60 -PQAENIVAL 68
>gi|71725891|gb|AAZ39064.1| cold shock protein [Exiguobacterium sibiricum]
gi|71725893|gb|AAZ39065.1| cold shock protein [Exiguobacterium undae]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E SGDDVF+H SA+ + G +L EGQ V+++ +
Sbjct: 4 GIVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFEVEEGQRGPP 59
Query: 65 YSAENLK 71
A N+
Sbjct: 60 --AANVT 64
>gi|257063443|ref|YP_003143115.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens
DSM 20476]
gi|256791096|gb|ACV21766.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens
DSM 20476]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++P+KGYGFI+ G+++F+H S + G L EG VT++ + A
Sbjct: 1 MAEGTVKWFSPEKGYGFISQAD----GENLFVHFSEIQMDGYKTLEEGAKVTFEVTEG-A 55
Query: 62 NGKYSAENL 70
NGK A N+
Sbjct: 56 NGKKQASNV 64
>gi|306834445|ref|ZP_07467559.1| cold shock protein CspA [Streptococcus bovis ATCC 700338]
gi|304423431|gb|EFM26583.1| cold shock protein CspA [Streptococcus bovis ATCC 700338]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI+ E G DVF H S + S G +L +GQ V +D Q
Sbjct: 1 MVQGTVKWFNTDKGFGFISQEN----GADVFAHFSEIKSNGFKSLEDGQKVQFDVEQGKR 56
Query: 62 NGKYSAENLKLVP 74
A N+ +
Sbjct: 57 G--LQAVNIIKIS 67
>gi|304438239|ref|ZP_07398181.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304368846|gb|EFM22529.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 72
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ DKGYGFI+ E GDDVF+H S++ G L+EGQ V +D V+
Sbjct: 8 TGKVKWFSADKGYGFISRED----GDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEGARG- 62
Query: 64 KYSAENL 70
A+N+
Sbjct: 63 -PQADNV 68
>gi|283768673|ref|ZP_06341585.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219]
gi|283105065|gb|EFC06437.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219]
Length = 70
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA---SAGLFNLTEGQLVTYDYVQ 58
+ G +KW++ KGYGFIT + G D+F+H SA+ G L EGQ V ++ +
Sbjct: 1 MLTGKVKWFDDQKGYGFITSDD---EGKDIFVHFSAIKEGDENGHKTLKEGQAVQFEVEE 57
Query: 59 NDANGKYSAENLKLV 73
+ A N++ +
Sbjct: 58 GEKG--PHASNVEKL 70
>gi|297204693|ref|ZP_06922090.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
gi|197710764|gb|EDY54798.1| cold shock domain-containing protein CspD [Streptomyces sviceus
ATCC 29083]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G G DVF H S +A+ G L EGQ VT+D
Sbjct: 1 MASGTVKWFNAAKGFGFIEQDG---GGADVFAHFSNIAAQGFRELLEGQKVTFDIAAGQK 57
Query: 62 NGKYSAENLKL 72
+AEN+ L
Sbjct: 58 G--PTAENIVL 66
>gi|53804855|ref|YP_113293.1| cold shock protein [Methylococcus capsulatus str. Bath]
gi|53758616|gb|AAU92907.1| cold shock protein [Methylococcus capsulatus str. Bath]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI E G D+F+H ++ G L EGQ V++ V
Sbjct: 5 QQGTVKWFNESKGFGFIQREN----GSDLFVHFRSIQGQGFKTLKEGQRVSFTEVAGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ ++
Sbjct: 61 --PQAENVVVL 69
>gi|237807342|ref|YP_002891782.1| cold-shock DNA-binding domain-containing protein [Tolumonas
auensis DSM 9187]
gi|237499603|gb|ACQ92196.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
9187]
Length = 69
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF++ + G DVF+H SA+AS G L EGQ V++D +
Sbjct: 5 NGSVKWFNETKGFGFLSQDN---GGKDVFVHFSAIASTGFKTLAEGQAVSFDIEEGQRG- 60
Query: 64 KYSAENLKL 72
SA N+ +
Sbjct: 61 -PSAVNVTV 68
>gi|73538776|ref|YP_299143.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72122113|gb|AAZ64299.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 67
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H SA+ AG +L EGQ V Y
Sbjct: 1 METGTVKWFNDAKGFGFITPD---AGGNDLFAHFSAIEGAGFKSLKEGQKVRYVKAMGQK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--EQATKIQAV 67
>gi|262369668|ref|ZP_06062996.1| cold-shock domain-containing protein [Acinetobacter johnsonii
SH046]
gi|262315736|gb|EEY96775.1| cold-shock domain-containing protein [Acinetobacter johnsonii
SH046]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + V+
Sbjct: 4 REQGVVKWFNDTKGFGFIQR----NGGDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQK 59
Query: 62 NGKYSAENLKLVP 74
+ AE ++ +
Sbjct: 60 G--FQAEEVQPLD 70
>gi|51245724|ref|YP_065608.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54]
gi|50876761|emb|CAG36601.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila
LSv54]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E GDD+F+H +++ ++G L EG V+++
Sbjct: 1 MAEGIVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVSFEIEDGAK 56
Query: 62 NGKYSAENLKLV 73
+A N+ +
Sbjct: 57 G--PAAANVTAL 66
>gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326197039|gb|EGD54231.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 139
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KG+GF+ S G+DV++ +A+ + + L GQ V +D
Sbjct: 1 MPTGRVKWYDSAKGFGFL----SQTDGEDVYVRANALPAD-VPELKVGQKVEFDMAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + ++ + +
Sbjct: 56 G--PQALRVTVLEPAPS 70
>gi|269139481|ref|YP_003296182.1| major cold shock protein [Edwardsiella tarda EIB202]
gi|267985142|gb|ACY84971.1| major cold shock protein [Edwardsiella tarda EIB202]
gi|304559373|gb|ADM42037.1| Cold shock protein CspG [Edwardsiella tarda FL6-60]
Length = 71
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGSVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSNEFRTLDEGQQVEFSVENGPKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAI 70
>gi|197284696|ref|YP_002150568.1| cold shock protein [Proteus mirabilis HI4320]
gi|227357693|ref|ZP_03842042.1| cold shock protein [Proteus mirabilis ATCC 29906]
gi|194682183|emb|CAR41839.1| putative cold shock protein [Proteus mirabilis HI4320]
gi|227162022|gb|EEI47036.1| cold shock protein [Proteus mirabilis ATCC 29906]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP+ DVF+H SA+ S +L EGQ V++
Sbjct: 6 TGTVKWFNDDKGFGFITPKD---GSKDVFVHFSAIQSDSFKSLKEGQEVSFSIENGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|86360861|ref|YP_472748.1| putative cold shock protein [Rhizobium etli CFN 42]
gi|86284963|gb|ABC94021.1| putative cold shock protein [Rhizobium etli CFN 42]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ DVF+H SAV AG+ ++ EGQ + + +
Sbjct: 1 MTIGTVKWFNSTKGFGFIQPDD---GSADVFVHISAVERAGMSSIAEGQKLGFQLEHDRK 57
Query: 62 NGKYSAENLK 71
+GK SA L+
Sbjct: 58 SGKMSAGQLQ 67
>gi|84516461|ref|ZP_01003820.1| cold shock family protein [Loktanella vestfoldensis SKA53]
gi|84509497|gb|EAQ05955.1| cold shock family protein [Loktanella vestfoldensis SKA53]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G+D+F+H SAV +G+ L + Q +T+D V+
Sbjct: 1 MPSGTVKWFNTTKGFGFIAPDD---GGNDIFVHISAVEQSGMTGLADNQKITFDLVEG-R 56
Query: 62 NGKYSAENL 70
+G+ A NL
Sbjct: 57 DGRKMAGNL 65
>gi|308274610|emb|CBX31209.1| Cold shock-like protein cspE [uncultured Desulfobacterium sp.]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GFI E G DVF+H SA+ +G L EG V++D Q
Sbjct: 1 MAKGIVKWFNDKKGFGFIEKE----EGGDVFVHHSAITMSGFRTLAEGDRVSFDVEQGKQ 56
Query: 62 NGKYSAENLKLV 73
+A+N+ +
Sbjct: 57 G--PAAKNVVKI 66
>gi|254491849|ref|ZP_05105028.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
thiooxidans DMS010]
gi|224463327|gb|EEF79597.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
thiooxydans DMS010]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI SG DVF H SA+ S+G L EGQ V +
Sbjct: 5 TTGTVKWFNEAKGFGFIE----QASGPDVFAHFSAIVSSGFKTLMEGQKVEFTVTTGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ V
Sbjct: 61 --PQAENIVAV 69
>gi|222099844|ref|YP_002534412.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
gi|221572234|gb|ACM23046.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ +
Sbjct: 2 RGKVKWFDAKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEVQEGKKG- 56
Query: 64 KYSAENLKLVP 74
A ++++V
Sbjct: 57 -PQAAHVRVVE 66
>gi|293396765|ref|ZP_06641041.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|291421029|gb|EFE94282.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+ + G L EGQ V Y Q+
Sbjct: 4 KTGQVKWFNESKGFGFIEQHD---GGKDVFVHFSAIMTDGFKTLAEGQRVEYTI-QDSPR 59
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 60 GPAAANVVAL 69
>gi|317053579|ref|YP_004118713.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|316952684|gb|ADU72157.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG GFITPE DVF+H SA+ +L EGQ V +
Sbjct: 7 GTVKWFNAEKGLGFITPEN---GSKDVFVHFSAIQGNDYRSLDEGQRVEFILENGQKG-- 61
Query: 65 YSAENLKLV 73
+A N+ +
Sbjct: 62 PAAANITGL 70
>gi|15616931|ref|NP_240144.1| cold shock-like protein CspC [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681685|ref|YP_002468071.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682240|ref|YP_002468624.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471376|ref|ZP_05635375.1| cold shock-like protein CspC [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11131708|sp|P57407|CSPC_BUCAI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
gi|25296148|pir||F84967 cold shock-like protein cspC [imported] - Buchnera sp. (strain
APS)
gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621973|gb|ACL30129.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624528|gb|ACL30683.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086059|gb|ADP66141.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086633|gb|ADP66714.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087216|gb|ADP67296.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087737|gb|ADP67816.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H S++ G LTEGQ V ++
Sbjct: 5 KGQVKWFNESKGFGFITPSD---GSKDVFVHFSSIQGNGFKTLTEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENL 70
+A N+
Sbjct: 61 -PAAVNV 66
>gi|134300024|ref|YP_001113520.1| cold-shock DNA-binding domain-containing protein
[Desulfotomaculum reducens MI-1]
gi|134052724|gb|ABO50695.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
MI-1]
Length = 65
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G DVF+H SA+ S G L EG+ V ++ ++ G
Sbjct: 2 QGKVKWFNANKGYGFIESEI----GTDVFVHYSAIQSEGYRTLEEGEPVDFEIIEGTR-G 56
Query: 64 KYSAENLKL 72
+A +KL
Sbjct: 57 PQAANVIKL 65
>gi|292670014|ref|ZP_06603440.1| cold shock protein [Selenomonas noxia ATCC 43541]
gi|292648315|gb|EFF66287.1| cold shock protein [Selenomonas noxia ATCC 43541]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ DKGYGFI+ E GDDVF+H S++ G L+EGQ V +D V+
Sbjct: 2 TGKVKWFSADKGYGFISRED----GDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEGARG- 56
Query: 64 KYSAENL 70
A+N+
Sbjct: 57 -PQADNV 62
>gi|289152158|gb|ADC84009.1| cold shock-like protein [Escherichia coli]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GFITP DVF+H SA+ G L EGQ V ++ +
Sbjct: 8 VKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG--PA 62
Query: 67 AENLKLV 73
A N+ +
Sbjct: 63 AVNVTAI 69
>gi|123444003|ref|YP_001007973.1| major cold shock protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332163163|ref|YP_004299740.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|1778828|gb|AAB40924.1| major cold shock protein CSPA2 [Yersinia enterocolitica]
gi|122090964|emb|CAL13846.1| major cold shock protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318603953|emb|CBY25451.1| cold shock protein CspG [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667393|gb|ADZ44037.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862836|emb|CBX72977.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFNADKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|323489356|ref|ZP_08094586.1| cold shock protein [Planococcus donghaensis MPA1U2]
gi|323396997|gb|EGA89813.1| cold shock protein [Planococcus donghaensis MPA1U2]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++KW+N +KGYGFI GDDVF+H + + G LTEG+ V++D + +
Sbjct: 1 MNQGTVKWFNSEKGYGFIEYND----GDDVFVHFTGIQGDGFRTLTEGKTVSFDII-DGN 55
Query: 62 NGKYSAENLKLVPK 75
G +A +++ P+
Sbjct: 56 RGPQAANVIEVDPE 69
>gi|66045400|ref|YP_235241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|289673296|ref|ZP_06494186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae FF5]
gi|302187611|ref|ZP_07264284.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae 642]
gi|63256107|gb|AAY37203.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|330898081|gb|EGH29500.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330951864|gb|EGH52124.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
gi|330973953|gb|EGH74019.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ VT+ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQK 60
Query: 62 NGKYSAENLKL 72
AE +++
Sbjct: 61 G--MQAEEVQV 69
>gi|28869573|ref|NP_792192.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|71734745|ref|YP_274352.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola
1448A]
gi|213970497|ref|ZP_03398624.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1]
gi|237801017|ref|ZP_04589478.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str.
1_6]
gi|257486174|ref|ZP_05640215.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289623638|ref|ZP_06456592.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289647144|ref|ZP_06478487.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
2250]
gi|298486699|ref|ZP_07004756.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|301384172|ref|ZP_07232590.1| cold shock protein CapA [Pseudomonas syringae pv. tomato Max13]
gi|302063987|ref|ZP_07255528.1| cold shock protein CapA [Pseudomonas syringae pv. tomato K40]
gi|302132645|ref|ZP_07258635.1| cold shock protein CapA [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|28852815|gb|AAO55887.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|71555298|gb|AAZ34509.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola
1448A]
gi|213924668|gb|EEB58236.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1]
gi|298158782|gb|EFH99845.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320324300|gb|EFW80379.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
B076]
gi|320328578|gb|EFW84580.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330888313|gb|EGH20974.1| cold shock protein CapA [Pseudomonas syringae pv. mori str.
301020]
gi|331016141|gb|EGH96197.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str.
M302278PT]
gi|331023874|gb|EGI03931.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQK 60
Query: 62 NGKYSAENLKL 72
AE +++
Sbjct: 61 G--MQAEQVRV 69
>gi|26988254|ref|NP_743679.1| cold shock protein CspA [Pseudomonas putida KT2440]
gi|148549408|ref|YP_001269510.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida F1]
gi|167032140|ref|YP_001667371.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida GB-1]
gi|325278118|ref|ZP_08143630.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
gi|24982997|gb|AAN67143.1|AE016343_3 cold shock protein CspA [Pseudomonas putida KT2440]
gi|148513466|gb|ABQ80326.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
gi|166858628|gb|ABY97035.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
gi|313500255|gb|ADR61621.1| CspA [Pseudomonas putida BIRD-1]
gi|324096743|gb|EGB95077.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E G DVF+H A+ G L EGQ V Y VQ
Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQRVEYACVQGQK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|307328240|ref|ZP_07607418.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886074|gb|EFN17082.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 67
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G G DVF H S +A+ G L EGQ VT+D
Sbjct: 1 MASGTVKWFNAAKGFGFIEQDG---GGADVFAHFSNIAAEGFRELLEGQKVTFDVAAGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|78486201|ref|YP_392126.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira
crunogena XCL-2]
gi|78364487|gb|ABB42452.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena
XCL-2]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI E G DVF+H SA+ AG +L EGQ VT + Q
Sbjct: 6 TGTVKWFNDEKGFGFIEQE----GGKDVFVHFSAINGAGRKSLMEGQSVTMEVTQGQKG- 60
Query: 64 KYSAENLK 71
AEN+
Sbjct: 61 -PQAENVT 67
>gi|77362295|ref|YP_341869.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
gi|76877206|emb|CAI89423.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI E SG DVF H SA++ G L EGQ V + Q
Sbjct: 5 TTGSVKWFNEAKGFGFIEQE----SGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --PQAENIVAI 69
>gi|88703593|ref|ZP_01101309.1| cold-shock domain family protein [Congregibacter litoralis KT71]
gi|88702307|gb|EAQ99410.1| cold-shock domain family protein [Congregibacter litoralis KT71]
Length = 189
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E GD++F+H ++ G +L +G V Y V D
Sbjct: 124 EEGTVKWFNGTKGFGFIIREN----GDEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTDKG 179
Query: 63 GKYSAENLKLVP 74
AE ++ +
Sbjct: 180 --PQAEEVEALD 189
>gi|291459899|ref|ZP_06599289.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417240|gb|EFE90959.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 65
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N KGYGFI+ E +G DVF+H S +A G +L EGQ V +D V
Sbjct: 2 RGTVKWFNNQKGYGFISDE----TGKDVFVHYSGLAGEGFKSLEEGQAVEFDVVDGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVVKL 65
>gi|22124144|ref|NP_667567.1| cold shock-like protein [Yersinia pestis KIM 10]
gi|45443633|ref|NP_995172.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
gi|21956899|gb|AAM83818.1|AE013622_7 cold shock-like protein [Yersinia pestis KIM 10]
gi|45438503|gb|AAS64049.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
Length = 95
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 31 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 86
Query: 64 KYSAENL 70
+A N+
Sbjct: 87 -PAAVNV 92
>gi|87118640|ref|ZP_01074539.1| probable cold-shock protein [Marinomonas sp. MED121]
gi|86166274|gb|EAQ67540.1| probable cold-shock protein [Marinomonas sp. MED121]
Length = 158
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GF+T + G+DVF+H A+ G L EGQ V + + +
Sbjct: 93 GTVKWFNSSKGFGFLTRDN----GEDVFVHYRAIRGRGRRFLIEGQQVRFYVTEGEKGK- 147
Query: 65 YSAENLKLV 73
AEN+ ++
Sbjct: 148 -QAENVSIL 155
>gi|170721149|ref|YP_001748837.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida W619]
gi|169759152|gb|ACA72468.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 60
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 61 G--MQAAQVRP 69
>gi|91200723|emb|CAJ73775.1| strongly similar to cold shock protein CspB [Candidatus Kuenenia
stuttgartiensis]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI+ E G DVF+H++++ S G L EG V +D + +
Sbjct: 1 MANGTVKWFNDSKGFGFISQEN----GTDVFVHQTSIKSEGFRTLAEGDKVEFDVISDQK 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--QKATNVVKV 66
>gi|332535445|ref|ZP_08411230.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505]
gi|332035128|gb|EGI71641.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505]
Length = 72
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q
Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57
Query: 62 NGKYSAENL 70
A+N+
Sbjct: 58 G--LHAKNI 64
>gi|89256660|ref|YP_514022.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
gi|156502808|ref|YP_001428873.1| cold-shock DNA-binding domain-containing protein [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|167010528|ref|ZP_02275459.1| hypothetical protein Ftulh_07407 [Francisella tularensis subsp.
holarctica FSC200]
gi|254367972|ref|ZP_04983992.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
gi|290953400|ref|ZP_06558021.1| cold shock protein [Francisella tularensis subsp. holarctica
URFT1]
gi|295313361|ref|ZP_06803970.1| cold shock protein [Francisella tularensis subsp. holarctica
URFT1]
gi|89144491|emb|CAJ79800.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
gi|134253782|gb|EBA52876.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
gi|156253411|gb|ABU61917.1| cold-shock DNA-binding domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 67
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI P+ G DVF+H SAV +AGL +L E + V+++ +N
Sbjct: 1 MRQGTVKFFNTSKGFGFIEPQD---GGKDVFVHISAVENAGLSSLRESEKVSFEVEEN-- 55
Query: 62 NGKYSAENLKLV 73
GK +A N+K +
Sbjct: 56 RGKMAAVNIKSI 67
>gi|77360666|ref|YP_340241.1| cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125]
gi|76875577|emb|CAI86798.1| nucleic acid-binding domain, cold-shock RNA chaperone
[Pseudoalteromonas haloplanktis TAC125]
Length = 72
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q
Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57
Query: 62 NGKYSAENL 70
A+N+
Sbjct: 58 G--LHAKNI 64
>gi|88706396|ref|ZP_01104101.1| Cold shock protein [Congregibacter litoralis KT71]
gi|88699332|gb|EAQ96446.1| Cold shock protein [Congregibacter litoralis KT71]
Length = 68
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF+H SA+ G LT+GQ V +
Sbjct: 5 TGTVKWFNESKGFGFIERE----GGPDVFVHFSAIKGDGFKTLTDGQKVEFTVTDGQKG- 59
Query: 64 KYSAENLKLV 73
AE++ V
Sbjct: 60 -PQAEDVVAV 68
>gi|288575007|ref|ZP_06393364.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570748|gb|EFC92305.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 65
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFIT E G+DVF+H SA+ G L E +V ++ +
Sbjct: 2 KGTVKWFNGTKGYGFITTE----EGNDVFVHFSAIQMDGYKTLEENDVVEFEITNGEKG- 56
Query: 64 KYSAENLK 71
A N+
Sbjct: 57 -PQASNVT 63
>gi|302786020|ref|XP_002974781.1| hypothetical protein SELMODRAFT_58801 [Selaginella
moellendorffii]
gi|300157676|gb|EFJ24301.1| hypothetical protein SELMODRAFT_58801 [Selaginella
moellendorffii]
Length = 145
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P +G+GFITP+ D+F+H++++ + G +L EG++V Y V+ +G+
Sbjct: 1 GKVKWFSPTRGFGFITPDD---GSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 56
Query: 65 YSAENLK 71
A N+
Sbjct: 57 MRAGNVT 63
>gi|290474928|ref|YP_003467812.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
gi|300722620|ref|YP_003711910.1| cold shock protein, transcription antiterminator [Xenorhabdus
nematophila ATCC 19061]
gi|289174245|emb|CBJ81034.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus bovienii
SS-2004]
gi|297629127|emb|CBJ89717.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Xenorhabdus nematophila
ATCC 19061]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 6 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVTAI 70
>gi|197118603|ref|YP_002139030.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|253700626|ref|YP_003021815.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
gi|197087963|gb|ACH39234.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|251775476|gb|ACT18057.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GF+ E G+DVF+H SA+ G +LTEG VT++ V+
Sbjct: 1 MVNGTVKWFNDSKGFGFLEQEN----GEDVFVHFSAINGDGFKSLTEGDSVTFEIVKGPK 56
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 57 G--LQAANVS 64
>gi|163939029|ref|YP_001643913.1| cold-shock DNA-binding domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|229010524|ref|ZP_04167726.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
gi|229056860|ref|ZP_04196256.1| Cold shock-like protein cspB [Bacillus cereus AH603]
gi|229132025|ref|ZP_04260888.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
gi|229166069|ref|ZP_04293831.1| Cold shock-like protein cspB [Bacillus cereus AH621]
gi|2493761|sp|Q45096|CSPA_BACCE RecName: Full=Major cold shock protein CspA
gi|1405470|emb|CAA63607.1| CspA protein [Bacillus cereus]
gi|163861226|gb|ABY42285.1| cold-shock DNA-binding domain protein [Bacillus
weihenstephanensis KBAB4]
gi|209972082|gb|ACJ03552.1| cold shock protein [Bacillus thuringiensis serovar bolivia]
gi|209972084|gb|ACJ03553.1| cold shock protein [Bacillus weihenstephanensis]
gi|209972102|gb|ACJ03562.1| cold shock protein [Bacillus thuringiensis serovar vazensis]
gi|209972104|gb|ACJ03563.1| cold shock protein [Bacillus mycoides]
gi|209972106|gb|ACJ03564.1| cold shock protein [Bacillus weihenstephanensis]
gi|210077343|gb|ACJ06958.1| cold shock protein [Bacillus thuringiensis serovar navarrensis]
gi|228617378|gb|EEK74441.1| Cold shock-like protein cspB [Bacillus cereus AH621]
gi|228651425|gb|EEL07397.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
gi|228720388|gb|EEL71961.1| Cold shock-like protein cspB [Bacillus cereus AH603]
gi|228750722|gb|EEM00546.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
Length = 67
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MTVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETDGFKSLEEGQKVSFEIEDGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|295798071|emb|CAX68890.1| Cold-shock protein DNA-binding domain [uncultured bacterium]
Length = 73
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +KW+N KGYGF+ P+G G DVF+H SA+ G LT GQ V ++ V
Sbjct: 7 TKGKVKWFNNQKGYGFVNPDGEE--GRDVFVHYSAIQGDGYKTLTTGQDVEFELVTGPKG 64
Query: 63 GKYSAENLKLV 73
A+N+ +
Sbjct: 65 D--MAQNVVKI 73
>gi|197117042|ref|YP_002137469.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
gi|197086402|gb|ACH37673.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
Length = 66
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + G DVF+H S++ G +L EG VT+D VQ
Sbjct: 1 MANGVVKWFNDAKGFGFIEQDN----GVDVFVHFSSIQGDGFKSLVEGDSVTFDVVQGAK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|149374597|ref|ZP_01892371.1| cold-shock DNA-binding domain family protein [Marinobacter
algicola DG893]
gi|149361300|gb|EDM49750.1| cold-shock DNA-binding domain family protein [Marinobacter
algicola DG893]
Length = 68
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFIT E SG DVF+H SA+ G L EGQ V +
Sbjct: 4 TTGTVKFFNEAKGFGFITRE----SGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTDGQKG 59
Query: 63 GKYSAENLKLV 73
AEN+ V
Sbjct: 60 --PQAENVVAV 68
>gi|302386621|ref|YP_003822443.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
gi|302197249|gb|ADL04820.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
Length = 65
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V
Sbjct: 2 KGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLDEGAAVEFDVVDGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVTKI 65
>gi|157372097|ref|YP_001480086.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|157323861|gb|ABV42958.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
Length = 70
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ S+ L EGQ V +
Sbjct: 6 TGLVKWFNADKGFGFITPQD---GSKDVFVHFSAIQSSDFKTLDEGQKVEFSIENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|116051280|ref|YP_789888.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14]
gi|152985784|ref|YP_001347238.1| cold acclimation protein B [Pseudomonas aeruginosa PA7]
gi|254241955|ref|ZP_04935277.1| cold acclimation protein B [Pseudomonas aeruginosa 2192]
gi|296388237|ref|ZP_06877712.1| cold acclimation protein B [Pseudomonas aeruginosa PAb1]
gi|313108607|ref|ZP_07794608.1| cold acclimation protein B [Pseudomonas aeruginosa 39016]
gi|115586501|gb|ABJ12516.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14]
gi|126195333|gb|EAZ59396.1| cold acclimation protein B [Pseudomonas aeruginosa 2192]
gi|150960942|gb|ABR82967.1| cold acclimation protein B [Pseudomonas aeruginosa PA7]
gi|310881110|gb|EFQ39704.1| cold acclimation protein B [Pseudomonas aeruginosa 39016]
Length = 69
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG+D+F+H ++ G +L EGQ V++ V
Sbjct: 4 RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 60 G--LQADEVQVI 69
>gi|229178110|ref|ZP_04305481.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
gi|228605240|gb|EEK62690.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
Length = 65
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L +GQ V++D + +
Sbjct: 2 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGDGYKALEDGQEVSFDITEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|229028904|ref|ZP_04185005.1| Cold shock protein cspB [Bacillus cereus AH1271]
gi|229171874|ref|ZP_04299443.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|210077339|gb|ACJ06956.1| cold shock protein [Bacillus thuringiensis serovar azorensis]
gi|228611584|gb|EEK68837.1| Cold shock protein cspB [Bacillus cereus MM3]
gi|228732475|gb|EEL83356.1| Cold shock protein cspB [Bacillus cereus AH1271]
Length = 67
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+++ +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETEGFKSLEEGQKVSFEIEDGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|238792393|ref|ZP_04636027.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
gi|238728319|gb|EEQ19839.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
Length = 72
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y Q+
Sbjct: 7 KTGQVKWFNESKGFGFIEQHD---GGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 62
Query: 63 GKYSAENLKL 72
G +A + L
Sbjct: 63 GPAAANVVAL 72
>gi|228990713|ref|ZP_04150678.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442]
gi|228996815|ref|ZP_04156449.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17]
gi|229004492|ref|ZP_04162232.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4]
gi|228756753|gb|EEM06058.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4]
gi|228762876|gb|EEM11789.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17]
gi|228769239|gb|EEM17837.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442]
Length = 65
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H +A+ G L EGQ V++D V+ +
Sbjct: 2 QGKVKWFNNEKGFGFIEIE----GADDVFVHFTAIQGEGYKALEEGQEVSFDIVEGNRG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQAANVVKL 65
>gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 164
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFIT + D F+H SAV +GL L EG + +D + D
Sbjct: 96 ATGTVKFFNSMKGFGFITRDD---GQPDAFVHISAVERSGLRELNEGDKLEFDL-EVDRR 151
Query: 63 GKYSAENL 70
GK+SA NL
Sbjct: 152 GKHSAVNL 159
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K++N KG+GFI E G+DVF+H SAV AGL L EGQ + ++ V D G
Sbjct: 10 KGVVKFFNAQKGFGFIQRED---GGEDVFVHISAVERAGLEGLAEGQQLQFNLV--DRGG 64
Query: 64 KYSAENLKLV 73
K SA +L++V
Sbjct: 65 KISAADLQVV 74
>gi|332993980|gb|AEF04035.1| putative Cold shock-like protein [Alteromonas sp. SN2]
Length = 70
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GF+T +G G DVF+H ++AS G L+EGQ V++ Q
Sbjct: 6 NGTVKWFNEDKGFGFLTQDG---GGKDVFVHFRSIASDGFKTLSEGQAVSFSVEQGQKG- 61
Query: 64 KYSAENLKLV 73
A N+ ++
Sbjct: 62 -LQAANVVVL 70
>gi|70731986|ref|YP_261728.1| temperature acclimation protein b, fragment-like protein
[Pseudomonas fluorescens Pf-5]
gi|68346285|gb|AAY93891.1| temperature acclimation protein b [Pseudomonas fluorescens Pf-5]
Length = 70
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--MQADEVQ 67
>gi|299144112|ref|ZP_07037192.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518597|gb|EFI42336.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 65
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFIT E G DVF H S + G L EGQ V +D V+ +
Sbjct: 2 KGKVKWFNGEKGFGFITAED----GKDVFAHFSQIQKEGFKTLEEGQDVEFDVVEKEKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -PQAENIVIL 65
>gi|260494795|ref|ZP_05814925.1| cold shock domain-containing protein CspD [Fusobacterium sp.
3_1_33]
gi|260197957|gb|EEW95474.1| cold shock domain-containing protein CspD [Fusobacterium sp.
3_1_33]
Length = 71
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ +
Sbjct: 7 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 61
Query: 64 KYSAENLKLVP 74
A N+ ++
Sbjct: 62 -PQASNIVIIK 71
>gi|167034479|ref|YP_001669710.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida GB-1]
gi|166860967|gb|ABY99374.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
Length = 70
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAERGQK 60
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 61 G--MQAAQVRP 69
>gi|15896242|ref|NP_349591.1| cold shock protein [Clostridium acetobutylicum ATCC 824]
gi|15026046|gb|AAK80931.1|AE007796_1 Cold shock protein [Clostridium acetobutylicum ATCC 824]
gi|325510397|gb|ADZ22033.1| Cold shock protein [Clostridium acetobutylicum EA 2018]
Length = 65
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFIT T+ G+DVF+H S + G L EGQ V +D +
Sbjct: 3 GTVKWFNSQKGYGFIT----TQEGNDVFVHYSGIKDNGFKTLEEGQEVEFDLTEGQKG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 EQAVNV 62
>gi|229591242|ref|YP_002873361.1| putative cold-shock protein [Pseudomonas fluorescens SBW25]
gi|229363108|emb|CAY50116.1| putative cold-shock protein [Pseudomonas fluorescens SBW25]
Length = 91
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V+++ +Q
Sbjct: 8 GKVKWFNNAKGYGFIIEDGKS---EDLFAHFSAIIMDGYKTLKAGQAVSFEIIQGPKG-- 62
Query: 65 YSAENLKLVPK 75
A N+ V +
Sbjct: 63 LHAVNIDTVKE 73
>gi|225390644|ref|ZP_03760368.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme
DSM 15981]
gi|225043262|gb|EEG53508.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme
DSM 15981]
Length = 65
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V
Sbjct: 2 KGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLDEGAAVEFDVVNGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVTKL 65
>gi|254244622|ref|ZP_04937944.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192]
gi|37955684|gb|AAP22523.1| CspA [Pseudomonas aeruginosa]
gi|126198000|gb|EAZ62063.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192]
Length = 69
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG DVF+H + ++G +L EGQ V++
Sbjct: 4 RQTGTVKWFNEVKGFGFITPE----SGADVFVHFRQIEASGYKSLDEGQRVSFFVTAGAK 59
Query: 62 NGKYSAENLKLV 73
AE ++ +
Sbjct: 60 G--PQAEQVQAL 69
>gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315442733|ref|YP_004075612.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
gi|145214785|gb|ABP44189.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
PYR-GCK]
gi|315261036|gb|ADT97777.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
Length = 136
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGRVKWYDAEKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +KL+ +
Sbjct: 56 G--PQALQVKLIDPPPS 70
>gi|325916970|ref|ZP_08179212.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
gi|325536821|gb|EGD08575.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
Length = 69
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 7 GTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG-- 60
Query: 65 YSAENLKLV 73
A+ ++ V
Sbjct: 61 MQADQVQAV 69
>gi|206890727|ref|YP_002249771.1| hypothetical protein THEYE_A1982 [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742665|gb|ACI21722.1| conserved domain protein [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 67
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N KG+GFI + G DVF+H +++ G L +G V +D V+ D
Sbjct: 1 MAFEGRVKWFNESKGFGFIQQD----GGQDVFVHYTSIKGDGFKTLKQGDRVKFDVVEGD 56
Query: 61 ANGKYSAENLKLV 73
K A N++ V
Sbjct: 57 RGPK--AVNVEKV 67
>gi|312897558|ref|ZP_07756978.1| major cold shock protein CspA [Megasphaera micronuciformis F0359]
gi|310621410|gb|EFQ04950.1| major cold shock protein CspA [Megasphaera micronuciformis F0359]
Length = 65
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V
Sbjct: 2 QGKVKWFSAEKGYGFIERED----GGDVFVHFSAIQEDGFKSLTEGQEVEFDIVDGARG- 56
Query: 64 KYSAENLKL 72
A N+
Sbjct: 57 -PQAANVTK 64
>gi|62180569|ref|YP_216986.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62128202|gb|AAX65905.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322715045|gb|EFZ06616.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 136
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+NP+KG+GFITP+ DVF+H SA+ S L E Q V + Q
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGQK 60
>gi|295698317|ref|YP_003602972.1| hypothetical protein RIEPE_0091 [Candidatus Riesia pediculicola
USDA]
gi|291157076|gb|ADD79521.1| conserved domain protein [Candidatus Riesia pediculicola USDA]
Length = 69
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFI+PE DVF+H +++ S G LTEGQ V +D +
Sbjct: 5 KGSVKWFNEAKGFGFISPED---GSKDVFVHFTSIQSEGFKTLTEGQKVEFDVANGEKG- 60
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 61 -PSAINVVAI 69
>gi|262373766|ref|ZP_06067044.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262311519|gb|EEY92605.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 71
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S ++++G L EGQ+V + Q
Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEISNSGFKTLFEGQMVEFSIAQGQKG- 62
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 63 -PNAVNITAL 71
>gi|260583587|ref|ZP_05851335.1| cold shock protein [Granulicatella elegans ATCC 700633]
gi|260158213|gb|EEW93281.1| cold shock protein [Granulicatella elegans ATCC 700633]
Length = 70
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ +KGYGFI+ + +D+F+H + + S G L EGQ V ++ Q
Sbjct: 1 MKKGIVKWFSNEKGYGFISVTD---TDEDIFVHFTGIISEGFKTLKEGQRVEFEIAQGAH 57
Query: 62 NGKYSAENLKLV 73
A ++ +V
Sbjct: 58 G--LQATHVSVV 67
>gi|238898407|ref|YP_002924088.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466166|gb|ACQ67940.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 72
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+GS+KW+N KG+GFITP DVF+H SA+ S+G L EGQ+V +
Sbjct: 6 QKGSVKWFNESKGFGFITPAD---GSKDVFVHFSAIDSSGFKTLGEGQMVEFSIENGAKG 62
Query: 63 GKYSAENLKLVP 74
SA N+ ++
Sbjct: 63 --PSAANVSVIS 72
>gi|87200599|ref|YP_497856.1| cold-shock DNA-binding protein family protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87136280|gb|ABD27022.1| cold-shock DNA-binding protein family [Novosphingobium
aromaticivorans DSM 12444]
Length = 68
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKGYGFI P+G D F+H SAV +G+ L + Q V Y+ + D
Sbjct: 1 MPVGTVKFFNVDKGYGFIAPDG---GAPDNFVHISAVERSGMATLDKDQRVQYEL-ETDK 56
Query: 62 NGKYSAENLK 71
GK SA NL+
Sbjct: 57 RGKTSAVNLQ 66
>gi|320540138|ref|ZP_08039793.1| putative cold-shock DNA-binding domain-containing protein
[Serratia symbiotica str. Tucson]
gi|320029804|gb|EFW11828.1| putative cold-shock DNA-binding domain-containing protein
[Serratia symbiotica str. Tucson]
Length = 69
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW+N KG+GFITPE DVF+H SA+AS G L EGQ V ++
Sbjct: 5 KGSVKWFNESKGFGFITPED---GSKDVFVHFSAIASNGFKTLAEGQHVEFEITNGAKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAANV 66
>gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB [Mycobacterium marinum M]
gi|183177954|gb|ACC43064.1| cold shock-like protein B CspB [Mycobacterium marinum M]
Length = 134
Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDSDKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLLDPPPS 70
>gi|257056878|ref|YP_003134710.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
gi|256586750|gb|ACU97883.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
DSM 43017]
Length = 67
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI P+G G DVF+H S + G +L +GQ V + Q
Sbjct: 1 MAEGTVKWFNSEKGFGFIAPDG---GGADVFVHYSEIDGRGFRSLEDGQRVVFTVGQGAK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PQATGVRTL 67
>gi|228990213|ref|ZP_04150183.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
gi|228996304|ref|ZP_04155949.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|229003971|ref|ZP_04161777.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
gi|228757340|gb|EEM06579.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
gi|228763496|gb|EEM12398.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
gi|228769576|gb|EEM18169.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
Length = 67
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI G+DVF+H SA+ + G +L EG+ V+++ +
Sbjct: 1 MTVTGQVKWFNNEKGFGFIEV----PGGNDVFVHFSAITTEGFKSLEEGEKVSFEIEDGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|145300857|ref|YP_001143698.1| major cold shock protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|330828121|ref|YP_004391073.1| Cold shock-like protein cspI [Aeromonas veronii B565]
gi|142853629|gb|ABO91950.1| major cold shock protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|328803257|gb|AEB48456.1| Cold shock-like protein cspI [Aeromonas veronii B565]
Length = 70
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N +KG+GFI+P DVF+H SA+ S L EGQ V + Q
Sbjct: 6 TGTVKFFNAEKGFGFISPAD---GSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|88860126|ref|ZP_01134765.1| nucleic acid-binding domain, cold-shock RNA chaperone
[Pseudoalteromonas tunicata D2]
gi|88818120|gb|EAR27936.1| nucleic acid-binding domain, cold-shock RNA chaperone
[Pseudoalteromonas tunicata D2]
Length = 72
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI +G +D+F H S + G L GQ VT++
Sbjct: 1 MACGKVKWFNNAKGFGFIVADGRE---EDIFAHFSTIVMDGYKTLKAGQDVTFELQAGPK 57
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 58 G--LHATNIEP 66
>gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
gi|262084564|gb|ACY20532.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
Length = 155
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF+ E G+DV++ SA+ G+ L GQ V +
Sbjct: 20 PTGKVKWYDAEKGFGFLAQED----GEDVYVRSSAL-PDGVEGLKPGQRVEFGMAAGRRG 74
Query: 63 GKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 75 --PQALSVTVLEPAPS 88
>gi|229592287|ref|YP_002874406.1| major cold shock protein [Pseudomonas fluorescens SBW25]
gi|229364153|emb|CAY51796.1| major cold shock protein [Pseudomonas fluorescens SBW25]
Length = 70
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENL 70
A+ +
Sbjct: 60 G--MQADEV 66
>gi|311693752|gb|ADP96625.1| cold shock, CspA [marine bacterium HP15]
Length = 76
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT E SG DVF+H SA+ G L EGQ V + Q
Sbjct: 13 TGNVKFFNEAKGFGFITRE----SGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 67
Query: 64 KYSAENLKLV 73
AEN+ +
Sbjct: 68 -PQAENVVAL 76
>gi|307823754|ref|ZP_07653982.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307735048|gb|EFO05897.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 71
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G +KW+N DKG+GFI +SG DVF+H + ++ G +L EGQ V + Q
Sbjct: 4 MTTGIVKWFNSDKGFGFIE----QQSGPDVFVHFQQINNSGGYKSLDEGQKVQFSVAQGQ 59
Query: 61 ANGKYSAENLKLVP 74
AEN+ ++
Sbjct: 60 KG--PQAENVSVIS 71
>gi|90408760|ref|ZP_01216906.1| Cold shock protein [Psychromonas sp. CNPT3]
gi|90310140|gb|EAS38279.1| Cold shock protein [Psychromonas sp. CNPT3]
Length = 68
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI E G DVF H SA+AS G L EGQ V + Q
Sbjct: 6 GTVKWFNESKGFGFIEQEN----GPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG-- 59
Query: 65 YSAENLKLV 73
+AEN+ +
Sbjct: 60 PNAENIVAI 68
>gi|322421190|ref|YP_004200413.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
M18]
gi|320127577|gb|ADW15137.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
Length = 66
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E G DVF+H S++ G +L EG VT++ VQ
Sbjct: 1 MANGVVKWFNDAKGFGFIEQEN----GGDVFVHFSSIQGDGFKSLAEGDSVTFEVVQGAK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--PQAANV 63
>gi|255659158|ref|ZP_05404567.1| conserved domain protein [Mitsuokella multacida DSM 20544]
gi|260848608|gb|EEX68615.1| conserved domain protein [Mitsuokella multacida DSM 20544]
Length = 66
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P+KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 3 GKVKWFSPEKGYGFIARE----GGDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEGARG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQAANV 62
>gi|82702264|ref|YP_411830.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
multiformis ATCC 25196]
gi|82410329|gb|ABB74438.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
ATCC 25196]
Length = 71
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
+ G++KW+N KG+GFITP+ E +D+F H SA+ + G L EGQ VT++
Sbjct: 1 MATGTVKWFNGTKGFGFITPD---EGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEIT 57
Query: 58 QNDANGKYSAENLK 71
A N++
Sbjct: 58 NGPKGK--QASNIQ 69
>gi|21224260|ref|NP_630039.1| cold-shock domain-containing protein [Streptomyces coelicolor
A3(2)]
gi|256784655|ref|ZP_05523086.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
gi|289768539|ref|ZP_06527917.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
gi|2815334|emb|CAA16458.1| cold-shock domain protein [Streptomyces coelicolor A3(2)]
gi|91199666|emb|CAI78021.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|96771713|emb|CAI78295.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|117164258|emb|CAJ87800.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|126347370|emb|CAJ89078.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
gi|289698738|gb|EFD66167.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
Length = 67
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|160938316|ref|ZP_02085671.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC
BAA-613]
gi|158438689|gb|EDP16446.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC
BAA-613]
Length = 65
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V
Sbjct: 2 KGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLDEGAEVEFDVVNGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVTKL 65
>gi|83648221|ref|YP_436656.1| cold shock protein [Hahella chejuensis KCTC 2396]
gi|83636264|gb|ABC32231.1| Cold shock protein [Hahella chejuensis KCTC 2396]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H SA+ S G LTEGQ V + +
Sbjct: 6 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSAIVSNGFKTLTEGQQVEFTVAKGPKG- 60
Query: 64 KYSAENL 70
AEN+
Sbjct: 61 -PQAENI 66
>gi|262372339|ref|ZP_06065618.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262312364|gb|EEY93449.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 73
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + G DVF H S +A+ G L EGQ V +D +Q
Sbjct: 6 NGTVKWFNETKGFGFIQSDN----GQDVFAHYSEIANNGFKTLFEGQRVKFDVMQGKKG- 60
Query: 64 KYSAENLKLV 73
A N+ ++
Sbjct: 61 -LQASNISVL 69
>gi|237799875|ref|ZP_04588336.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022730|gb|EGI02787.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 70
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--LQADEVQ 67
>gi|167467804|ref|ZP_02332508.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
Length = 70
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|330994825|ref|ZP_08318747.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
gi|329758086|gb|EGG74608.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
Length = 229
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ V+
Sbjct: 165 RGTVKWYNAAKGFGFITPEN---GGKDIFVHASALERSGLSGLTEGQTANVQVVEGQKGP 221
Query: 64 KYSAENL 70
+ +A ++
Sbjct: 222 EAAALSV 228
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ DVFLH +A+ G + G + Q +
Sbjct: 60 TVKWFNSEKGFGFVELSD---GSGDVFLHANALNPTGHATVAPGTTLVVQIGQGPKGRQV 116
Query: 66 SAE 68
+A
Sbjct: 117 AAV 119
>gi|317493065|ref|ZP_07951489.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919187|gb|EFV40522.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 70
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP+ D+F+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPDN---GSKDIFVHFSAIQSTAFKTLDEGQRVEFTVENGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAANVVAL 70
>gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54014114|dbj|BAD55484.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 138
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ + G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGRVKWYDVEKGFGFLSQD----EGEDVYVRSSAL-PEGVEGLKPGQRVEFGMAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIEAPPS 70
>gi|37527652|ref|NP_930996.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787087|emb|CAE16162.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 71
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI+P+ DVF+H SA+ S L EGQ V++
Sbjct: 6 TGSVKWFNNDKGFGFISPKD---GSKDVFVHYSAIQSNNFKTLEEGQEVSFSIENGAKG- 61
Query: 64 KYSAENLKLVP 74
SA N+ ++
Sbjct: 62 -PSAVNVIVLS 71
>gi|77460616|ref|YP_350123.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
gi|77384619|gb|ABA76132.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
Length = 70
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENL 70
A+ +
Sbjct: 60 G--MQADEV 66
>gi|307944227|ref|ZP_07659568.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
TrichSKD4]
gi|307772573|gb|EFO31793.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
TrichSKD4]
Length = 289
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +K++ DKG+GFITP+ E DVF+H SAV +G+ L GQ V+++ +
Sbjct: 210 RQNGIVKFFKSDKGFGFITPD---EGDADVFVHISAVERSGMTTLDSGQRVSFETEPDRR 266
Query: 62 NGKYSAENLKLVPK 75
A NL+ + +
Sbjct: 267 GKGPKAVNLQELSE 280
>gi|257468871|ref|ZP_05632965.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
gi|317063120|ref|ZP_07927605.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
gi|313688796|gb|EFS25631.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
Length = 65
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G D+F H S + G L E + VTYD ++
Sbjct: 2 KGTVKWFNQEKGFGFITGED----GKDIFAHFSQIQKDGFKTLNENEEVTYDVIEGQKG- 56
Query: 64 KYSAENLKL 72
A N+K+
Sbjct: 57 -PQAANIKV 64
>gi|119944064|ref|YP_941744.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119862668|gb|ABM02145.1| cold shock protein E (CspE) [Psychromonas ingrahamii 37]
Length = 68
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI SG DVF H SA++S G L EGQ V + Q
Sbjct: 5 QGTVKWFNESKGFGFIE----QASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKG- 59
Query: 64 KYSAENLKLV 73
+AEN+ +
Sbjct: 60 -PNAENIVAI 68
>gi|15598462|ref|NP_251956.1| cold acclimation protein B [Pseudomonas aeruginosa PAO1]
gi|107102797|ref|ZP_01366715.1| hypothetical protein PaerPA_01003865 [Pseudomonas aeruginosa
PACS2]
gi|218890541|ref|YP_002439405.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58]
gi|254236229|ref|ZP_04929552.1| cold acclimation protein B [Pseudomonas aeruginosa C3719]
gi|2493770|sp|P95459|CSPA_PSEAE RecName: Full=Major cold shock protein CspA
gi|9949391|gb|AAG06654.1|AE004749_3 cold acclimation protein B [Pseudomonas aeruginosa PAO1]
gi|1778825|gb|AAB40922.1| major cold shock protein CspA [Pseudomonas aeruginosa PAO1]
gi|126168160|gb|EAZ53671.1| cold acclimation protein B [Pseudomonas aeruginosa C3719]
gi|218770764|emb|CAW26529.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG+D+F+H ++ G +L EGQ V++ V
Sbjct: 4 RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 60 G--LQADEVQVV 69
>gi|307295485|ref|ZP_07575321.1| cold-shock DNA-binding domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878524|gb|EFN09744.1| cold-shock DNA-binding domain protein [Sphingobium
chlorophenolicum L-1]
Length = 68
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKGYGFI PE G+D F+H SAV AG+ L + Q ++Y+ + D
Sbjct: 1 MPIGTVKFFNADKGYGFIAPED---GGNDSFVHISAVERAGMVTLQKDQRLSYEV-EMDR 56
Query: 62 NGKYSAENLK 71
GK SA NL+
Sbjct: 57 RGKQSAVNLQ 66
>gi|258517067|ref|YP_003193289.1| cold-shock DNA-binding domain-containing protein
[Desulfotomaculum acetoxidans DSM 771]
gi|257780772|gb|ACV64666.1| cold-shock DNA-binding domain protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 65
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYGFI E G DVF+H SA+ S G L EGQ V +D V+
Sbjct: 3 GKVKWFSAEKGYGFIERED----GGDVFVHFSAIQSEGFKTLEEGQEVEFDIVEGARG-- 56
Query: 65 YSAENLKLV 73
A N+ V
Sbjct: 57 PQAANVMKV 65
>gi|293604627|ref|ZP_06687029.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
43553]
gi|292816958|gb|EFF76037.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
43553]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKGYGFI+PE G D+F H S + G +L E Q V++ Q
Sbjct: 4 ETGIVKWFNNDKGYGFISPE---LGGKDLFAHYSEIQGDGHKSLEENQRVSFVAGQGQKG 60
Query: 63 GKYSAENLKLV 73
A +K +
Sbjct: 61 --PQATMIKPI 69
>gi|19703863|ref|NP_603425.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|254304125|ref|ZP_04971483.1| cold shock protein CspC [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|256844890|ref|ZP_05550348.1| cold shock domain-containing protein CspD [Fusobacterium sp.
3_1_36A2]
gi|294785827|ref|ZP_06751115.1| cold shock protein [Fusobacterium sp. 3_1_27]
gi|296329383|ref|ZP_06871883.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19714023|gb|AAL94724.1| Cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|148324317|gb|EDK89567.1| cold shock protein CspC [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|256718449|gb|EEU32004.1| cold shock domain-containing protein CspD [Fusobacterium sp.
3_1_36A2]
gi|294487541|gb|EFG34903.1| cold shock protein [Fusobacterium sp. 3_1_27]
gi|296153503|gb|EFG94321.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 71
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ +
Sbjct: 7 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 61
Query: 64 KYSAENLKLVP 74
A N+ ++
Sbjct: 62 -PQASNIVVIK 71
>gi|313901283|ref|ZP_07834770.1| cold shock protein CspB [Clostridium sp. HGF2]
gi|312953891|gb|EFR35572.1| cold shock protein CspB [Clostridium sp. HGF2]
Length = 65
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G D+F+H S + G +L EGQ VT+D V +D
Sbjct: 2 KGKVKWFNAEKGYGFINGED----GKDIFVHYSHIQQEGYKSLEEGQEVTFDTVDSDKG- 56
Query: 64 KYSAENLKL 72
A N++
Sbjct: 57 -LQARNVEK 64
>gi|304391865|ref|ZP_07373807.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
gi|303296094|gb|EFL90452.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K+YN KG+GFI P+ G DVF+H +A+ GL L+EGQ V+++ +
Sbjct: 1 MTSGTVKFYNDTKGFGFIQPDD---GGKDVFVHATALERNGLTGLSEGQKVSFETDMDPR 57
Query: 62 NGKYSAENLKLVPKS 76
+GK + + + +
Sbjct: 58 SGKPA---VSKIEAA 69
>gi|262368477|ref|ZP_06061806.1| cold shock protein [Acinetobacter johnsonii SH046]
gi|262316155|gb|EEY97193.1| cold shock protein [Acinetobacter johnsonii SH046]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF H +AS+G L EGQ V++ Q
Sbjct: 6 TGTVKWFNETKGFGFIQQE----SGPDVFAHFREIASSGFKTLHEGQQVSFSIEQGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PNAVNIVAL 69
>gi|224367563|ref|YP_002601726.1| CspL [Desulfobacterium autotrophicum HRM2]
gi|223690279|gb|ACN13562.1| CspL [Desulfobacterium autotrophicum HRM2]
Length = 66
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ KG+GFI + G+DVF+H +A+ G L+EG+ V++D ND
Sbjct: 1 MAQGTVKWFSDKKGFGFIEQD----EGNDVFVHHTAIDMPGFKTLSEGERVSFDIEDNDR 56
Query: 62 NGKYSAENL 70
+A N+
Sbjct: 57 G--PAARNV 63
>gi|297191503|ref|ZP_06908901.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197722057|gb|EDY65965.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 67
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MASGVVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|148652145|ref|YP_001279238.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
sp. PRwf-1]
gi|148653967|ref|YP_001281060.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
sp. PRwf-1]
gi|148571229|gb|ABQ93288.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
gi|148573051|gb|ABQ95110.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI PE +G DVF H S +AS+G L EGQ V + Q
Sbjct: 6 KGTVKWFNEAKGFGFIAPE----TGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQGAKG- 60
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 61 -PQAHGITAI 69
>gi|77361881|ref|YP_341456.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Pseudoalteromonas haloplanktis
TAC125]
gi|77361882|ref|YP_341457.1| cold shock-like protein cspE, RNA chaperone, transcription
antiterminator, affects expression of rpoS and uspA
[Pseudoalteromonas haloplanktis TAC125]
gi|76876792|emb|CAI88014.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Pseudoalteromonas haloplanktis
TAC125]
gi|76876793|emb|CAI88015.1| Cold shock-like protein cspE, RNA chaperone, transcription
antiterminator, affects expression of rpoS and uspA
[Pseudoalteromonas haloplanktis TAC125]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI E SG DVF H SA+ S G L EGQ V + Q
Sbjct: 5 TTGSVKWFNEAKGFGFIEQE----SGADVFAHFSAIVSDGFKTLAEGQRVQFTVTQGQKG 60
Query: 63 GKYSAENL 70
AEN+
Sbjct: 61 --PQAENI 66
>gi|326560305|gb|EGE10693.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
7169]
gi|326562975|gb|EGE13254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
46P47B1]
gi|326563611|gb|EGE13863.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
103P14B1]
gi|326565318|gb|EGE15498.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
12P80B1]
gi|326566377|gb|EGE16527.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC1]
gi|326570186|gb|EGE20231.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC8]
gi|326570924|gb|EGE20948.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC7]
gi|326573218|gb|EGE23186.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
101P30B1]
gi|326575880|gb|EGE25803.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
CO72]
gi|326576345|gb|EGE26254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
O35E]
Length = 68
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +KW+N KG+GFI E +G+DVF+H A+ G +L EGQ V + D
Sbjct: 4 EQGVVKWFNDAKGFGFIQRE----TGEDVFVHFRAIQGEGYRSLKEGQAVEFVVTTGDKG 59
Query: 63 GKYSAENLKLV 73
AE + +
Sbjct: 60 --LQAEEVTKL 68
>gi|326386099|ref|ZP_08207723.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209324|gb|EGD60117.1| cold-shock DNA-binding protein family protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 80
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFI P+ E GDD F+H SAV +G+ L + Q V Y+ + D
Sbjct: 13 MAIGTVKFFNTDKGFGFIAPD---EGGDDSFVHISAVERSGMRTLLKDQRVKYEL-ETDK 68
Query: 62 NGKYSAENLKLV 73
GK +A NL++V
Sbjct: 69 RGKTAAVNLEIV 80
>gi|227551399|ref|ZP_03981448.1| CspC family cold shock transcriptional regulator [Enterococcus
faecium TX1330]
gi|293570497|ref|ZP_06681552.1| cold-shock protein [Enterococcus faecium E980]
gi|227179518|gb|EEI60490.1| CspC family cold shock transcriptional regulator [Enterococcus
faecium TX1330]
gi|291609443|gb|EFF38710.1| cold-shock protein [Enterococcus faecium E980]
Length = 79
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KGYGFI+ + + +++F+H +A+ G L E Q+V ++ ++ +
Sbjct: 5 TTGIVKWFDNKKGYGFISYDDT----EEIFVHFTAIEEEGFKTLEENQVVEFEIIEGNRG 60
Query: 63 GKYSAENLKL 72
A ++K
Sbjct: 61 --TQAAHVKK 68
>gi|21231725|ref|NP_637642.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768149|ref|YP_242911.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991286|ref|YP_001903296.1| cold shock protein [Xanthomonas campestris pv. campestris str.
B100]
gi|21113428|gb|AAM41566.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573481|gb|AAY48891.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733046|emb|CAP51244.1| cold shock protein [Xanthomonas campestris pv. campestris]
Length = 69
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ V++ VQ
Sbjct: 4 RQNGVVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVSFVAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADQVQAV 69
>gi|50955729|ref|YP_063017.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952211|gb|AAT89912.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 73
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDA 61
++KW+N KG+GFI P+ DVF+H S +A+ G NL E Q V YD Q
Sbjct: 7 PTSTVKWFNSKKGFGFIAPDD---GSTDVFVHYSEIAATGGYRNLDENQKVEYDLAQGPK 63
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 64 G--PQAANIRP 72
>gi|119477239|ref|ZP_01617475.1| cold-shock DNA-binding domain family protein [marine gamma
proteobacterium HTCC2143]
gi|119449602|gb|EAW30840.1| cold-shock DNA-binding domain family protein [marine gamma
proteobacterium HTCC2143]
Length = 68
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+NPDKG+GFITPE G D+F+H S + G L +GQ V ++ Q
Sbjct: 1 MSKGTVKWFNPDKGFGFITPED---GGKDLFVHHSEIQSGGGFATLNDGQDVEFEVGQGQ 57
Query: 61 ANGKYSAENLKLV 73
A + +
Sbjct: 58 KG--PCANKVVPL 68
>gi|26987944|ref|NP_743369.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
gi|24982656|gb|AAN66833.1|AE016312_4 cold-shock domain family protein [Pseudomonas putida KT2440]
Length = 91
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 25 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 79
Query: 64 KYSAENLKLV 73
AE++ V
Sbjct: 80 -LQAEDVVAV 88
>gi|88857116|ref|ZP_01131759.1| Cold shock protein [Pseudoalteromonas tunicata D2]
gi|88820313|gb|EAR30125.1| Cold shock protein [Pseudoalteromonas tunicata D2]
Length = 69
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI SG DVF H SA++ G L EGQ V + Q
Sbjct: 5 TTGSVKWFNEAKGFGFIE----QASGPDVFAHFSAISGDGFKTLAEGQRVQFSVSQGQKG 60
Query: 63 GKYSAENL 70
A+N+
Sbjct: 61 --PQADNI 66
>gi|27550093|gb|AAO18076.1| unknown [Photorhabdus luminescens]
Length = 71
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI+P+ DVF+H SA+ S L EGQ V++
Sbjct: 6 TGSVKWFNNDKGFGFISPKD---GSKDVFVHYSAIQSNNFKTLEEGQEVSFSIENGAKG- 61
Query: 64 KYSAENLKLVP 74
SA N+ ++
Sbjct: 62 -PSAVNVIVLS 71
>gi|85717084|ref|ZP_01048045.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85696122|gb|EAQ34019.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFI PE G DVF+H SAV AG +L EG V+Y+ V N GK
Sbjct: 7 GTVKWFNGQKGYGFIEPES---GGKDVFVHISAVEKAGFTSLAEGAKVSYEVVMN--RGK 61
Query: 65 YSAENLKL 72
SAENL++
Sbjct: 62 ESAENLRI 69
>gi|281336080|gb|ADA62629.1| Cold shock protein CspC [Staphylococcus epidermidis]
Length = 66
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ DKG+GFI + G+DVF+H S +A G +L EGQ V +D V+
Sbjct: 1 MNNGTVKWFHADKGFGFIERDN----GNDVFVHYSVIAGEGYKSLEEGQNVDFDIVEGQR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--EQATNVVV 65
>gi|227549517|ref|ZP_03979566.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM
44291]
gi|227078394|gb|EEI16357.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM
44291]
Length = 67
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N DKG+GFI P DVF+H S + +G NL E Q V Y +
Sbjct: 1 MAQGTVKWFNGDKGFGFIAPND---GSTDVFVHFSEIQGSGYRNLEENQQVEYVVGEGAK 57
Query: 62 NGKYSAENLKLV 73
A+ + +
Sbjct: 58 G--PQAQQVVAL 67
>gi|15644431|ref|NP_229483.1| cold shock protein [Thermotoga maritima MSB8]
gi|6225214|sp|O54310|CSP_THEMA RecName: Full=Cold shock-like protein
gi|16974798|pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From
The Hyperthermophilic Bacterium Thermotoga Maritima
gi|4982259|gb|AAD36750.1|AE001809_2 cold shock protein [Thermotoga maritima MSB8]
gi|2894098|emb|CAA72105.1| cold shock protein [Thermotoga maritima MSB8]
Length = 66
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ +
Sbjct: 2 RGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG- 56
Query: 64 KYSAENLKLVP 74
A ++K+V
Sbjct: 57 -PQAAHVKVVE 66
>gi|260774268|ref|ZP_05883183.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
gi|260611229|gb|EEX36433.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+TP+ G DVF+H +++AS G L EGQ V+++ Q
Sbjct: 6 TGSVKWFNETKGFGFLTPDN---GGSDVFVHFNSIASEGFKTLAEGQKVSFNVEQGKKG- 61
Query: 64 KYSAENLKLV 73
AE + ++
Sbjct: 62 -PQAEQVTVL 70
>gi|90019067|gb|ABD84187.1| unknown [Yersinia sp. MH-1]
Length = 77
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP G DVF+H SA+ S L EGQ V + +N A G
Sbjct: 13 TGLVKWFDAGKGFGFITPAD---GGKDVFVHFSAIQSNDFKTLDEGQRVEFSI-ENGAKG 68
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 69 PSAANVVAL 77
>gi|94499152|ref|ZP_01305690.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp.
RED65]
gi|94428784|gb|EAT13756.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp.
RED65]
Length = 68
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI + G DVF+H SA+ +G L EGQ VT Q
Sbjct: 5 TGTVKWFNDEKGFGFIQQD----GGKDVFVHYSAIQGSGRRTLAEGQQVTMTVTQGQKG- 59
Query: 64 KYSAENLKL 72
AE+++
Sbjct: 60 -LQAEDVEP 67
>gi|119718152|ref|YP_925117.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
JS614]
gi|119538813|gb|ABL83430.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
Length = 131
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GF++ E G DV++ A+ AG +L G V + Q
Sbjct: 1 MPTGKVKWFDAEKGFGFLSQEN----GPDVYVRSEAL-PAGTSSLKAGTRVEFGIAQGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++++ ++
Sbjct: 56 GD--QALQVRILDAPAS 70
>gi|125602073|gb|EAZ41398.1| hypothetical protein OsJ_25919 [Oryza sativa Japonica Group]
Length = 91
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GFITP+ G+D+F+H+S++ S G +L +G +V + + +G
Sbjct: 7 KGTVKWFDATKGFGFITPDD---GGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62
Query: 64 KYSAEN 69
+ A +
Sbjct: 63 RTKAVD 68
>gi|309777854|ref|ZP_07672800.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914415|gb|EFP60209.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 65
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KGYGFI E G D+F+H S + G +L EGQ VT+D V +D
Sbjct: 2 KGKVKWFNAEKGYGFINGED----GKDIFVHYSHIQQEGYKSLEEGQEVTFDAVDSDKG- 56
Query: 64 KYSAENLKL 72
A N++
Sbjct: 57 -LQARNVEK 64
>gi|239627541|ref|ZP_04670572.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239517687|gb|EEQ57553.1| cold-shock DNA-binding domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 65
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V ++ V
Sbjct: 2 KGTVKWFNNQKGYGFISDE----QGNDVFVHYSGLNMDGFKSLDEGAEVEFEVVNGAKG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -PQATNVTRL 65
>gi|158522029|ref|YP_001529899.1| cold-shock DNA-binding domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158510855|gb|ABW67822.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans
Hxd3]
Length = 66
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI + S DVF+H SA+ G L+EG V+++ D
Sbjct: 1 MADGIVKWFNEKKGFGFIEVDESN----DVFVHYSAITMPGFKTLSEGDRVSFEIEDTDR 56
Query: 62 NGKYSAENL 70
+A+N+
Sbjct: 57 G--PAAKNV 63
>gi|330810595|ref|YP_004355057.1| transcription factor, Csd family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378703|gb|AEA70053.1| putative Transcription factor, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 60
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 61 G--MQAAQVRP 69
>gi|294653627|gb|ADF28646.1| cold shock protein [Bacillus subtilis]
Length = 68
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N +KG+GFI E G DVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 7 KVKWFNSEKGFGFIEVE----GGSDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRG--P 60
Query: 66 SAENLKL 72
A N+
Sbjct: 61 QAANVTK 67
>gi|66044345|ref|YP_234186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|302188384|ref|ZP_07265057.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae 642]
gi|63255052|gb|AAY36148.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|330950944|gb|EGH51204.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
gi|330969232|gb|EGH69298.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--MQADEVQ 67
>gi|239809492|gb|ACS26216.1| unknown [uncultured bacterium]
Length = 69
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFI E G DVF+H SA+ AG L EGQ V + Q
Sbjct: 6 TGTVKFFNEAKGFGFIQREN----GPDVFVHFSAIQGAGFKTLAEGQKVQFTVGQGQKG- 60
Query: 64 KYSAENL 70
AEN+
Sbjct: 61 -PQAENV 66
>gi|261346879|ref|ZP_05974523.1| conserved domain protein [Providencia rustigianii DSM 4541]
gi|282565065|gb|EFB70600.1| conserved domain protein [Providencia rustigianii DSM 4541]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S L EGQ V + +N A G
Sbjct: 6 TGLVKWFNSDKGFGFISPTD---GSKDVFVHFSAIQSDNFRTLDEGQKVEFTI-ENGAKG 61
Query: 64 KYSAENLKL 72
+A + +
Sbjct: 62 PAAANVVAI 70
>gi|212710131|ref|ZP_03318259.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens
DSM 30120]
gi|212687338|gb|EEB46866.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens
DSM 30120]
Length = 81
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI+P DVF+H SA+ S L EGQ V++ +N A G
Sbjct: 17 TGLVKWFNESKGFGFISPAD---GSKDVFVHFSAIQSDSFKTLNEGQKVSFSV-ENGAKG 72
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 73 PAAANVVAL 81
>gi|116749630|ref|YP_846317.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116698694|gb|ABK17882.1| cold-shock DNA-binding protein family [Syntrophobacter
fumaroxidans MPOB]
Length = 66
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI T SG DVF+H S++ G L+EGQ VT++ +
Sbjct: 1 MAEGRVKWFNDQKGYGFIE----TGSGPDVFVHHSSIEGVGFKTLSEGQEVTFEIEKGAK 56
Query: 62 NGKYSAENLKLV 73
A +K +
Sbjct: 57 G--PQAVRVKKL 66
>gi|152974668|ref|YP_001374185.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152023420|gb|ABS21190.1| putative cold-shock DNA-binding domain protein [Bacillus
cytotoxicus NVH 391-98]
Length = 67
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI G DVF+H SA+ + G +L EG+ V+++ +
Sbjct: 1 MTVTGQVKWFNNEKGFGFIEV----PGGSDVFVHFSAITTEGFKSLEEGEKVSFEIENGN 56
Query: 61 ANGKYSAENLKLV 73
A+N+ +
Sbjct: 57 RG--PQAKNVVKL 67
>gi|229592309|ref|YP_002874428.1| cold shock protein cspc [Pseudomonas fluorescens SBW25]
gi|229364175|emb|CAY51835.1| cold shock protein cspc [Pseudomonas fluorescens SBW25]
Length = 73
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 6 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 60
Query: 64 KYSAENL 70
AE++
Sbjct: 61 -LQAEDV 66
>gi|213968381|ref|ZP_03396525.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
T1]
gi|301384647|ref|ZP_07233065.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
Max13]
gi|302058900|ref|ZP_07250441.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
K40]
gi|302133013|ref|ZP_07259003.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213927019|gb|EEB60570.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
T1]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ +G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGSGFKSLKEGQKVTFIAVQGQK 59
Query: 62 NGKYSAENL 70
A+ +
Sbjct: 60 G--LQADEV 66
>gi|86137410|ref|ZP_01055987.1| cold shock family protein [Roseobacter sp. MED193]
gi|85825745|gb|EAQ45943.1| cold shock family protein [Roseobacter sp. MED193]
Length = 72
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H S V +GL L + V Y+ +
Sbjct: 1 MPSGTVKWFNTTKGFGFIEPD---AGGSDVFVHISQVERSGLTGLADNMKVDYELTEG-R 56
Query: 62 NGKYSAENLKLVPKS 76
+G+ A ++K + S
Sbjct: 57 DGRQMAGDIKPLMSS 71
>gi|330963182|gb|EGH63442.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--LQADEVQ 67
>gi|46206172|ref|ZP_00047626.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 69
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PE DVF+H SAV AGL LTEGQ V+Y +
Sbjct: 1 MDTGTVKWFNEQKGYGFIQPED---GSKDVFVHISAVERAGLRGLTEGQKVSYVMETDRR 57
Query: 62 NGKYSAENLKL 72
+GK S L++
Sbjct: 58 SGKQSGGKLQV 68
>gi|237727875|ref|ZP_04558356.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2]
gi|226910432|gb|EEH96350.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2]
Length = 70
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP+ DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFNSDKGFGFITPQD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSVENGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|298505030|gb|ADI83753.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
KN400]
Length = 66
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N KG+GF+ E G DVF+H SA+ +G +L EG+ VT+D V
Sbjct: 1 MAKGRVKWFNDSKGFGFLEQEN----GVDVFVHFSAITGSGFKSLAEGEEVTFDVVNGPK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|302546770|ref|ZP_07299112.1| putative cold shock protein [Streptomyces hygroscopicus ATCC
53653]
gi|302464388|gb|EFL27481.1| putative cold shock protein [Streptomyces himastatinicus ATCC
53653]
Length = 67
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q
Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--LTAENI 64
>gi|330873092|gb|EGH07241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--LQADEVQ 67
>gi|330807764|ref|YP_004352226.1| transcription factor, Csd family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375872|gb|AEA67222.1| putative Transcription factor, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 69
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
GS+KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+
Sbjct: 4 RETGSVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|254456290|ref|ZP_05069719.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083292|gb|EDZ60718.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
Pelagibacter sp. HTCC7211]
Length = 68
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+NP KG+GFI E DVF+H SAV AG+ L EGQ +T+D
Sbjct: 1 MSLQGKVKWFNPTKGFGFIEREDKE---KDVFVHVSAVRDAGMNGLDEGQALTFDVEDGP 57
Query: 61 ANGKYSAENLK 71
SA NLK
Sbjct: 58 KG--PSAVNLK 66
>gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
Haarlem]
gi|134149317|gb|EBA41362.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
Haarlem]
Length = 135
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF++ E G+DV++ SA+ + + L GQ V +
Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSALPTF-VEALKAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 56 G--PQALSLRLIEPPPS 70
>gi|104783210|ref|YP_609708.1| cold shock protein CspE-like [Pseudomonas entomophila L48]
gi|95112197|emb|CAK16924.1| putative cold shock protein CspE-like [Pseudomonas entomophila
L48]
Length = 69
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E G DVF+H A+ G L EGQ V Y VQ
Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQQVEYALVQGQK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|227832058|ref|YP_002833765.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
gi|262184088|ref|ZP_06043509.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
gi|227453074|gb|ACP31827.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
Length = 67
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N +KGYGFI E D+F+H + + G L + Q V+++ ++
Sbjct: 1 MAYGTVKFFNAEKGYGFIEQED---GSGDIFVHYTEIQGTGFRTLEDNQRVSFEIGEDAK 57
Query: 62 NGKYSAENLKLV 73
A N+++V
Sbjct: 58 G--QQATNVEVV 67
>gi|226954178|ref|ZP_03824642.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|294650208|ref|ZP_06727582.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
19194]
gi|226835087|gb|EEH67470.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|292823914|gb|EFF82743.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
19194]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + SG DVF H S + S G L EGQ VT+
Sbjct: 6 TGTVKWFNETKGFGFIHAD----SGQDVFAHFSEIQSTGFKVLHEGQRVTFTITDGKKG- 60
Query: 64 KYSAENLKLVP 74
A + +VP
Sbjct: 61 -PQATGITVVP 70
>gi|300722953|ref|YP_003712249.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC
19061]
gi|297629466|emb|CBJ90067.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC
19061]
Length = 71
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S L+EGQ V + +N A G
Sbjct: 6 TGLVKWFNADKGFGFISPSD---GSKDVFVHFSAIQSNDYRTLSEGQKVEFTI-ENGAKG 61
Query: 64 KYSAENL 70
+A +
Sbjct: 62 PAAANVV 68
>gi|238759184|ref|ZP_04620352.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
gi|238702600|gb|EEP95149.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
Length = 66
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 2 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 57
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 58 -PSAVNVVAL 66
>gi|257454785|ref|ZP_05620036.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
gi|257447718|gb|EEV22710.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + G DVF H S +AS+G L+EGQ V++ Q
Sbjct: 6 NGTVKWFNESKGFGFIEQDN---GGKDVFAHYSQIASSGFKTLSEGQRVSFVVTQGQKGD 62
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 63 --QASNIVAI 70
>gi|238762682|ref|ZP_04623651.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
gi|238698987|gb|EEP91735.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
Length = 80
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 16 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 71
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 72 -PSAVNVVAL 80
>gi|209972098|gb|ACJ03560.1| cold shock protein [Bacillus thuringiensis serovar poloniensis]
Length = 67
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW+N +KG+GFI +DVF+H SA+ + G +L EGQ V+ + + +
Sbjct: 1 MAVTGQVKWFNNEKGFGFIEV----PGENDVFVHFSAIETEGFKSLEEGQKVSLEIEEGN 56
Query: 61 ANGKYSAENL 70
A+N+
Sbjct: 57 RG--PQAKNV 64
>gi|254363164|ref|ZP_04979213.1| cold shock protein [Mannheimia haemolytica PHL213]
gi|261493957|ref|ZP_05990465.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261494758|ref|ZP_05991237.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153095058|gb|EDN75609.1| cold shock protein [Mannheimia haemolytica PHL213]
gi|261309575|gb|EEY10799.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310389|gb|EEY11584.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFITP+ + G DVF+H SA+ + G L +G V ++ ++
Sbjct: 5 TGTVKWFNATKGFGFITPD---QGGKDVFVHFSAIEANGGYRTLEDGAKVQFEIQDSERG 61
Query: 63 GKYSAENLKLV 73
SA N+K +
Sbjct: 62 --ASAVNVKTI 70
>gi|90581455|ref|ZP_01237249.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|90437316|gb|EAS62513.1| putative Cold shock-like protein [Vibrio angustum S14]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GF+T + G DVF+H A+AS G L EGQ V++D Q
Sbjct: 7 GLVKWFNEEKGFGFLTQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQKG-- 61
Query: 65 YSAENL 70
A N+
Sbjct: 62 LQAVNV 67
>gi|323934238|gb|EGB30662.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
Length = 71
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S L EGQ V + +N A G
Sbjct: 6 TGLVKWFNSDKGFGFISPAD---GSKDVFVHFSAIQSNNFRTLEEGQQVEFSI-ENGAKG 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVVAL 70
>gi|317493995|ref|ZP_07952411.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917768|gb|EFV39111.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S +L EGQ V + +N A G
Sbjct: 6 TGLVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSDSYKSLDEGQSVEFTI-ENGAKG 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVVAL 70
>gi|322434375|ref|YP_004216587.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321162102|gb|ADW67807.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 75
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G +KW+N KG+GF+ E G DVF+H S++ G +L EG V +D +Q +
Sbjct: 4 YKGEVKWFNNAKGFGFLGRE----EGPDVFVHYSSIQLDGYKSLKEGDKVEFDVIQGEKG 59
Query: 63 GKYSAENLK 71
A+ +
Sbjct: 60 --PQADRVT 66
>gi|85710988|ref|ZP_01042049.1| Cold shock protein [Idiomarina baltica OS145]
gi|85695392|gb|EAQ33329.1| Cold shock protein [Idiomarina baltica OS145]
Length = 68
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K++N KG+GFI E G DVF+H SA+ + G L EGQ V++ Q
Sbjct: 4 TTGKVKFFNEAKGFGFIEQEN----GADVFVHFSAIQADGFKTLAEGQQVSFTVAQGPKG 59
Query: 63 GKYSAENL 70
AEN+
Sbjct: 60 --PQAENV 65
>gi|291615935|ref|YP_003518677.1| CspB [Pantoea ananatis LMG 20103]
gi|291150965|gb|ADD75549.1| CspB [Pantoea ananatis LMG 20103]
gi|327396192|dbj|BAK13614.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
Length = 79
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P+ DVF+H SA+ S+ L EGQ V +
Sbjct: 15 TGLVKWFNADKGFGFISPQD---GSKDVFVHFSAIQSSDFKTLDEGQKVEFSIENGPKG- 70
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 71 -PSAGNVVAL 79
>gi|212712025|ref|ZP_03320153.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens
DSM 30120]
gi|212685547|gb|EEB45075.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens
DSM 30120]
Length = 66
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI+P DVF+H SA+ S L EGQ V++
Sbjct: 2 TGLVKWFNESKGFGFISPAD---GSKDVFVHFSAIQSDSFKTLNEGQKVSFSVENGAKG- 57
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 58 -PAAVNVVAL 66
>gi|119469733|ref|ZP_01612602.1| Cold shock protein [Alteromonadales bacterium TW-7]
gi|119446980|gb|EAW28251.1| Cold shock protein [Alteromonadales bacterium TW-7]
Length = 69
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFI E SG DVF H SA++ G L EGQ V + Q
Sbjct: 5 TTGTVKFFNEAKGFGFIEQE----SGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG 60
Query: 63 GKYSAENL 70
AEN+
Sbjct: 61 --PQAENI 66
>gi|88857117|ref|ZP_01131760.1| Cold shock protein [Pseudoalteromonas tunicata D2]
gi|88820314|gb|EAR30126.1| Cold shock protein [Pseudoalteromonas tunicata D2]
Length = 69
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GFI SG DVF H SA++ G L EGQ V + Q
Sbjct: 5 TTGSVKWFNEAKGFGFIE----QASGPDVFAHFSAISGDGFKTLAEGQRVQFTVSQGQKG 60
Query: 63 GKYSAENL 70
A+N+
Sbjct: 61 --PQADNI 66
>gi|237745018|ref|ZP_04575499.1| cold shock protein [Fusobacterium sp. 7_1]
gi|256028777|ref|ZP_05442611.1| cold shock protein [Fusobacterium sp. D11]
gi|289766681|ref|ZP_06526059.1| cold shock protein [Fusobacterium sp. D11]
gi|229432247|gb|EEO42459.1| cold shock protein [Fusobacterium sp. 7_1]
gi|289718236|gb|EFD82248.1| cold shock protein [Fusobacterium sp. D11]
Length = 66
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ +
Sbjct: 2 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+ ++
Sbjct: 57 -PQASNIVIIK 66
>gi|104781104|ref|YP_607602.1| cold shock protein CapA [Pseudomonas entomophila L48]
gi|95110091|emb|CAK14796.1| cold shock protein CapA [Pseudomonas entomophila L48]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ VT+ +
Sbjct: 4 RQNGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQAVTFVAEKGQK 60
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 61 G--MQAAQVRP 69
>gi|71083962|ref|YP_266682.1| cold shock DNA-binding domain-containing protein [Candidatus
Pelagibacter ubique HTCC1062]
gi|91762969|ref|ZP_01264934.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
ubique HTCC1002]
gi|71063075|gb|AAZ22078.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
ubique HTCC1062]
gi|91718771|gb|EAS85421.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
ubique HTCC1002]
Length = 68
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+NP KG+GFI E DVF+H SAV AG+ L EGQ +T++
Sbjct: 1 MSLQGKVKWFNPTKGFGFIEREDKE---KDVFVHVSAVRDAGMNGLDEGQALTFEVEDGP 57
Query: 61 ANGKYSAENLK 71
SA NLK
Sbjct: 58 KG--PSAVNLK 66
>gi|312961675|ref|ZP_07776173.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
gi|311283934|gb|EFQ62517.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
Length = 91
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KGYGF+ + T +D+F H SA+ G L GQ+V+++ +Q
Sbjct: 8 GKVKWFNNAKGYGFVNEDRKT---EDLFAHYSAIIMDGYKTLKAGQVVSFEIIQGPKG-- 62
Query: 65 YSAENLKLVPKSS 77
A N+ V
Sbjct: 63 LHAVNIDAVKAEP 75
>gi|293608625|ref|ZP_06690928.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829198|gb|EFF87560.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 75
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G D+F H + + + G L EGQ V + VQ
Sbjct: 10 GTVKWFNETKGFGFIAAD----EGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG-- 63
Query: 65 YSAENLKLVPKS 76
A N+ ++ S
Sbjct: 64 PQASNIVILQNS 75
>gi|289665681|ref|ZP_06487262.1| major cold shock protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289671305|ref|ZP_06492380.1| major cold shock protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 69
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLKLV 73
A+ ++ V
Sbjct: 60 G--MQADQVQAV 69
>gi|260913997|ref|ZP_05920471.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
gi|260632084|gb|EEX50261.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
Length = 69
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP G D+F+H S + L EG V Y +
Sbjct: 5 NGTVKWFNSDKGFGFITPAD---GGKDLFVHFSGIIGTSYRTLNEGDRVQYSVQDSQRG- 60
Query: 64 KYSAENLKLV 73
SA +++++
Sbjct: 61 -PSAIDVQVI 69
>gi|258645332|ref|ZP_05732801.1| putative cold shock protein [Dialister invisus DSM 15470]
gi|260402681|gb|EEW96228.1| putative cold shock protein [Dialister invisus DSM 15470]
Length = 66
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ DKG+GFI E G DVF+H SA+ + G L+EGQ V +D +
Sbjct: 2 KGTVKWFSADKGFGFIERE----EGGDVFVHYSAIQTEGFKTLSEGQKVDFDIIDGARG- 56
Query: 64 KYSAENLKLVP 74
A N+K+V
Sbjct: 57 -PQAANVKVVD 66
>gi|253581856|ref|ZP_04859080.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
gi|251836205|gb|EES64742.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
Length = 65
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G D+F H S + G L E + VTYD ++
Sbjct: 2 KGTVKWFNQEKGFGFITGED----GKDIFAHFSQIQKDGFKTLNENEEVTYDVIEGQKG- 56
Query: 64 KYSAENLK 71
A N+K
Sbjct: 57 -PQAANIK 63
>gi|238755702|ref|ZP_04617036.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
gi|238706069|gb|EEP98452.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
Length = 66
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S+ L EGQ V + Q
Sbjct: 2 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSSDFKTLDEGQNVEFSIEQGQKG- 57
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 58 -PSAVNVVAL 66
>gi|49082396|gb|AAT50598.1| PA3266 [synthetic construct]
Length = 70
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFITPE SG+D+F+H ++ G +L EGQ V++ V
Sbjct: 4 RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 60 G--LQADEVQVV 69
>gi|56459145|ref|YP_154426.1| cold shock protein [Idiomarina loihiensis L2TR]
gi|56178155|gb|AAV80877.1| Cold shock protein [Idiomarina loihiensis L2TR]
Length = 68
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K++N KG+GFI E G DVF+H SA+ S G L EGQ V++ Q
Sbjct: 4 TTGKVKFFNEAKGFGFIEQEN----GADVFVHFSAIQSDGFKTLAEGQQVSFTVAQGPKG 59
Query: 63 GKYSAENL 70
AEN+
Sbjct: 60 --PQAENV 65
>gi|253988509|ref|YP_003039865.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211637909|emb|CAR66538.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779959|emb|CAQ83120.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica]
Length = 71
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI+P+ DVF+H SA+ S L EGQ V++
Sbjct: 6 TGSVKWFNNDKGFGFISPKN---GSKDVFVHYSAIQSNNFKTLEEGQEVSFSIENGAKG- 61
Query: 64 KYSAENLKLVP 74
SA N+ ++
Sbjct: 62 -PSAVNVIVLS 71
>gi|294470714|gb|ADE80749.1| cold shock domain protein 2 [Eutrema salsugineum]
Length = 201
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW++ KG+GFITP+ + GDD+F+H+S++ S G +L + V ++ + D NG
Sbjct: 13 RGTVKWFDTQKGFGFITPDDA---GDDLFVHQSSIRSDGFRSLAADESVEFEV-EMDNNG 68
Query: 64 KYSAENLK 71
+ A +
Sbjct: 69 RPKAIEVS 76
>gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110821461|gb|ABG96745.1| probable cold shock protein [Rhodococcus jostii RHA1]
Length = 136
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 1 MPTGKVKWYDVEKGFGFLSQE----EGEDVYVRSSAL-PEGVEGLKAGQRVEFGMAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LK++ + +
Sbjct: 56 G--PQALSLKVLDPAPS 70
>gi|333025177|ref|ZP_08453241.1| putative cold shock protein [Streptomyces sp. Tu6071]
gi|332745029|gb|EGJ75470.1| putative cold shock protein [Streptomyces sp. Tu6071]
Length = 62
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q A
Sbjct: 2 KWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPKG--PQA 56
Query: 68 ENLKLV 73
EN+ +
Sbjct: 57 ENVSAL 62
>gi|156934364|ref|YP_001438280.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC
BAA-894]
gi|156532618|gb|ABU77444.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC
BAA-894]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI P DVF+H SA+ S LTEGQ V +
Sbjct: 6 NGSVKWFNADKGFGFIAPAD---GSKDVFVHFSAIQSDNFRTLTEGQQVEFSVENGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|78186132|ref|YP_374175.1| cold-shock DNA-binding domain-containing protein [Chlorobium
luteolum DSM 273]
gi|78166034|gb|ABB23132.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM
273]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI G DVF+H SA+ +G L EGQ V+ + Q +
Sbjct: 7 GTVKWFNEEKGYGFIQ----QGEGKDVFVHYSAINGSGRKTLVEGQKVSMEVTQGEKG-- 60
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 61 LQAANVTPL 69
>gi|51597265|ref|YP_071456.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108808380|ref|YP_652296.1| cold shock protein [Yersinia pestis Antiqua]
gi|108811305|ref|YP_647072.1| cold shock protein [Yersinia pestis Nepal516]
gi|123441290|ref|YP_001005277.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145598899|ref|YP_001162975.1| cold shock protein [Yersinia pestis Pestoides F]
gi|149365449|ref|ZP_01887484.1| cold shock protein [Yersinia pestis CA88-4125]
gi|153949592|ref|YP_001400051.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
gi|162420073|ref|YP_001607873.1| cold shock protein [Yersinia pestis Angola]
gi|165925316|ref|ZP_02221148.1| cold shock protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939935|ref|ZP_02228473.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275]
gi|166008469|ref|ZP_02229367.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001]
gi|166212413|ref|ZP_02238448.1| cold shock protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398538|ref|ZP_02304062.1| cold shock protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421189|ref|ZP_02312942.1| cold shock protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423656|ref|ZP_02315409.1| cold shock protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170023370|ref|YP_001719875.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186896369|ref|YP_001873481.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|218929733|ref|YP_002347608.1| cold shock protein [Yersinia pestis CO92]
gi|229838213|ref|ZP_04458372.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895592|ref|ZP_04510763.1| cold shock protein [Yersinia pestis Pestoides A]
gi|229898778|ref|ZP_04513923.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229901551|ref|ZP_04516673.1| cold shock protein [Yersinia pestis Nepal516]
gi|270489738|ref|ZP_06206812.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|332162760|ref|YP_004299337.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|61221540|sp|P0A362|CSPB_YERPE RecName: Full=Cold shock-like protein CspB
gi|61221541|sp|P0A363|CSPB_YEREN RecName: Full=Cold shock-like protein CspB
gi|3249024|gb|AAC24037.1| cold shock protein CspB [Yersinia enterocolitica]
gi|51590547|emb|CAH22188.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
gi|108774953|gb|ABG17472.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108780293|gb|ABG14351.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115348344|emb|CAL21278.1| cold shock protein [Yersinia pestis CO92]
gi|122088251|emb|CAL11041.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145210595|gb|ABP40002.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149291862|gb|EDM41936.1| cold shock protein [Yersinia pestis CA88-4125]
gi|152961087|gb|ABS48548.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
gi|162352888|gb|ABX86836.1| cold shock protein [Yersinia pestis Angola]
gi|165912154|gb|EDR30793.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275]
gi|165922923|gb|EDR40074.1| cold shock protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992851|gb|EDR45152.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001]
gi|166206344|gb|EDR50824.1| cold shock protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960678|gb|EDR56699.1| cold shock protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051042|gb|EDR62450.1| cold shock protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057826|gb|EDR67572.1| cold shock protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169749904|gb|ACA67422.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186699395|gb|ACC90024.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229681480|gb|EEO77574.1| cold shock protein [Yersinia pestis Nepal516]
gi|229688326|gb|EEO80397.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229694579|gb|EEO84626.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701398|gb|EEO89426.1| cold shock protein [Yersinia pestis Pestoides A]
gi|270338242|gb|EFA49019.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|318606863|emb|CBY28361.1| cold shock protein CspG [Yersinia enterocolitica subsp.
palearctica Y11]
gi|320016134|gb|ADV99705.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|325666990|gb|ADZ43634.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859919|emb|CBX70249.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|89073823|ref|ZP_01160330.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
gi|89050358|gb|EAR55859.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GF+T + G DVF+H A+AS G LTEGQ V++D Q
Sbjct: 7 GLVKWFNEEKGFGFLTQDN---GGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQKG-- 61
Query: 65 YSAENL 70
A N+
Sbjct: 62 LQAANV 67
>gi|119946327|ref|YP_944007.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864931|gb|ABM04408.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GF+T + G DVF H A+AS G L EGQ V+++ Q
Sbjct: 5 TTGLVKWFDEAKGFGFLTQDN---GGADVFCHFRAIASEGFKTLAEGQKVSFEVEQGQKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --LQAGNV 67
>gi|271970081|ref|YP_003344277.1| cold-shock DNA-binding domain-containing protein
[Streptosporangium roseum DSM 43021]
gi|270513256|gb|ACZ91534.1| putative cold-shock DNA-binding domain protein [Streptosporangium
roseum DSM 43021]
Length = 132
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF+T + G +VF+H SA+ G+ +L GQ V + +
Sbjct: 1 MPSGKVKWYDADKGFGFLTRDD----GGEVFVHSSALPG-GVDSLKPGQKVEFGVAEGRR 55
Query: 62 NGKYSAENLKLVPKSS 77
A +++++ +
Sbjct: 56 G--QQALSVRVIDQPP 69
>gi|311114545|ref|YP_003985766.1| cold-shock domain family protein [Gardnerella vaginalis ATCC
14019]
gi|310946039|gb|ADP38743.1| cold-shock domain family protein [Gardnerella vaginalis ATCC
14019]
Length = 129
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++WY+ KGYGFI E G DVFL SA+ + + L +G V + V+
Sbjct: 1 MPNGRVRWYDSKKGYGFICDED----GKDVFLPSSALPES-VKELRKGTRVEFSVVEGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L +V + +
Sbjct: 56 G--PQAMGLTVVASAPS 70
>gi|84386379|ref|ZP_00989407.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
gi|86146530|ref|ZP_01064852.1| putative Cold shock-like protein [Vibrio sp. MED222]
gi|218708238|ref|YP_002415859.1| putative cold shock protein [Vibrio splendidus LGP32]
gi|84378803|gb|EAP95658.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
gi|85835587|gb|EAQ53723.1| putative Cold shock-like protein [Vibrio sp. MED222]
gi|218321257|emb|CAV17207.1| putative cold shock protein [Vibrio splendidus LGP32]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GF+T + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 5 TNGVVKWFNEEKGFGFLTQDN---GGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|148270113|ref|YP_001244573.1| cold-shock DNA-binding domain-containing protein [Thermotoga
petrophila RKU-1]
gi|170288941|ref|YP_001739179.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
RQ2]
gi|281412545|ref|YP_003346624.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
gi|147735657|gb|ABQ46997.1| cold-shock DNA-binding protein family [Thermotoga petrophila
RKU-1]
gi|170176444|gb|ACB09496.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
gi|281373648|gb|ADA67210.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
RKU-10]
Length = 66
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ +
Sbjct: 2 RGKVKWFDAKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG- 56
Query: 64 KYSAENLKLV 73
A ++K+V
Sbjct: 57 -PQAAHVKVV 65
>gi|289678192|ref|ZP_06499082.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae FF5]
gi|330899515|gb|EGH30934.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330938935|gb|EGH42434.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330982632|gb|EGH80735.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--MQADEVQ 67
>gi|28868485|ref|NP_791104.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28851723|gb|AAO54799.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331015230|gb|EGH95286.1| cold shock domain family protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59
Query: 62 NGKYSAENL 70
A+ +
Sbjct: 60 G--LQADEV 66
>gi|325578326|ref|ZP_08148461.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC
33392]
gi|301156234|emb|CBW15705.1| cold shock protein homolog [Haemophilus parainfluenzae T3T1]
gi|325160062|gb|EGC72191.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC
33392]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EG D+F H SA+ G +L GQ V ++ + D
Sbjct: 1 MEIGVVKWFNNAKGFGFISAEGVDT---DIFAHYSAIEMDGYRSLKAGQRVQFEVIHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|238794631|ref|ZP_04638237.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909]
gi|238726020|gb|EEQ17568.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909]
Length = 66
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S L EGQ V + +N A G
Sbjct: 2 TGLVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 57
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 58 PAAANVIAL 66
>gi|304391309|ref|ZP_07373253.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
gi|303296665|gb|EFL91021.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
Length = 68
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K++N KGYGFITP+ G D+F+H SAV +GL L+EG +T+D +
Sbjct: 2 QGHVKFFNAAKGYGFITPDD---GGADIFVHISAVEQSGLTTLSEGSAITFDVEPDKKGK 58
Query: 64 KYSAENLKL 72
A +LK+
Sbjct: 59 GPKAIDLKV 67
>gi|238757625|ref|ZP_04618809.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236]
gi|238704130|gb|EEP96663.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236]
Length = 65
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y Q+ G
Sbjct: 2 GQVKWFNESKGFGFIEQAD---GGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPRGP 57
Query: 65 YSAENLKL 72
+A + L
Sbjct: 58 AAANVVAL 65
>gi|226313978|ref|YP_002773874.1| cold shock protein [Brevibacillus brevis NBRC 100599]
gi|226096928|dbj|BAH45370.1| cold shock protein [Brevibacillus brevis NBRC 100599]
Length = 68
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ +KGYGFI + G DVF+H SA+ AG NL EG+ V ++ V
Sbjct: 1 MIQGKVKWFSKEKGYGFIERD----GGPDVFVHYSAITGAGYRNLEEGEQVVFEIVNGQR 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAANV 63
>gi|260772014|ref|ZP_05880931.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14]
gi|260612881|gb|EEX38083.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GF++ + G DVF+H +A+AS G L EGQ V++ V+N
Sbjct: 5 ATGTVKWFNETKGFGFLSQDN---GGADVFVHFNAIASEGFKTLIEGQKVSF-VVENGQK 60
Query: 63 GKYSAENLKL 72
G +A+ + L
Sbjct: 61 GLQAAQVVTL 70
>gi|87119420|ref|ZP_01075317.1| Cold shock protein [Marinomonas sp. MED121]
gi|86164896|gb|EAQ66164.1| Cold shock protein [Marinomonas sp. MED121]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT + G DVF+H SA+ S+G L EGQ V +
Sbjct: 6 TGTVKFFNETKGFGFITQD----KGPDVFVHFSAINSSGFKTLAEGQKVEFQVADGKKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -PEAQNVTPL 69
>gi|308176351|ref|YP_003915757.1| cold shock protein [Arthrobacter arilaitensis Re117]
gi|307743814|emb|CBT74786.1| putative cold shock protein [Arthrobacter arilaitensis Re117]
Length = 127
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY KG+GFIT E G +++++ +A+ G+ +L G + + +
Sbjct: 1 MPSGKVKWYEKAKGFGFITAED----GKEIYVNAAAL-PEGVHDLRPGTRLEFGVAEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ ++ +
Sbjct: 56 G--PQALSLRLLEEAPS 70
>gi|262368483|ref|ZP_06061812.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
johnsonii SH046]
gi|262316161|gb|EEY97199.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
johnsonii SH046]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI+ + +G+DVF H S + S G L EGQ V + V
Sbjct: 5 TTGTVKWFNETKGFGFISSD----TGEDVFAHFSEIQSNGFKVLNEGQRVQFTIVAGKKG 60
Query: 63 GKYSAENLKLV 73
A ++ ++
Sbjct: 61 --PQASSITVI 69
>gi|15890768|ref|NP_356440.1| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|15159048|gb|AAK89225.1| cold shock protein [Agrobacterium tumefaciens str. C58]
Length = 76
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++ DKG+GFITP+ G DVF+H SAV G +L +GQ V+Y+ Q+
Sbjct: 10 MATGTVKFFAQDKGFGFITPDN---GGPDVFVHISAVGFGG--SLQDGQKVSYELGQDRK 64
Query: 62 NGKYSAENLKLV 73
GK AEN+ L+
Sbjct: 65 TGKSKAENVTLL 76
>gi|77458156|ref|YP_347661.1| cold-shock DNA-binding protein family protein [Pseudomonas
fluorescens Pf0-1]
gi|77382159|gb|ABA73672.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ + G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIETDGFKSLKEGQTVSFVAEKGQK 60
Query: 62 NGKYSAENLKL 72
A ++
Sbjct: 61 G--MQAAQVRP 69
>gi|304395415|ref|ZP_07377298.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308185821|ref|YP_003929952.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
gi|304356709|gb|EFM21073.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|308056331|gb|ADO08503.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N +KG+GFI+P DVF+H SA+ +L EGQ V + V+N A G
Sbjct: 6 RGTVKWFNAEKGFGFISPAD---GSKDVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61
Query: 64 KYSAENL 70
+A +
Sbjct: 62 PAAANVV 68
>gi|157158051|ref|YP_001462848.1| cold shock DNA-binding protein [Escherichia coli E24377A]
gi|331668012|ref|ZP_08368867.1| conserved domain protein [Escherichia coli TA271]
gi|331673146|ref|ZP_08373914.1| conserved domain protein [Escherichia coli TA280]
gi|157080081|gb|ABV19789.1| cold shock DNA-binding protein [Escherichia coli E24377A]
gi|222033318|emb|CAP76058.1| Cold shock-like protein cspB [Escherichia coli LF82]
gi|331064754|gb|EGI36658.1| conserved domain protein [Escherichia coli TA271]
gi|331069344|gb|EGI40731.1| conserved domain protein [Escherichia coli TA280]
Length = 71
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ + L EGQ VT+
Sbjct: 6 TGLVKWFNADKGFGFISPVD---GSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAVNV 67
>gi|149190926|ref|ZP_01869189.1| putative Cold shock-like protein [Vibrio shilonii AK1]
gi|148835281|gb|EDL52255.1| putative Cold shock-like protein [Vibrio shilonii AK1]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GF+ E G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 6 NGTVKWFNEEKGFGFLAQEN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG- 61
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 62 -LQAANVVAL 70
>gi|153955498|ref|YP_001396263.1| hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555]
gi|219855901|ref|YP_002473023.1| hypothetical protein CKR_2558 [Clostridium kluyveri NBRC 12016]
gi|146348356|gb|EDK34892.1| Hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555]
gi|219569625|dbj|BAH07609.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 65
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G DVF H S + S G L EGQ V++D +
Sbjct: 2 TGTVKWFNGNKGFGFITGED----GKDVFAHFSQINSEGYKTLEEGQKVSFDEGRGQKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -TQAENITVL 65
>gi|163737381|ref|ZP_02144798.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
BS107]
gi|163740951|ref|ZP_02148344.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
gi|161385942|gb|EDQ10318.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
gi|161388907|gb|EDQ13259.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
BS107]
Length = 68
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI PEG G DVF+H S V +GL L + Q V ++ +
Sbjct: 1 MASGTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVDFEMTEG-R 56
Query: 62 NGKYSAENLKL 72
+G+ A +++
Sbjct: 57 DGRQMASDIRP 67
>gi|163801254|ref|ZP_02195153.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4]
gi|159174743|gb|EDP59543.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G DVF+H +A+ S G L EGQ V++ +
Sbjct: 5 TGSVKWFNESKGFGFLTQDD---GGKDVFVHFNAIVSDGFKTLAEGQKVSFKVEEGQKG- 60
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 61 -PQATEVTPL 69
>gi|22125131|ref|NP_668554.1| cold shock protein [Yersinia pestis KIM 10]
gi|45442244|ref|NP_993783.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|21957990|gb|AAM84805.1|AE013726_8 homolog of Salmonella cold shock protein [Yersinia pestis KIM 10]
gi|45437108|gb|AAS62660.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
Length = 80
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 16 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 71
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 72 -PSAVNVVAL 80
>gi|153950481|ref|YP_001399368.1| cold shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis IP 31758]
gi|152961976|gb|ABS49437.1| cold shock DNA-binding domain protein [Yersinia
pseudotuberculosis IP 31758]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFNADKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|206579907|ref|YP_002240730.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
342]
gi|206568965|gb|ACI10741.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
342]
Length = 72
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N DKG+GFI+P D+F+H SA+ L EGQ V + + D
Sbjct: 7 GLVKWFNEDKGFGFISPLD---GSKDIFVHLSALNGDNFKTLFEGQKVEFAIHRGDKG-- 61
Query: 65 YSAENLKL 72
+A N+ L
Sbjct: 62 PAAANVTL 69
>gi|229588789|ref|YP_002870908.1| major cold shock protein [Pseudomonas fluorescens SBW25]
gi|229360655|emb|CAY47513.1| major cold shock protein [Pseudomonas fluorescens SBW25]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E G DVF+H A+ G +L EGQ V Y V +
Sbjct: 4 RETGNVKWFNDAKGYGFIQRED----GKDVFVHYRAIRGEGHRSLAEGQQVEYAVVTGEK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|223935943|ref|ZP_03627858.1| cold-shock DNA-binding domain protein [bacterium Ellin514]
gi|223895544|gb|EEF61990.1| cold-shock DNA-binding domain protein [bacterium Ellin514]
Length = 68
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KG+GFI + SG DVF+H +++ +G L EG+ V ++ V +D
Sbjct: 1 MASGKVKWFDNKKGFGFIAQD----SGQDVFVHHTSILGSGFKTLNEGEEVNFEVVSSDK 56
Query: 62 NGKYSAENLKLV 73
K A+N++ V
Sbjct: 57 GPK--AQNVQRV 66
>gi|91805295|gb|ABE65379.1| CspC [Escherichia coli]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+ FITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQVKWFNESKGFRFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|329894352|ref|ZP_08270222.1| putative cold-shock DNA-binding domain protein [gamma
proteobacterium IMCC3088]
gi|328923148|gb|EGG30471.1| putative cold-shock DNA-binding domain protein [gamma
proteobacterium IMCC3088]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KGYGFI E + DDVF+H ++ G L EGQ V +
Sbjct: 7 GKVKWFNNAKGYGFIERENES---DDVFVHFRSIQGEGFRTLNEGQAVEFTLTTGPKG-- 61
Query: 65 YSAENL 70
AE++
Sbjct: 62 LQAEDV 67
>gi|63148792|gb|AAY34518.1| cold shock protein [Bacillus thuringiensis serovar tolworthi]
Length = 61
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 GIVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRGPP 56
Query: 65 YSAENLK 71
A N+
Sbjct: 57 --AANVT 61
>gi|77457312|ref|YP_346817.1| cold-shock DNA-binding protein family protein [Pseudomonas
fluorescens Pf0-1]
gi|77381315|gb|ABA72828.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+
Sbjct: 4 RETGNVKWFNDAKGYGFIQRED----GVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|260855295|ref|YP_003229186.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
gi|257753944|dbj|BAI25446.1| predicted cold shock protein [Escherichia coli O26:H11 str.
11368]
gi|323156712|gb|EFZ42850.1| cold shock-like protein cspG [Escherichia coli EPECa14]
Length = 71
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ + L EGQ VT+ +
Sbjct: 6 TGLVKWFNADKGFGFISPVD---GSKDVFVHFSAIQNDNYRTLFEGQKVTFSIERGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|226941142|ref|YP_002796216.1| hypothetical protein LHK_02223 [Laribacter hongkongensis HLHK9]
gi|226716069|gb|ACO75207.1| cold-shock domain family protein [Laribacter hongkongensis HLHK9]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI+P+ GDD+F H + + + G L EG+ VT++
Sbjct: 4 QTGTVKWFNETKGFGFISPD---AGGDDLFAHFTEIQTKGFRTLAEGERVTFETKMGPKG 60
Query: 63 GKYSAENLKL 72
+A N++
Sbjct: 61 --VAAANIQK 68
>gi|326388755|ref|ZP_08210344.1| cold-shock DNA-binding domain protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206779|gb|EGD57607.1| cold-shock DNA-binding domain protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 68
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKGYGFI PE G+D F+H SAV AG+ L++ Q ++Y+ + D
Sbjct: 1 MTIGTVKFFNTDKGYGFIAPEN---GGNDSFVHFSAVQQAGMATLSKDQRLSYEV-ETDR 56
Query: 62 NGKYSAENL 70
GK SA NL
Sbjct: 57 RGKQSAINL 65
>gi|163751971|ref|ZP_02159182.1| cold-shock DNA-binding domain family protein [Shewanella benthica
KT99]
gi|161328129|gb|EDP99296.1| cold-shock DNA-binding domain family protein [Shewanella benthica
KT99]
Length = 68
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKG+GFITPE D+F+H S + G L +GQ V ++ Q
Sbjct: 1 MAKGTVKWFNADKGFGFITPED---GSKDLFVHHSEIQAGGGFATLNDGQEVEFEVGQGQ 57
Query: 61 ANGKYSAENLKLV 73
A + V
Sbjct: 58 KG--PCANKVVPV 68
>gi|330962175|gb|EGH62435.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 70
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVSVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--LQADEVQ 67
>gi|169824501|ref|YP_001692112.1| cold shock protein [Finegoldia magna ATCC 29328]
gi|302380494|ref|ZP_07268959.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3]
gi|303233739|ref|ZP_07320393.1| cold shock protein CspD [Finegoldia magna BVS033A4]
gi|167831306|dbj|BAG08222.1| cold shock protein [Finegoldia magna ATCC 29328]
gi|302311437|gb|EFK93453.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3]
gi|302495173|gb|EFL54925.1| cold shock protein CspD [Finegoldia magna BVS033A4]
Length = 67
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ +G +KW+N KG+GFI+ E DVF+H +A+ G L E Q V ++ +
Sbjct: 1 MTKGKVKWFNATKGFGFISTEDQG----DVFVHYTAIEDNGEYRKLEENQEVEFEISEGP 56
Query: 61 ANGKYSAENLKLV 73
A N+K +
Sbjct: 57 KG--LQACNVKKL 67
>gi|15233440|ref|NP_195326.1| CSDP1 (cold shock domain protein 1); RNA binding /
double-stranded DNA binding / nucleic acid binding /
single-stranded DNA binding [Arabidopsis thaliana]
gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana]
gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana]
gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
Length = 299
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + W+N KGYGFITP+ + ++F+H+S++ S G +LT G V + Q +G
Sbjct: 12 TGKVNWFNASKGYGFITPDDGSV---ELFVHQSSIVSEGYRSLTVGDAVEFAITQGS-DG 67
Query: 64 KYSAENLK 71
K A N+
Sbjct: 68 KTKAVNVT 75
>gi|77361880|ref|YP_341455.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Pseudoalteromonas haloplanktis
TAC125]
gi|77362296|ref|YP_341870.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
gi|315122994|ref|YP_004065000.1| cold shock protein [Pseudoalteromonas sp. SM9913]
gi|76876791|emb|CAI88013.1| RNA chaperone, transcription antiterminator, affects expression
of rpoS and uspA [Pseudoalteromonas haloplanktis
TAC125]
gi|76877207|emb|CAI89424.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
gi|315016754|gb|ADT70091.1| cold shock protein [Pseudoalteromonas sp. SM9913]
Length = 69
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFI E SG DVF H SA++ G L EGQ V + Q
Sbjct: 5 TTGTVKFFNEAKGFGFIEQE----SGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG 60
Query: 63 GKYSAENL 70
AEN+
Sbjct: 61 --PQAENI 66
>gi|238750463|ref|ZP_04611964.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
gi|238790115|ref|ZP_04633892.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
gi|238794420|ref|ZP_04638030.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
gi|238711394|gb|EEQ03611.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
gi|238721784|gb|EEQ13447.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
gi|238726215|gb|EEQ17759.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
Length = 66
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 2 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 57
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 58 -PSAVNVVAL 66
>gi|224012555|ref|XP_002294930.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
gi|220969369|gb|EED87710.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
Length = 102
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++ KGYGFITP +D+F+H+S++ G L EG V ++ +D +GK
Sbjct: 7 GNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSIHCDGYRTLDEGWEVEFEIGHDD-DGK 65
Query: 65 YSAENLK 71
A ++
Sbjct: 66 VKAVSVT 72
>gi|90580456|ref|ZP_01236262.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|90438365|gb|EAS63550.1| putative Cold shock-like protein [Vibrio angustum S14]
Length = 70
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +KW+N DKG+GFIT + G DVF+H A+ S G L +GQ V++D Q
Sbjct: 5 NTGLVKWFNEDKGFGFITQDN---GGADVFVHFQAIVSEGFKTLMDGQKVSFDVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQASNVVAL 70
>gi|154247142|ref|YP_001418100.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154161227|gb|ABS68443.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 68
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI + E G DVF+H S V +GL+ L +GQ V++D V ++
Sbjct: 1 MATGTVKFFNSQKGFGFIQQD---EGGPDVFVHISDVERSGLYGLNDGQKVSFDIVADNR 57
Query: 62 NGKYSAENLKLV 73
GK A NL +
Sbjct: 58 -GKSKASNLAAL 68
>gi|319405275|emb|CBI78889.1| putative cold shock protein y4cH [Bartonella sp. AR 15-3]
Length = 71
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N +KG+GFI P+ D+F+H S V ++GL L + Q V++D +
Sbjct: 1 MAQTGEVKFFNNNKGFGFIKPDN---GSTDIFVHISDVQASGLTGLNDAQKVSFDIEPDR 57
Query: 61 ANGKYSAENLKLVP 74
A N+ ++
Sbjct: 58 RGKGPKAININVMS 71
>gi|255318974|ref|ZP_05360199.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|262378290|ref|ZP_06071447.1| cold shock domain-containing protein CspD [Acinetobacter
radioresistens SH164]
gi|255303991|gb|EET83183.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|262299575|gb|EEY87487.1| cold shock domain-containing protein CspD [Acinetobacter
radioresistens SH164]
Length = 69
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S + + G L EGQ V + V
Sbjct: 6 KGTVKWFNETKGFGFIQQE----SGPDVFAHYSEITNQGFKTLYEGQQVQFTVVDGKKG- 60
Query: 64 KYSAENLKLV 73
A N+ LV
Sbjct: 61 -PQASNITLV 69
>gi|149185796|ref|ZP_01864111.1| Cold shock protein [Erythrobacter sp. SD-21]
gi|148830357|gb|EDL48793.1| Cold shock protein [Erythrobacter sp. SD-21]
Length = 69
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKGYGFI P+ D F+H SAV +AG+ L + Q + Y+ +
Sbjct: 1 MTTGTVKFFNGDKGYGFIQPDD---GSADSFVHISAVQAAGMTTLDKDQRLNYEV-ETGR 56
Query: 62 NGKYSAENLK 71
NGK SA NL
Sbjct: 57 NGKASAVNLS 66
>gi|322832237|ref|YP_004212264.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|321167438|gb|ADW73137.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
Length = 69
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFI G DVF+H SA+A+ G L EGQ V Y +
Sbjct: 4 KNGQVKWFNESKGFGFIEQAD---GGKDVFVHFSAIATDGFKTLAEGQRVEYTIQDSPRG 60
Query: 63 GKYSAENL 70
+A N+
Sbjct: 61 --PAAANV 66
>gi|262278468|ref|ZP_06056253.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
gi|299769413|ref|YP_003731439.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
gi|262258819|gb|EEY77552.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
gi|298699501|gb|ADI90066.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
Length = 69
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G DVF H ++ +G L EGQ VT+ Q
Sbjct: 7 GTVKWFNETKGFGFIQQDN----GPDVFAHFKEISGSGFKTLHEGQRVTFTVTQGQKG-- 60
Query: 65 YSAENL 70
+A N+
Sbjct: 61 PNAVNI 66
>gi|153874948|ref|ZP_02002962.1| Cold shock protein [Beggiatoa sp. PS]
gi|152068588|gb|EDN67038.1| Cold shock protein [Beggiatoa sp. PS]
Length = 71
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI E E DVF+H +++ G +L EGQ VT D Q
Sbjct: 8 GTVKWFNDSKGFGFIEQE---EGQPDVFVHHTSIQGEGFKSLQEGQKVTMDVTQGQKG-- 62
Query: 65 YSAENL 70
AEN+
Sbjct: 63 LQAENV 68
>gi|320139464|gb|EFW31338.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
subsp. aureus MRSA131]
Length = 66
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G+DVF+H S + G +L +GQ V +D V
Sbjct: 1 MNNGTVKWFNSEKGFGFIEREN----GNDVFVHFSNIVGEGYKSLEDGQSVDFDIVDGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 G--EQATNVVAV 66
>gi|237739959|ref|ZP_04570440.1| cold shock protein [Fusobacterium sp. 2_1_31]
gi|237741555|ref|ZP_04572036.1| cold shock protein [Fusobacterium sp. 4_1_13]
gi|294782948|ref|ZP_06748274.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp.
1_1_41FAA]
gi|229421976|gb|EEO37023.1| cold shock protein [Fusobacterium sp. 2_1_31]
gi|229429203|gb|EEO39415.1| cold shock protein [Fusobacterium sp. 4_1_13]
gi|294481589|gb|EFG29364.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp.
1_1_41FAA]
Length = 66
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ +
Sbjct: 2 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+ ++
Sbjct: 57 -PQASNIVVIK 66
>gi|167966659|ref|ZP_02548936.1| cold shock protein B cspB [Mycobacterium tuberculosis H37Ra]
Length = 75
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF++ E G+DV++ SA+ G+ LT GQ V +
Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALTAGQRVEFGIASGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 56 G--PHALSLRLIEPPPS 70
>gi|119476408|ref|ZP_01616759.1| cold-shock domain family protein [marine gamma proteobacterium
HTCC2143]
gi|119450272|gb|EAW31507.1| cold-shock domain family protein [marine gamma proteobacterium
HTCC2143]
Length = 69
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G+IKW+N KG+GFI G D+F+H ++ G L EGQ V + V+
Sbjct: 4 RTTGTIKWFNNAKGFGFIA----QTEGADIFVHFRSIRGEGYKTLDEGQEVEFTVVEGAK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|260597574|ref|YP_003210145.1| Cold shock-like protein cspB [Cronobacter turicensis z3032]
gi|260216751|emb|CBA30171.1| Cold shock-like protein cspB [Cronobacter turicensis z3032]
Length = 70
Score = 81.6 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N DKG+GFI P DVF+H SA+ S LTEGQ V +
Sbjct: 6 NGSVKWFNADKGFGFIAPTD---GSKDVFVHFSAIQSDNFRTLTEGQQVEFSVENGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|329296308|ref|ZP_08253644.1| CspB [Plautia stali symbiont]
Length = 70
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFI+PE S+ DVF+H SA+ +L +GQ V
Sbjct: 7 GTVKWFNAEKGFGFISPEDSS---KDVFVHFSAIQGTDFRSLDDGQKVELSVENGSKG-- 61
Query: 65 YSAENLKLV 73
SA N+K +
Sbjct: 62 PSAVNVKGL 70
>gi|325106571|ref|YP_004267647.1| putative cold-shock protein C [Staphylococcus simulans bv.
staphylolyticus]
gi|324033744|gb|ADY16745.1| putative cold-shock protein C [Staphylococcus simulans bv.
staphylolyticus]
Length = 66
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N +KG+GFI E G DVF+H S +A G +L +GQ V +D V
Sbjct: 1 MNNGTVKWFNSEKGFGFIEREN----GSDVFVHFSGIAGEGYKSLEDGQNVDFDIVDGQR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--EQATNVVAI 66
>gi|299134245|ref|ZP_07027438.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|298590992|gb|EFI51194.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
Length = 71
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N ++GYGFI P+ G DVF+H +AV AGL NLTEGQ +T++ +
Sbjct: 1 MAMTGVVKFFNAERGYGFIKPDD---GGRDVFVHITAVEKAGLKNLTEGQHITFEVEPDK 57
Query: 61 ANGKYSAENLKL 72
A +L +
Sbjct: 58 KGKGPKAVDLVV 69
>gi|90962044|ref|YP_535960.1| cold shock protein [Lactobacillus salivarius UCC118]
gi|227891063|ref|ZP_04008868.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
gi|301300924|ref|ZP_07207096.1| cold shock-like protein CspE [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|90821238|gb|ABD99877.1| Cold shock protein [Lactobacillus salivarius UCC118]
gi|227867152|gb|EEJ74573.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
gi|300851523|gb|EFK79235.1| cold shock-like protein CspE [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 69
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ +N +KG+GFITP+ S DDVF+H SA+ + G L EGQ V + ++
Sbjct: 1 MILGTVHKFNREKGFGFITPDDSK---DDVFVHFSAIQTEGFKTLQEGQRVGFVTIEGKR 57
Query: 62 NGKYSAENLKLVPK 75
A N++L+
Sbjct: 58 G--PQAANVELISD 69
>gi|238784838|ref|ZP_04628839.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|238714254|gb|EEQ06265.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
Length = 70
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|330447711|ref|ZP_08311359.1| cold shock protein CspG [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491902|dbj|GAA05856.1| cold shock protein CspG [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 70
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +KW+N +KG+GFIT + DVF+H A+ S G L +GQ V++D Q
Sbjct: 5 NTGLVKWFNEEKGFGFITQDN---GAADVFVHFQAIVSDGFKTLMDGQKVSFDVEQGQKG 61
Query: 63 GKYSAENLKLV 73
A N+ +
Sbjct: 62 --LQAANVVAL 70
>gi|293609525|ref|ZP_06691827.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827977|gb|EFF86340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122795|gb|ADY82318.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2]
Length = 69
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G DVF H +A +G L EGQ VT+ Q
Sbjct: 7 GTVKWFNETKGFGFIQQDN----GPDVFAHFKEIAGSGFKTLHEGQRVTFTVTQGQKG-- 60
Query: 65 YSAENL 70
+A N+
Sbjct: 61 PNAVNI 66
>gi|70728544|ref|YP_258293.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5]
gi|68342843|gb|AAY90449.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5]
Length = 82
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+
Sbjct: 17 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 72
Query: 62 NGKYSAENL 70
AE++
Sbjct: 73 G--LQAEDV 79
>gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395258|gb|AAS03127.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 138
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 5 PTGKVKWYDADKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRRG 59
Query: 63 GKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 60 --PQALSLKLIEPPPS 73
>gi|119946183|ref|YP_943863.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864787|gb|ABM04264.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q
Sbjct: 5 EQGTVKWFNEAKGFGFIE----QASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG 60
Query: 63 GKYSAENLKLV 73
A+++ +
Sbjct: 61 --PQADSIVAL 69
>gi|40062711|gb|AAR37624.1| cold shock DNA-binding domain protein [uncultured marine
bacterium 314]
Length = 68
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N KGYGFI E DVF+H +AV AGL L EG +T++ +
Sbjct: 1 MSLKGKVKWFNGKKGYGFIEREDKE---KDVFVHHTAVRDAGLKYLNEGDELTFEVENGE 57
Query: 61 ANGKYSAENLKL 72
SA NL+
Sbjct: 58 KG--PSAVNLQK 67
>gi|325115241|emb|CBZ50796.1| lin-28 homolog B, related [Neospora caninum Liverpool]
Length = 133
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG+ KW++ KGYGFIT E G D+F+H+S + + G NL EG+ V + +Q +G
Sbjct: 5 RGTCKWFDSKKGYGFITAED----GTDLFVHQSEIRAEGFRNLAEGEQVEF-VIQTGNDG 59
Query: 64 KYSAENLK 71
+ A N+
Sbjct: 60 RKKAVNVT 67
>gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
gi|253800107|ref|YP_003033108.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
gi|254231179|ref|ZP_04924506.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
gi|289555348|ref|ZP_06444558.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605]
gi|289744597|ref|ZP_06503975.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
gi|298524364|ref|ZP_07011773.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308397434|ref|ZP_07492504.2| putative cold-shock DNA-binding domain protein [Mycobacterium
tuberculosis SUMu012]
gi|124600238|gb|EAY59248.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
gi|148720606|gb|ABR05231.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
gi|253321610|gb|ACT26213.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
gi|289439980|gb|EFD22473.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605]
gi|289685125|gb|EFD52613.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
gi|298494158|gb|EFI29452.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308366919|gb|EFP55770.1| putative cold-shock DNA-binding domain protein [Mycobacterium
tuberculosis SUMu012]
gi|323720694|gb|EGB29771.1| cold shock protein B cspB [Mycobacterium tuberculosis CDC1551A]
gi|328459845|gb|AEB05268.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 4207]
Length = 138
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 5 PTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIASGRRG 59
Query: 63 GKYSAENLKLVPKSSN 78
A +L+L+ +
Sbjct: 60 --PQALSLRLIEPPPS 73
>gi|152995290|ref|YP_001340125.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150836214|gb|ABR70190.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 156
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GF+T E GDDVF+H A+ G L EGQLV + + +
Sbjct: 91 QGTVKWFNSSKGFGFLTMEN----GDDVFVHYRAIRGRGRRFLVEGQLVRFYVTEGEKGK 146
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 147 --QAENVSII 154
>gi|149911179|ref|ZP_01899804.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
gi|149805780|gb|EDM65777.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
Length = 68
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E G DVF H SA+AS G L EGQ V + +
Sbjct: 5 QGTVKWFNEAKGFGFIEQEN----GPDVFAHFSAIASEGFKTLVEGQKVEFTVGEGQKG- 59
Query: 64 KYSAENLKLV 73
+AEN+ +
Sbjct: 60 -PNAENIVAI 68
>gi|28871129|ref|NP_793748.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|66044651|ref|YP_234492.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|71734613|ref|YP_275919.1| cold shock domain-contain protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|302064187|ref|ZP_07255728.1| cold-shock domain-contain protein [Pseudomonas syringae pv.
tomato K40]
gi|28854379|gb|AAO57443.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|63255358|gb|AAY36454.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
syringae B728a]
gi|71555166|gb|AAZ34377.1| cold shock domain family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320329669|gb|EFW85658.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330892234|gb|EGH24895.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
mori str. 301020]
gi|331009339|gb|EGH89395.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 73
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 6 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 60
Query: 64 KYSAENL 70
AE++
Sbjct: 61 -LQAEDV 66
>gi|145219125|ref|YP_001129834.1| cold-shock DNA-binding protein family protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205289|gb|ABP36332.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides
DSM 265]
Length = 69
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI G DVF+H SA+ +G L EGQ VT + Q D
Sbjct: 7 GTVKWFNEEKGYGFIQ----QSEGKDVFVHYSAINGSGRKTLVEGQKVTMEVSQGDKG-- 60
Query: 65 YSAENLKLV 73
A N+ +
Sbjct: 61 LQAGNVTPL 69
>gi|319403835|emb|CBI77421.1| putative cold shock protein y4cH [Bartonella rochalimae ATCC
BAA-1498]
gi|319406844|emb|CBI80479.1| putative cold shock protein y4cH [Bartonella sp. 1-1C]
Length = 71
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N +KG+GFI P+ D+F+H S V ++GL L + Q V++D +
Sbjct: 1 MAQTGEVKFFNNNKGFGFIKPDN---GSTDIFVHISDVQASGLSGLNDAQKVSFDIEPDR 57
Query: 61 ANGKYSAENLKLVP 74
A N+ ++
Sbjct: 58 RGKGPKAININVMS 71
>gi|238019427|ref|ZP_04599853.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC
17748]
gi|313893700|ref|ZP_07827267.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str.
F0412]
gi|237864126|gb|EEP65416.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC
17748]
gi|313441714|gb|EFR60139.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str.
F0412]
Length = 65
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V +
Sbjct: 3 GKVKWFSAEKGYGFIERED----GSDVFVHYSAIQDEGFKSLTEGQNVEFDIVDGNRG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQAANV 62
>gi|52425199|ref|YP_088336.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307251|gb|AAU37751.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
Length = 70
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFITP D+F+H S++ +L EG V Y+
Sbjct: 5 NGLVKWFNSDKGFGFITPAD---GSKDLFVHFSSILGNNYRSLNEGDRVEYNVENTQRG- 60
Query: 64 KYSAENLKLVP 74
+A + ++
Sbjct: 61 -PAAVEVAVIK 70
>gi|307132939|ref|YP_003884955.1| Cold shock protein [Dickeya dadantii 3937]
gi|306530468|gb|ADN00399.1| Cold shock protein [Dickeya dadantii 3937]
Length = 70
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGSVKWFNETKGFGFITPAD---GSKDVFVHFSAIQSDSFKTLYEGQKVEFVIGNGPKG- 61
Query: 64 KYSAENL 70
SAEN+
Sbjct: 62 -PSAENV 67
>gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 303
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFI + D F+H SAV AGL +L EG ++++ + D GK
Sbjct: 237 GTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 292
Query: 65 YSAENLKLVPK 75
Y+A NL +
Sbjct: 293 YAAVNLAQLDD 303
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GF+ + G+DVF+H SAV AGL L EGQ +++ V D G
Sbjct: 137 TGVVKFFNSQKGFGFVVRDD---GGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 191
Query: 64 KYSAENL 70
+ SA NL
Sbjct: 192 RVSATNL 198
>gi|289566250|ref|ZP_06446682.1| cold shock protein CspB [Enterococcus faecium D344SRF]
gi|293553482|ref|ZP_06674110.1| cold-shock protein [Enterococcus faecium E1039]
gi|293559343|ref|ZP_06675885.1| cold shock protein [Enterococcus faecium E1162]
gi|293569841|ref|ZP_06680928.1| cold-shock protein [Enterococcus faecium E1071]
gi|294616589|ref|ZP_06696365.1| cold-shock protein [Enterococcus faecium E1636]
gi|294617895|ref|ZP_06697504.1| cold shock protein [Enterococcus faecium E1679]
gi|294622251|ref|ZP_06701305.1| cold shock protein [Enterococcus faecium U0317]
gi|314939747|ref|ZP_07846969.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133a04]
gi|314941752|ref|ZP_07848629.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133C]
gi|314948297|ref|ZP_07851689.1| putative major cold shock protein CspA [Enterococcus faecium
TX0082]
gi|314952385|ref|ZP_07855392.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133A]
gi|314991996|ref|ZP_07857449.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133B]
gi|314995706|ref|ZP_07860796.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133a01]
gi|289161957|gb|EFD09825.1| cold shock protein CspB [Enterococcus faecium D344SRF]
gi|291587589|gb|EFF19466.1| cold-shock protein [Enterococcus faecium E1071]
gi|291590539|gb|EFF22272.1| cold-shock protein [Enterococcus faecium E1636]
gi|291595840|gb|EFF27124.1| cold shock protein [Enterococcus faecium E1679]
gi|291598222|gb|EFF29317.1| cold shock protein [Enterococcus faecium U0317]
gi|291602359|gb|EFF32583.1| cold-shock protein [Enterococcus faecium E1039]
gi|291606707|gb|EFF36099.1| cold shock protein [Enterococcus faecium E1162]
gi|313590097|gb|EFR68942.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133a01]
gi|313593431|gb|EFR72276.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133B]
gi|313595502|gb|EFR74347.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133A]
gi|313599430|gb|EFR78273.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133C]
gi|313640976|gb|EFS05556.1| putative major cold shock protein CspA [Enterococcus faecium
TX0133a04]
gi|313645278|gb|EFS09858.1| putative major cold shock protein CspA [Enterococcus faecium
TX0082]
Length = 80
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KGYGFI+ + + +++F+H +A+ G L E Q+V ++ ++ +
Sbjct: 5 TTGIVKWFDNKKGYGFISYDDT----EEIFVHFTAIEEEGFKTLEENQVVEFEIIEGNRG 60
Query: 63 GKYSAENLKL 72
A ++K
Sbjct: 61 --TQAAHVKK 68
>gi|226954179|ref|ZP_03824643.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|294650207|ref|ZP_06727581.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194]
gi|226835048|gb|EEH67431.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|292823913|gb|EFF82742.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194]
Length = 69
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + SG DVF H S + S G L EGQ V++ Q
Sbjct: 6 TGTVKWFNETKGFGFIQAD----SGQDVFAHFSEIQSNGFKVLHEGQRVSFVLGQGKKG- 60
Query: 64 KYSAENLKLV 73
A ++ ++
Sbjct: 61 -PQATSISVI 69
>gi|227494398|ref|ZP_03924714.1| cold shock protein [Actinomyces coleocanis DSM 15436]
gi|226832132|gb|EEH64515.1| cold shock protein [Actinomyces coleocanis DSM 15436]
Length = 125
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+++ DKG+GFI + G+ VFLH SA+ L + G V + +
Sbjct: 1 MPTGKVKFFDADKGFGFIESDD----GESVFLHASAL-PENLKHPKNGARVEFSMIDGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ L+P++ +
Sbjct: 56 G--PQAIHVNLLPEAPS 70
>gi|187928399|ref|YP_001898886.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12J]
gi|241662975|ref|YP_002981335.1| cold-shock DNA-binding domain-containing protein [Ralstonia
pickettii 12D]
gi|309782106|ref|ZP_07676836.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
gi|187725289|gb|ACD26454.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
gi|240865002|gb|ACS62663.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|308919172|gb|EFP64839.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
Length = 67
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S V G +L EGQ V Y
Sbjct: 1 METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEVQGNGFKSLQEGQKVRYVAGVGQK 57
Query: 62 NGKYSAENLKLV 73
+A ++ +
Sbjct: 58 G--PAATKIEAI 67
>gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|299799810|gb|ADJ50185.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
Length = 128
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+T + G DV++ ++A+ G+ L GQ + +
Sbjct: 1 MPTGKVKWYDAEKGFGFVTQD----GGADVYIRKAALPQ-GVEGLKAGQRLEFGVADGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 G--PQALSVRLLDPPPS 70
>gi|269797859|ref|YP_003311759.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM
2008]
gi|282848848|ref|ZP_06258238.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC
17745]
gi|294791752|ref|ZP_06756900.1| conserved domain protein [Veillonella sp. 6_1_27]
gi|294793613|ref|ZP_06758750.1| conserved domain protein [Veillonella sp. 3_1_44]
gi|269094488|gb|ACZ24479.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM
2008]
gi|282581353|gb|EFB86746.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC
17745]
gi|294455183|gb|EFG23555.1| conserved domain protein [Veillonella sp. 3_1_44]
gi|294456982|gb|EFG25344.1| conserved domain protein [Veillonella sp. 6_1_27]
Length = 65
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V ++ V +
Sbjct: 3 GKVKWFSAEKGYGFIERED----GSDVFVHYSAIQDEGFKSLTEGQNVEFEIVDGNRG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQAANV 62
>gi|304320970|ref|YP_003854613.1| Cold shock protein [Parvularcula bermudensis HTCC2503]
gi|303299872|gb|ADM09471.1| Cold shock protein [Parvularcula bermudensis HTCC2503]
Length = 69
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI PE DVF+H +A+ +GL L EG VT++ ++
Sbjct: 1 MATGTVKFFNTQKGFGFIQPED---GSSDVFVHATALERSGLAPLNEGDKVTFETARDKR 57
Query: 62 NGKYSAENLK 71
+GK + ++
Sbjct: 58 SGKMAVSTIQ 67
>gi|332284619|ref|YP_004416530.1| cold shock-like protein [Pusillimonas sp. T7-7]
gi|330428572|gb|AEC19906.1| cold shock-like protein [Pusillimonas sp. T7-7]
Length = 69
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ G +KW+N DKG+GFI PE G D+F H S + +G +L E Q V++ +
Sbjct: 1 MKTEFGIVKWFNNDKGFGFIMPES---GGKDLFAHYSEIQGSGHKSLEENQRVSFVASEG 57
Query: 60 DANGKYSAENLKLV 73
A N+++V
Sbjct: 58 QKG--PQASNIQVV 69
>gi|291616468|ref|YP_003519210.1| CspB [Pantoea ananatis LMG 20103]
gi|291151498|gb|ADD76082.1| CspB [Pantoea ananatis LMG 20103]
gi|327392905|dbj|BAK10327.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
Length = 70
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N +KG+GFI+P+ DVF+H SA+ +L EGQ V + V+N A G
Sbjct: 6 RGTVKWFNAEKGFGFISPQD---GSKDVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61
Query: 64 KYSAENL 70
+A +
Sbjct: 62 PAAANVV 68
>gi|218902814|ref|YP_002450648.1| cold shock protein CspB [Bacillus cereus AH820]
gi|218536202|gb|ACK88600.1| cold shock protein CspB [Bacillus cereus AH820]
Length = 65
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G
Sbjct: 2 QGKVKWFNNEKGFGFIEME----GADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNR-G 56
Query: 64 KYSAENLKL 72
A +KL
Sbjct: 57 PQVANVVKL 65
>gi|294139961|ref|YP_003555939.1| cold shock-like protein cspE [Shewanella violacea DSS12]
gi|293326430|dbj|BAJ01161.1| cold shock-like protein cspE [Shewanella violacea DSS12]
Length = 68
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ +G++KW+N DKG+GFITPE D+F+H S + S G L +GQ V Y+ Q
Sbjct: 1 MSKGTVKWFNADKGFGFITPED---GSKDLFVHHSEIQSGGDYATLNDGQAVEYEVGQGQ 57
Query: 61 ANGKYSAENLKLV 73
A + V
Sbjct: 58 KG--PCANKVVAV 68
>gi|153955581|ref|YP_001396346.1| hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555]
gi|219855966|ref|YP_002473088.1| hypothetical protein CKR_2623 [Clostridium kluyveri NBRC 12016]
gi|146348439|gb|EDK34975.1| Hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555]
gi|219569690|dbj|BAH07674.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 65
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFIT E G+D+F H S + S G L EGQ V++D +
Sbjct: 2 TGTVKWFNGNKGFGFITGED----GNDIFAHFSQINSQGYKTLEEGQKVSFDEGRGQKG- 56
Query: 64 KYSAENLKLV 73
AEN+ ++
Sbjct: 57 -TQAENITVL 65
>gi|261212974|ref|ZP_05927258.1| cold shock protein CspA [Vibrio sp. RC341]
gi|260838039|gb|EEX64716.1| cold shock protein CspA [Vibrio sp. RC341]
Length = 66
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G+DVF+H +++ S G LTEGQ V++ Q
Sbjct: 2 TGSVKWFNETKGFGFLTQDN---GGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQGKKG- 57
Query: 64 KYSAENL 70
A N+
Sbjct: 58 -PQASNV 63
>gi|166711808|ref|ZP_02243015.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 69
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 7 GIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG-- 60
Query: 65 YSAENLKLV 73
A+ ++ V
Sbjct: 61 MQADQVQAV 69
>gi|84624223|ref|YP_451595.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84368163|dbj|BAE69321.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 69
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 6 NGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG- 60
Query: 64 KYSAENLKLV 73
A+ ++ V
Sbjct: 61 -MQADQVQAV 69
>gi|29376277|ref|NP_815431.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
gi|227518915|ref|ZP_03948964.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis TX0104]
gi|227553533|ref|ZP_03983582.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis HH22]
gi|229545662|ref|ZP_04434387.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis TX1322]
gi|229549854|ref|ZP_04438579.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis ATCC 29200]
gi|255972638|ref|ZP_05423224.1| cold shock protein [Enterococcus faecalis T1]
gi|256619219|ref|ZP_05476065.1| cold shock protein [Enterococcus faecalis ATCC 4200]
gi|256762655|ref|ZP_05503235.1| cold shock protein [Enterococcus faecalis T3]
gi|256853281|ref|ZP_05558651.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
gi|256959135|ref|ZP_05563306.1| cold shock protein [Enterococcus faecalis DS5]
gi|256961771|ref|ZP_05565942.1| cold shock protein [Enterococcus faecalis Merz96]
gi|256964969|ref|ZP_05569140.1| cold shock protein [Enterococcus faecalis HIP11704]
gi|257079167|ref|ZP_05573528.1| cold shock protein [Enterococcus faecalis JH1]
gi|257082397|ref|ZP_05576758.1| cold-shock domain-containing protein [Enterococcus faecalis
E1Sol]
gi|257085029|ref|ZP_05579390.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
gi|257087012|ref|ZP_05581373.1| cold shock protein [Enterococcus faecalis D6]
gi|257090040|ref|ZP_05584401.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257416246|ref|ZP_05593240.1| cold shock protein [Enterococcus faecalis AR01/DG]
gi|257419451|ref|ZP_05596445.1| cold-shock protein [Enterococcus faecalis T11]
gi|257422457|ref|ZP_05599447.1| cold shock protein [Enterococcus faecalis X98]
gi|293383477|ref|ZP_06629390.1| cold-shock domain protein [Enterococcus faecalis R712]
gi|293388868|ref|ZP_06633354.1| cold-shock domain protein [Enterococcus faecalis S613]
gi|294779384|ref|ZP_06744785.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
gi|300860204|ref|ZP_07106291.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11]
gi|307269537|ref|ZP_07550876.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|307273064|ref|ZP_07554310.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|307275813|ref|ZP_07556952.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|307289264|ref|ZP_07569220.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
gi|307291836|ref|ZP_07571707.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|312901869|ref|ZP_07761134.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
gi|312903474|ref|ZP_07762654.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|312907694|ref|ZP_07766685.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
gi|312910312|ref|ZP_07769159.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
gi|312951656|ref|ZP_07770551.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|29343740|gb|AAO81501.1| cold-shock domain family protein [Enterococcus faecalis V583]
gi|227073604|gb|EEI11567.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis TX0104]
gi|227177338|gb|EEI58310.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis HH22]
gi|229305123|gb|EEN71119.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis ATCC 29200]
gi|229309230|gb|EEN75217.1| CspC family cold shock transcriptional regulator [Enterococcus
faecalis TX1322]
gi|255963656|gb|EET96132.1| cold shock protein [Enterococcus faecalis T1]
gi|256598746|gb|EEU17922.1| cold shock protein [Enterococcus faecalis ATCC 4200]
gi|256683906|gb|EEU23601.1| cold shock protein [Enterococcus faecalis T3]
gi|256711740|gb|EEU26778.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
gi|256949631|gb|EEU66263.1| cold shock protein [Enterococcus faecalis DS5]
gi|256952267|gb|EEU68899.1| cold shock protein [Enterococcus faecalis Merz96]
gi|256955465|gb|EEU72097.1| cold shock protein [Enterococcus faecalis HIP11704]
gi|256987197|gb|EEU74499.1| cold shock protein [Enterococcus faecalis JH1]
gi|256990427|gb|EEU77729.1| cold-shock domain-containing protein [Enterococcus faecalis
E1Sol]
gi|256993059|gb|EEU80361.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
gi|256995042|gb|EEU82344.1| cold shock protein [Enterococcus faecalis D6]
gi|256998852|gb|EEU85372.1| cold-shock protein [Enterococcus faecalis CH188]
gi|257158074|gb|EEU88034.1| cold shock protein [Enterococcus faecalis ARO1/DG]
gi|257161279|gb|EEU91239.1| cold-shock protein [Enterococcus faecalis T11]
gi|257164281|gb|EEU94241.1| cold shock protein [Enterococcus faecalis X98]
gi|291079268|gb|EFE16632.1| cold-shock domain protein [Enterococcus faecalis R712]
gi|291081793|gb|EFE18756.1| cold-shock domain protein [Enterococcus faecalis S613]
gi|294453513|gb|EFG21914.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
gi|295113106|emb|CBL31743.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
gi|300849243|gb|EFK76993.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11]
gi|306497102|gb|EFM66648.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
gi|306499973|gb|EFM69334.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
gi|306507505|gb|EFM76636.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
gi|306510049|gb|EFM79073.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
gi|306514157|gb|EFM82733.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
gi|310626722|gb|EFQ10005.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
gi|310630373|gb|EFQ13656.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
gi|310633350|gb|EFQ16633.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
gi|311289585|gb|EFQ68141.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
gi|311291062|gb|EFQ69618.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
gi|315027882|gb|EFT39814.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
gi|315029541|gb|EFT41473.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
gi|315032014|gb|EFT43946.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
gi|315037138|gb|EFT49070.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
gi|315144965|gb|EFT88981.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
gi|315147421|gb|EFT91437.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
gi|315150754|gb|EFT94770.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
gi|315152323|gb|EFT96339.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
gi|315156124|gb|EFU00141.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
gi|315158234|gb|EFU02251.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
gi|315162357|gb|EFU06374.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
gi|315163878|gb|EFU07895.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
gi|315168876|gb|EFU12893.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
gi|315169617|gb|EFU13634.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
gi|315172434|gb|EFU16451.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
gi|315576063|gb|EFU88254.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
gi|315577830|gb|EFU90021.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
gi|315580638|gb|EFU92829.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
gi|323480885|gb|ADX80324.1| cold shock protein CspD [Enterococcus faecalis 62]
gi|327535290|gb|AEA94124.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
gi|329571878|gb|EGG53556.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
Length = 68
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ KGYGFI D++F+H +A+ G +L E Q V ++ ++ +
Sbjct: 1 MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNR 56
Query: 62 NGKYSAENLKLVP 74
A ++K +
Sbjct: 57 G--LQAAHVKKID 67
>gi|257453190|ref|ZP_05618489.1| cold shock protein [Fusobacterium sp. 3_1_5R]
gi|257467346|ref|ZP_05631657.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
gi|315918476|ref|ZP_07914716.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
gi|317059724|ref|ZP_07924209.1| cold shock protein [Fusobacterium sp. 3_1_5R]
gi|313685400|gb|EFS22235.1| cold shock protein [Fusobacterium sp. 3_1_5R]
gi|313692351|gb|EFS29186.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 66
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ VT+D +
Sbjct: 2 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVTFDITEGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+ +V
Sbjct: 57 -PQASNIVIVK 66
>gi|242247545|ref|NP_001156314.1| RNA-binding protein lin-28-like [Acyrthosiphon pisum]
gi|239792625|dbj|BAH72634.1| ACYPI009849 [Acyrthosiphon pisum]
Length = 250
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G KW+N KG+GF+TP+ G DVF+H+ + G +L E + V + ++D
Sbjct: 72 QGICKWFNSKKGFGFVTPDD---GGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESDKG 127
>gi|331006239|ref|ZP_08329559.1| Cold shock protein CspE [gamma proteobacterium IMCC1989]
gi|330419928|gb|EGG94274.1| Cold shock protein CspE [gamma proteobacterium IMCC1989]
Length = 69
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H SA+ S G L EGQ V +
Sbjct: 5 TTGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSDGFKTLMEGQKVQFVVTDGQKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --PQAENIVAI 69
>gi|322436511|ref|YP_004218723.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321164238|gb|ADW69943.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 70
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G +KW+N KGYGF+ + G DVF H SAV + G +L EG V +D + D+
Sbjct: 4 YKGQVKWFNNAKGYGFLGRD----GGSDVFCHYSAVQTDGYKSLKEGDEVEFDIIDGDS- 58
Query: 63 GKYSAENL 70
GK A+ +
Sbjct: 59 GKPQADKV 66
>gi|152997268|ref|YP_001342103.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150838192|gb|ABR72168.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 87
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H GS+KW+N KGYGFI E +D+F+H SA+ G L GQ VT++ +
Sbjct: 1 MHHGSVKWFNNAKGYGFIVSEDF---NEDLFIHYSAINIEGYKTLKAGQAVTFNVEPGER 57
Query: 62 NGKYSAENLKLVPK 75
A +
Sbjct: 58 G--LHAIEINPTSP 69
>gi|237736040|ref|ZP_04566521.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817]
gi|229421854|gb|EEO36901.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817]
Length = 71
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GF+T E G D F+H + + G L EGQ VT++ +
Sbjct: 6 MLKGTVKWFNKEKGFGFVTSED----GADYFVHFTGIVGEGFRTLEEGQAVTFEVTEGKK 61
Query: 62 NGKYSAENLKL 72
A ++K+
Sbjct: 62 G--PMAVDVKV 70
>gi|315126911|ref|YP_004068914.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Pseudoalteromonas sp.
SM9913]
gi|315015425|gb|ADT68763.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Pseudoalteromonas sp.
SM9913]
Length = 67
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N KG+GFI E G DVF+H SA+ +G L+EGQ VT+ Q
Sbjct: 1 MSVTGKVKFFNEAKGFGFIEQEN----GPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56
Query: 61 ANGKYSAENLKL 72
AEN+++
Sbjct: 57 KG--PEAENVEV 66
>gi|212716929|ref|ZP_03325057.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum
DSM 16992]
gi|225352748|ref|ZP_03743771.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|212660214|gb|EEB20789.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum
DSM 16992]
gi|225156355|gb|EEG69924.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 129
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ +KGYGFI E G DVFL +A+ G+ L +G V Y V+
Sbjct: 1 MPSGRVRWFDANKGYGFIQNE----QGADVFLPAAAL-PEGVKTLRKGAKVEYSVVEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L LV + +
Sbjct: 56 G--PQAMGLTLVASAPS 70
>gi|51246052|ref|YP_065936.1| cold-shock protein [Desulfotalea psychrophila LSv54]
gi|50877089|emb|CAG36929.1| probable cold-shock protein [Desulfotalea psychrophila LSv54]
Length = 66
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E G DVF+H SA+ G +LTEG V ++ +
Sbjct: 1 MAEGTVKWFNDAKGFGFIEQE----GGQDVFVHYSAIGGEGFKSLTEGSRVNFEIIDGPK 56
Query: 62 NGKYSAENL 70
+A+N+
Sbjct: 57 G--PAADNV 63
>gi|88703592|ref|ZP_01101308.1| cold-shock domain family protein [Congregibacter litoralis KT71]
gi|88702306|gb|EAQ99409.1| cold-shock domain family protein [Congregibacter litoralis KT71]
Length = 70
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFIT DVF+H ++ G L EG+ V + +
Sbjct: 4 RKNGTVKWFNNAKGFGFIT---GESFDGDVFVHFRSIQGDGFRTLNEGEEVEFTLTEGPK 60
Query: 62 NGKYSAENLKLV 73
AE++ +
Sbjct: 61 G--LQAEDVAKL 70
>gi|117926229|ref|YP_866846.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
MC-1]
gi|117609985|gb|ABK45440.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
Length = 69
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KGYGFI+ E G DVF+H SA+ +G LT+GQ V +D VQ
Sbjct: 7 GTVKFFNEQKGYGFISRED----GSDVFVHFSAIQGSGFRTLTQGQKVEFDTVQGKKG-- 60
Query: 65 YSAENLKLV 73
AEN+ V
Sbjct: 61 LQAENVTGV 69
>gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
gi|118568263|gb|ABL03014.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
Length = 184
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 52 PTGKVKWYDSDKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRRG 106
Query: 63 GKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 107 --PQALSLKLLDPPPS 120
>gi|296272840|ref|YP_003655471.1| cold-shock DNA-binding domain-containing protein [Arcobacter
nitrofigilis DSM 7299]
gi|296097014|gb|ADG92964.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis
DSM 7299]
Length = 72
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFI E G DVF+H + S G +L EGQ VT++ +
Sbjct: 6 NGTVKWFNSEKGFGFIEQEN---GGKDVFVHYRQINSTGYGRVSLNEGQKVTFEVAEGQK 62
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 63 G--PQAENVTAL 72
>gi|238796661|ref|ZP_04640167.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969]
gi|238719392|gb|EEQ11202.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969]
Length = 66
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 2 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGTEYKTLDEGQNVEFSIEQGQKG- 57
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 58 -PSAVNVVAL 66
>gi|300309840|ref|YP_003773932.1| cold-shock transcription regulator protein [Herbaspirillum
seropedicae SmR1]
gi|300072625|gb|ADJ62024.1| cold-shock transcription regulator protein [Herbaspirillum
seropedicae SmR1]
Length = 70
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ G DVF H + S G +L+E Q V++D
Sbjct: 4 QTGVVKWFNDAKGFGFITPD---AGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60
Query: 63 GKYSAENLKLV 73
K A N+K++
Sbjct: 61 EK--ATNIKVI 69
>gi|89053585|ref|YP_509036.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
CCS1]
gi|88863134|gb|ABD54011.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
Length = 68
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ G DVF+H SAV AG +L + +TY+ +
Sbjct: 1 MPSGTVKWFNTTKGFGFIAPDD---GGKDVFVHISAVERAGWSDLPDDTKLTYELREG-R 56
Query: 62 NGKYSAENLKLV 73
+G+ SA L V
Sbjct: 57 DGRESAVELVKV 68
>gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 258
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFI + D F+H SAV AGL +L EG ++++ + D GK
Sbjct: 192 GTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 247
Query: 65 YSAENLKLVPK 75
Y+A NL +
Sbjct: 248 YAAVNLAQLDD 258
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GF+ + G+DVF+H SAV AGL L EGQ +++ V D G
Sbjct: 92 TGVVKFFNSQKGFGFVVRDD---GGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 146
Query: 64 KYSAENL 70
+ SA NL
Sbjct: 147 RVSATNL 153
>gi|241760852|ref|ZP_04758941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374471|gb|EER63932.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 257
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFI + D F+H SAV AGL +L EG ++++ + D GK
Sbjct: 191 GTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 246
Query: 65 YSAENLKLVPK 75
Y+A NL +
Sbjct: 247 YAAVNLAQLDD 257
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GF+ + G+DVF+H SAV AGL L EGQ +++ V D G
Sbjct: 91 TGVVKFFNSQKGFGFVVRDD---GGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 145
Query: 64 KYSAENL 70
+ SA NL
Sbjct: 146 RVSATNL 152
>gi|94495604|ref|ZP_01302184.1| cold shock protein [Sphingomonas sp. SKA58]
gi|94424992|gb|EAT10013.1| cold shock protein [Sphingomonas sp. SKA58]
Length = 153
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++K++N KG+GFI + D F+H SAV AG+ L EG + ++ + D
Sbjct: 84 RASGTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGMAALNEGDRLDFEL-EVDR 139
Query: 62 NGKYSAENLK 71
GKY+A NL+
Sbjct: 140 RGKYAAVNLQ 149
Score = 37.7 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+F+H SAV AGL L EGQ + + V D GK SA +L +
Sbjct: 1 MFVHISAVEQAGLTGLAEGQPLGFTLV--DRGGKVSATDLVI 40
>gi|83814144|ref|YP_445684.1| putative cold shock-like protein cspG [Salinibacter ruber DSM
13855]
gi|83755538|gb|ABC43651.1| putative cold shock-like protein cspG [Salinibacter ruber DSM
13855]
Length = 163
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ RG+IKW++ +KG+GFI PE E G+DVFLH S + + G +L EGQ V ++ + +
Sbjct: 95 MQRGTIKWFDTEKGFGFIEPE---EGGEDVFLHVSNITGSTGGDDLREGQTVAFETERTE 151
Query: 61 ANGKYSAENLKLV 73
SA N V
Sbjct: 152 KG--LSALNASPV 162
>gi|258622545|ref|ZP_05717567.1| cold shock domain family protein [Vibrio mimicus VM573]
gi|258625538|ref|ZP_05720427.1| cold shock domain family protein [Vibrio mimicus VM603]
gi|262164476|ref|ZP_06032214.1| cold shock protein CspA [Vibrio mimicus VM223]
gi|262173410|ref|ZP_06041087.1| cold shock protein CspA [Vibrio mimicus MB-451]
gi|262403011|ref|ZP_06079571.1| cold shock protein CspA [Vibrio sp. RC586]
gi|258582182|gb|EEW07042.1| cold shock domain family protein [Vibrio mimicus VM603]
gi|258585245|gb|EEW09972.1| cold shock domain family protein [Vibrio mimicus VM573]
gi|261890768|gb|EEY36755.1| cold shock protein CspA [Vibrio mimicus MB-451]
gi|262026856|gb|EEY45523.1| cold shock protein CspA [Vibrio mimicus VM223]
gi|262350510|gb|EEY99643.1| cold shock protein CspA [Vibrio sp. RC586]
Length = 70
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G+DVF+H +++ S G LTEGQ V++ Q
Sbjct: 6 TGSVKWFNETKGFGFLTQDN---GGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQGKKG- 61
Query: 64 KYSAENL 70
A N+
Sbjct: 62 -PQASNV 67
>gi|257791070|ref|YP_003181676.1| cold-shock DNA-binding domain-containing protein [Eggerthella
lenta DSM 2243]
gi|317488206|ref|ZP_07946777.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325830873|ref|ZP_08164257.1| cold shock protein CspD [Eggerthella sp. HGA1]
gi|257474967|gb|ACV55287.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM
2243]
gi|316912711|gb|EFV34249.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325487280|gb|EGC89723.1| cold shock protein CspD [Eggerthella sp. HGA1]
Length = 67
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW++ +KGYGFI+ E G+D+F+H S + G +L E V + + + +
Sbjct: 1 MSQGTVKWFSSEKGYGFISQEN----GEDLFVHFSEIQGDGYKSLDENAKVEF-VIASGS 55
Query: 62 NGKYSAENLKLV 73
NGK A + ++
Sbjct: 56 NGKSQATQVCVL 67
>gi|315282229|ref|ZP_07870683.1| conserved domain protein [Listeria marthii FSL S4-120]
gi|313614131|gb|EFR87821.1| conserved domain protein [Listeria marthii FSL S4-120]
Length = 66
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D +
Sbjct: 1 MEQGTVKNPNAEKGFGFIEREN----GDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQR 56
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 57 G--PQAANVQK 65
>gi|307721642|ref|YP_003892782.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
DSM 16294]
gi|306979735|gb|ADN09770.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
DSM 16294]
Length = 72
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQND 60
G++KW+N DKG+GFI E G DVF+H + G +L EGQ VT++ Q D
Sbjct: 5 QNGTVKWFNSDKGFGFIEVED---GGKDVFVHYRQINDNGHSRVSLDEGQKVTFEIGQGD 61
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 62 KG--PQAENVTGL 72
>gi|294648554|ref|ZP_06726022.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
gi|292825556|gb|EFF84291.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
Length = 71
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V + Q
Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQQVEFSVAQGQKG- 62
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 63 -PNAVNIVAI 71
>gi|194337522|ref|YP_002019316.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309999|gb|ACF44699.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 74
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW+N KG+GFI P+ G DVF+H + + +GL L E V YD V+
Sbjct: 6 MADTGTVKWFNKMKGFGFIIPDN---GGADVFVHINELEKSGLATLNEADKVKYDMVE-- 60
Query: 61 ANGKYSAENLKLVP 74
NGK +A N++L+
Sbjct: 61 KNGKVAAGNIQLLK 74
>gi|168184293|ref|ZP_02618957.1| major cold shock protein [Clostridium botulinum Bf]
gi|187779961|ref|ZP_02996434.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC
15579]
gi|237794738|ref|YP_002862290.1| major cold shock protein CspA [Clostridium botulinum Ba4 str.
657]
gi|182672649|gb|EDT84610.1| major cold shock protein [Clostridium botulinum Bf]
gi|187773586|gb|EDU37388.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC
15579]
gi|229263133|gb|ACQ54166.1| major cold shock protein CspA [Clostridium botulinum Ba4 str.
657]
Length = 67
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G++KW+N +KG+GFI E DVF+H SA+ NL EGQ V ++ +
Sbjct: 1 MKTGTVKWFNSEKGFGFIEVE----GEKDVFVHFSAIQGDEPRKNLEEGQKVEFEVEEGQ 56
Query: 61 ANGKYSAENLKL 72
G +A +KL
Sbjct: 57 K-GPQAANVIKL 67
>gi|58038548|ref|YP_190512.1| putative transcriptional regulator cold shock protein
[Gluconobacter oxydans 621H]
gi|58000962|gb|AAW59856.1| Putative transcriptional regulator cold shock protein
[Gluconobacter oxydans 621H]
Length = 228
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KWYN KG+GFITPE G D+F+H SA+ +GL L EGQ + VQ G
Sbjct: 164 RGTVKWYNATKGFGFITPES---GGKDIFVHASALERSGLPTLDEGQTINVKVVQGQK-G 219
Query: 64 KYSAE 68
+AE
Sbjct: 220 PEAAE 224
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N +KG+GF+ D+FLH +A+ +AG+ N+ G V Q G+
Sbjct: 63 RVKWFNTEKGFGFVELSD---GSGDIFLHANALTNAGVSNVNPGATVVVRIGQGPK-GRQ 118
Query: 66 SAENLKLVPKSSN 78
AE L + ++
Sbjct: 119 VAEVLSVDESTAE 131
>gi|225174262|ref|ZP_03728261.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225170047|gb|EEG78842.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 65
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI T G+DVF+H SA+ + G NL EGQ V++D V+ +
Sbjct: 2 TGKVKWFNSDKGFGFIE----TSEGNDVFVHFSAIQAEGFKNLEEGQDVSFDVVEGNRG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -PQAANV 62
>gi|82701971|ref|YP_411537.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
multiformis ATCC 25196]
gi|82410036|gb|ABB74145.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
ATCC 25196]
Length = 69
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ DKG+GFIT + E G D+F H S++ G L E Q VT+D V
Sbjct: 4 ETGIVKWFSDDKGFGFITSD---EGGKDLFAHFSSIVGEGFKTLQEAQRVTFDVVSGPKG 60
Query: 63 GKYSAENLKL 72
A N++
Sbjct: 61 --LQASNIRP 68
>gi|229591581|ref|YP_002873700.1| major cold shock protein [Pseudomonas fluorescens SBW25]
gi|229363447|emb|CAY50649.1| major cold shock protein [Pseudomonas fluorescens SBW25]
Length = 70
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 60
Query: 62 NGKYSAENLK 71
A ++
Sbjct: 61 G--MQAAQVR 68
>gi|150378053|ref|YP_001314648.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150032600|gb|ABR64715.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 67
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++ DKG+GFITP+ G DVF+H SA+ AG +L +GQ V+Y+ Q+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFAG--SLQDGQKVSYELGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ +
Sbjct: 56 TGKSKAENVSAL 67
>gi|119946714|ref|YP_944394.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119865318|gb|ABM04795.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q
Sbjct: 5 EQGTVKWFNEAKGFGFIE----QASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQGQKG 60
Query: 63 GKYSAENL 70
A+++
Sbjct: 61 --PQADSV 66
>gi|26987835|ref|NP_743260.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
gi|104780430|ref|YP_606928.1| cold shock protein CapB [Pseudomonas entomophila L48]
gi|148546382|ref|YP_001266484.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
putida F1]
gi|325275204|ref|ZP_08141171.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
gi|24982535|gb|AAN66724.1|AE016300_9 cold-shock domain family protein [Pseudomonas putida KT2440]
gi|95109417|emb|CAK14117.1| cold shock protein CapB [Pseudomonas entomophila L48]
gi|148510440|gb|ABQ77300.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
gi|313497465|gb|ADR58831.1| CapB [Pseudomonas putida BIRD-1]
gi|324099691|gb|EGB97570.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 69
Score = 80.9 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N +KGYGFITP +SGDD+F+H A+ + G L EGQ VT+ +
Sbjct: 4 RQSGVVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTFVATRGQK 59
Query: 62 NGKYSAENLKL 72
AE +++
Sbjct: 60 G--MQAEEVQI 68
>gi|255319459|ref|ZP_05360673.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|262378517|ref|ZP_06071674.1| cold shock domain-containing protein CspD [Acinetobacter
radioresistens SH164]
gi|255303399|gb|EET82602.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|262299802|gb|EEY87714.1| cold shock domain-containing protein CspD [Acinetobacter
radioresistens SH164]
Length = 70
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + V+
Sbjct: 4 REQGVVKWFNDTKGFGFIQR----NGGDDVFVHFRAIMGEGHRSLRDGQRVEFSVVKGQK 59
Query: 62 NGKYSAENLKLVP 74
+ AE ++ +
Sbjct: 60 G--FQAEEVQPLD 70
>gi|238758372|ref|ZP_04619550.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
gi|238703495|gb|EEP96034.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
Length = 66
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 2 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIESGAKG- 57
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 58 -PSAVNVVAL 66
>gi|224282734|ref|ZP_03646056.1| cold-shock DNA-binding domain protein [Bifidobacterium bifidum
NCIMB 41171]
gi|311064055|ref|YP_003970780.1| cold shock protein CspA [Bifidobacterium bifidum PRL2010]
gi|310866374|gb|ADP35743.1| CspA Cold shock protein [Bifidobacterium bifidum PRL2010]
Length = 67
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K+++ KGYGFIT + GDDVF+H S + + G L EG V Y+ +
Sbjct: 1 MAQGTVKFFSAGKGYGFITSD---AGGDDVFVHYSVIQADGFKTLNEGDKVEYEAERGPK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--MQATKVVKL 67
>gi|220923754|ref|YP_002499056.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium nodulans ORS 2060]
gi|219948361|gb|ACL58753.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+YN KG+GFI PE DVF+H +A+ AGL +L++GQ V++D ++
Sbjct: 1 MTIGIVKFYNDQKGFGFIQPED---GSKDVFVHATALERAGLGSLSQGQKVSFDTAEDRR 57
Query: 62 NGKYSAENLK 71
+GK + N++
Sbjct: 58 SGKMAVNNIQ 67
>gi|229552085|ref|ZP_04440810.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1]
gi|229314518|gb|EEN80491.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1]
gi|328462896|gb|EGF34740.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462]
Length = 75
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K +N DKGYGFI E D+F+H SA+ +G +LT G+ V + V+
Sbjct: 1 MMQGRVKNFNVDKGYGFIEAE----GQPDIFVHFSAINESGFKSLTPGEQVDFVIVEGPR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--PQAANVTI 65
>gi|119945641|ref|YP_943321.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864245|gb|ABM03722.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q
Sbjct: 5 EQGTVKWFNEAKGFGFIE----QASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQGPKG 60
Query: 63 GKYSAENL 70
A+++
Sbjct: 61 --PQADSI 66
>gi|16129516|ref|NP_416075.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. MG1655]
gi|89108399|ref|AP_002179.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
gi|170020092|ref|YP_001725046.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli ATCC 8739]
gi|170081225|ref|YP_001730545.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. DH10B]
gi|193066912|ref|ZP_03047881.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194436474|ref|ZP_03068575.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|218554119|ref|YP_002387032.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
gi|218699873|ref|YP_002407502.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
gi|218705059|ref|YP_002412578.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
gi|238900777|ref|YP_002926573.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
gi|293405060|ref|ZP_06649052.1| cold shock-like protein cspB [Escherichia coli FVEC1412]
gi|298380705|ref|ZP_06990304.1| cold shock-like protein cspB [Escherichia coli FVEC1302]
gi|300899666|ref|ZP_07117897.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300903929|ref|ZP_07121824.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300919925|ref|ZP_07136387.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300938348|ref|ZP_07153102.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|301025117|ref|ZP_07188711.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|301306487|ref|ZP_07212553.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|301326428|ref|ZP_07219780.1| transcriptional repressor activity CueR [Escherichia coli MS
78-1]
gi|301647720|ref|ZP_07247513.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|307138212|ref|ZP_07497568.1| cold shock protein; Qin prophage [Escherichia coli H736]
gi|307310877|ref|ZP_07590523.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|312969569|ref|ZP_07783752.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|331642145|ref|ZP_08343280.1| conserved domain protein [Escherichia coli H736]
gi|331652935|ref|ZP_08353940.1| conserved domain protein [Escherichia coli M718]
gi|544108|sp|P36995|CSPB_ECOLI RecName: Full=Cold shock-like protein CspB; Short=CSP-B
gi|479003|gb|AAA23618.1| cold-shock protein [Escherichia coli]
gi|1742552|dbj|BAA15256.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
gi|1787839|gb|AAC74630.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. MG1655]
gi|2226341|gb|AAB61739.1| CspB [Escherichia coli str. K-12 substr. W3110]
gi|169755020|gb|ACA77719.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169889060|gb|ACB02767.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. DH10B]
gi|192959502|gb|EDV89936.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194424506|gb|EDX40492.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|218360887|emb|CAQ98457.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
gi|218369859|emb|CAR17633.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
gi|218432156|emb|CAR13044.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
gi|238863368|gb|ACR65366.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
gi|260449320|gb|ACX39742.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|284921462|emb|CBG34531.1| cold shock-like protein [Escherichia coli 042]
gi|291427268|gb|EFF00295.1| cold shock-like protein cspB [Escherichia coli FVEC1412]
gi|298278147|gb|EFI19661.1| cold shock-like protein cspB [Escherichia coli FVEC1302]
gi|300356791|gb|EFJ72661.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300396226|gb|EFJ79764.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|300404089|gb|EFJ87627.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300413046|gb|EFJ96356.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300456684|gb|EFK20177.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|300838293|gb|EFK66053.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|300846844|gb|EFK74604.1| transcriptional repressor activity CueR [Escherichia coli MS
78-1]
gi|301074155|gb|EFK88961.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|306909055|gb|EFN39551.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|310337854|gb|EFQ02943.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|312946160|gb|ADR26987.1| Qin prophage; cold shock protein [Escherichia coli O83:H1 str.
NRG 857C]
gi|315060857|gb|ADT75184.1| Qin prophage; cold shock protein [Escherichia coli W]
gi|315136198|dbj|BAJ43357.1| cold shock-like protein cspB [Escherichia coli DH1]
gi|315253261|gb|EFU33229.1| transcriptional repressor activity CueR [Escherichia coli MS
85-1]
gi|320197745|gb|EFW72353.1| Cold shock protein CspB [Escherichia coli EC4100B]
gi|320643977|gb|EFX13064.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str.
493-89]
gi|320649406|gb|EFX17948.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. H
2687]
gi|320660405|gb|EFX27873.1| Qin prophage; cold shock protein [Escherichia coli O55:H7 str.
USDA 5905]
gi|323169849|gb|EFZ55505.1| cold shock-like protein cspG [Escherichia coli LT-68]
gi|323185905|gb|EFZ71262.1| cold shock-like protein cspG [Escherichia coli 1357]
gi|323378572|gb|ADX50840.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323942036|gb|EGB38214.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323947934|gb|EGB43929.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323973801|gb|EGB68975.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|331038943|gb|EGI11163.1| conserved domain protein [Escherichia coli H736]
gi|331049033|gb|EGI21105.1| conserved domain protein [Escherichia coli M718]
gi|332343266|gb|AEE56600.1| cold shock-like protein CspG [Escherichia coli UMNK88]
Length = 71
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ + L EGQ VT+
Sbjct: 6 TGLVKWFNADKGFGFISPVD---GSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|291285774|ref|YP_003502592.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str.
CB9615]
gi|331666060|ref|ZP_08366954.1| conserved domain protein [Escherichia coli TA143]
gi|290765647|gb|ADD59608.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str.
CB9615]
gi|331057111|gb|EGI29105.1| conserved domain protein [Escherichia coli TA143]
Length = 71
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ + L EGQ VT+
Sbjct: 6 TGLVKWFNADKGFGFISPVD---GSKDVFVHFSAIQNDNYRTLFEGQKVTFSVESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|16262844|ref|NP_435637.1| CspA6 cold shock protein transcriptional regulator [Sinorhizobium
meliloti 1021]
gi|307322440|ref|ZP_07601795.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|307322706|ref|ZP_07602031.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|14523481|gb|AAK65049.1| CspA6 cold shock protein [Sinorhizobium meliloti 1021]
gi|306891645|gb|EFN22506.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306891926|gb|EFN22757.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
Length = 67
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDN---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSIL 67
>gi|332559893|ref|ZP_08414215.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
gi|332277605|gb|EGJ22920.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
Length = 68
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++W+N KG+GF+ P DVF+H +A+ AG+ L +GQ +TYD + D
Sbjct: 1 MANGTVQWFNATKGFGFVAPA---HGSKDVFVHVTALERAGIHQLNDGQALTYDM-ETDR 56
Query: 62 NGKYSAENLKL 72
NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67
>gi|119946712|ref|YP_944392.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119865316|gb|ABM04793.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q
Sbjct: 5 EQGTVKWFNEAKGFGFIE----QASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKG 60
Query: 63 GKYSAENL 70
A+++
Sbjct: 61 --PQADSI 66
>gi|90415487|ref|ZP_01223421.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
gi|90332810|gb|EAS47980.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI E G DVF+H SA+ + G +L EGQ VT + Q
Sbjct: 7 GTVKWFNDSKGFGFIEQE----GGGDVFVHHSAIQADGFKSLKEGQAVTMEVTQGQKG-- 60
Query: 65 YSAENL 70
AEN+
Sbjct: 61 AQAENV 66
>gi|303285238|ref|XP_003061909.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
gi|226456320|gb|EEH53621.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
Length = 121
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KG+GFITP+ +++F+H+SA+ + G +L E + V Y ++D +
Sbjct: 4 TTGKVKWFNTQKGFGFITPDD---GSEEIFVHQSAIHAEGFRSLREEEPVEYTVEKSD-D 59
Query: 63 GKYSAENLK 71
G+ A +
Sbjct: 60 GRAKAVEVT 68
>gi|169786884|ref|YP_001705697.1| cold shock protein [Acinetobacter baumannii SDF]
gi|260558148|ref|ZP_05830357.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
gi|169150801|emb|CAP02995.1| cold shock protein [Acinetobacter baumannii]
gi|260408376|gb|EEX01685.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
Length = 71
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V + Q
Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLFEGQQVEFSVAQGQKG- 62
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 63 -PNAVNIVAI 71
>gi|262377343|ref|ZP_06070567.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
gi|262307796|gb|EEY88935.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF H S + +G L EGQ V++ Q
Sbjct: 6 NGTVKWFNETKGFGFIQQE----SGPDVFAHFSEITGSGFKTLVEGQKVSFSVAQGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PTAVNIVAL 69
>gi|21230878|ref|NP_636795.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21242217|ref|NP_641799.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
306]
gi|66769123|ref|YP_243885.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|78047078|ref|YP_363253.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|188992271|ref|YP_001904281.1| cold shock protein [Xanthomonas campestris pv. campestris str.
B100]
gi|289662980|ref|ZP_06484561.1| major cold shock protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670169|ref|ZP_06491244.1| major cold shock protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
gi|325914001|ref|ZP_08176357.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
gi|325922910|ref|ZP_08184625.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
19865]
gi|325928751|ref|ZP_08189921.1| cold-shock DNA-binding protein family [Xanthomonas perforans
91-118]
gi|21107638|gb|AAM36335.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
306]
gi|21112487|gb|AAM40719.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66574455|gb|AAY49865.1| major cold shock protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|78035508|emb|CAJ23154.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|167734031|emb|CAP52237.1| cold shock protein [Xanthomonas campestris pv. campestris]
gi|325539770|gb|EGD11410.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
gi|325540919|gb|EGD12491.1| cold-shock DNA-binding protein family [Xanthomonas perforans
91-118]
gi|325546600|gb|EGD17739.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
19865]
Length = 71
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI+ E G+DVF+H A+ G +L EGQ V++ VQ
Sbjct: 6 RENGVVKWFNDAKGFGFISREN----GEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61
Query: 62 NGKYSAENL 70
+ A +
Sbjct: 62 GLQADAVQV 70
>gi|67602636|ref|XP_666494.1| glycogen debranching enzyme [Cryptosporidium hominis TU502]
gi|54657499|gb|EAL36263.1| glycogen debranching enzyme [Cryptosporidium hominis]
Length = 127
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G KW++ KG+GFITP+ +D+F+H+ + G +L + + V Y+ +D
Sbjct: 1 MPLSGVCKWFDSTKGFGFITPDD---GSEDIFVHQQNIKVEGFRSLAQDERVEYEIETDD 57
Query: 61 ANGKYSAENLK 71
G+ A N+
Sbjct: 58 K-GRRKAVNVS 67
>gi|123444001|ref|YP_001007971.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|123444002|ref|YP_001007972.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090962|emb|CAL13844.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090963|emb|CAL13845.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 70
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIESGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|260886462|ref|ZP_05897725.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
gi|330839687|ref|YP_004414267.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC
35185]
gi|260863801|gb|EEX78301.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
gi|329747451|gb|AEC00808.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC
35185]
Length = 66
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+
Sbjct: 3 GKVKWFSAEKGYGFIERED----GDDVFVHFSAIQGDGFKTLAEGQGVEFEIVEGARG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQASNV 62
>gi|166712680|ref|ZP_02243887.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 71
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI+ E G+DVF+H A+ G +L EGQ V++ VQ
Sbjct: 6 RENGLVKWFNDAKGFGFISREN----GEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61
Query: 62 NGKYSAENLKLV 73
A+ ++++
Sbjct: 62 G--LQADAVQVI 71
>gi|53804193|ref|YP_113979.1| cold shock protein [Methylococcus capsulatus str. Bath]
gi|53757954|gb|AAU92245.1| cold shock protein [Methylococcus capsulatus str. Bath]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KGYGFI E SG D+F+H ++ G L EGQ V++ VQ
Sbjct: 5 QQGTVKWFNETKGYGFIQRE----SGADLFVHFRSILGEGFKTLKEGQRVSFVEVQGAKG 60
Query: 63 GKYSAENLKLV 73
A+ + ++
Sbjct: 61 --PQADQVSVI 69
>gi|312959376|ref|ZP_07773893.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
gi|311286093|gb|EFQ64657.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
fluorescens WH6]
Length = 69
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KGYGFI E G DVF+H A+ G +L EGQ V Y V +
Sbjct: 4 RETGNVKWFNDAKGYGFIQRED----GKDVFVHYRAIRGEGHRSLAEGQQVEYAVVSGEK 59
Query: 62 NGKYSAENL 70
AE++
Sbjct: 60 G--LQAEDV 66
>gi|238797907|ref|ZP_04641398.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
gi|238718212|gb|EEQ10037.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
Length = 66
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S L EGQ V + +N A G
Sbjct: 2 TGLVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLEEGQNVEFSI-ENGAKG 57
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 58 PAAANVVAL 66
>gi|229526207|ref|ZP_04415611.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426]
gi|229336365|gb|EEO01383.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ Q+
Sbjct: 6 TGSVKWFNETKGFGFISQDN---GGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQDKKG- 61
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 62 -PQAAQVTAL 70
>gi|90581456|ref|ZP_01237250.1| putative Cold shock-like protein [Vibrio angustum S14]
gi|90437317|gb|EAS62514.1| putative Cold shock-like protein [Vibrio angustum S14]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GF+T + G DVF+H A+AS G LTEGQ V++D Q
Sbjct: 7 GLVKWFNEEKGFGFLTQDN---GGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQKG-- 61
Query: 65 YSAENL 70
A N+
Sbjct: 62 LQAANV 67
>gi|292487397|ref|YP_003530269.1| cold shock-like protein CspG [Erwinia amylovora CFBP1430]
gi|292898644|ref|YP_003538013.1| cold shock protein [Erwinia amylovora ATCC 49946]
gi|291198492|emb|CBJ45600.1| cold shock protein [Erwinia amylovora ATCC 49946]
gi|291552816|emb|CBA19861.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora CFBP1430]
gi|312171502|emb|CBX79760.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora ATCC
BAA-2158]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++PDKG+GFI+P DVF+H SA+ + G L EGQ V +
Sbjct: 7 GLVKWFSPDKGFGFISPTD---GSKDVFVHFSAIQNGGFKTLEEGQKVEFTIENGQKG-- 61
Query: 65 YSAENLKLV 73
+A N+ +
Sbjct: 62 PAAANVTAL 70
>gi|262376813|ref|ZP_06070040.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
gi|262308158|gb|EEY89294.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
Length = 71
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S +AS+G L EGQLV + Q
Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQLVEFSVAQGQKG- 62
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 63 -PNAVNIVAI 71
>gi|192360401|ref|YP_001982239.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
gi|190686566|gb|ACE84244.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
Length = 71
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +GYGFIT E +D+F+H + + G +L EGQ V + + +
Sbjct: 7 GTVKWFNNVRGYGFITR---GEGSEDIFVHYRNIRAEGYRSLAEGQSVEFQLQKGEKG-- 61
Query: 65 YSAENLKLVP 74
AE++ L+
Sbjct: 62 LQAEDVILLS 71
>gi|289641675|ref|ZP_06473835.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
gi|289508544|gb|EFD29483.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
Length = 131
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF++ + G DVF+H++A+ G+ L G V + +
Sbjct: 1 MPTGRVKWFDVDKGFGFLSRDD----GGDVFVHKAALPP-GVDRLKPGDRVEFGIATSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 GD--QALSVRLLAAPPS 70
>gi|126667266|ref|ZP_01738239.1| Cold shock protein [Marinobacter sp. ELB17]
gi|126628211|gb|EAZ98835.1| Cold shock protein [Marinobacter sp. ELB17]
Length = 77
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI +G DD+F H SA+ G L GQ V+++ D
Sbjct: 1 MPSGKVKWFNNAKGYGFIIEDGY---NDDLFAHFSAIQMDGYKTLKAGQAVSFEKKPVDD 57
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 58 G--VHAVNIMPL 67
>gi|66359918|ref|XP_627137.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
parvum Iowa II]
gi|46228824|gb|EAK89694.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
parvum Iowa II]
Length = 135
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G KW++ KG+GFITP+ +D+F+H+ + G +L + + V Y+ +D
Sbjct: 9 MPLSGVCKWFDSTKGFGFITPDD---GSEDIFVHQQNIKVEGFRSLAQDERVEYEIETDD 65
Query: 61 ANGKYSAENLK 71
G+ A N+
Sbjct: 66 K-GRRKAVNVS 75
>gi|302385946|ref|YP_003821768.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
gi|302196574|gb|ADL04145.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
Length = 66
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI E G+D+F+H S +A G +L +GQ V ++
Sbjct: 1 MKKGTVKWFNAQKGFGFICDE----EGNDIFVHFSGLAMEGFKSLEDGQSVIFETTNGAR 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 G--LQAVNVHI 65
>gi|257453238|ref|ZP_05618537.1| cold-shock domain-contain protein [Fusobacterium sp. 3_1_5R]
gi|257467171|ref|ZP_05631482.1| cold-shock domain-contain protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|315918302|ref|ZP_07914542.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563]
gi|317059772|ref|ZP_07924257.1| cold-shock protein [Fusobacterium sp. 3_1_5R]
gi|313685448|gb|EFS22283.1| cold-shock protein [Fusobacterium sp. 3_1_5R]
gi|313692177|gb|EFS29012.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 67
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E + D F+H S +A G +L EGQ VT++ +
Sbjct: 1 MLKGTVKWFNNEKGFGFITGEDTV----DYFVHFSGIAGEGFKSLEEGQAVTFEVSEGKK 56
Query: 62 NGKYSAENLKL 72
A +
Sbjct: 57 G--PMAVEVTK 65
>gi|148555809|ref|YP_001263391.1| cold-shock DNA-binding protein family protein [Sphingomonas
wittichii RW1]
gi|148500999|gb|ABQ69253.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1]
Length = 288
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFI + D F+H SAV AG+ NL EG + ++ + D GK
Sbjct: 223 GTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGMTNLNEGDRLEFEL-EVDRRGK 278
Query: 65 YSAENLKLV 73
Y+A NL +
Sbjct: 279 YAAVNLTPL 287
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K++N KG+GFI + G+DVF+H SAV AGL L EGQ + + V D G
Sbjct: 126 KGVVKFFNGQKGFGFIVRDD---GGEDVFVHISAVEQAGLTGLAEGQPLEFTLV--DRGG 180
Query: 64 KYSAENLKL 72
+ SA +LK+
Sbjct: 181 RVSATDLKI 189
>gi|17547875|ref|NP_521277.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|17430181|emb|CAD16944.1| probable cold shock-like cspc transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 67
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFITP+ G+D+F H S + +G L EG+ V Y
Sbjct: 1 METGTVKWFNESKGFGFITPD---AGGNDLFAHFSEIQGSGFKTLQEGEKVRYVAGVGQK 57
Query: 62 NGKYSAENLKLV 73
+A ++ +
Sbjct: 58 G--PAATKIERI 67
>gi|238794630|ref|ZP_04638236.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
gi|238797908|ref|ZP_04641399.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
gi|238718213|gb|EEQ10038.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
gi|238726019|gb|EEQ17567.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
Length = 66
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 2 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAKG- 57
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 58 -PSAVNVVAL 66
>gi|90021554|ref|YP_527381.1| cold-shock DNA-binding protein family protein [Saccharophagus
degradans 2-40]
gi|89951154|gb|ABD81169.1| cold-shock DNA-binding protein family [Saccharophagus degradans
2-40]
Length = 69
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI+ E G+D+F+H S + +G L EGQ V++
Sbjct: 6 NGTVKWFNESKGYGFISRE----GGNDLFVHFSNITGSGFKTLKEGQSVSFTEGMGQKG- 60
Query: 64 KYSAENLKLV 73
AEN++ +
Sbjct: 61 -PQAENVEPL 69
>gi|291513784|emb|CBK62994.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301]
Length = 66
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFIT E G ++F+H S +A G +L EGQ V ++
Sbjct: 2 TGKVKWFDGKKGYGFITAEN----GKEIFVHFSGIAKDGFKSLNEGQAVEFEVGSGAKG- 56
Query: 64 KYSAENLKLVP 74
A N+ +V
Sbjct: 57 -EQAINVTVVE 66
>gi|302873232|ref|YP_003841865.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|307688601|ref|ZP_07631047.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|302576089|gb|ADL50101.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
743B]
Length = 65
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFIT + G ++F+H S ++ G +L EG V+++ ++ N
Sbjct: 2 QGNVKWFNGLKGYGFITSDD----GSEIFVHYSGISGEGYKSLEEGDKVSFETAEH--NN 55
Query: 64 KYSAENLKLV 73
K A N+K +
Sbjct: 56 KLQAVNVKKI 65
>gi|238782952|ref|ZP_04626980.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|238716155|gb|EEQ08139.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ S L EGQ V + +N A G
Sbjct: 6 TGLVKWFNADKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLEEGQNVEFSI-ENGAKG 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PAAANVVAL 70
>gi|330890523|gb|EGH23184.1| cold shock domain-containing protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW++ +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFSDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59
Query: 62 NGKYSAENLK 71
A+ ++
Sbjct: 60 G--MQADEVQ 67
>gi|323141266|ref|ZP_08076162.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
12067]
gi|322414223|gb|EFY05046.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
12067]
Length = 66
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N +KGYGFI E G D+F+H S + S G L EG V +D +Q D
Sbjct: 2 TGKVKWFNAEKGYGFIQRE----GGKDLFVHFSGIKSEGFKTLEEGWNVEFDVIQGDRG- 56
Query: 64 KYSAENLKLVP 74
A N+ V
Sbjct: 57 -EQATNVVHVE 66
>gi|77360127|ref|YP_339702.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Pseudoalteromonas
haloplanktis TAC125]
gi|332534950|ref|ZP_08410769.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
gi|76875038|emb|CAI86259.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Pseudoalteromonas
haloplanktis TAC125]
gi|332035623|gb|EGI72114.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
Length = 67
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N KG+GFI E G DVF+H SA+ +G L+EGQ VT+ Q
Sbjct: 1 MSVTGKVKFFNEAKGFGFIEQEN----GPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56
Query: 61 ANGKYSAENLK 71
AEN++
Sbjct: 57 KG--PEAENVE 65
>gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
smegmatis str. MC2 155]
gi|118169472|gb|ABK70368.1| 'Cold-shock' DNA-binding domain protein [Mycobacterium smegmatis
str. MC2 155]
Length = 149
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 15 PTGKVKWYDAEKGFGFLSQED----GEDVYVRSSAL-PAGVEALKSGQRVEFGVAAGRRG 69
Query: 63 GKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 70 --PQALSLKLIDPPPS 83
>gi|2970685|gb|AAC06037.1| cold shock protein C [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 69
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G KW+N KG+GFITP DVF+H SA+ G L EGQ V ++
Sbjct: 5 KGQGKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PAAVNVTAI 69
>gi|313157470|gb|EFR56889.1| cold shock-like protein CspE [Alistipes sp. HGB5]
Length = 66
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFIT E G ++F+H S + + G +L EGQ V ++
Sbjct: 2 TGKVKWFDSKKGYGFITGEN----GKEIFVHFSGIVTDGFKSLNEGQAVEFEVGSGAKGD 57
Query: 64 KYSAENLKLVP 74
A N+ ++
Sbjct: 58 --QAVNVTVIE 66
>gi|319790475|ref|YP_004152108.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans
HB-1]
gi|317114977|gb|ADU97467.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans
HB-1]
Length = 68
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KGYGFIT + G DVF+H + + G L EG+ V+++ +++D
Sbjct: 5 TGTVKWFDSKKGYGFITADN----GQDVFVHYTGINGEGFRTLEEGERVSFNVMESDKG- 59
Query: 64 KYSAENL 70
A ++
Sbjct: 60 -LKAVDV 65
>gi|299770790|ref|YP_003732816.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
gi|298700878|gb|ADI91443.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
Length = 69
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G DVF H ++S+G L EGQ V+++ Q
Sbjct: 7 GTVKWFNETKGFGFIQQDA----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60
Query: 65 YSAENLKL 72
SA N+ +
Sbjct: 61 PSAINIVV 68
>gi|227111587|ref|ZP_03825243.1| cold shock protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|253688227|ref|YP_003017417.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754805|gb|ACT12881.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP+ DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPDN---GSKDVFVHFSAIQSNDFKTLDEGQKVEFTIENGQKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVVAL 70
>gi|15601687|ref|NP_233318.1| cold shock domain-contain protein [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|121586695|ref|ZP_01676479.1| cold shock domain family protein [Vibrio cholerae 2740-80]
gi|121726380|ref|ZP_01679654.1| cold shock domain family protein [Vibrio cholerae V52]
gi|147671933|ref|YP_001215147.1| cold shock domain-contain protein [Vibrio cholerae O395]
gi|153212370|ref|ZP_01948152.1| cold shock domain family protein [Vibrio cholerae 1587]
gi|153801420|ref|ZP_01956006.1| cold shock domain family protein [Vibrio cholerae MZO-3]
gi|153818328|ref|ZP_01970995.1| cold shock domain family protein [Vibrio cholerae NCTC 8457]
gi|153821071|ref|ZP_01973738.1| cold shock domain family protein [Vibrio cholerae B33]
gi|153828039|ref|ZP_01980706.1| cold shock domain family protein [Vibrio cholerae 623-39]
gi|227812499|ref|YP_002812509.1| cold shock domain family protein [Vibrio cholerae M66-2]
gi|229505926|ref|ZP_04395435.1| cold shock protein CspA [Vibrio cholerae BX 330286]
gi|229510220|ref|ZP_04399700.1| cold shock protein CspA [Vibrio cholerae B33]
gi|229514346|ref|ZP_04403807.1| cold shock protein CspA [Vibrio cholerae TMA 21]
gi|229517650|ref|ZP_04407095.1| cold shock protein CspA [Vibrio cholerae RC9]
gi|229522460|ref|ZP_04411876.1| cold shock protein CspA [Vibrio cholerae TM 11079-80]
gi|229526515|ref|ZP_04415919.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
gi|229528166|ref|ZP_04417557.1| cold shock protein CspA [Vibrio cholerae 12129(1)]
gi|229605458|ref|YP_002876162.1| cold shock protein CspA [Vibrio cholerae MJ-1236]
gi|254224759|ref|ZP_04918375.1| cold shock domain family protein [Vibrio cholerae V51]
gi|254284560|ref|ZP_04959527.1| cold shock domain family protein [Vibrio cholerae AM-19226]
gi|254850097|ref|ZP_05239447.1| cold-shock protein CspV [Vibrio cholerae MO10]
gi|255746324|ref|ZP_05420271.1| cold shock protein CspA [Vibrio cholera CIRS 101]
gi|262158205|ref|ZP_06029323.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1]
gi|262169196|ref|ZP_06036889.1| cold shock protein CspA [Vibrio cholerae RC27]
gi|297580016|ref|ZP_06941943.1| cold-shock protein CspV [Vibrio cholerae RC385]
gi|298499709|ref|ZP_07009515.1| cold shock domain family protein [Vibrio cholerae MAK 757]
gi|20138009|sp|Q9KL16|CSPV_VIBCH RecName: Full=Cold shock protein CspV
gi|15425982|gb|AAK97640.1|AF409091_1 cold-shock protein CspV [Vibrio cholerae]
gi|9658370|gb|AAF96830.1| cold shock domain family protein [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121549123|gb|EAX59158.1| cold shock domain family protein [Vibrio cholerae 2740-80]
gi|121631128|gb|EAX63503.1| cold shock domain family protein [Vibrio cholerae V52]
gi|124116578|gb|EAY35398.1| cold shock domain family protein [Vibrio cholerae 1587]
gi|124123086|gb|EAY41829.1| cold shock domain family protein [Vibrio cholerae MZO-3]
gi|125622822|gb|EAZ51140.1| cold shock domain family protein [Vibrio cholerae V51]
gi|126511141|gb|EAZ73735.1| cold shock domain family protein [Vibrio cholerae NCTC 8457]
gi|126521445|gb|EAZ78668.1| cold shock domain family protein [Vibrio cholerae B33]
gi|146314316|gb|ABQ18856.1| cold shock domain family protein [Vibrio cholerae O395]
gi|148876448|gb|EDL74583.1| cold shock domain family protein [Vibrio cholerae 623-39]
gi|150425345|gb|EDN17121.1| cold shock domain family protein [Vibrio cholerae AM-19226]
gi|227011641|gb|ACP07852.1| cold shock domain family protein [Vibrio cholerae M66-2]
gi|227015580|gb|ACP11789.1| cold shock domain family protein [Vibrio cholerae O395]
gi|229334528|gb|EEO00014.1| cold shock protein CspA [Vibrio cholerae 12129(1)]
gi|229336673|gb|EEO01691.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
gi|229340445|gb|EEO05451.1| cold shock protein CspA [Vibrio cholerae TM 11079-80]
gi|229345686|gb|EEO10659.1| cold shock protein CspA [Vibrio cholerae RC9]
gi|229348326|gb|EEO13284.1| cold shock protein CspA [Vibrio cholerae TMA 21]
gi|229352665|gb|EEO17605.1| cold shock protein CspA [Vibrio cholerae B33]
gi|229356277|gb|EEO21195.1| cold shock protein CspA [Vibrio cholerae BX 330286]
gi|229371944|gb|ACQ62366.1| cold shock protein CspA [Vibrio cholerae MJ-1236]
gi|254845802|gb|EET24216.1| cold-shock protein CspV [Vibrio cholerae MO10]
gi|255736078|gb|EET91476.1| cold shock protein CspA [Vibrio cholera CIRS 101]
gi|262022477|gb|EEY41185.1| cold shock protein CspA [Vibrio cholerae RC27]
gi|262030083|gb|EEY48729.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1]
gi|297535662|gb|EFH74496.1| cold-shock protein CspV [Vibrio cholerae RC385]
gi|297541690|gb|EFH77741.1| cold shock domain family protein [Vibrio cholerae MAK 757]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ Q
Sbjct: 6 TGSVKWFNETKGFGFLTQDN---GGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKKG- 61
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 62 -PQASNVVAL 70
>gi|257462895|ref|ZP_05627301.1| cold shock protein [Fusobacterium sp. D12]
gi|317060519|ref|ZP_07925004.1| cold shock protein [Fusobacterium sp. D12]
gi|313686195|gb|EFS23030.1| cold shock protein [Fusobacterium sp. D12]
Length = 66
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ VT+D +
Sbjct: 2 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVTFDITEGQKG- 56
Query: 64 KYSAENLKLVP 74
A N+ +V
Sbjct: 57 -PQASNIIIVK 66
>gi|307313947|ref|ZP_07593562.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|306899221|gb|EFN29859.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 67
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ ++
Sbjct: 56 TGKSKAENVSIL 67
>gi|149185568|ref|ZP_01863884.1| Cold shock protein [Erythrobacter sp. SD-21]
gi|148830788|gb|EDL49223.1| Cold shock protein [Erythrobacter sp. SD-21]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKGYGFI P+ D F+H SAV +AG+ L + Q + Y+ Q
Sbjct: 1 MAKTGTVKFFNSDKGYGFIQPDD---GSADSFVHISAVQAAGMQTLDKEQRLNYEVEQG- 56
Query: 61 ANGKYSAENLK 71
NGK SA N+
Sbjct: 57 RNGKESAVNIS 67
>gi|91203628|emb|CAJ71281.1| similar to Cold shock protein (CspB) [Candidatus Kuenenia
stuttgartiensis]
Length = 79
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW++ KG+GFI + G DVF+H S + G L +G+ V ++ V+
Sbjct: 11 IMAIGKVKWFDAKKGFGFIEQD----GGGDVFVHYSNIGGDGFKTLEDGEKVEFEVVEGA 66
Query: 61 ANGKYSAEN 69
+ N
Sbjct: 67 KGLQAQKVN 75
>gi|85374781|ref|YP_458843.1| cold shock protein [Erythrobacter litoralis HTCC2594]
gi|84787864|gb|ABC64046.1| Cold shock protein [Erythrobacter litoralis HTCC2594]
Length = 70
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKGYGFI P+ D F+H SAV +AG+ L + Q + YD Q
Sbjct: 1 MAKTGTVKFFNEDKGYGFIQPDD---GSADSFVHISAVQAAGMQTLDKEQRLNYDVEQG- 56
Query: 61 ANGKYSAENLK 71
NGK SA NL
Sbjct: 57 RNGKESAVNLS 67
>gi|256826183|ref|YP_003150143.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
20547]
gi|256689576|gb|ACV07378.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
20547]
Length = 133
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF+ ++G DVFL SA+ AG+ L G + Y VQ
Sbjct: 1 MPTGKVKWFDADKGFGFV----GDDAGSDVFLRASAL-PAGVTTLRPGTRLEYSIVQGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ +
Sbjct: 56 GD--QAMHVEVLDAPPS 70
>gi|219119929|ref|XP_002180715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408188|gb|EEC48123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 71
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFI P+ +DVF+H+++V S G +L EG+ V + ++D G
Sbjct: 8 NGTVKWFDVKKGFGFIVPDD---GSEDVFVHQTSVHSEGFRSLAEGEPVEFSIKEDDR-G 63
Query: 64 KYSAENLK 71
+ SAE +
Sbjct: 64 RKSAERVT 71
>gi|108801438|ref|YP_641635.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
MCS]
gi|108771857|gb|ABG10579.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
Length = 147
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 13 PTGRVKWYDAEKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRRG 67
Query: 63 GKYSAENLKLVPKSSN 78
A +L L+ +
Sbjct: 68 --PQALSLTLIDPPPS 81
>gi|37525773|ref|NP_929117.1| hypothetical protein plu1842 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785202|emb|CAE14135.1| unnamed protein product [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 70
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ V +
Sbjct: 6 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAANVMAI 70
>gi|238782953|ref|ZP_04626981.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|332163162|ref|YP_004299739.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|6073870|gb|AAB40923.2| major cold shock protein CSPA1 [Yersinia enterocolitica]
gi|238716156|gb|EEQ08140.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
gi|318603954|emb|CBY25452.1| cold shock protein CspG [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667392|gb|ADZ44036.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862837|emb|CBX72978.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
Length = 70
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|94500755|ref|ZP_01307284.1| cold-shock DNA-binding domain family protein [Oceanobacter sp.
RED65]
gi|94427077|gb|EAT12058.1| cold-shock DNA-binding domain family protein [Oceanobacter sp.
RED65]
Length = 68
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E G DVF H S + G L EGQ V + Q
Sbjct: 5 TGTVKWFNEAKGFGFIAQEN----GPDVFAHFSEIQGEGFKTLAEGQAVEFIVTQGQKG- 59
Query: 64 KYSAENLKLV 73
AE + +
Sbjct: 60 -PQAEKIVAI 68
>gi|50121397|ref|YP_050564.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|227328628|ref|ZP_03832652.1| cold shock protein [Pectobacterium carotovorum subsp. carotovorum
WPP14]
gi|261821404|ref|YP_003259510.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
gi|49611923|emb|CAG75372.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
gi|261605417|gb|ACX87903.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
Length = 70
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP+ DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPDN---GSKDVFVHFSAIQSNDFKTLDEGQKVEFTIENGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAGNVVAL 70
>gi|88857623|ref|ZP_01132266.1| Cold shock protein [Pseudoalteromonas tunicata D2]
gi|88820820|gb|EAR30632.1| Cold shock protein [Pseudoalteromonas tunicata D2]
Length = 69
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H A+ G L EGQ V + Q
Sbjct: 5 TTGTVKWFNESKGFGFIEQEN----GPDVFAHFRAITGTGFKTLVEGQKVQFKVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AE + ++
Sbjct: 61 --PQAEEIVVL 69
>gi|15600936|ref|NP_232566.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1
biovar eltor str. N16961]
gi|121587988|ref|ZP_01677741.1| cold shock transcriptional regulator CspA [Vibrio cholerae
2740-80]
gi|121728193|ref|ZP_01681227.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52]
gi|147671768|ref|YP_001215947.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
gi|153214405|ref|ZP_01949376.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587]
gi|153802385|ref|ZP_01956971.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3]
gi|153816822|ref|ZP_01969489.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC
8457]
gi|153825020|ref|ZP_01977687.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
gi|153830344|ref|ZP_01983011.1| cold shock transcriptional regulator CspA [Vibrio cholerae
623-39]
gi|227811792|ref|YP_002811802.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2]
gi|229506667|ref|ZP_04396176.1| cold shock protein CspG [Vibrio cholerae BX 330286]
gi|229510535|ref|ZP_04400015.1| cold shock protein CspG [Vibrio cholerae B33]
gi|229514666|ref|ZP_04404127.1| cold shock protein CspG [Vibrio cholerae TMA 21]
gi|229517333|ref|ZP_04406778.1| cold shock protein CspG [Vibrio cholerae RC9]
gi|229522836|ref|ZP_04412250.1| cold shock protein CspG [Vibrio cholerae TM 11079-80]
gi|229527853|ref|ZP_04417244.1| cold shock protein CspG [Vibrio cholerae 12129(1)]
gi|229605144|ref|YP_002875848.1| cold shock protein CspG [Vibrio cholerae MJ-1236]
gi|254286659|ref|ZP_04961614.1| cold shock transcriptional regulator CspA [Vibrio cholerae
AM-19226]
gi|254850434|ref|ZP_05239784.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10]
gi|255746020|ref|ZP_05419967.1| cold shock protein CspG [Vibrio cholera CIRS 101]
gi|261212663|ref|ZP_05926947.1| cold shock protein CspG [Vibrio sp. RC341]
gi|262162141|ref|ZP_06031156.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1]
gi|262164784|ref|ZP_06032522.1| cold shock protein CspG [Vibrio mimicus VM223]
gi|262167803|ref|ZP_06035504.1| cold shock protein CspG [Vibrio cholerae RC27]
gi|262173002|ref|ZP_06040679.1| cold shock protein CspG [Vibrio mimicus MB-451]
gi|262189592|ref|ZP_06047992.1| cold shock protein CspG [Vibrio cholerae CT 5369-93]
gi|262403347|ref|ZP_06079907.1| cold shock protein CspG [Vibrio sp. RC586]
gi|297579705|ref|ZP_06941632.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385]
gi|298500023|ref|ZP_07009829.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK
757]
gi|20138011|sp|Q9KN00|CSPA_VIBCH RecName: Full=Cold shock-like protein CspA
gi|9657556|gb|AAF96079.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547786|gb|EAX57875.1| cold shock transcriptional regulator CspA [Vibrio cholerae
2740-80]
gi|121629516|gb|EAX61940.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52]
gi|124115354|gb|EAY34174.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587]
gi|124122104|gb|EAY40847.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3]
gi|126512625|gb|EAZ75219.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC
8457]
gi|146314151|gb|ABQ18691.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
gi|148874187|gb|EDL72322.1| cold shock transcriptional regulator CspA [Vibrio cholerae
623-39]
gi|149741345|gb|EDM55379.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
gi|150423243|gb|EDN15189.1| cold shock transcriptional regulator CspA [Vibrio cholerae
AM-19226]
gi|227010934|gb|ACP07145.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2]
gi|227014793|gb|ACP11002.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
gi|229334215|gb|EEN99700.1| cold shock protein CspG [Vibrio cholerae 12129(1)]
gi|229340053|gb|EEO05061.1| cold shock protein CspG [Vibrio cholerae TM 11079-80]
gi|229345369|gb|EEO10342.1| cold shock protein CspG [Vibrio cholerae RC9]
gi|229348646|gb|EEO13604.1| cold shock protein CspG [Vibrio cholerae TMA 21]
gi|229352980|gb|EEO17920.1| cold shock protein CspG [Vibrio cholerae B33]
gi|229357018|gb|EEO21936.1| cold shock protein CspG [Vibrio cholerae BX 330286]
gi|229371630|gb|ACQ62052.1| cold shock protein CspG [Vibrio cholerae MJ-1236]
gi|254846139|gb|EET24553.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10]
gi|255735774|gb|EET91172.1| cold shock protein CspG [Vibrio cholera CIRS 101]
gi|260837728|gb|EEX64405.1| cold shock protein CspG [Vibrio sp. RC341]
gi|261890360|gb|EEY36347.1| cold shock protein CspG [Vibrio mimicus MB-451]
gi|262023711|gb|EEY42411.1| cold shock protein CspG [Vibrio cholerae RC27]
gi|262027164|gb|EEY45831.1| cold shock protein CspG [Vibrio mimicus VM223]
gi|262028216|gb|EEY46874.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1]
gi|262034524|gb|EEY52864.1| cold shock protein CspG [Vibrio cholerae CT 5369-93]
gi|262350846|gb|EEY99979.1| cold shock protein CspG [Vibrio sp. RC586]
gi|297535351|gb|EFH74185.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385]
gi|297542004|gb|EFH78055.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK
757]
gi|327485389|gb|AEA79795.1| Cold shock protein CspG [Vibrio cholerae LMA3894-4]
Length = 70
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ Q
Sbjct: 6 TGSVKWFNETKGFGFISQDN---GGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKG- 61
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 62 -PQAAQVTAL 70
>gi|258624846|ref|ZP_05719774.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
gi|258582844|gb|EEW07665.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
Length = 66
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ Q
Sbjct: 2 TGSVKWFNETKGFGFISQDN---GGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKG- 57
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 58 -PQAAQVTAL 66
>gi|268678896|ref|YP_003303327.1| Cold-shock protein DNA-binding protein [Sulfurospirillum
deleyianum DSM 6946]
gi|268616927|gb|ACZ11292.1| Cold-shock protein DNA-binding protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 71
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI P G DVF+H V G +L EGQ VTY+ +
Sbjct: 6 GTVKWFNNEKGFGFIQPND---GGKDVFVHFRQVNRTGYGRVSLAEGQKVTYELGEGPKG 62
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 63 --PQAENVTGL 71
>gi|163802257|ref|ZP_02196152.1| transcription elongation factor GreB [Vibrio sp. AND4]
gi|159174062|gb|EDP58872.1| transcription elongation factor GreB [Vibrio sp. AND4]
Length = 69
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI+ E SGDD+F+H ++ G L EG+ V++
Sbjct: 5 ATGTVKWFNEAKGFGFISQE----SGDDLFVHFRSILGDGFKKLVEGEKVSFTVGHGPKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --LQAENVTAL 69
>gi|254455833|ref|ZP_05069262.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082835|gb|EDZ60261.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
Pelagibacter sp. HTCC7211]
Length = 70
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G IKWYN KGYGFI + D F+H SAV +AG+ L EG + +
Sbjct: 5 TGKIKWYNGKKGYGFIERDDKE---KDAFVHASAVKAAGMRYLNEGDKLEFTLEDGPKG- 60
Query: 64 KYSAENLKLVP 74
SA NLK V
Sbjct: 61 -PSAVNLKKVD 70
>gi|269103590|ref|ZP_06156287.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163488|gb|EEZ41984.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
102761]
Length = 68
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI S G DVF+H SA+ S G L EGQ V + V + G
Sbjct: 5 TGTVKWFNDEKGFGFI----SGVDGKDVFVHYSAIQSQGRRTLREGQSVEF-IVTDGQKG 59
Query: 64 KYSAENLKL 72
++E + L
Sbjct: 60 PQASEVVAL 68
>gi|293603888|ref|ZP_06686303.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553]
gi|311104610|ref|YP_003977463.1| cold-shock DNA-binding domain-containing protein 1 [Achromobacter
xylosoxidans A8]
gi|292817725|gb|EFF76791.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553]
gi|310759299|gb|ADP14748.1| cold-shock DNA-binding domain protein 1 [Achromobacter
xylosoxidans A8]
Length = 67
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE G D+F H S + S G L E Q V+Y Q
Sbjct: 1 METGIVKWFNDAKGFGFIMPEN---GGKDLFAHFSEIVSDGHKVLVENQRVSYVTAQGAK 57
Query: 62 NGKYSAENLKLV 73
A ++ +
Sbjct: 58 G--PHATQIRAL 67
>gi|153821098|ref|ZP_01973765.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33]
gi|153824664|ref|ZP_01977331.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
gi|262190586|ref|ZP_06048826.1| cold shock protein CspA [Vibrio cholerae CT 5369-93]
gi|126521472|gb|EAZ78695.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33]
gi|149741620|gb|EDM55649.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
gi|262033546|gb|EEY52044.1| cold shock protein CspA [Vibrio cholerae CT 5369-93]
gi|327485910|gb|AEA80316.1| Cold shock protein CspA [Vibrio cholerae LMA3894-4]
Length = 66
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ Q
Sbjct: 2 TGSVKWFNETKGFGFLTQDN---GGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKKG- 57
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 58 -PQASNVVAL 66
>gi|58581133|ref|YP_200149.1| major cold shock protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84623058|ref|YP_450430.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58425727|gb|AAW74764.1| major cold shock protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84366998|dbj|BAE68156.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 71
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI+ E G+DVF+H A+ G +L EGQ V++ VQ
Sbjct: 6 RENGLVKWFNDAKGFGFISREN----GEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 62 G--LQADAVQVV 71
>gi|325499887|gb|EGC97746.1| cold shock-like protein cspB [Escherichia fergusonii ECD227]
Length = 67
Score = 80.1 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ + L EGQ VT+
Sbjct: 2 TGLVKWFNADKGFGFISPVD---GSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAKG- 57
Query: 64 KYSAENL 70
+A N+
Sbjct: 58 -PAAANV 63
>gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium
aromaticivorans DSM 12444]
Length = 267
Score = 80.1 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFIT + D F+H SAV +GL L EG + +D + D GK
Sbjct: 201 GTVKFFNAMKGFGFITRDD---GQPDAFVHISAVERSGLRELNEGDKLEFDL-EVDRRGK 256
Query: 65 YSAENL 70
YSA NL
Sbjct: 257 YSAVNL 262
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K++N KG+GFI E G+DVF+H SAV AGL L EGQ + ++ V D G
Sbjct: 113 KGVVKFFNGQKGFGFIQRED---GGEDVFVHISAVERAGLEGLAEGQQLEFNLV--DRGG 167
Query: 64 KYSAENLKLV 73
K SA +L++V
Sbjct: 168 KISAADLQVV 177
>gi|303229892|ref|ZP_07316668.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a]
gi|303232195|ref|ZP_07318898.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6]
gi|302513301|gb|EFL55340.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6]
gi|302515448|gb|EFL57414.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a]
Length = 65
Score = 80.1 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYGFI E G DVF+H SA+ G +L+EGQ VT+D V +
Sbjct: 3 GKVKWFSAEKGYGFIERED----GSDVFVHFSAIQDEGFKSLSEGQNVTFDIVDGNRG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQAANV 62
>gi|296132465|ref|YP_003639712.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
gi|296031043|gb|ADG81811.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
Length = 65
Score = 80.1 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KG+GFI +G DVF+H SA+ + G L EG+ V +D VQ + G
Sbjct: 3 GTVKWFNAEKGFGFIEA----SNGSDVFVHFSAIQNEGFKTLEEGEKVFFDIVQGNR-GP 57
Query: 65 YSAENLKL 72
+A ++
Sbjct: 58 QAANVVRK 65
>gi|269125076|ref|YP_003298446.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310034|gb|ACY96408.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
DSM 43183]
Length = 135
Score = 80.1 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ KG+GF+T + G +VF+H SA+ +G+ +L GQ V + V+
Sbjct: 6 PTGKVKWYDAGKGFGFLTRDD----GGEVFVHSSAL-PSGVTSLKTGQRVEFGVVEGRRG 60
Query: 63 GKYSAENLKLVPKSSN 78
A +++ + +
Sbjct: 61 --QQALSVRTLDPLPS 74
>gi|320012738|gb|ADW07588.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 67
Score = 80.1 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI +G G +VF H S +A+ GL L EGQ VT+D Q
Sbjct: 1 MSSGTVKWFNAAKGFGFIEQDG---DGAEVFAHFSNIAAQGLPELFEGQKVTFDVTQGPK 57
Query: 62 NGKYSAENL 70
AEN+
Sbjct: 58 G--PMAENI 64
>gi|262374770|ref|ZP_06068038.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262310301|gb|EEY91397.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 71
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S ++S+G L EGQ+V + Q
Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEISSSGFKTLMEGQMVEFSVAQGQKG- 62
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 63 -PNAVNIVAI 71
>gi|117924550|ref|YP_865167.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
MC-1]
gi|117608306|gb|ABK43761.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
Length = 71
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N DKG+GFI P+ DVF H S + + +G +L EGQ V + D
Sbjct: 6 TGTVKWFNNDKGFGFIAPDN---GSKDVFAHFSEISSGSGFKSLEEGQKVEFSVEPGDKG 62
Query: 63 GKYSAENLK 71
K A +
Sbjct: 63 PK--AVKIT 69
>gi|297735007|emb|CBI17369.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G
Sbjct: 7 TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAVDVT 70
>gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB [Mycobacterium abscessus ATCC
19977]
gi|169239938|emb|CAM60966.1| Probable cold shock-like protein B CspB [Mycobacterium abscessus]
Length = 137
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V +
Sbjct: 1 MPTGKVKWYDAEKGFGFLSQED----GEDVYVRSSAL-PAGVEGLKAGQKVEFGMAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +LKL+ +
Sbjct: 56 G--PQALSLKLIDAPPS 70
>gi|262279162|ref|ZP_06056947.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
gi|262259513|gb|EEY78246.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
Length = 69
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E SG DVF H +AS+G L EGQ VT++ Q
Sbjct: 5 ANGTVKWFNETKGFGFIQQE----SGPDVFAHFKEIASSGFKTLYEGQKVTFNIAQGQKG 60
Query: 63 GKYSAENL 70
SA N+
Sbjct: 61 --PSAVNI 66
>gi|33152437|ref|NP_873790.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP]
gi|33148660|gb|AAP96179.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP]
Length = 68
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H G +KW+N KG+GFIT + D+F H S + G +L GQ V ++ V N+
Sbjct: 1 MHIGIVKWFNNVKGFGFITCDTVEG---DIFAHFSEIKQDGYRSLKVGQKVQFELVTNER 57
Query: 62 NGKYSAENLKLVP 74
SA ++ +
Sbjct: 58 G--ASATHISTIE 68
>gi|224282740|ref|ZP_03646062.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
gi|310287199|ref|YP_003938457.1| Cold shock protein [Bifidobacterium bifidum S17]
gi|311064061|ref|YP_003970786.1| cold shock protein CspB [Bifidobacterium bifidum PRL2010]
gi|313139899|ref|ZP_07802092.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
gi|309251135|gb|ADO52883.1| Cold shock protein [Bifidobacterium bifidum S17]
gi|310866380|gb|ADP35749.1| CspB Cold shock protein [Bifidobacterium bifidum PRL2010]
gi|313132409|gb|EFR50026.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
Length = 129
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ KG+GFIT + G+DVFL +A+ G+ L +G V + +
Sbjct: 1 MPSGRVRWFDAKKGFGFITND----EGEDVFLPAAAL-PDGVTTLRKGARVEFSVIDGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + LV +
Sbjct: 56 G--PQAMGVTLVASVPS 70
>gi|169796701|ref|YP_001714494.1| cold shock-like protein [Acinetobacter baumannii AYE]
gi|215484188|ref|YP_002326415.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
gi|169149628|emb|CAM87518.1| cold shock-like protein [Acinetobacter baumannii AYE]
gi|213987146|gb|ACJ57445.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
Length = 69
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + SG DVF H +A++G L EGQ VT++ Q
Sbjct: 7 GTVKWFNETKGFGFIQQD----SGPDVFAHFKEIATSGFKTLYEGQRVTFNITQGQKG-- 60
Query: 65 YSAENL 70
+A N+
Sbjct: 61 PNAVNI 66
>gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a]
gi|111153608|emb|CAJ65366.1| CspB [Frankia alni ACN14a]
Length = 131
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF++ + G DVF+H++A+ AG+ L G V +
Sbjct: 1 MPTGKVKWFDVDKGFGFLSRDD----GGDVFVHKAAL-PAGVERLKPGDRVEFGVAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 GD--QALSVRLLAAPPS 70
>gi|26249026|ref|NP_755066.1| cold shock-like protein cspB [Escherichia coli CFT073]
gi|218551643|ref|YP_002385435.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
35469]
gi|218561570|ref|YP_002394483.1| cold shock protein; Qin prophage [Escherichia coli S88]
gi|300925265|ref|ZP_07141160.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|331680503|ref|ZP_08381162.1| conserved domain protein [Escherichia coli H591]
gi|26109433|gb|AAN81636.1|AE016765_38 Cold shock-like protein cspB [Escherichia coli CFT073]
gi|218359185|emb|CAQ91849.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
35469]
gi|218368339|emb|CAR06158.1| cold shock protein; Qin prophage [Escherichia coli S88]
gi|300418598|gb|EFK01909.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|323190390|gb|EFZ75666.1| cold shock-like protein cspG [Escherichia coli RN587/1]
gi|324112033|gb|EGC06011.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|331071966|gb|EGI43302.1| conserved domain protein [Escherichia coli H591]
Length = 71
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P DVF+H SA+ + L EGQ VT+
Sbjct: 6 TGLVKWFNADKGFGFISPVD---GSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAANV 67
>gi|330445023|ref|ZP_08308677.1| transcription antiterminator and regulator of RNA stability
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328493141|dbj|GAA03174.1| transcription antiterminator and regulator of RNA stability
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 68
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFI+ G DVF+H SA+ + G L EGQ V + V + G
Sbjct: 5 TGTVKWFNDDKGFGFISGAD----GKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKG 59
Query: 64 KYSAENLKL 72
++E + L
Sbjct: 60 PQASEVVAL 68
>gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein family [Pseudonocardia sp. P1]
Length = 128
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ + G+DV++ ++A+ +G L GQ V + +
Sbjct: 1 MPTGRVKWYDAEKGFGFLSQD----GGEDVYVRKAAL-PSGTEALKSGQRVEFGMAEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++++V K ++
Sbjct: 56 G--PQALSVRVVEKQAS 70
>gi|193788570|ref|NP_001123330.1| zinc finger protein ZF(CCHC)-17 [Ciona intestinalis]
gi|93003148|tpd|FAA00157.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 193
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+ KW+N +GYGFITP+ S++ DVF+H+S++ G +L EG V + Y +
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWYKPSKKGL- 87
Query: 65 YSAENLKLVPKSSN 78
E +K+V
Sbjct: 88 ---EAVKVVGPGGE 98
>gi|78188197|ref|YP_378535.1| cold-shock DNA-binding domain-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78170396|gb|ABB27492.1| cold-shock DNA-binding protein family [Chlorobium chlorochromatii
CaD3]
Length = 69
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI + G DVF+H SA+ +G L EGQ VT + VQ +
Sbjct: 6 GTVKWFNEEKGYGFIE----QQGGKDVFVHYSAINGSGRKTLVEGQKVTMEVVQGEKG-- 59
Query: 65 YSAENLKLV 73
A ++ +
Sbjct: 60 LQASDVTPL 68
>gi|119358122|ref|YP_912766.1| cold-shock DNA-binding protein family protein [Chlorobium
phaeobacteroides DSM 266]
gi|119355471|gb|ABL66342.1| cold-shock DNA-binding protein family [Chlorobium
phaeobacteroides DSM 266]
Length = 70
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI + G DVF+H SA+ +G +LTEGQ V + VQ
Sbjct: 7 GTVKWFNEEKGYGFIA----QKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTPL 69
>gi|197284798|ref|YP_002150670.1| cold shock protein [Proteus mirabilis HI4320]
gi|227357798|ref|ZP_03842147.1| cold shock protein [Proteus mirabilis ATCC 29906]
gi|194682285|emb|CAR42037.1| cold shock protein [Proteus mirabilis HI4320]
gi|227162127|gb|EEI47141.1| cold shock protein [Proteus mirabilis ATCC 29906]
Length = 70
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP+ DVF+H SA+ S +L EGQ V++
Sbjct: 6 TGTVKWFNDDKGFGFITPKD---GSKDVFVHYSAIQSDDFKSLMEGQEVSFTMENGMKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVVAL 70
>gi|28901144|ref|NP_800799.1| cold shock transcriptional regulator CspA [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838855|ref|ZP_01991522.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
AQ3810]
gi|260362706|ref|ZP_05775575.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
K5030]
gi|260879992|ref|ZP_05892347.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AN-5034]
gi|260894667|ref|ZP_05903163.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
Peru-466]
gi|260900524|ref|ZP_05908919.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AQ4037]
gi|28809657|dbj|BAC62632.1| cold shock transcriptional regulator CspA [Vibrio
parahaemolyticus RIMD 2210633]
gi|149747683|gb|EDM58593.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
AQ3810]
gi|308086443|gb|EFO36138.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
Peru-466]
gi|308091849|gb|EFO41544.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AN-5034]
gi|308107098|gb|EFO44638.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AQ4037]
gi|308112226|gb|EFO49766.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
K5030]
gi|328471023|gb|EGF41934.1| cold shock transcriptional regulator CspA [Vibrio
parahaemolyticus 10329]
Length = 70
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF++ + G DVF+H +A+ + G LTEGQ V+++ Q
Sbjct: 6 TGSVKWFNETKGFGFLSQDN---GGQDVFVHFNAIVADGFKTLTEGQKVSFNVEQGKKG- 61
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 62 -PQATEVTPL 70
>gi|292490283|ref|YP_003525722.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
Nc4]
gi|291578878|gb|ADE13335.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
Nc4]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFI E G D+F+H ++ G +L EGQ V++ V
Sbjct: 5 ETGTVKWFNDAKGYGFIQRES---GGSDLFVHFRSITGHGHKSLEEGQQVSFIEVPGQKG 61
Query: 63 GKYSAENLKLV 73
A+ + ++
Sbjct: 62 --PQADQVTVL 70
>gi|4454361|emb|CAA72659.1| cold shock protein, CSPA [Vibrio cholerae]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ Q
Sbjct: 6 TGSVKWFNETKGFGFLTQDN---GGNDVFVHLNSIQSEGFKTLAEGQRVSFIVEQGKKG- 61
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 62 -PQASNVVAL 70
>gi|307107761|gb|EFN56003.1| hypothetical protein CHLNCDRAFT_145396 [Chlorella variabilis]
Length = 301
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGFIT E S D+VF+H+S + + G +L EG+ V +D V D K
Sbjct: 15 GTVKWFNSTKGYGFITCEESE---DEVFVHQSNIETTGYRSLKEGEEVEFDLVVADDGKK 71
Query: 65 YS 66
+
Sbjct: 72 KA 73
>gi|51597878|ref|YP_072069.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
32953]
gi|186897074|ref|YP_001874186.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51591160|emb|CAH22825.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
32953]
gi|186700100|gb|ACC90729.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP G DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GGKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAVNV 67
>gi|326796223|ref|YP_004314043.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
gi|326546987|gb|ADZ92207.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
MMB-1]
Length = 69
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V ++
Sbjct: 6 TGTVKFFNETKGFGFITQE----QGPDVFVHFSAINVSGFKTLAEGQKVQFEVADGKKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -PEAQNVTPL 69
>gi|300022389|ref|YP_003755000.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524210|gb|ADJ22679.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 71
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K+YN KGYGFI P+ G+DVF+H +AV +G+ L EG ++++ +
Sbjct: 1 MRQTGTVKFYNSQKGYGFIKPDT---GGNDVFVHVTAVERSGIGELNEGMRISFETEPDK 57
Query: 61 ANGKYSAENLKL 72
A +L+
Sbjct: 58 RGKGPKAVDLQK 69
>gi|195953301|ref|YP_002121591.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195932913|gb|ACG57613.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 71
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
M G++KW++ +KGYGF+T + + DVF+H SA+ G L +GQ V ++ Q
Sbjct: 1 MGITGTVKWFSKEKGYGFLTRDD---NQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQ 57
Query: 59 NDANGKYSAENLKLVP 74
+ + A+N++++
Sbjct: 58 DSKGPR--AKNVRVLS 71
>gi|330447207|ref|ZP_08310857.1| cold shock protein CspG [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491398|dbj|GAA05354.1| cold shock protein CspG [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +KG+GF+T G DVF+H A+AS G LTEGQ V++D Q
Sbjct: 7 GLVKWFNEEKGFGFLTQNN---GGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQKG-- 61
Query: 65 YSAENL 70
A N+
Sbjct: 62 LQAANV 67
>gi|254196032|ref|ZP_04902457.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
gi|169652776|gb|EDS85469.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
Length = 57
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMEGFKTLKENQRVSFEVKTGPK 57
>gi|157370303|ref|YP_001478292.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|157322067|gb|ABV41164.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQRVEFTIENGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ ++
Sbjct: 62 -PSAGNVVVL 70
>gi|224105199|ref|XP_002313723.1| predicted protein [Populus trichocarpa]
gi|222850131|gb|EEE87678.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GFITP+ GDD+F+H+S++ S G +L +G+ V ++ +D +G+
Sbjct: 1 GKVKWFSDQKGFGFITPDD---GGDDLFVHQSSIKSEGYRSLGDGEEVEFEIENSD-DGR 56
Query: 65 YSAENLK 71
A N+
Sbjct: 57 TKAANVT 63
>gi|117926359|ref|YP_866976.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
MC-1]
gi|117610115|gb|ABK45570.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI +G D F+H SA+ + G +L EGQ V + V
Sbjct: 4 RETGTVKWFNDTKGFGFIERDG---GKGDAFVHHSAINATGFKSLAEGQKVEFTVVAGQK 60
Query: 62 NGKYSAENLKLV 73
+ EN+ +
Sbjct: 61 G--AACENVVAI 70
>gi|89075964|ref|ZP_01162336.1| cold shock protein [Photobacterium sp. SKA34]
gi|90581356|ref|ZP_01237152.1| cold shock protein [Vibrio angustum S14]
gi|89048313|gb|EAR53892.1| cold shock protein [Photobacterium sp. SKA34]
gi|90437466|gb|EAS62661.1| cold shock protein [Vibrio angustum S14]
Length = 68
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFI S G DVF+H SA+ + G L EGQ V +
Sbjct: 5 TGTVKWFNDDKGFGFI----SGTDGKDVFVHFSAIQAQGRRTLREGQSVEFIVTDGQKG- 59
Query: 64 KYSAENL 70
A +
Sbjct: 60 -PQASEV 65
>gi|262198097|ref|YP_003269306.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM
14365]
gi|262081444|gb|ACY17413.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM
14365]
Length = 94
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI E G DVF+H S + + G LTEG++V Y+ +
Sbjct: 1 MPTGAVKWFNNVKGYGFILRED----GQDVFVHWSNILADGYRLLTEGEIVEYELQEGPK 56
Query: 62 NGKYSAENLK 71
A +K
Sbjct: 57 G--LFAAQVK 64
>gi|218780562|ref|YP_002431880.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
gi|218761946|gb|ACL04412.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 69
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N KG+GFI E G DVF+H SA+ G +L EGQ V + VQ
Sbjct: 4 REMGTVKWFNDKKGFGFIERE----EGGDVFVHYSAIVGNGFRSLAEGQKVEFTVVQGAK 59
Query: 62 NGKYSAENLK 71
+AE +
Sbjct: 60 G--PAAEEVS 67
>gi|26249019|ref|NP_755059.1| cold shock-like protein cspI [Escherichia coli CFT073]
gi|157161028|ref|YP_001458346.1| cold shock DNA-binding protein [Escherichia coli HS]
gi|26109426|gb|AAN81629.1|AE016765_31 Cold shock-like protein cspI [Escherichia coli CFT073]
gi|157066708|gb|ABV05963.1| cold shock DNA-binding protein [Escherichia coli HS]
gi|315293040|gb|EFU52392.1| transcriptional repressor activity CueR [Escherichia coli MS
153-1]
Length = 71
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 1 MVH---RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
M+ G +KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V +
Sbjct: 1 MMSNKMTGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQEVEFGIE 57
Query: 58 QNDANGKYSAENLKLV 73
+A ++ +
Sbjct: 58 NGPKG--PAAVHVVAL 71
>gi|317492863|ref|ZP_07951287.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918985|gb|EFV40320.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 70
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+PE DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFISPED---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAVNVVAL 70
>gi|229816847|ref|ZP_04447129.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM
20098]
gi|229785863|gb|EEP21977.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM
20098]
Length = 129
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ KGYGFI E G+DVFL +A+ AG L + V Y +
Sbjct: 1 MPTGRVRWFDAAKGYGFIASE----KGEDVFLPAAAL-PAGTTTLRKNAKVEYAVIAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++KL+ +
Sbjct: 56 G--PQAMDVKLIASGPS 70
>gi|119476410|ref|ZP_01616761.1| Cold-shock DNA-binding protein [marine gamma proteobacterium
HTCC2143]
gi|119450274|gb|EAW31509.1| Cold-shock DNA-binding protein [marine gamma proteobacterium
HTCC2143]
Length = 144
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGF+T SG+++F+H +++ G L EGQ + + V D
Sbjct: 79 GTVKWFNVSKGYGFVTRA----SGEEIFVHFRSISGNGRKVLREGQKIEFSVVDGDKG-- 132
Query: 65 YSAENLKLV 73
AE++ +V
Sbjct: 133 PQAEDVDIV 141
>gi|103486965|ref|YP_616526.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
alaskensis RB2256]
gi|98977042|gb|ABF53193.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
RB2256]
Length = 90
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++K++N DKGYGFI E D F+H +AV +AG+ L + Q V+Y+ +
Sbjct: 22 LMAIGTVKFFNNDKGYGFIENED---GSGDSFVHITAVQAAGMDTLNKEQRVSYEL-ETG 77
Query: 61 ANGKYSAENLK 71
NGK SA NL+
Sbjct: 78 KNGKVSAINLQ 88
>gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
gi|86569963|gb|ABD13772.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
Length = 131
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF++ + G DVF+H++A+ AG+ L G V +
Sbjct: 1 MPTGKVKWFDVDKGFGFLSRDD----GGDVFVHKAAL-PAGVDRLKPGDRVEFGVAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 GD--QALSVRLLTAPPS 70
>gi|209877068|ref|XP_002139976.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
muris RN66]
gi|209555582|gb|EEA05627.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
muris RN66]
Length = 119
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G KW++ KG+GFITP+ +D+F+H+ + G +L + + V Y+ +D
Sbjct: 1 MPHSGVCKWFDSAKGFGFITPDD---GSEDIFVHQQNIKVEGFRSLGQAERVEYEVETDD 57
Query: 61 ANGKYSAENL 70
G+ A N+
Sbjct: 58 K-GRRKAVNV 66
>gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
SK121]
gi|229324342|gb|EEN90097.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
SK121]
Length = 140
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 5 PTGKVKWYDVEKGFGFLSQE----EGEDVYVRASAL-PEGVEGLKAGQRVEFGMAAGRRG 59
Query: 63 GKYSAENLKLVPKSSN 78
A +LK++ + +
Sbjct: 60 --PQALSLKVLEPAPS 73
>gi|77459814|ref|YP_349321.1| cold-shock DNA-binding protein family protein [Pseudomonas
fluorescens Pf0-1]
gi|77383817|gb|ABA75330.1| cold shock-like protein CspD [Pseudomonas fluorescens Pf0-1]
Length = 93
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-----DVFLHRSAVASAGLFNLTEGQLVTYDY 56
+ G +KW+N KG+GFI + + D F H SA+ G L GQ+V ++
Sbjct: 1 MAVGKVKWFNNAKGFGFINTDSREGKDEDGKEIDFFAHYSAIEMDGYKTLKAGQIVKFEI 60
Query: 57 VQNDANGKYSAENLKLVP 74
VQ A ++ V
Sbjct: 61 VQGPKG--LHATKIQNVE 76
>gi|91228780|ref|ZP_01262689.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|254228854|ref|ZP_04922276.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
gi|262396796|ref|YP_003288649.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25]
gi|269966724|ref|ZP_06180801.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
40B]
gi|91187655|gb|EAS73978.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|151938531|gb|EDN57367.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
gi|262340390|gb|ACY54184.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25]
gi|269828647|gb|EEZ82904.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
40B]
Length = 70
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+ + GDDVF+H ++ S G LTEGQ V++ Q +
Sbjct: 6 TGSVKWFNETKGFGFISQDN---GGDDVFVHFRSIVSEGFKTLTEGQKVSFVVEQGNKG- 61
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 62 -LQAAEVTAL 70
>gi|332283634|ref|YP_004415545.1| cold shock protein [Pusillimonas sp. T7-7]
gi|330427587|gb|AEC18921.1| cold shock protein [Pusillimonas sp. T7-7]
Length = 69
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFI PE G D+F H + + G +L E Q V+Y +
Sbjct: 4 ETGIVKWFNNEKGFGFIKPES---GGKDLFAHHTDIIGTGFKSLEENQRVSYVAAEGQKG 60
Query: 63 GKYSAENLKLV 73
A++++++
Sbjct: 61 --PQAKSIQVI 69
>gi|295105906|emb|CBL03449.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae
7-10-1-b]
Length = 67
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKGYGFI+ + GDD+F+H S + + G L E V + +
Sbjct: 1 MSTGTVKWFNADKGYGFISQD----GGDDLFVHFSEIQTDGFKTLEENAHVEFTVAVGN- 55
Query: 62 NGKYSAENLKLV 73
NGK A + +
Sbjct: 56 NGKSQATMVHTI 67
>gi|297568405|ref|YP_003689749.1| cold-shock DNA-binding domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924320|gb|ADH85130.1| cold-shock DNA-binding domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 70
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI + + DVF+H + G +L +GQ V++ V+
Sbjct: 6 NGRVKWFNAPKGFGFIERDNDS----DVFVHYRGIRGEGYRSLQDGQSVSFAVVETPKG- 60
Query: 64 KYSAENLKLV 73
AE+++++
Sbjct: 61 -LQAEDVEVI 69
>gi|91224056|ref|ZP_01259319.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|269966375|ref|ZP_06180460.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
40B]
gi|91190967|gb|EAS77233.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
12G01]
gi|269828962|gb|EEZ83211.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
40B]
Length = 69
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF++ + G DVF+H +A+ S G LTEGQ V+++ Q
Sbjct: 5 TGSVKWFNETKGFGFLSQDN---GGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQGKKG- 60
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 61 -PQATEVTPL 69
>gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|158107416|gb|ABW09613.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length = 132
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ D+G+GF++ + DVF+H++A+ +G+ L G V +
Sbjct: 1 MPTGKVKWFDVDRGFGFLSRDD---GDADVFVHKAAL-PSGVDRLKPGDRVEFGIAAGRK 56
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ +
Sbjct: 57 GD--QALSLRILSAPPS 71
>gi|251787872|ref|YP_003002593.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae
Ech1591]
gi|271502353|ref|YP_003335379.1| cold-shock DNA-binding domain-containing protein [Dickeya
dadantii Ech586]
gi|247536493|gb|ACT05114.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
gi|270345908|gb|ACZ78673.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
Length = 70
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGSVKWFNESKGFGFISPAD---GSKDVFVHFSAIQSDSFKTLYEGQKVEFVIGNGPKG- 61
Query: 64 KYSAENL 70
SAEN+
Sbjct: 62 -PSAENV 67
>gi|300718875|ref|YP_003743678.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661]
gi|299064711|emb|CAX61831.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661]
Length = 70
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+PE DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFNSDKGFGFISPED---GSKDVFVHFSAIQSNDFKTLDEGQKVEFTIENGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ +
Sbjct: 62 -PSAGNVVAL 70
>gi|117926184|ref|YP_866801.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
MC-1]
gi|117609940|gb|ABK45395.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
Length = 71
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N DKG+GFI P+ DVF H S + + +G +L EGQ V ++ D
Sbjct: 6 TGTVKWFNNDKGFGFIAPDN---GSKDVFAHFSEISSGSGFKSLEEGQKVEFNVEPGDKG 62
Query: 63 GKYSAENLK 71
K A +
Sbjct: 63 PK--AVKIT 69
>gi|332716945|ref|YP_004444411.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
gi|325063630|gb|ADY67320.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
Length = 67
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++ DKG+GFITP+ G DVF+H SAV G +L +GQ V+YD Q+
Sbjct: 1 MATGTVKFFAQDKGFGFITPDN---GGPDVFVHISAVGFGG--SLQDGQKVSYDVGQDRK 55
Query: 62 NGKYSAENLKLV 73
GK AEN+ L+
Sbjct: 56 TGKSKAENVSLI 67
>gi|119947299|ref|YP_944979.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119865903|gb|ABM05380.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
37]
Length = 69
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q
Sbjct: 6 QGTVKWFNEAKGFGFIE----QASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGP 61
Query: 64 K 64
+
Sbjct: 62 Q 62
>gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21]
gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21]
Length = 263
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFI E G+D+F+H SAV AGL L EGQ + ++ V D G
Sbjct: 110 KGTVKFFNSQKGFGFIQQET---GGEDIFVHISAVERAGLEGLAEGQELEFNLV--DRGG 164
Query: 64 KYSAENLKLV 73
K SA++L++V
Sbjct: 165 KVSAQDLQVV 174
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GF+T + D F+H SAV +GL + EG+ +D + D
Sbjct: 196 ATGTVKFFNSMKGFGFLTRDD---GQPDAFVHISAVERSGLSQINEGERYEFDL-EVDRR 251
Query: 63 GKYSAENLKLVP 74
GKYSA NL
Sbjct: 252 GKYSAVNLVPAE 263
>gi|315634348|ref|ZP_07889635.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC
33393]
gi|315476938|gb|EFU67683.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC
33393]
Length = 69
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D
Sbjct: 1 MEVGVVKWFNNAKGFGFISAEGSDT---DIFAHYSVIEMDGYRSLKAGQKVQFEVIHGDK 57
Query: 62 NGKYSAENLKLVPK 75
A + V +
Sbjct: 58 G--SHATKIVPVAE 69
>gi|148379362|ref|YP_001253903.1| major cold shock protein [Clostridium botulinum A str. ATCC 3502]
gi|153931072|ref|YP_001383738.1| major cold shock protein [Clostridium botulinum A str. ATCC
19397]
gi|153936819|ref|YP_001387287.1| major cold shock protein [Clostridium botulinum A str. Hall]
gi|153940797|ref|YP_001390748.1| major cold shock protein [Clostridium botulinum F str. Langeland]
gi|168180058|ref|ZP_02614722.1| major cold shock protein [Clostridium botulinum NCTC 2916]
gi|170756947|ref|YP_001781039.1| major cold shock protein [Clostridium botulinum B1 str. Okra]
gi|170760431|ref|YP_001786775.1| major cold shock protein [Clostridium botulinum A3 str. Loch
Maree]
gi|226948665|ref|YP_002803756.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto]
gi|148288846|emb|CAL82930.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
gi|152927116|gb|ABS32616.1| major cold shock protein CspA [Clostridium botulinum A str. ATCC
19397]
gi|152932733|gb|ABS38232.1| major cold shock protein CspA [Clostridium botulinum A str. Hall]
gi|152936693|gb|ABS42191.1| major cold shock protein [Clostridium botulinum F str. Langeland]
gi|169122159|gb|ACA45995.1| major cold shock protein CspA [Clostridium botulinum B1 str.
Okra]
gi|169407420|gb|ACA55831.1| major cold shock protein CspA [Clostridium botulinum A3 str. Loch
Maree]
gi|182669023|gb|EDT80999.1| major cold shock protein [Clostridium botulinum NCTC 2916]
gi|226843516|gb|ACO86182.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto]
gi|295318821|gb|ADF99198.1| major cold shock protein [Clostridium botulinum F str. 230613]
Length = 67
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G++KW+N +KG+GFI E DVF+H SA+ NL EGQ V ++ +
Sbjct: 1 MKTGTVKWFNSEKGFGFIEVE----GEKDVFVHFSAIQGDEPRKNLEEGQKVQFEVEEGQ 56
Query: 61 ANGKYSAENLKL 72
G +A +KL
Sbjct: 57 K-GPQAANVIKL 67
>gi|2493773|sp|P72192|TAPB_PSEFR RecName: Full=Temperature acclimation protein B; AltName:
Full=E8.0
gi|1513086|gb|AAC46000.1| temperature acclimation protein B [Pseudomonas fragi]
Length = 63
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59
Query: 62 NGKYSA 67
A
Sbjct: 60 G--MQA 63
>gi|297801940|ref|XP_002868854.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
lyrata]
gi|297314690|gb|EFH45113.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
lyrata]
Length = 195
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW++ KG+GFITP+ GDD+F+H+S++ S G +L + V ++ + D N
Sbjct: 12 KGSVKWFDTQKGFGFITPDD---GGDDLFVHQSSIRSEGFRSLAADEAVEFEV-EMDNNS 67
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 68 RPKAIDVS 75
>gi|288922018|ref|ZP_06416226.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
gi|288346634|gb|EFC80955.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
Length = 131
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ D+G+GF++ + GDDVF+H++A+ AG+ L G V +
Sbjct: 1 MPTGKVKWFDVDRGFGFLSRDD----GDDVFVHKAAL-PAGVDRLKPGDRVEFGVAAGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ +
Sbjct: 56 GD--QALSVRILAAPPS 70
>gi|262377174|ref|ZP_06070399.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
gi|262307912|gb|EEY89050.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
Length = 69
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF H ++S+G L EGQ V++ V
Sbjct: 6 TGTVKWFNETKGFGFIQQE----SGPDVFAHFKEISSSGFKTLFEGQRVSFSVVDGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PNAINIVAL 69
>gi|332856166|ref|ZP_08436156.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
gi|332871668|ref|ZP_08440139.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
gi|332727143|gb|EGJ58603.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
gi|332731306|gb|EGJ62602.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
Length = 83
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + +G DVF H ++S+G L EGQ V+++ Q
Sbjct: 21 GTVKWFNETKGFGFIQQD----TGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 74
Query: 65 YSAENL 70
+A N+
Sbjct: 75 PTATNI 80
>gi|302875711|ref|YP_003844344.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|307689143|ref|ZP_07631589.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|302578568|gb|ADL52580.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
743B]
Length = 68
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G++KW+N +KG+GFI EG DVF+H SA+ S NL EG+ V ++ Q
Sbjct: 1 MKTGTVKWFNQEKGFGFIEVEGEN----DVFVHFSAIQSDSPRKNLEEGEKVEFEVEQGP 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--LQAANVVKL 67
>gi|255073219|ref|XP_002500284.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
gi|226515546|gb|ACO61542.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
Length = 122
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFITP+ D++F+H++A+ S G +L E + V + ++D +G
Sbjct: 6 TGKVKWFNTQKGFGFITPDD---GSDEIFVHQTAIHSEGFRSLREDEPVEFVIEKSD-DG 61
Query: 64 KYSAENLK 71
+ A +
Sbjct: 62 RTKAIEVT 69
>gi|254470060|ref|ZP_05083464.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
gi|211960371|gb|EEA95567.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
Length = 215
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++K++ DKG+GFITP+ DVF+H SAV +GL L GQ ++++ +
Sbjct: 121 RQSGTVKFFKLDKGFGFITPDEGEN---DVFVHISAVERSGLTTLDSGQRISFETEPDRR 177
Query: 62 NGKYSAENLKLV--PKSSN 78
A L+L P +S+
Sbjct: 178 GKGPKAVELRLEDGPAASS 196
>gi|284921457|emb|CBG34526.1| cold shock-like protein [Escherichia coli 042]
Length = 70
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V +
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKG- 61
Query: 64 KYSAENLKLV 73
+A ++ +
Sbjct: 62 -PAAVHVVAL 70
>gi|110598159|ref|ZP_01386437.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
gi|110340291|gb|EAT58788.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
Length = 69
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V + Q
Sbjct: 7 GTVKWFNEEKGYGFIE----QKGGKDVFVHHSAINGTGRKTLVEGQKVLMEVTQGAKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTPL 69
>gi|261212918|ref|ZP_05927202.1| cold shock protein CspG [Vibrio sp. RC341]
gi|262402962|ref|ZP_06079522.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
gi|260837983|gb|EEX64660.1| cold shock protein CspG [Vibrio sp. RC341]
gi|262350461|gb|EEY99594.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
Length = 70
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFITP+ G DVF+H +++AS G+ L EGQ V + Q
Sbjct: 6 TGSVKWFNESKGFGFITPD---IGGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQGSKG- 61
Query: 64 KYSAENL 70
A N+
Sbjct: 62 -LQAVNV 67
>gi|332187878|ref|ZP_08389611.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
gi|332012039|gb|EGI54111.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
Length = 284
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFI + D F+H SAV AG+ +L EG + ++ + D
Sbjct: 217 ATGTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGMGSLNEGDRLQFEI-EVDRR 272
Query: 63 GKYSAENLK 71
GKY+A NL+
Sbjct: 273 GKYAAVNLQ 281
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GF+ + G+DVF+H SAV AGL L EGQ + + V D G
Sbjct: 105 TGVVKFFNAQKGFGFVVRDD---GGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGG 159
Query: 64 KYSAENLKL 72
+ SA LK+
Sbjct: 160 RISATELKI 168
>gi|290968845|ref|ZP_06560382.1| cold-shock DNA-binding domain protein [Megasphaera genomosp.
type_1 str. 28L]
gi|290781141|gb|EFD93732.1| cold-shock DNA-binding domain protein [Megasphaera genomosp.
type_1 str. 28L]
Length = 65
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYGFI + G DVF+H SA+ G +L EGQ V +D +
Sbjct: 3 GKVKWFSAEKGYGFIEKD----GGGDVFVHFSAIQEDGFKSLAEGQEVEFDVQEGARG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQAANV 62
>gi|311695726|gb|ADP98599.1| cold shock, CspA [marine bacterium HP15]
Length = 68
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT E G DVF+H S + G L EGQ V + Q
Sbjct: 5 TGNVKFFNEAKGFGFITRE----GGADVFVHYSNIQGGGFKTLAEGQEVEFTVTQGQKG- 59
Query: 64 KYSAENL 70
AEN+
Sbjct: 60 -PQAENV 65
>gi|255975690|ref|ZP_05426276.1| cold shock protein [Enterococcus faecalis T2]
gi|307277908|ref|ZP_07558992.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
gi|255968562|gb|EET99184.1| cold shock protein [Enterococcus faecalis T2]
gi|306505305|gb|EFM74491.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
Length = 68
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ KGYGFI D++F+H +A+ G +L E Q V ++ ++ +
Sbjct: 1 MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQFVEFEIMEGNR 56
Query: 62 NGKYSAENLKLVP 74
A ++K +
Sbjct: 57 G--LQAAHVKKID 67
>gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
gi|325554167|gb|EGD23842.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
Length = 140
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF++ E G+DV++ SA+ + L GQ V +D
Sbjct: 5 PTGKVKWYDVEKGFGFLSQE----EGEDVYVRASALPGD-VDGLKAGQRVEFDMAAGRRG 59
Query: 63 GKYSAENLKLVPKSS 77
A ++L+ +
Sbjct: 60 --PQALKVQLLEPAP 72
>gi|322436156|ref|YP_004218368.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321163883|gb|ADW69588.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 92
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ + G + W++ KG+GF++ + G DVF+H SA+ + G +L EG+ V++D VQ
Sbjct: 1 MAQYLGKVMWFSNAKGFGFLSRD----GGADVFVHFSAIVNDGYKSLAEGEDVSFDVVQG 56
Query: 60 DANGKYSAENLKLV 73
D A ++ V
Sbjct: 57 DKG--PQAAEVRRV 68
>gi|229528227|ref|ZP_04417618.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
gi|229334589|gb|EEO00075.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
Length = 72
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFITP+ G DVF+H +++ S G+ L EGQ V + Q
Sbjct: 8 TGSVKWFNESKGFGFITPDS---GGSDVFVHFNSITSGGVKTLFEGQKVNFSIEQGSKG- 63
Query: 64 KYSAENL 70
A N+
Sbjct: 64 -LQAVNV 69
>gi|254465282|ref|ZP_05078693.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
gi|206686190|gb|EDZ46672.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
bacterium Y4I]
Length = 68
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KGYGFI P+ E G DVF+H SAV +G+ L + + Y+ +
Sbjct: 1 MPSGTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGMTGLADNMKIGYELSEGRD 57
Query: 62 NGKYSAE 68
K +AE
Sbjct: 58 GRKMAAE 64
>gi|71083183|ref|YP_265902.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062]
gi|91762387|ref|ZP_01264352.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002]
gi|71062296|gb|AAZ21299.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062]
gi|91718189|gb|EAS84839.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002]
Length = 70
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E D F+H SAV +AG+ L EG + ++
Sbjct: 5 KGTVKWFNGKKGFGFIEREDKE---KDAFVHASAVKTAGMRFLNEGDKLEFEMEDGPKG- 60
Query: 64 KYSAENLKLVP 74
SA NLK +
Sbjct: 61 -PSAVNLKKID 70
>gi|292493470|ref|YP_003528909.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
Nc4]
gi|291582065|gb|ADE16522.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
Nc4]
Length = 69
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KGYGFI E SG D+F+H ++ G L EGQ V++ VQ
Sbjct: 5 QTGTVKWFNDSKGYGFIQRE----SGGDLFVHYRSIVGQGHRTLKEGQQVSFVEVQGHKG 60
Query: 63 GKYSAENLKLV 73
A+N+ ++
Sbjct: 61 --PQADNVIVL 69
>gi|225874667|ref|YP_002756126.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
gi|225793793|gb|ACO33883.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
Length = 87
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N KGYGFI +G+DVF+H SA+ +G L EG+ V ++ Q
Sbjct: 22 ENGVVKWFNGAKGYGFIQR----STGEDVFVHFSAIQDSGYKTLNEGEAVEFECQQGPKG 77
Query: 63 GKYSAENL 70
+A N+
Sbjct: 78 --LNAANV 83
>gi|50955362|ref|YP_062650.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951844|gb|AAT89545.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 72
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 8 KWYNPDKGYGFITPEGSTESGD-------DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
KW+N +KGYGFIT + + + G+ DVF+H SA+ G L EGQ V ++
Sbjct: 2 KWFNAEKGYGFITVDSNVDGGEQNVTVHQDVFVHYSAIDMNGYKVLEEGQQVEFEVGTGS 61
Query: 61 ANGKYSAENLKLV 73
AE+++ +
Sbjct: 62 KG--PQAESVRPL 72
>gi|302668966|ref|YP_003832791.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus
B316]
gi|302397306|gb|ADL36209.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus
B316]
Length = 72
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GFIT E G+DVF+H SA++S G LT+ + V +D +D G
Sbjct: 7 KGAVKWFDNYKGFGFITSED----GEDVFVHYSAISSDGYRKLTQDEKVEFDVRIDDK-G 61
Query: 64 KYSAENLKLVP 74
+ A N++ +
Sbjct: 62 RTVAVNVRKIS 72
>gi|262371507|ref|ZP_06064821.1| cold shock protein [Acinetobacter johnsonii SH046]
gi|294648334|ref|ZP_06725843.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
gi|262313558|gb|EEY94611.1| cold shock protein [Acinetobacter johnsonii SH046]
gi|292825776|gb|EFF84470.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
Length = 71
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ+V + Q
Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQMVEFSVAQGQKG- 62
Query: 64 KYSAENL 70
+A N+
Sbjct: 63 -PNAVNI 68
>gi|317405219|gb|EFV85558.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54]
Length = 67
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K +N +KGYGFITPE G D+F H S + +G +L E Q V++
Sbjct: 1 METGVVKGFNSEKGYGFITPE---AGGKDLFAHFSEIQGSGFKSLEENQRVSFVTANGPK 57
Query: 62 NGKYSAENLKLV 73
A ++++
Sbjct: 58 G--PQATKIQVL 67
>gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus equi 103S]
gi|311887761|emb|CBH47073.1| cold shock protein [Rhodococcus equi 103S]
Length = 147
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF++ E G+DV++ SA+ + L GQ V +D
Sbjct: 12 PTGKVKWYDVEKGFGFLSQE----EGEDVYVRASALPGD-VDGLKAGQRVEFDMAAGRRG 66
Query: 63 GKYSAENLKLVPKSS 77
A ++L+ +
Sbjct: 67 --PQALKVQLLEPAP 79
>gi|169796394|ref|YP_001714187.1| cold shock-like protein [Acinetobacter baumannii AYE]
gi|213156868|ref|YP_002318913.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
AB0057]
gi|215483856|ref|YP_002326081.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
gi|169149321|emb|CAM87205.1| cold shock-like protein [Acinetobacter baumannii AYE]
gi|213056028|gb|ACJ40930.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
AB0057]
gi|213988514|gb|ACJ58813.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
Length = 69
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + +G DVF H ++S+G L EGQ V+++ Q
Sbjct: 7 GTVKWFNETKGFGFIQQD----TGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60
Query: 65 YSAENL 70
+A N+
Sbjct: 61 PTATNI 66
>gi|270007992|gb|EFA04440.1| hypothetical protein TcasGA2_TC014742 [Tribolium castaneum]
Length = 192
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW+N KG+GFITP+ G DVF+H+S + +G +L + + V ++ +D
Sbjct: 38 RGKCKWFNVAKGWGFITPDD---GGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSDKG 93
>gi|120555865|ref|YP_960216.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120325714|gb|ABM20029.1| cold shock protein E (CspE) [Marinobacter aquaeolei VT8]
Length = 68
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFIT E G DVF+H S++ G L EGQ V + +
Sbjct: 5 KGNVKFFNEAKGFGFITREN----GADVFVHYSSIQGGGFKTLAEGQEVEFTVTEGQKG- 59
Query: 64 KYSAENL 70
AEN+
Sbjct: 60 -PQAENV 65
>gi|297563111|ref|YP_003682085.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847559|gb|ADH69579.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 127
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF+T + G +VF+H S++ G +L GQ V + +
Sbjct: 1 MPTGKVKWYDGDKGFGFLTRDD----GGEVFVHSSSLPP-GTTSLRPGQKVDFGVAEGRK 55
Query: 62 NGKYSAENLKLVPK 75
A ++L+
Sbjct: 56 G--AQALQVRLLED 67
>gi|52425150|ref|YP_088287.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307202|gb|AAU37702.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
Length = 69
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EGS D+F H S + G +L GQ V ++ V +
Sbjct: 1 MEVGVVKWFNNAKGFGFINAEGSDA---DIFAHYSVIEMDGYRSLKAGQKVNFEVVHGEK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|152979111|ref|YP_001344740.1| cold-shock DNA-binding domain-containing protein [Actinobacillus
succinogenes 130Z]
gi|150840834|gb|ABR74805.1| putative cold-shock DNA-binding domain protein [Actinobacillus
succinogenes 130Z]
Length = 69
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI EGS +D+F H S + G +L GQ V ++ + D
Sbjct: 1 MEVGVVKWFNNAKGFGFINAEGS---DEDIFAHFSVIEMDGYRSLKAGQKVNFEVIHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|290476552|ref|YP_003469457.1| low-temperature-responsive gene, nucleic acid-binding domain
[Xenorhabdus bovienii SS-2004]
gi|289175890|emb|CBJ82693.1| low-temperature-responsive gene, nucleic acid-binding domain
[Xenorhabdus bovienii SS-2004]
Length = 70
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+PE DVF+H SA+ L EGQ V + ++ A G
Sbjct: 6 TGLVKWFDAGKGFGFISPED---GSKDVFVHFSAIQGNDFKTLDEGQKVEFSI-ESGAKG 61
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 62 PSAANVIAL 70
>gi|319776304|ref|YP_004138792.1| cold shock protein [Haemophilus influenzae F3047]
gi|319897065|ref|YP_004135260.1| cold shock protein homolog [Haemophilus influenzae F3031]
gi|317432569|emb|CBY80929.1| cold shock protein homolog [Haemophilus influenzae F3031]
gi|317450895|emb|CBY87120.1| cold shock protein homolog [Haemophilus influenzae F3047]
Length = 72
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + D
Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKAGQKVQFEVLHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|46203051|ref|ZP_00052170.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 263
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWY+P KG+GF++ G DVF+HRSA++ AGL +L EGQ VT + V
Sbjct: 198 TGTVKWYDPAKGFGFVSVND---GGKDVFVHRSALSRAGLDSLAEGQQVTLNVVDGQKGR 254
Query: 64 KYSAENL 70
+ + N+
Sbjct: 255 EAQSINV 261
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q
Sbjct: 70 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG--P 124
Query: 66 SAENLKLVPKSS 77
++ V S+
Sbjct: 125 QVTSVTSVDTST 136
>gi|323169843|gb|EFZ55499.1| cold shock-like protein cspI [Escherichia coli LT-68]
Length = 66
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V +
Sbjct: 2 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKG- 57
Query: 64 KYSAENLKLV 73
+A ++ +
Sbjct: 58 -PAAVHVVAL 66
>gi|326774945|ref|ZP_08234210.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|326655278|gb|EGE40124.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 67
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI EG G DVF H S +A+ GL L EGQ VT+D +
Sbjct: 1 MASGTVKWFNAAKGFGFIEQEG---DGPDVFAHFSNIAAQGLVELIEGQKVTFDIAPSRK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|270261474|ref|ZP_06189747.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13]
gi|270044958|gb|EFA18049.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13]
Length = 70
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQRVEFTIESGAKG- 61
Query: 64 KYSAENLKLV 73
SA N+ ++
Sbjct: 62 -PSAGNVVVL 70
>gi|255318100|ref|ZP_05359344.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|262379848|ref|ZP_06073004.1| cold shock domain-containing protein CspD [Acinetobacter
radioresistens SH164]
gi|255304811|gb|EET83984.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|262299305|gb|EEY87218.1| cold shock domain-containing protein CspD [Acinetobacter
radioresistens SH164]
Length = 69
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V++ Q
Sbjct: 6 NGTVKWFNEAKGFGFIQQE----SGSDVFAHFSEIASSGFKTLFEGQQVSFSVAQGQKG- 60
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 61 -PNAVNIVAL 69
>gi|297580078|ref|ZP_06942005.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
RC385]
gi|297535724|gb|EFH74558.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
RC385]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N +KG+GFITP+ G DVF+H +++AS G+ L EGQ V + Q
Sbjct: 6 TGSVKWFNENKGFGFITPD---IGGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQGSKG- 61
Query: 64 KYSAENL 70
A N+
Sbjct: 62 -LQAVNV 67
>gi|193875878|gb|ACF24575.1| glycine-rich nucleic acid binding protein [Gymnochlora stellata]
Length = 290
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G+ KW+N KGYGFI P E DD+F+H++A+ + G +L EG+ V +D + DA
Sbjct: 23 RQSGTCKWFNTVKGYGFILP---QEGKDDIFVHQTAIKAVGFRSLAEGEQVEFDV-EVDA 78
Query: 62 NGKYSAENLK 71
G+ A N+
Sbjct: 79 TGRKKARNVT 88
>gi|300925271|ref|ZP_07141166.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
gi|300418604|gb|EFK01915.1| transcriptional repressor activity CueR [Escherichia coli MS
182-1]
Length = 71
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 1 MV---HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
M+ G +KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V +
Sbjct: 1 MMFNKMTGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQEVEFGIE 57
Query: 58 QNDANGKYSAENLKLV 73
+A ++ +
Sbjct: 58 NGPKG--PAAVHVVAL 71
>gi|163802491|ref|ZP_02196384.1| bifunctional GMP synthase/glutamine amidotransferase protein
[Vibrio sp. AND4]
gi|159173792|gb|EDP58607.1| bifunctional GMP synthase/glutamine amidotransferase protein
[Vibrio sp. AND4]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N KG+GF+T + G DVF+H A+ S G L EGQ V++ Q
Sbjct: 5 ATGSVKWFNESKGFGFLTQDN---GGADVFVHFQAIVSEGFKTLVEGQKVSFSVEQGPKG 61
Query: 63 GKYSAENL 70
A N+
Sbjct: 62 --LQAANV 67
>gi|108809647|ref|YP_653563.1| major cold shock protein Cspa2 [Yersinia pestis Antiqua]
gi|108813687|ref|YP_649454.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
gi|145597566|ref|YP_001161642.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides F]
gi|153948953|ref|YP_001399367.1| cold shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis IP 31758]
gi|153997419|ref|ZP_02022519.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
gi|162421711|ref|YP_001605762.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
Angola]
gi|165927588|ref|ZP_02223420.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937409|ref|ZP_02225972.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166012234|ref|ZP_02233132.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214132|ref|ZP_02240167.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401979|ref|ZP_02307462.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420637|ref|ZP_02312390.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425433|ref|ZP_02317186.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218930653|ref|YP_002348528.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
gi|229836786|ref|ZP_04456951.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
gi|229839314|ref|ZP_04459473.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899878|ref|ZP_04515019.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904189|ref|ZP_04519300.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
gi|270488628|ref|ZP_06205702.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|2275140|emb|CAB10779.1| hypothetical protein [Yersinia pestis]
gi|108777335|gb|ABG19854.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108781560|gb|ABG15618.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115349264|emb|CAL22231.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
gi|145209262|gb|ABP38669.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149289056|gb|EDM39136.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
gi|152960448|gb|ABS47909.1| 'Cold-shock' DNA-binding domain [Yersinia pseudotuberculosis IP
31758]
gi|162354526|gb|ABX88474.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
gi|165914514|gb|EDR33128.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920482|gb|EDR37759.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165988853|gb|EDR41154.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204619|gb|EDR49099.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961443|gb|EDR57464.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048565|gb|EDR59973.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055447|gb|EDR65240.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229678307|gb|EEO74412.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
gi|229687370|gb|EEO79445.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695680|gb|EEO85727.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705729|gb|EEO91738.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
gi|270337132|gb|EFA47909.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|320017194|gb|ADW00766.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAVNV 67
>gi|330813537|ref|YP_004357776.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486632|gb|AEA81037.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
sp. IMCC9063]
Length = 68
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N KG+GFI E DVF+H SAV +AGL L EG + +D
Sbjct: 1 MSLKGKVKWFNEKKGFGFIERED---GKKDVFVHISAVQAAGLDYLDEGSSINFDVEDGP 57
Query: 61 ANGKYSAENLK 71
SA NLK
Sbjct: 58 KG--PSAVNLK 66
>gi|322435623|ref|YP_004217835.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321163350|gb|ADW69055.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 89
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G + W+N KG+GFITPE +G DVF+H SA+ G L EG V ++
Sbjct: 3 RQTGKVAWFNNGKGFGFITPE----TGPDVFVHYSAIMLDGFKTLDEGDTVDFEIETGST 58
Query: 62 NGKYSAENLKL 72
+ + ++L
Sbjct: 59 GRPEARKVVRL 69
>gi|226330479|ref|ZP_03805997.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
gi|225201274|gb|EEG83628.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFITP DVF+H SA+ S L EGQ V++
Sbjct: 6 TGTVKWFDEGKGFGFITPAD---GSKDVFVHFSAIQSDNFKTLAEGQQVSFTMENGMKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVVAL 70
>gi|197284851|ref|YP_002150723.1| cold shock protein [Proteus mirabilis HI4320]
gi|194682338|emb|CAR42146.1| cold shock protein [Proteus mirabilis HI4320]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFITP DVF+H SA+ S L EGQ V++
Sbjct: 6 TGTVKWFDEGKGFGFITPAD---GSKDVFVHFSAIQSDNFKTLAEGQQVSFTMENGMKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVVAL 70
>gi|319935036|ref|ZP_08009479.1| cold shock protein cspC [Coprobacillus sp. 29_1]
gi|319810054|gb|EFW06423.1| cold shock protein cspC [Coprobacillus sp. 29_1]
Length = 65
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI G DVF+H S + G +L EG++V ++ Q+D
Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIVQDGYKSLNEGEVVEFELYQSDRG- 56
Query: 64 KYSAENLKLV 73
A+N+ V
Sbjct: 57 -LQAKNVVKV 65
>gi|153953338|ref|YP_001394103.1| CspA [Clostridium kluyveri DSM 555]
gi|219853967|ref|YP_002471089.1| hypothetical protein CKR_0624 [Clostridium kluyveri NBRC 12016]
gi|146346219|gb|EDK32755.1| CspA [Clostridium kluyveri DSM 555]
gi|219567691|dbj|BAH05675.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 67
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ G++KW+N +KG+GFI +DVF+H +A+ + NL EGQ V +D +
Sbjct: 1 MKTGTVKWFNSEKGFGFIEV----PGENDVFVHFTAIQSNEARKNLEEGQKVQFDVEEGP 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--LQAANVVKL 67
>gi|126656639|ref|ZP_01727853.1| cold shock protein [Cyanothece sp. CCY0110]
gi|126621859|gb|EAZ92567.1| cold shock protein [Cyanothece sp. CCY0110]
Length = 64
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ KGYGFI P+ GDD+F+H S V S +L EGQ V Y+ Q
Sbjct: 1 MAQGQVKWFDVQKGYGFIAPQD---GGDDLFVHYSEVQS---KSLEEGQTVEYEVGQGRK 54
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 55 G--PCAVNVRSI 64
>gi|317508884|ref|ZP_07966523.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316252845|gb|EFV12276.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 77
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++W++P+KG+GFI P+ +VF+ +A+ G L E Q V ++
Sbjct: 1 MALGTVQWFDPEKGFGFIAPDD---GSAEVFVRYTAIEGRGFRKLVESQKVEFETALIGK 57
Query: 62 NGKYSAENLKLVPKSS 77
+ A ++ V ++
Sbjct: 58 D--LHATAVRAVEEAP 71
>gi|254514074|ref|ZP_05126135.1| cold shock protein [gamma proteobacterium NOR5-3]
gi|219676317|gb|EED32682.1| cold shock protein [gamma proteobacterium NOR5-3]
Length = 171
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E GD++F+H ++ G +L +G V Y V D
Sbjct: 106 ENGTVKWFNGTKGFGFIIREN----GDEIFVHHRSIVGEGRRSLRDGAAVKYRVVTTDKG 161
Query: 63 GKYSAENLKLVP 74
AE ++ +
Sbjct: 162 --PQAEEVEAID 171
>gi|15602346|ref|NP_245418.1| CspD [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720739|gb|AAK02565.1| CspD [Pasteurella multocida subsp. multocida str. Pm70]
Length = 69
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EG + D+F H S + G +L GQ V ++ V D
Sbjct: 1 MEVGVVKWFNNAKGFGFISAEG---TDADIFAHYSVIEMEGYRSLKAGQKVQFEVVHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|300719018|ref|YP_003743821.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661]
gi|299064854|emb|CAX61974.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N DKG+GFI+P+ DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFNADKGFGFISPQD---GSKDVFVHFSAIQSNDFKTLDEGQTVQFSVENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|291285780|ref|YP_003502598.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str.
CB9615]
gi|331666067|ref|ZP_08366961.1| conserved domain protein [Escherichia coli TA143]
gi|331680509|ref|ZP_08381168.1| conserved domain protein [Escherichia coli H591]
gi|290765653|gb|ADD59614.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str.
CB9615]
gi|323190384|gb|EFZ75660.1| cold shock-like protein cspI [Escherichia coli RN587/1]
gi|324112028|gb|EGC06006.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|325499892|gb|EGC97751.1| Cold shock-like protein cspI [Escherichia fergusonii ECD227]
gi|331057118|gb|EGI29112.1| conserved domain protein [Escherichia coli TA143]
gi|331071972|gb|EGI43308.1| conserved domain protein [Escherichia coli H591]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V +
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQQVEFGIENGPKG- 61
Query: 64 KYSAENLKLV 73
+A ++ +
Sbjct: 62 -PAAVHVVAL 70
>gi|261868109|ref|YP_003256031.1| cold shock domain-containing protein CspD [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293390022|ref|ZP_06634356.1| cold shock domain protein CspD [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413441|gb|ACX82812.1| cold shock domain protein CspD [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290950556|gb|EFE00675.1| cold shock domain protein CspD [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 69
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D
Sbjct: 1 MEVGVVKWFNNAKGFGFISVEGSDT---DIFAHYSVIEMEGYRSLKAGQKVRFEVIHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|84498519|ref|ZP_00997289.1| cold shock protein [Janibacter sp. HTCC2649]
gi|84381262|gb|EAP97146.1| cold shock protein [Janibacter sp. HTCC2649]
Length = 134
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+Y+ +KG+GF++ + E G DVF+ SA+ G+ L G + + V+
Sbjct: 1 MPTGKVKFYDSEKGFGFVSTDDPAEGG-DVFVPSSAL-PEGVTALKNGARIEFGIVEGRR 58
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +++
Sbjct: 59 G--AQALSVRLLEPAAS 73
>gi|165976142|ref|YP_001651735.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190150037|ref|YP_001968562.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303251483|ref|ZP_07337659.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303252356|ref|ZP_07338522.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307245585|ref|ZP_07527671.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247704|ref|ZP_07529743.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249938|ref|ZP_07531910.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252281|ref|ZP_07534178.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254540|ref|ZP_07536375.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256748|ref|ZP_07538527.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258995|ref|ZP_07540726.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307261191|ref|ZP_07542866.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263370|ref|ZP_07544986.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|165876243|gb|ABY69291.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189915168|gb|ACE61420.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302648815|gb|EFL79005.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649715|gb|EFL79895.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306853287|gb|EFM85506.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306855807|gb|EFM87971.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306857998|gb|EFM90082.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860203|gb|EFM92219.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862523|gb|EFM94482.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864796|gb|EFM96700.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867019|gb|EFM98876.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306868922|gb|EFN00724.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871248|gb|EFN02976.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 68
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + D+F H S + S G +L GQ V ++ + +
Sbjct: 1 MEVGIVKWFNSAKGFGFITSDNVEG---DIFAHFSEIQSEGYRSLKVGQKVQFELINGER 57
Query: 62 NGKYSAENLKLVP 74
SA + LV
Sbjct: 58 G--ASAAKISLVE 68
>gi|293393437|ref|ZP_06637748.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
gi|291424038|gb|EFE97256.1| CspA family cold shock transcriptional regulator [Serratia
odorifera DSM 4582]
Length = 75
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 11 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFTIENGQKG- 66
Query: 64 KYSAENLKLV 73
SA N+ ++
Sbjct: 67 -PSAGNVVVL 75
>gi|330813601|ref|YP_004357840.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063]
gi|327486696|gb|AEA81101.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063]
Length = 68
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N KGYGFI + DVF+H SAV +G+ L EG ++++D
Sbjct: 1 MSIKGKVKWFNGSKGYGFIERDDKE---KDVFVHMSAVKDSGVDYLDEGDVLSFDIEDGQ 57
Query: 61 ANGKYSAENLKL 72
SA NLK
Sbjct: 58 KG--PSAVNLKK 67
>gi|16129511|ref|NP_416070.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. MG1655]
gi|89108394|ref|AP_002174.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
gi|170020098|ref|YP_001725052.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli ATCC 8739]
gi|170081220|ref|YP_001730540.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. DH10B]
gi|191169221|ref|ZP_03030975.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|193066944|ref|ZP_03047913.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194436556|ref|ZP_03068657.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|218551648|ref|YP_002385440.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
35469]
gi|218554114|ref|YP_002387027.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
gi|218561575|ref|YP_002394488.1| cold shock protein; Qin prophage [Escherichia coli S88]
gi|218699878|ref|YP_002407507.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
gi|218705054|ref|YP_002412573.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
gi|238900772|ref|YP_002926568.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
gi|254161612|ref|YP_003044720.1| cold shock protein [Escherichia coli B str. REL606]
gi|256022767|ref|ZP_05436632.1| cold shock protein [Escherichia sp. 4_1_40B]
gi|260855290|ref|YP_003229181.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
gi|297521188|ref|ZP_06939574.1| cold shock protein; Qin prophage [Escherichia coli OP50]
gi|300899658|ref|ZP_07117889.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300903922|ref|ZP_07121817.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300917740|ref|ZP_07134386.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300938341|ref|ZP_07153095.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|301025109|ref|ZP_07188703.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|301307308|ref|ZP_07213320.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|301326423|ref|ZP_07219775.1| transcriptional repressor activity CueR [Escherichia coli MS
78-1]
gi|301647713|ref|ZP_07247506.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|307138206|ref|ZP_07497562.1| cold shock protein; Qin prophage [Escherichia coli H736]
gi|307310883|ref|ZP_07590529.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|312969564|ref|ZP_07783747.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|331642140|ref|ZP_08343275.1| conserved domain protein [Escherichia coli H736]
gi|331652930|ref|ZP_08353935.1| conserved domain protein [Escherichia coli M718]
gi|331668007|ref|ZP_08368862.1| conserved domain protein [Escherichia coli TA271]
gi|331673141|ref|ZP_08373909.1| conserved domain protein [Escherichia coli TA280]
gi|331683057|ref|ZP_08383658.1| conserved domain protein [Escherichia coli H299]
gi|71154170|sp|P0A987|CSPI_ECOL6 RecName: Full=Cold shock-like protein CspI; Short=CPS-I
gi|71154171|sp|P0A986|CSPI_ECOLI RecName: Full=Cold shock-like protein CspI; Short=CPS-I
gi|1742550|dbj|BAA15254.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
gi|1787834|gb|AAC74625.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. MG1655]
gi|169755026|gb|ACA77725.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169889055|gb|ACB02762.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. DH10B]
gi|190900732|gb|EDV60527.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|192959534|gb|EDV89968.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194424588|gb|EDX40574.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|218359190|emb|CAQ91855.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
35469]
gi|218360882|emb|CAQ98452.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
gi|218368344|emb|CAR06163.1| cold shock protein; Qin prophage [Escherichia coli S88]
gi|218369864|emb|CAR17638.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
gi|218432151|emb|CAR13039.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
gi|222033313|emb|CAP76053.1| Cold shock-like protein cspI [Escherichia coli LF82]
gi|238863367|gb|ACR65365.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
gi|253973513|gb|ACT39184.1| cold shock protein [Escherichia coli B str. REL606]
gi|257753939|dbj|BAI25441.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
gi|260449326|gb|ACX39748.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|300356783|gb|EFJ72653.1| transcriptional repressor activity CueR [Escherichia coli MS
198-1]
gi|300396218|gb|EFJ79756.1| transcriptional repressor activity CueR [Escherichia coli MS
69-1]
gi|300404082|gb|EFJ87620.1| transcriptional repressor activity CueR [Escherichia coli MS
84-1]
gi|300415017|gb|EFJ98327.1| transcriptional repressor activity CueR [Escherichia coli MS
115-1]
gi|300456677|gb|EFK20170.1| transcriptional repressor activity CueR [Escherichia coli MS
21-1]
gi|300837501|gb|EFK65261.1| transcriptional repressor activity CueR [Escherichia coli MS
124-1]
gi|300846839|gb|EFK74599.1| transcriptional repressor activity CueR [Escherichia coli MS
78-1]
gi|301074148|gb|EFK88954.1| transcriptional repressor activity CueR [Escherichia coli MS
146-1]
gi|306909061|gb|EFN39557.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|310337849|gb|EFQ02938.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|312946155|gb|ADR26982.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG
857C]
gi|315060851|gb|ADT75178.1| Qin prophage; cold shock protein [Escherichia coli W]
gi|315136193|dbj|BAJ43352.1| cold shock DNA-binding protein [Escherichia coli DH1]
gi|315253268|gb|EFU33236.1| transcriptional repressor activity CueR [Escherichia coli MS
85-1]
gi|320178969|gb|EFW53930.1| Cold shock protein CspI [Shigella boydii ATCC 9905]
gi|320197740|gb|EFW72348.1| Cold shock protein CspI [Escherichia coli EC4100B]
gi|320643970|gb|EFX13059.1| putative cold shock protein [Escherichia coli O157:H- str.
493-89]
gi|320649396|gb|EFX17940.1| putative cold shock protein [Escherichia coli O157:H- str. H
2687]
gi|320660357|gb|EFX27831.1| putative cold shock protein [Escherichia coli O55:H7 str. USDA
5905]
gi|323156718|gb|EFZ42856.1| cold shock-like protein cspI [Escherichia coli EPECa14]
gi|323378579|gb|ADX50847.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323942031|gb|EGB38209.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323947939|gb|EGB43934.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323962248|gb|EGB57839.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323973806|gb|EGB68980.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|331038938|gb|EGI11158.1| conserved domain protein [Escherichia coli H736]
gi|331049028|gb|EGI21100.1| conserved domain protein [Escherichia coli M718]
gi|331064749|gb|EGI36653.1| conserved domain protein [Escherichia coli TA271]
gi|331069339|gb|EGI40726.1| conserved domain protein [Escherichia coli TA280]
gi|331079272|gb|EGI50469.1| conserved domain protein [Escherichia coli H299]
gi|332343261|gb|AEE56595.1| cold shock-like protein CspI [Escherichia coli UMNK88]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V +
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKG- 61
Query: 64 KYSAENLKLV 73
+A ++ +
Sbjct: 62 -PAAVHVVAL 70
>gi|45443632|ref|NP_995171.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
str. 91001]
gi|145597567|ref|YP_001161643.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides F]
gi|153997418|ref|ZP_02022518.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
gi|162420218|ref|YP_001605761.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
Angola]
gi|165927555|ref|ZP_02223387.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937557|ref|ZP_02226120.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166012240|ref|ZP_02233138.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214174|ref|ZP_02240209.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401977|ref|ZP_02307460.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420574|ref|ZP_02312327.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425550|ref|ZP_02317303.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170022695|ref|YP_001719200.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|218930654|ref|YP_002348529.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
gi|229836787|ref|ZP_04456952.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
gi|229839313|ref|ZP_04459472.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899877|ref|ZP_04515018.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904188|ref|ZP_04519299.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
gi|270488627|ref|ZP_06205701.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|45438502|gb|AAS64048.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
str. 91001]
gi|115349265|emb|CAL22232.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
gi|145209263|gb|ABP38670.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|149289055|gb|EDM39135.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
gi|162353033|gb|ABX86981.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
gi|165914662|gb|EDR33276.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920449|gb|EDR37726.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165988859|gb|EDR41160.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204661|gb|EDR49141.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961380|gb|EDR57401.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048563|gb|EDR59971.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055564|gb|EDR65357.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749229|gb|ACA66747.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|229678306|gb|EEO74411.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
gi|229687369|gb|EEO79444.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695679|gb|EEO85726.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705730|gb|EEO91739.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
gi|270337131|gb|EFA47908.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|320017193|gb|ADW00765.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|260914143|ref|ZP_05920616.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325]
gi|260631776|gb|EEX49954.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325]
Length = 69
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ V D
Sbjct: 1 MEVGVVKWFNNAKGFGFISAEGSDA---DIFAHYSVIEMEGYRSLKAGQKVQFEVVHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|103487825|ref|YP_617386.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
alaskensis RB2256]
gi|98977902|gb|ABF54053.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
RB2256]
Length = 249
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFI + D F+H SAV AG+ L EG V +D +D GK
Sbjct: 183 GTVKFFNTTKGFGFIARDD---GQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDDR-GK 238
Query: 65 YSAENLKL 72
++A NL+
Sbjct: 239 FAAVNLQP 246
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++NP KG+GF+ + G+DVF+H SAV AGL L GQ + + V+ NG
Sbjct: 85 QGTVKFFNPSKGFGFVARDD---GGEDVFVHISAVEQAGLQGLASGQPLAFTLVE--RNG 139
Query: 64 KYSAENLKL 72
K SA +LK+
Sbjct: 140 KVSAIDLKI 148
>gi|16273340|ref|NP_439584.1| cold shock-like protein [Haemophilus influenzae Rd KW20]
gi|68250036|ref|YP_249148.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP]
gi|145630737|ref|ZP_01786515.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
gi|145632798|ref|ZP_01788531.1| cold shock-like protein CspD [Haemophilus influenzae 3655]
gi|145634990|ref|ZP_01790697.1| cold shock-like protein CspD [Haemophilus influenzae PittAA]
gi|145636144|ref|ZP_01791814.1| cold shock-like protein CspD [Haemophilus influenzae PittHH]
gi|145638951|ref|ZP_01794559.1| cold shock-like protein CspD [Haemophilus influenzae PittII]
gi|145641592|ref|ZP_01797169.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
gi|148825975|ref|YP_001290728.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
PittEE]
gi|148826935|ref|YP_001291688.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
PittGG]
gi|229844090|ref|ZP_04464231.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
6P18H1]
gi|229846710|ref|ZP_04466817.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
7P49H1]
gi|260580732|ref|ZP_05848558.1| cold shock domain-containing protein CspD [Haemophilus influenzae
RdAW]
gi|260583054|ref|ZP_05850836.1| cold shock domain-containing protein CspD [Haemophilus influenzae
NT127]
gi|1169113|sp|P46449|CSPD_HAEIN RecName: Full=Cold shock-like protein CspD
gi|1574273|gb|AAC23082.1| cold shock-like protein (cspD) [Haemophilus influenzae Rd KW20]
gi|68058235|gb|AAX88488.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP]
gi|144983619|gb|EDJ91079.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
gi|144986454|gb|EDJ93020.1| cold shock-like protein CspD [Haemophilus influenzae 3655]
gi|145267856|gb|EDK07853.1| cold shock-like protein CspD [Haemophilus influenzae PittAA]
gi|145270666|gb|EDK10599.1| cold shock-like protein CspD [Haemophilus influenzae PittHH]
gi|145271923|gb|EDK11832.1| cold shock-like protein CspD [Haemophilus influenzae PittII]
gi|145273639|gb|EDK13508.1| cold shock-like protein CspD [Haemophilus influenzae 22.4-21]
gi|148716135|gb|ABQ98345.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
PittEE]
gi|148718177|gb|ABQ99304.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
PittGG]
gi|229810199|gb|EEP45918.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
7P49H1]
gi|229813084|gb|EEP48772.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
6P18H1]
gi|260092549|gb|EEW76486.1| cold shock domain-containing protein CspD [Haemophilus influenzae
RdAW]
gi|260093905|gb|EEW77811.1| cold shock domain-containing protein CspD [Haemophilus influenzae
NT127]
gi|301170221|emb|CBW29825.1| cold shock protein homolog [Haemophilus influenzae 10810]
gi|309750920|gb|ADO80904.1| Cold shock protein CspD [Haemophilus influenzae R2866]
gi|309973115|gb|ADO96316.1| Cold shock protein CspD [Haemophilus influenzae R2846]
Length = 72
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + +D
Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|251792619|ref|YP_003007345.1| cold shock domain-containing protein CspD [Aggregatibacter
aphrophilus NJ8700]
gi|247534012|gb|ACS97258.1| cold shock domain protein CspD [Aggregatibacter aphrophilus
NJ8700]
Length = 69
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D
Sbjct: 1 MEVGVVKWFNNAKGFGFISVEGS---NTDIFAHYSVIEMEGYRSLKAGQKVQFEVIHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|254785982|ref|YP_003073411.1| cspA cold-shock DNA-binding domain-containing protein
[Teredinibacter turnerae T7901]
gi|237687500|gb|ACR14764.1| cspA cold-shock DNA-binding domain protein [Teredinibacter
turnerae T7901]
Length = 69
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KGYGFI+ E G D+F+H S + +G L EGQ VT+
Sbjct: 6 NGTVKWFNESKGYGFISRE----GGADLFVHFSNIIGSGFKTLKEGQAVTFTEGTGQKG- 60
Query: 64 KYSAENLKL 72
AEN++
Sbjct: 61 -PQAENVEP 68
>gi|15226451|ref|NP_179702.1| ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid
binding / zinc ion binding [Arabidopsis thaliana]
gi|17366505|sp|Q38896|GRP2B_ARATH RecName: Full=Glycine-rich protein 2b; Short=AtGRP2b
gi|1063684|gb|AAA91165.1| AtGRP2b [Arabidopsis thaliana]
gi|4803937|gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana]
gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18 [Arabidopsis thaliana]
gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis thaliana]
gi|330252023|gb|AEC07117.1| glycine-rich protein 2B [Arabidopsis thaliana]
Length = 201
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KG+GFITP GDD+F+H+S++ S G +L + V +D + D +G
Sbjct: 16 KGTVKWFDTQKGFGFITPSD---GGDDLFVHQSSIRSEGFRSLAAEESVEFDV-EVDNSG 71
Query: 64 KYSAENLK 71
+ A +
Sbjct: 72 RPKAIEVS 79
>gi|224370359|ref|YP_002604523.1| CspB2 [Desulfobacterium autotrophicum HRM2]
gi|223693076|gb|ACN16359.1| CspB2 [Desulfobacterium autotrophicum HRM2]
Length = 66
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E G DV++H + + S L++G V+++
Sbjct: 1 MAEGIVKWFNDSKGFGFIEQEN----GPDVYVHHTGINSTSFKPLSQGDRVSFEIENGQK 56
Query: 62 NGKYSAENLKLV 73
A N+ ++
Sbjct: 57 G--TVAVNVTVL 66
>gi|254514075|ref|ZP_05126136.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR5-3]
gi|219676318|gb|EED32683.1| putative 'Cold-shock' DNA-binding domain protein [gamma
proteobacterium NOR5-3]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFIT DVF+H ++ G L EG+ V + +
Sbjct: 7 GTVKWFNNAKGFGFIT---GESFDGDVFVHFRSIVGDGFRTLNEGEEVEFTLTEGPKG-- 61
Query: 65 YSAENLKLV 73
AE++ +
Sbjct: 62 LQAEDVAKI 70
>gi|269961818|ref|ZP_06176175.1| cold shock domain family protein [Vibrio harveyi 1DA3]
gi|269833396|gb|EEZ87498.1| cold shock domain family protein [Vibrio harveyi 1DA3]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G DVF+H +A+ + G L EGQ V+++
Sbjct: 6 TGSVKWFNETKGFGFLTQDN---GGQDVFVHFNAIVADGFKTLAEGQKVSFNVEDGKKG- 61
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 62 -PQATEVTPL 70
>gi|311897807|dbj|BAJ30215.1| putative cold shock protein [Kitasatospora setae KM-6054]
Length = 127
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGF++ + G +VF+H A+ AG+ L GQ V +
Sbjct: 1 MPTGQVKWFNETKGYGFLSRDD----GGEVFVHTKAL-PAGVTTLRPGQRVEFGVAAGHR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 56 GD--QAMSVQLLDALPS 70
>gi|296394697|ref|YP_003659581.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296181844|gb|ADG98750.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
44985]
Length = 68
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
+ G++KW+N +KG+GFI PE D+F+H + + + G L EGQ V ++
Sbjct: 1 MSLGTVKWFNEEKGFGFIAPED---GSKDLFVHFTGIVENGGFRTLHEGQRVQFEAEAGQ 57
Query: 61 ANGKYSAENLKLV 73
A ++ V
Sbjct: 58 RG--PQAVSVVAV 68
>gi|167755599|ref|ZP_02427726.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402]
gi|237734348|ref|ZP_04564829.1| cold shock protein cspC [Mollicutes bacterium D7]
gi|167704538|gb|EDS19117.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402]
gi|229382578|gb|EEO32669.1| cold shock protein cspC [Coprobacillus sp. D7]
Length = 65
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI G DVF+H S + G L EG+LV ++ Q+D
Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQITQDGYKTLNEGELVEFELYQSDRG- 56
Query: 64 KYSAENLKLV 73
A+++ +
Sbjct: 57 -MQAKHVVKI 65
>gi|227356923|ref|ZP_03841300.1| CspA family cold shock transcriptional regulator [Proteus
mirabilis ATCC 29906]
gi|227162921|gb|EEI47871.1| CspA family cold shock transcriptional regulator [Proteus
mirabilis ATCC 29906]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFITP DVF+H SA+ S L EGQ V++
Sbjct: 6 TGTVKWFDEGKGFGFITPAD---GSKDVFVHFSAIQSDSFKTLAEGQQVSFTMENGMKG- 61
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 62 -PAAGNVVAL 70
>gi|254428424|ref|ZP_05042131.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
gi|196194593|gb|EDX89552.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
Length = 62
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFI+ + G DVF+H SA+ +G L EGQ V+++ Q A
Sbjct: 2 KWFNESKGFGFISQDD---GGADVFVHFSAITGSGFKTLAEGQKVSFEIQQGPKG--PQA 56
Query: 68 ENL 70
N+
Sbjct: 57 ANV 59
>gi|317123896|ref|YP_004098008.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
gi|315587984|gb|ADU47281.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
43043]
Length = 131
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++++ DKG+GFI + G DVFLH +A+ G+ L +G V + V+
Sbjct: 1 MPTGKVRFFDADKGFGFIAEDD----GADVFLHANAL-PEGVTTLKKGTRVEFGIVEGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++++ + +
Sbjct: 56 G--AQALQVRVLDPAPS 70
>gi|323698523|ref|ZP_08110435.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. ND132]
gi|323458455|gb|EGB14320.1| cold-shock DNA-binding domain protein [Desulfovibrio
desulfuricans ND132]
Length = 76
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G + W+N KG+GFIT + G DVF+H + + G L G+ VT+ +
Sbjct: 1 MRHTGEVTWFNEQKGFGFITGDD----GRDVFVHYTEIVRDGFQTLEPGEKVTFTLADEE 56
Query: 61 ANGKYSAENLKLVPKS 76
K A +++ ++
Sbjct: 57 TGPK--AVEVRIQEEA 70
>gi|260889081|ref|ZP_05900344.1| conserved domain protein [Leptotrichia hofstadii F0254]
gi|260861141|gb|EEX75641.1| conserved domain protein [Leptotrichia hofstadii F0254]
Length = 75
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI+ E G+D FLH S + G + EG+ V++D +
Sbjct: 13 GKVKWFNDKKGFGFISGED----GNDYFLHFSKINKEGFKTVNEGEEVSFDVEEGPKG-- 66
Query: 65 YSAENL 70
A N+
Sbjct: 67 PQATNV 72
>gi|307825191|ref|ZP_07655411.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307733647|gb|EFO04504.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 70
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++KW+N KG+GFI E G DVF+H S ++S G +LT+GQ V ++ Q
Sbjct: 6 NTGTVKWFNASKGFGFIEQE----KGPDVFVHYSNISSTGFKSLTDGQKVKFNVSQGKKG 61
Query: 63 GKYSAENLKLV 73
AE+L ++
Sbjct: 62 --PQAEDLIVI 70
>gi|257463996|ref|ZP_05628381.1| cold-shock domain-contain protein [Fusobacterium sp. D12]
gi|317061518|ref|ZP_07926003.1| cold-shock protein [Fusobacterium sp. D12]
gi|313687194|gb|EFS24029.1| cold-shock protein [Fusobacterium sp. D12]
Length = 67
Score = 78.5 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GFIT E D F+H S +A G L EG+ VT++ +
Sbjct: 1 MLKGTVKWFNNEKGFGFITGEDMV----DYFVHFSGIAGEGFKTLEEGEAVTFEVSEGKK 56
Query: 62 NGKYSAENLKLVP 74
A + V
Sbjct: 57 G--PMATEVTKVK 67
>gi|325121612|gb|ADY81135.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2]
Length = 69
Score = 78.5 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + +G DVF H ++S+G L EGQ V+++ Q
Sbjct: 7 GTVKWFNETKGFGFIQQD----TGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60
Query: 65 YSAENL 70
+A N+
Sbjct: 61 LTATNI 66
>gi|315633923|ref|ZP_07889212.1| CspA family cold shock transcriptional regulator [Aggregatibacter
segnis ATCC 33393]
gi|315477173|gb|EFU67916.1| CspA family cold shock transcriptional regulator [Aggregatibacter
segnis ATCC 33393]
Length = 69
Score = 78.5 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI PE DVF+H S + L EG V ++ +
Sbjct: 5 NGTVKWFNSTKGFGFIAPED---GSKDVFVHFSGIVGNNFRTLNEGDRVAFNVQDSQRG- 60
Query: 64 KYSAENLKLV 73
+A +++++
Sbjct: 61 -PTAVDVEVI 69
>gi|153833621|ref|ZP_01986288.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01]
gi|156977630|ref|YP_001448536.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116]
gi|148870019|gb|EDL68974.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01]
gi|156529224|gb|ABU74309.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116]
Length = 70
Score = 78.5 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF+T + G DVF+H +A+ + G LTEGQ V+++
Sbjct: 6 TGSVKWFNETKGFGFLTQDN---GGQDVFVHFNAIVADGFKTLTEGQKVSFNVEDGKKG- 61
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 62 -PQATEVTPL 70
>gi|119469529|ref|ZP_01612433.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Alteromonadales bacterium
TW-7]
gi|119447064|gb|EAW28334.1| cold shock protein, transcription antiterminator, affects
expression of rpoS and uspA [Alteromonadales bacterium
TW-7]
Length = 67
Score = 78.5 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K++N KG+GFI E G DVF+H SA++ +G L+EGQ VT+ Q
Sbjct: 1 MSVSGKVKFFNEAKGFGFIEQEN----GPDVFVHFSAISGSGFRTLSEGQAVTFSIKQGQ 56
Query: 61 ANGKYSAENLK 71
AEN++
Sbjct: 57 KG--PEAENVE 65
>gi|300698107|ref|YP_003748768.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum CFBP2957]
gi|299074831|emb|CBJ54398.1| cold shock/stress protein, member of the Csp-family [Ralstonia
solanacearum CFBP2957]
Length = 67
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFITP+ G+D+F H S V G +L EGQ V++
Sbjct: 1 METGIVKWFNDSKGFGFITPD---AGGNDLFAHFSEVQGNGFKSLQEGQKVSFVSGVGQK 57
Query: 62 NGKYSAENLKLV 73
A + ++
Sbjct: 58 G--PVATKIAVI 67
>gi|325003077|ref|ZP_08124189.1| cold shock protein CspA [Pseudonocardia sp. P1]
Length = 309
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60
+ +G+++W++ ++G+GF+ PE DVF+H S + G L EGQ V ++ +ND
Sbjct: 1 MQQGTVRWFDAERGFGFLAPED---GSPDVFVHASEIVGGGGATVLREGQAVEFEIGEND 57
Query: 61 ANGKYSAENLKLVPKSS 77
A +++ ++
Sbjct: 58 RG--PQALRVRVTADAA 72
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+ WY+ DKG+GFI P+ +DVF+H A+ + GL L EG V ++ D
Sbjct: 162 VAWYDEDKGFGFINPDS---GDEDVFVHARAL-AEGLTWLMEGDRVAFEVASGDKG--PQ 215
Query: 67 AENLKLVPK 75
A ++ LV +
Sbjct: 216 ARDVHLVRE 224
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGF +P+ G D+F+H SA+ + G+ +TEGQ V + V +
Sbjct: 81 GTVNWYEPGKGYGFASPDD---GGADIFVHSSAIVTGGV--VTEGQRVAFLVVDGERG-- 133
Query: 65 YSAENLKLVPKSS 77
A ++ + +
Sbjct: 134 PQAGHVIPLGAGA 146
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + Y+ D+G+GFITP+ GDD+F H S V G L +G V + Q+D
Sbjct: 248 GVVARYDDDRGFGFITPD---AGGDDLFAHVSVVM--GSEPLQKGDRVRFAVRQSDRG-- 300
Query: 65 YSAENLKLV 73
A+ ++ +
Sbjct: 301 PQADRIERL 309
>gi|167753531|ref|ZP_02425658.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
17216]
gi|167658156|gb|EDS02286.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
17216]
Length = 66
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFIT E G +VF+H S + S L EGQ V ++
Sbjct: 2 TGQVKWFDSKKGYGFITRED----GKEVFVHFSGIVSDSFKTLNEGQKVAFELGNGAKG- 56
Query: 64 KYSAENLKLVP 74
A N+ ++
Sbjct: 57 -EQAINVTVIE 66
>gi|87122219|ref|ZP_01078102.1| cold-shock protein CspD [Marinomonas sp. MED121]
gi|86162539|gb|EAQ63821.1| cold-shock protein CspD [Marinomonas sp. MED121]
Length = 92
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H G++KW+N KGYGFI E +D+F+H S++ G L GQ V++
Sbjct: 1 MHHGTVKWFNNAKGYGFIVSESFE---EDLFIHYSSILIDGYKTLKAGQSVSFKTSPGKQ 57
Query: 62 NGKYSAENL 70
A ++
Sbjct: 58 G--LHAVDI 64
>gi|301321057|gb|ADK69700.1| cold-shock DNA-binding domain protein [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 69
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFIT + DVF++ S + G L +GQ VTY+ +
Sbjct: 1 MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYYSNINVNGYKTLEQGQKVTYELNKGIK 57
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 58 G--LEAFNVSI 66
>gi|317406021|gb|EFV86296.1| cold shock-like protein [Achromobacter xylosoxidans C54]
Length = 67
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI PE G D+F H S + G L E Q V+Y Q
Sbjct: 1 METGIVKWFNDAKGFGFIMPEN---GGKDLFAHFSEIVGDGHKALVENQRVSYVTAQGAK 57
Query: 62 NGKYSAENLK 71
A ++
Sbjct: 58 G--PHATQIR 65
>gi|296113754|ref|YP_003627692.1| cold shock-like protein [Moraxella catarrhalis RH4]
gi|295921448|gb|ADG61799.1| cold shock-like protein [Moraxella catarrhalis RH4]
gi|326562103|gb|EGE12431.1| cold shock-like protein [Moraxella catarrhalis 7169]
gi|326564532|gb|EGE14758.1| cold shock-like protein [Moraxella catarrhalis 46P47B1]
gi|326565716|gb|EGE15879.1| cold shock-like protein [Moraxella catarrhalis 12P80B1]
gi|326566284|gb|EGE16436.1| cold shock-like protein [Moraxella catarrhalis 103P14B1]
gi|326567064|gb|EGE17186.1| cold shock-like protein [Moraxella catarrhalis BC1]
gi|326568328|gb|EGE18408.1| cold shock-like protein [Moraxella catarrhalis BC7]
gi|326572229|gb|EGE22224.1| cold shock-like protein [Moraxella catarrhalis BC8]
gi|326574571|gb|EGE24511.1| cold shock-like protein [Moraxella catarrhalis O35E]
gi|326574827|gb|EGE24757.1| cold shock-like protein [Moraxella catarrhalis 101P30B1]
gi|326576151|gb|EGE26066.1| cold shock-like protein [Moraxella catarrhalis CO72]
Length = 70
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G DVF H SA+ +G L EGQ V + +
Sbjct: 7 GTVKWFNESKGFGFIAQDN---GGQDVFAHYSAITGSGFKTLAEGQKVAFILGEGKKG-- 61
Query: 65 YSAENLKLV 73
AE ++ V
Sbjct: 62 PQAEEIEKV 70
>gi|227355251|ref|ZP_03839653.1| CspA family cold shock transcriptional regulator [Proteus
mirabilis ATCC 29906]
gi|227164624|gb|EEI49491.1| CspA family cold shock transcriptional regulator [Proteus
mirabilis ATCC 29906]
Length = 66
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW++ KG+GFITP DVF+H SA+ S L EGQ V++
Sbjct: 2 TGTVKWFDEGKGFGFITPAD---GSKDVFVHFSAIQSDNFKTLAEGQQVSFTMENGMKG- 57
Query: 64 KYSAENLKLV 73
+A N+ +
Sbjct: 58 -PAAGNVVAL 66
>gi|319956775|ref|YP_004168038.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis
DSM 16511]
gi|319419179|gb|ADV46289.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis
DSM 16511]
Length = 72
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQND 60
H G++KW+N +KGYGFI + G+DVF+H V + G +L EGQ V+++ +
Sbjct: 5 HHGTVKWFNDEKGYGFIQQDN---GGNDVFVHFRQVNNPEGGRVSLYEGQKVSFEIGEGM 61
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 62 KG--PQAENVTPL 72
>gi|284029203|ref|YP_003379134.1| cold-shock DNA-binding domain-containing protein [Kribbella
flavida DSM 17836]
gi|283808496|gb|ADB30335.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
17836]
Length = 66
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++KW+N DKGYGF+ E DDVF+H S + S G L +GQ V ++ V
Sbjct: 1 MVRGTVKWFNADKGYGFLAVE----GQDDVFVHWSKIVSDGYKTLEDGQQVEFEVVDGPK 56
Query: 62 NGKYSAE 68
+ A
Sbjct: 57 GREADAV 63
>gi|71065101|ref|YP_263828.1| cold-shock DNA-binding protein family protein [Psychrobacter
arcticus 273-4]
gi|93005356|ref|YP_579793.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
cryohalolentis K5]
gi|71038086|gb|AAZ18394.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
273-4]
gi|92393034|gb|ABE74309.1| cold-shock DNA-binding protein family [Psychrobacter
cryohalolentis K5]
gi|118185010|gb|ABK76501.1| CspA-like protein [Psychrobacter sp. B6]
Length = 70
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ + D
Sbjct: 7 GTVKWFNEAKGFGFIAQDN---GGQDVFAHYSAIQGGGFKTLAEGQKVSF--ILGDGKKG 61
Query: 65 YSAENLKLV 73
AE ++ +
Sbjct: 62 PQAEQIEAI 70
>gi|89897618|ref|YP_521105.1| hypothetical protein DSY4872 [Desulfitobacterium hafniense Y51]
gi|219670745|ref|YP_002461180.1| cold-shock DNA-binding protein [Desulfitobacterium hafniense
DCB-2]
gi|89337066|dbj|BAE86661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541005|gb|ACL22744.1| cold-shock DNA-binding domain protein [Desulfitobacterium
hafniense DCB-2]
Length = 65
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KGYGFI + G D+F+H S++ G L EGQ V +D VQ
Sbjct: 3 GKVKWFSKQKGYGFIEGDH----GQDIFVHFSSIMGDGFRTLEEGQGVEFDIVQGPRGD- 57
Query: 65 YSAENLK 71
A N++
Sbjct: 58 -QASNVQ 63
>gi|295115086|emb|CBL35933.1| cold-shock DNA-binding protein family [butyrate-producing
bacterium SM4/1]
Length = 76
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++KW+N +G+GF+ E G + F+H S + G L EGQ VT++ +++
Sbjct: 1 MRVKGTVKWFNARRGFGFVCDED----GLEHFVHYSQIQMEGFKRLGEGQSVTFEIGEDE 56
Query: 61 ANGKYSAENLKLVPKSS 77
G+ A + ++
Sbjct: 57 K-GRSVALEVIPEEQAP 72
>gi|255525596|ref|ZP_05392530.1| cold-shock DNA-binding domain protein [Clostridium
carboxidivorans P7]
gi|296185483|ref|ZP_06853893.1| cold-shock DNA-binding domain protein [Clostridium
carboxidivorans P7]
gi|255510686|gb|EET86992.1| cold-shock DNA-binding domain protein [Clostridium
carboxidivorans P7]
gi|296050317|gb|EFG89741.1| cold-shock DNA-binding domain protein [Clostridium
carboxidivorans P7]
Length = 67
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ G +KW+N +KG+GFI+ E G DVF+H SA+ G +L+EGQ V YD ++
Sbjct: 1 MLTGVVKWFNDEKGFGFISGED----GTDVFVHYSAIKEEGKRKDLSEGQQVQYDVIETP 56
Query: 61 ANGKYSAENLKL 72
A N++
Sbjct: 57 KG--LQASNVQK 66
>gi|170746594|ref|YP_001752854.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170653116|gb|ACB22171.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 259
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KWY+P KG+GF++ G DVF+HRSA++ AGL +L EGQ VT V+ +
Sbjct: 195 GTVKWYDPAKGFGFVSVND---GGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGRE 251
Query: 65 YSAENLK 71
+ N++
Sbjct: 252 AQSINVE 258
Score = 60.4 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q
Sbjct: 70 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHDDLMPGTRLTVTTAQGQKG--P 124
Query: 66 SAENLKLVPKSS 77
++ V S+
Sbjct: 125 QVTSVTSVDTST 136
>gi|220920391|ref|YP_002495692.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219944997|gb|ACL55389.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 242
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KWY+P KG+GF++ + G DVF+HRSA+A AGL +L EGQ VT D V+ +
Sbjct: 178 GTVKWYDPAKGFGFVSVKD---GGKDVFVHRSALARAGLDSLAEGQQVTMDVVEGQKGRE 234
Query: 65 YSAENL 70
+ ++
Sbjct: 235 AQSISV 240
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q
Sbjct: 67 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHTDLLPGTRLTVQTAQGQKG--P 121
Query: 66 SAENLKLVPKSS 77
N+ V S+
Sbjct: 122 QVTNITSVDTST 133
>gi|156394304|ref|XP_001636766.1| predicted protein [Nematostella vectensis]
gi|156223872|gb|EDO44703.1| predicted protein [Nematostella vectensis]
Length = 671
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFIT + G+DVF+H+SA+ ++G +L EG+ V +D
Sbjct: 484 TGSVKWFNLIKGFGFITRDD---GGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGK 540
>gi|71278873|ref|YP_267468.1| cold shock DNA-binding domain-containing protein [Colwellia
psychrerythraea 34H]
gi|71144613|gb|AAZ25086.1| cold-shock DNA-binding domain family protein [Colwellia
psychrerythraea 34H]
Length = 68
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ +G +KW+N DKG+GFITPE D+F+H S + S G L +GQ V Y+ Q
Sbjct: 1 MSKGIVKWFNSDKGFGFITPED---GSKDLFVHHSEIQSGGEYATLADGQTVEYEVGQGQ 57
Query: 61 ANGKYSAENLKLV 73
A + V
Sbjct: 58 KG--PCANKVVAV 68
>gi|257469672|ref|ZP_05633764.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
gi|317063905|ref|ZP_07928390.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
gi|313689581|gb|EFS26416.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
Length = 65
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N DKG+GFIT E G +VF H S + G L E + V Y+ Q
Sbjct: 2 KGTVKWFNQDKGFGFITGED----GKEVFAHYSQIQKDGFKTLAENEEVVYEVTQGQKG- 56
Query: 64 KYSAENLK 71
A N+K
Sbjct: 57 -PQASNIK 63
>gi|332288226|ref|YP_004419078.1| stationary phase/starvation inducible regulatory protein CspD
[Gallibacterium anatis UMN179]
gi|330431122|gb|AEC16181.1| stationary phase/starvation inducible regulatory protein CspD
[Gallibacterium anatis UMN179]
Length = 69
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ V D
Sbjct: 1 MEIGVVKWFNNAKGFGFISVEGHEG---DIFAHYSVIEMDGYRSLKAGQKVQFEAVHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|254786003|ref|YP_003073432.1| cold-shock DNA-binding domain-containing protein [Teredinibacter
turnerae T7901]
gi|237684504|gb|ACR11768.1| cold-shock DNA-binding domain protein [Teredinibacter turnerae
T7901]
Length = 72
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPD--KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +GYGFIT E +D+F+H + G +LTEGQ V ++ + +
Sbjct: 7 GTVKWFNNASARGYGFITR---GEESEDIFVHYRNIRGEGYRSLTEGQKVEFELQKGEKG 63
Query: 63 GKYSAENLKLV 73
AE++ V
Sbjct: 64 --LQAEDVSAV 72
>gi|167855568|ref|ZP_02478329.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
parasuis 29755]
gi|219870615|ref|YP_002474990.1| cold shock-like protein CspD [Haemophilus parasuis SH0165]
gi|167853314|gb|EDS24567.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
parasuis 29755]
gi|219690819|gb|ACL32042.1| cold shock-like protein CspD [Haemophilus parasuis SH0165]
Length = 69
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFIT + D+F H S + G +L GQ V +++ D
Sbjct: 1 MEVGIVKWFNNAKGFGFITSDSYEG---DIFAHFSVIEGEGYRSLKMGQKVHFEFTHGDK 57
Query: 62 NGKYSAENLKLVP 74
A +++VP
Sbjct: 58 G----ASAVRIVP 66
>gi|91083993|ref|XP_975245.1| PREDICTED: similar to AGAP006591-PA [Tribolium castaneum]
Length = 195
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW+N KG+GFITP+ G DVF+H+S + +G +L + + V ++ +D
Sbjct: 41 RGKCKWFNVAKGWGFITPDD---GGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSDKG 96
>gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326954082|gb|AEA27779.1| cold-shock DNA-binding domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 156
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ DKG+GF+ + G+DV++ +SA+ G+ +L GQ V + +
Sbjct: 30 PTGRVKWYDADKGFGFLAQD----GGEDVYVRKSAL-PTGVESLKSGQRVEFGMAEGRRG 84
Query: 63 GKYSAENLKLVPKSSN 78
A ++LV +
Sbjct: 85 --PQALQVRLVDAPPS 98
>gi|285017922|ref|YP_003375633.1| cold shock protein [Xanthomonas albilineans GPE PC73]
gi|283473140|emb|CBA15646.1| probable cold shock protein [Xanthomonas albilineans]
Length = 73
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI+ +G+DVF+H A+ + G +L EGQ V++ VQ
Sbjct: 11 GLVKWFNDAKGFGFISR----TNGEDVFVHFRAIQTQGFKSLKEGQKVSFIVVQGQKG-- 64
Query: 65 YSAENLKLV 73
A+ ++ V
Sbjct: 65 LQADAVQPV 73
>gi|169347342|ref|ZP_02866280.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM
1552]
gi|169293959|gb|EDS76092.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM
1552]
Length = 65
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N +KG+GFI G DVF+H S + G L EG+LV +D Q++
Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIEQDGYKTLNEGELVEFDLYQSERG- 56
Query: 64 KYSAENLKLV 73
A+++ +
Sbjct: 57 -MQAKHVVKI 65
>gi|300787569|ref|YP_003767860.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
gi|299797083|gb|ADJ47458.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
Length = 315
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ +G+++W++ ++G+GF+ PE + DVF+H S + G L EGQ V ++ +ND
Sbjct: 1 MPQGTVRWFDAERGFGFLAPEDDS---PDVFVHASEIVGDGGAKVLREGQAVVFEVGEND 57
Query: 61 ANGKYSAENLKLVPKSS 77
A +++ ++
Sbjct: 58 RG--PQALRVRVTADAA 72
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++ WY+ DKG+GFI P+ DVF+H A+ + GL L EG V Y+ D
Sbjct: 161 TVAWYDEDKGFGFINPDS---GAGDVFVHARAL-AEGLTWLAEGDRVAYEVASGDKG--P 214
Query: 66 SAENLKLVPKS 76
A ++ LV +
Sbjct: 215 QARDVHLVRGA 225
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+I WY P KGYGF +P+G G D+F+H SA+ + G+ +TEGQ V + V+ +
Sbjct: 81 GTINWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGV--VTEGQRVAFLIVEGERG-- 133
Query: 65 YSAENL 70
A ++
Sbjct: 134 PQAGHV 139
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + Y+ D+G+GFITP+ GDD+F H S + G L +G V Y Q+D
Sbjct: 254 GVVARYDGDRGFGFITPD---AGGDDLFAHASVIM--GSEPLQKGDRVRYAVRQSDRG-- 306
Query: 65 YSAENLKLV 73
A+ ++ +
Sbjct: 307 PQADRIERL 315
>gi|117925208|ref|YP_865825.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
MC-1]
gi|117608964|gb|ABK44419.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
Length = 70
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N DKG+GF+ + DVF+H SA++ G +L EGQ V + V
Sbjct: 4 RETGTVKWFNDDKGFGFVARDNDKG---DVFVHHSAISGTGFKSLKEGQRVEFAVVDGRK 60
Query: 62 NG 63
Sbjct: 61 GP 62
>gi|254227848|ref|ZP_04921279.1| conserved domain protein [Vibrio sp. Ex25]
gi|262395888|ref|YP_003287741.1| cold shock protein CspA [Vibrio sp. Ex25]
gi|151939890|gb|EDN58717.1| conserved domain protein [Vibrio sp. Ex25]
gi|262339482|gb|ACY53276.1| cold shock protein CspA [Vibrio sp. Ex25]
Length = 69
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF++ + G DVF+H +A+ S G LTEGQ V+++ Q
Sbjct: 5 NGSVKWFNETKGFGFLSQDN---GGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQGKKG- 60
Query: 64 KYSAENLKLV 73
A + +
Sbjct: 61 -PQATEVTPL 69
>gi|71278479|ref|YP_267487.1| cold shock DNA-binding domain-containing protein [Colwellia
psychrerythraea 34H]
gi|71144219|gb|AAZ24692.1| cold-shock DNA-binding domain family protein [Colwellia
psychrerythraea 34H]
Length = 69
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GFI E G DVF+H SA++ G L +GQ VT+ Q
Sbjct: 6 TGKVKFFNETKGFGFIEQEN----GPDVFVHFSAISGDGFRTLADGQAVTFTVKQGQKG- 60
Query: 64 KYSAENL 70
AEN+
Sbjct: 61 -PEAENV 66
>gi|313681671|ref|YP_004059409.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM
16994]
gi|313154531|gb|ADR33209.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM
16994]
Length = 72
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFI + G DVF+H + S G +L EGQ VTY Q +
Sbjct: 6 NGTVKWFNSEKGFGFIQQDN---GGKDVFVHFRQINSTGYGRVSLDEGQKVTYTVGQGEK 62
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 63 G--PQAENVTAL 72
>gi|262276771|ref|ZP_06054564.1| conserved domain protein [alpha proteobacterium HIMB114]
gi|262223874|gb|EEY74333.1| conserved domain protein [alpha proteobacterium HIMB114]
Length = 68
Score = 78.2 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N KGYGFI E DVF+H SAV +G+ L EG +T++ +
Sbjct: 1 MSIKGKVKWFNGTKGYGFIEREDKE---KDVFVHMSAVKDSGVGYLDEGDSLTFEIEEGK 57
Query: 61 ANGKYSAENLKL 72
SA NLK
Sbjct: 58 KG--PSAVNLKK 67
>gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus opacus B4]
gi|226242930|dbj|BAH53278.1| cold shock protein [Rhodococcus opacus B4]
Length = 139
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V +
Sbjct: 5 PTGKVKWYDVEKGFGFLSQE----EGEDVYVRSSAL-PEGVEGLKAGQRVEFGMAAGRRG 59
Query: 63 GKYSAENLKLVPKSSN 78
A +LK++ + +
Sbjct: 60 --PQALSLKVLDPAPS 73
>gi|219125932|ref|XP_002183223.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405498|gb|EEC45441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 91
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +KW++ KG+GFI P+ DVF+H++A+ + G +L +G+ V Y V+ D+N
Sbjct: 6 QKGVVKWFDTMKGFGFIMPDD---GSTDVFVHQTAIQTEGFRSLADGEAVEY-VVEEDSN 61
Query: 63 GKYSAENLK 71
G+ A +
Sbjct: 62 GRKKAVQVT 70
>gi|330812228|ref|YP_004356690.1| transcriptional regulator, Csd family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327380336|gb|AEA71686.1| putative transcriptional regulator, Csd family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 70
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KGYGFIT + G+++F+H SA+A G L + Q V+++ +
Sbjct: 6 KGTVKWFNDAKGYGFIT---CGKGGEELFVHYSAIAGEGYKTLKQRQTVSFEVEKGGKG- 61
Query: 64 KYSAENLKL 72
A +
Sbjct: 62 -MQAAKVTP 69
>gi|329123451|ref|ZP_08252015.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116]
gi|327471033|gb|EGF16488.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116]
Length = 72
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + D
Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKVGQKVQFEVLHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|254459315|ref|ZP_05072736.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
bacterium GD 1]
gi|207083928|gb|EDZ61219.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
bacterium GD 1]
Length = 72
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFI E G DVF+H V S G +L EGQ VT++ + +
Sbjct: 6 NGTVKWFNSEKGFGFIEQEN---GGKDVFVHFRQVNSNGYDRVSLNEGQKVTFEIGEGEK 62
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 63 G--PQAENVTGL 72
>gi|199598150|ref|ZP_03211572.1| Cold shock protein [Lactobacillus rhamnosus HN001]
gi|258508287|ref|YP_003171038.1| cold shock protein [Lactobacillus rhamnosus GG]
gi|258539501|ref|YP_003174000.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
gi|199590911|gb|EDY98995.1| Cold shock protein [Lactobacillus rhamnosus HN001]
gi|257148214|emb|CAR87187.1| Cold shock protein [Lactobacillus rhamnosus GG]
gi|257151177|emb|CAR90149.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
gi|259649604|dbj|BAI41766.1| cold shock protein [Lactobacillus rhamnosus GG]
Length = 74
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N DKGYGFI E D+F+H SA+ +G +LT G+ V + V+
Sbjct: 2 QGRVKNFNVDKGYGFIEAE----GQPDIFVHFSAINESGFKSLTPGEQVDFVIVEGPRG- 56
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 57 -PQAANVTI 64
>gi|331703045|ref|YP_004399732.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str.
95010]
gi|256383681|gb|ACU78251.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256384512|gb|ACU79081.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296456011|gb|ADH22246.1| cold-shock DNA-binding domain, putative [synthetic Mycoplasma
mycoides JCVI-syn1.0]
gi|328801600|emb|CBW53753.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 69
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFIT + DVF++ S + G L +GQ VTY+ +
Sbjct: 1 MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYFSNINVNGYKTLEQGQKVTYELNKGIK 57
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 58 G--LEAFNVSI 66
>gi|297613721|gb|ADI48290.1| cold-shock protein [Lactococcus piscium]
Length = 54
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ +G++KW+N +KG+GFIT G DVF+H SA+ + G L EGQ V YD
Sbjct: 1 MAQGTVKWFNAEKGFGFITGAD----GKDVFVHFSAIQTDGFKTLEEGQAVNYDVEDG 54
>gi|296271245|ref|YP_003653877.1| cold-shock DNA-binding domain-containing protein [Thermobispora
bispora DSM 43833]
gi|296094032|gb|ADG89984.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
43833]
Length = 131
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+T + G +VF+H S + G+ L GQ V + ++
Sbjct: 1 MPSGKVKWYDAEKGFGFLTRDD----GGEVFVHSSVLPK-GVTALKPGQKVEFGIAESRR 55
Query: 62 NGKYSAENLKLVPKSS 77
A +++++ +
Sbjct: 56 G--QQALSVRIIEPPT 69
>gi|149908141|ref|ZP_01896805.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
gi|149808683|gb|EDM68616.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
Length = 69
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K++N KG+GFI E G DVF+H S++ G LT+GQ V + Q
Sbjct: 7 GKVKFFNEAKGFGFIEQEN----GPDVFVHFSSILVDGFKVLTDGQKVEFTVGQGQKG-- 60
Query: 65 YSAENLKLV 73
AEN+K +
Sbjct: 61 PQAENVKPL 69
>gi|330877987|gb|EGH12136.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 73
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D
Sbjct: 6 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVGFSVMNRDKG- 60
Query: 64 KYSAENL 70
AE++
Sbjct: 61 -LQAEDV 66
>gi|170022693|ref|YP_001719198.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|169749227|gb|ACA66745.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
Length = 70
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAAVNV 67
>gi|160947736|ref|ZP_02094903.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270]
gi|158446870|gb|EDP23865.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270]
Length = 66
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
+G++KW+N KG+GFI+ E G+DVF+H SA+ G L EGQ V ++ V+
Sbjct: 2 KGTVKWFNAAKGFGFISTED----GEDVFVHYSALEETGEFRTLDEGQAVEFEIVEGAKG 57
Query: 63 GKYSAENLKLV 73
A + +
Sbjct: 58 --PQASGVVKL 66
>gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594]
gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594]
Length = 253
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFI EG G+DVF+H SAV AGL L EGQ + ++ V D G
Sbjct: 98 KGTVKFFNGQKGFGFIQQEG---GGEDVFVHISAVERAGLDGLAEGQELEFNLV--DRGG 152
Query: 64 KYSAENLKLV 73
K SA++L++V
Sbjct: 153 KVSAQDLQVV 162
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GF+ + D F+H SAV +GL + EG+ +D + D
Sbjct: 185 ATGTVKFFNSMKGFGFLVRDD---GQPDAFVHISAVERSGLSGIDEGERYEFDL-EVDRR 240
Query: 63 GKYSAENLKLVPK 75
GKYSA NL V +
Sbjct: 241 GKYSAVNLVPVQE 253
>gi|50085086|ref|YP_046596.1| cold shock-like protein [Acinetobacter sp. ADP1]
gi|49531062|emb|CAG68774.1| cold shock-like protein [Acinetobacter sp. ADP1]
Length = 69
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI + SG DVF H +AS+G L EGQ V++ V
Sbjct: 6 NGTVKWFNEVKGFGFIQQD----SGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG- 60
Query: 64 KYSAENL 70
SA N+
Sbjct: 61 -PSAVNI 66
>gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-containing protein [Streptomyces
sp. AA4]
gi|302439447|gb|EFL11263.1| cold-shock DNA-binding domain-containing protein [Streptomyces
sp. AA4]
Length = 139
Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ +KG+GF+T + G DV++ ++A+ G+ L GQ + +
Sbjct: 13 PTGKVKWYDAEKGFGFVTQD----GGADVYIRKAALPH-GVEGLKAGQRLEFGVADGRRG 67
Query: 63 GKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 68 --PQALSVRLLDPPPS 81
>gi|27377231|ref|NP_768760.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27350374|dbj|BAC47385.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 68
Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KGYGFI P+ DVF+H +V AG +L EG ++++ + +
Sbjct: 1 MATGIVKWFSATKGYGFIKPDDGEA---DVFVHIRSVEKAGYTSLAEGARISFE-RKTGS 56
Query: 62 NGKYSAENLKL 72
+GK SA+NL++
Sbjct: 57 SGKVSADNLRI 67
>gi|255020707|ref|ZP_05292768.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756]
gi|254969861|gb|EET27362.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756]
Length = 62
Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFITPE +DVF+H SA+ G L EG+ V+++ + A
Sbjct: 2 KWFNDSKGFGFITPED---GKEDVFVHHSAIEGTGFKTLAEGERVSFEVTRGPKG--LQA 56
Query: 68 ENLK 71
E ++
Sbjct: 57 EKVR 60
>gi|51597876|ref|YP_072067.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
32953]
gi|51597877|ref|YP_072068.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
32953]
gi|153949918|ref|YP_001399369.1| cold shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis IP 31758]
gi|170022694|ref|YP_001719199.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186897072|ref|YP_001874184.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|186897073|ref|YP_001874185.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51591158|emb|CAH22823.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
32953]
gi|51591159|emb|CAH22824.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
32953]
gi|152961413|gb|ABS48874.1| cold shock DNA-binding domain protein [Yersinia
pseudotuberculosis IP 31758]
gi|169749228|gb|ACA66746.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186700098|gb|ACC90727.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|186700099|gb|ACC90728.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
Length = 70
Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAVNV 67
>gi|322831731|ref|YP_004211758.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|321166932|gb|ADW72631.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
Length = 70
Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQSNDFKTLDEGQNVEFTIENGQKG- 61
Query: 64 KYSAENLKLV 73
SA N+ ++
Sbjct: 62 -PSAGNVVVL 70
>gi|253581950|ref|ZP_04859174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
gi|251836299|gb|EES64836.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
Length = 65
Score = 77.8 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N DKG+GFIT E G +VF H S + G L E + V Y+ Q
Sbjct: 2 KGTVKWFNQDKGFGFITGED----GKEVFAHYSQIQKDGFKTLEENEEVIYEVTQGQKG- 56
Query: 64 KYSAENLK 71
A N+K
Sbjct: 57 -PQASNIK 63
>gi|294676164|ref|YP_003576779.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
gi|294474984|gb|ADE84372.1| cold shock protein CspA-1 [Rhodobacter capsulatus SB 1003]
Length = 68
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N +KG+GFI PEG DVF+H SAV AG+ L +G VT+ ++
Sbjct: 1 MANGTVKFFNQNKGFGFIEPEG---GAQDVFVHISAVERAGISRLVDGAKVTFQI-ESGR 56
Query: 62 NGKYSAENLKLV 73
+G+ SA +L LV
Sbjct: 57 DGRKSACDLALV 68
>gi|167041377|gb|ABZ06130.1| putative cold-shock DNA-binding domain protein [uncultured marine
microorganism HF4000_005K23]
Length = 445
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KGYGFI EG D+F+H SAV +AGL L EG+ +T++ ++
Sbjct: 368 NGEVKWFNGAKGYGFIKREGEE---KDIFVHSSAVQNAGLKYLKEGEQLTFEVEYSNKG- 423
Query: 64 KYSAENLKL 72
SA NL+
Sbjct: 424 -PSAINLQK 431
>gi|296283311|ref|ZP_06861309.1| cold shock protein [Citromicrobium bathyomarinum JL354]
Length = 70
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKG+GFI P+ D F+H +AV +AG+ L + Q + Y+ Q
Sbjct: 1 MAKTGTVKFFNSDKGFGFIQPDD---GSADSFVHITAVQAAGMQGLDKDQRLNYEVEQG- 56
Query: 61 ANGKYSAENLK 71
NGK SA NL
Sbjct: 57 RNGKESAVNLS 67
>gi|321468514|gb|EFX79498.1| hypothetical protein DAPPUDRAFT_52316 [Daphnia pulex]
Length = 147
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G KW+N KG+GFITP+ DVF+H+S + G NL EG+ V + D
Sbjct: 1 GRCKWFNVTKGWGFITPDD---GSPDVFVHQSVIRMNGFRNLAEGEEVEMETKDADKG-- 55
Query: 65 YSAENLK 71
A +
Sbjct: 56 AEATVVT 62
>gi|119025588|ref|YP_909433.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703]
gi|154487048|ref|ZP_02028455.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis
L2-32]
gi|118765172|dbj|BAF39351.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703]
gi|154084911|gb|EDN83956.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis
L2-32]
Length = 130
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ +KGYGFI + ES DDVFL +A+ G+ L +G V Y +
Sbjct: 1 MPSGRVRWFDANKGYGFIQ---TGESTDDVFLPAAAL-PEGVKTLRKGAKVEYSVIDGRR 56
Query: 62 NGKYSAENLKLVPKSSN 78
A + LV + +
Sbjct: 57 G--PQAMGVTLVASAPS 71
>gi|323339484|ref|ZP_08079763.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644]
gi|323093098|gb|EFZ35691.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644]
Length = 69
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ +++ KGYGFITP+ E +DVF+H SA+ +G L EGQ V + V+
Sbjct: 1 MLKGTVHFFDKKKGYGFITPD---EGNEDVFVHFSALVGSGFKTLEEGQRVEFCEVEGKK 57
Query: 62 NGKYSAENLKLV 73
+ + A + ++
Sbjct: 58 S--FQAAMVTVI 67
>gi|325295337|ref|YP_004281851.1| cold-shock DNA-binding domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065785|gb|ADY73792.1| cold-shock DNA-binding domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 68
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ + G++KW++ KGYGFIT + G DVF+H + +A G L EG+ V+++ ++
Sbjct: 1 MEKLVGTVKWFDSKKGYGFITADN----GQDVFVHYTGIAGTGFRTLEEGERVSFNITES 56
Query: 60 DANGKYSAENLKLV 73
+ A +++ V
Sbjct: 57 NKG--LKAVDVERV 68
>gi|268315694|ref|YP_003289413.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
marinus DSM 4252]
gi|262333228|gb|ACY47025.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
4252]
Length = 76
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQN 59
M RG +KW+N DKGYGFI P DVF+HR+ V G L EG+ V+Y+ +
Sbjct: 1 MAQRGRVKWFNIDKGYGFIEPND---GSKDVFVHRNNVPGLGWDEGLREGEEVSYEVERT 57
Query: 60 DANGKYSAENLKLVPKSSN 78
SA N++ + +SS
Sbjct: 58 PKG--LSAMNVERLSRSSE 74
>gi|152992263|ref|YP_001357984.1| cold shock protein [Sulfurovum sp. NBC37-1]
gi|151424124|dbj|BAF71627.1| cold shock protein [Sulfurovum sp. NBC37-1]
Length = 72
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KGYGFI E G DVF+H V + G L EGQ VT++ +
Sbjct: 6 NGTVKWFNDEKGYGFIQQEN---GGSDVFVHFRQVNNDNGGRVTLAEGQAVTFEIGEGQK 62
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 63 G--PQAENVTPL 72
>gi|238756793|ref|ZP_04618027.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
gi|238704988|gb|EEP97471.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
Length = 75
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V + +N A G
Sbjct: 11 TGLVKWFDAGKGFGFITPTD---GSKDVFVHFSAIQSNDFKTLDEGQSVEFSI-ENGAKG 66
Query: 64 KYSAENLKL 72
+A + +
Sbjct: 67 PSAANVVAV 75
>gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
gi|311225330|gb|ADP78185.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
Length = 131
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF++ + G DVF+H++A+ AG+ L G V +
Sbjct: 1 MPTGKVKWYDVDKGFGFLSRDD----GGDVFVHKAAL-PAGVEKLRAGDRVEFGVAAGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ + +
Sbjct: 56 GD--QALSLRILAEPPS 70
>gi|254429192|ref|ZP_05042899.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881]
gi|196195361|gb|EDX90320.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881]
Length = 202
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG +KW+NP+KG+GFI + SG+++F+H AV + G +L G V +D +D
Sbjct: 137 QRGEVKWFNPNKGFGFILTD----SGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRG 192
Query: 63 GKYSAENL 70
A+N+
Sbjct: 193 --EQADNV 198
>gi|228924740|ref|ZP_04087911.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228834917|gb|EEM80385.1| Cold shock protein cspB [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 64
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
+ +G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D
Sbjct: 1 MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQAVTFDLE 52
>gi|253581358|ref|ZP_04858584.1| cold-shock protein [Fusobacterium varium ATCC 27725]
gi|257470862|ref|ZP_05634952.1| cold-shock DNA-binding protein family protein [Fusobacterium
ulcerans ATCC 49185]
gi|317065065|ref|ZP_07929550.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185]
gi|251836722|gb|EES65256.1| cold-shock protein [Fusobacterium varium ATCC 27725]
gi|313690741|gb|EFS27576.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185]
Length = 66
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +KG+GF+T E G D F+H + + G L EGQ VT++ +
Sbjct: 1 MLKGTVKWFNKEKGFGFLTSED----GADYFVHFTGIVGEGFRTLEEGQEVTFEVSEGKK 56
Query: 62 NGKYSAENLK 71
A +
Sbjct: 57 G--PMAVEVS 64
>gi|312883792|ref|ZP_07743511.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368541|gb|EFP96074.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 69
Score = 77.4 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI+ E S DD+F+H + G L EG V++ +
Sbjct: 7 GTVKWFNETKGFGFISQENS----DDLFVHFRNILGDGFKKLVEGDKVSFTVGRGPKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTTI 69
>gi|328952681|ref|YP_004370015.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328453005|gb|AEB08834.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 67
Score = 77.4 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +RG +K++N KG+GFI + G +VF+H S + S G L E + V ++ +
Sbjct: 1 MKYRGKVKFFNESKGWGFIKQDD----GPEVFVHYSNIQSKGFRTLKENEEVEFELSEGA 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--PQAINVVKL 67
>gi|311107231|ref|YP_003980084.1| cold shock protein CapA [Achromobacter xylosoxidans A8]
gi|310761920|gb|ADP17369.1| cold shock protein CapA [Achromobacter xylosoxidans A8]
Length = 69
Score = 77.4 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N DKG+GFI PE G D+F H S + G +L E Q V++ Q
Sbjct: 4 ETGIVKWFNNDKGFGFIMPE---LGGKDLFAHFSEIQGDGHKSLEENQRVSFVAGQGQKG 60
Query: 63 GKYSAENLKLV 73
+A +K +
Sbjct: 61 --PTATMIKPI 69
>gi|327335065|gb|EGE76776.1| cold-shock domain protein [Propionibacterium acnes HL097PA1]
Length = 135
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ ++
Sbjct: 64 G--EQALSLQIIETPAS 78
>gi|297836502|ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
lyrata]
gi|297331973|gb|EFH62392.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
lyrata]
Length = 299
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + W+ KGYGFITP+ G+++F+H+S++ S G +LT G+ V Y +GK
Sbjct: 11 GKVNWFGDGKGYGFITPDD---GGEELFVHQSSIVSDGYRSLTVGESVEYSITLGS-DGK 66
Query: 65 YSAENLK 71
A N+
Sbjct: 67 TKAVNVT 73
>gi|114797581|ref|YP_759686.1| cold shock protein [Hyphomonas neptunium ATCC 15444]
gi|114737755|gb|ABI75880.1| cold shock protein [Hyphomonas neptunium ATCC 15444]
Length = 69
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFI+P G+DVF+H S + +G+ +L EGQ V++D +
Sbjct: 1 MTNGIVKFFNSQKGFGFISPTN---GGNDVFVHISTLERSGIAHLNEGQKVSFDTAIDKR 57
Query: 62 NGKYSAENLKL 72
+GK + ++L
Sbjct: 58 SGKSAVSAIEL 68
>gi|251771202|gb|EES51783.1| putative cold-shock DNA-binding domain protein [Leptospirillum
ferrodiazotrophum]
Length = 320
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K YNPDKGYG I + G ++F+H SA+ + GL L GQ V ++
Sbjct: 1 MPKGRVKAYNPDKGYGTILLDD----GQEIFVHGSAIQTDGLKVLEAGQRVRFEIAMGPQ 56
Query: 62 NGKYSAENLKLVPKSS 77
A N++ +
Sbjct: 57 G--PLAANVRRMADGP 70
>gi|91226275|ref|ZP_01261115.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus
12G01]
gi|91189286|gb|EAS75565.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus
12G01]
Length = 69
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI S ++GDD+F+H ++ G L EG V++ +
Sbjct: 7 GTVKWFNETKGFGFI----SQQNGDDLFVHFRSILGDGFKKLVEGDKVSFTVGKGPKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTTI 69
>gi|313765415|gb|EFS36779.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL013PA1]
gi|313772599|gb|EFS38565.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL074PA1]
gi|313792938|gb|EFS41005.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL110PA1]
gi|313806623|gb|EFS45130.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL087PA2]
gi|313810820|gb|EFS48534.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL083PA1]
gi|313814335|gb|EFS52049.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL025PA1]
gi|313815182|gb|EFS52896.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL059PA1]
gi|313817166|gb|EFS54880.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL046PA2]
gi|313821769|gb|EFS59483.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL036PA1]
gi|313824339|gb|EFS62053.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL036PA2]
gi|313826698|gb|EFS64412.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL063PA1]
gi|313828486|gb|EFS66200.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL063PA2]
gi|313831939|gb|EFS69653.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL007PA1]
gi|313834520|gb|EFS72234.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL056PA1]
gi|313840249|gb|EFS77963.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL086PA1]
gi|314915942|gb|EFS79773.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL005PA4]
gi|314916971|gb|EFS80802.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL050PA1]
gi|314921491|gb|EFS85322.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL050PA3]
gi|314926877|gb|EFS90708.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL036PA3]
gi|314931185|gb|EFS95016.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL067PA1]
gi|314954756|gb|EFS99162.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL027PA1]
gi|314958923|gb|EFT03025.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL002PA1]
gi|314961218|gb|EFT05319.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL002PA2]
gi|314964355|gb|EFT08455.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL082PA1]
gi|314969454|gb|EFT13552.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL037PA1]
gi|314974521|gb|EFT18616.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL053PA1]
gi|314977286|gb|EFT21381.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL045PA1]
gi|314980557|gb|EFT24651.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL072PA2]
gi|314985613|gb|EFT29705.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL005PA1]
gi|314987570|gb|EFT31661.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL005PA2]
gi|314988965|gb|EFT33056.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL005PA3]
gi|315078631|gb|EFT50662.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL053PA2]
gi|315081909|gb|EFT53885.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL078PA1]
gi|315082596|gb|EFT54572.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL027PA2]
gi|315086307|gb|EFT58283.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL002PA3]
gi|315087557|gb|EFT59533.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL072PA1]
gi|315097592|gb|EFT69568.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL038PA1]
gi|315099808|gb|EFT71784.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL059PA2]
gi|315101884|gb|EFT73860.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL046PA1]
gi|315106608|gb|EFT78584.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL030PA1]
gi|315110397|gb|EFT82373.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL030PA2]
gi|327331557|gb|EGE73296.1| cold-shock domain protein [Propionibacterium acnes HL096PA2]
gi|327333540|gb|EGE75260.1| cold-shock domain protein [Propionibacterium acnes HL096PA3]
gi|327445435|gb|EGE92089.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL013PA2]
gi|327447049|gb|EGE93703.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL043PA1]
gi|327449915|gb|EGE96569.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL043PA2]
gi|327454759|gb|EGF01414.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL087PA3]
gi|327455614|gb|EGF02269.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL083PA2]
gi|327456893|gb|EGF03548.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL092PA1]
gi|328755815|gb|EGF69431.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL087PA1]
gi|328756595|gb|EGF70211.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL025PA2]
gi|328758679|gb|EGF72295.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL020PA1]
gi|328761686|gb|EGF75201.1| cold-shock domain protein [Propionibacterium acnes HL099PA1]
Length = 135
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ ++
Sbjct: 64 G--EQALSLQIIETPAS 78
>gi|33591645|ref|NP_879289.1| cold shock protein [Bordetella pertussis Tohama I]
gi|33571288|emb|CAE44757.1| cold shock protein [Bordetella pertussis Tohama I]
gi|332381065|gb|AEE65912.1| cold shock protein [Bordetella pertussis CS]
Length = 67
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI PE G D+F H S + G L E Q V+Y
Sbjct: 1 MQTGIVKWFNDEKGFGFIMPEN---GGPDLFAHYSEIQGEGHKVLVEQQRVSYVPGHGPK 57
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 58 G--PMATKITPL 67
>gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S]
gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S]
Length = 272
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++K++N KG+GFI + D F+H SAV AG+ L EG + ++ + D
Sbjct: 203 RASGTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGMSALNEGDRLDFEL-EVDR 258
Query: 62 NGKYSAENLK 71
GKY+A NL+
Sbjct: 259 RGKYAAVNLQ 268
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GFI + G+DVF+H SAV AGL L EGQ + + V D G
Sbjct: 101 TGVVKFFNGQKGFGFIVRDD---GGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGG 155
Query: 64 KYSAENLKL 72
K SA +LK+
Sbjct: 156 KVSATDLKI 164
>gi|330683909|gb|EGG95678.1| cold shock protein CspD [Staphylococcus epidermidis VCU121]
Length = 58
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW+N DKG+GFI +G+DVF+H S +A G +L EGQ V +D ++
Sbjct: 1 MNNGTVKWFNADKGFGFIER----GNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIIEGQR 56
Query: 62 N 62
Sbjct: 57 G 57
>gi|254481328|ref|ZP_05094573.1| 'Cold-shock' DNA-binding domain protein [marine gamma
proteobacterium HTCC2148]
gi|214038491|gb|EEB79153.1| 'Cold-shock' DNA-binding domain protein [marine gamma
proteobacterium HTCC2148]
Length = 145
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFIT + G+++F+H ++ G L +GQ V++ V+ +
Sbjct: 80 REEGEVKWFNVSKGFGFITKDD----GEEIFVHFRSIIGEGRRGLKDGQRVSF--VEANT 133
Query: 62 NGKYSAENLKLV 73
+ AEN++ +
Sbjct: 134 DKGPQAENVEPL 145
>gi|81428557|ref|YP_395557.1| cold shock protein CspA family protein [Lactobacillus sakei
subsp. sakei 23K]
gi|78610199|emb|CAI55248.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
subsp. sakei 23K]
Length = 68
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW++ KGYGFI +++F+H +A+ G L + V ++ +
Sbjct: 1 MERGIVKWFSNAKGYGFIN----YRDDEEIFVHFTAIQIDGYKTLDKDDQVLFEVKEGAR 56
Query: 62 NGKYSAENLKLVPK 75
A N++ +
Sbjct: 57 G--LQAANVQKIEA 68
>gi|172055299|ref|YP_001806626.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
51142]
gi|171701580|gb|ACB54560.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
51142]
Length = 64
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW++ KGYGFI + G+D+F+H S V S +L EGQ V Y+ Q
Sbjct: 1 MAQGQVKWFDTQKGYGFIAQQD---GGEDLFVHYSEVQS---QSLEEGQTVEYEVGQGRK 54
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 55 G--PCAVNVRTI 64
>gi|224084856|ref|XP_002307424.1| predicted protein [Populus trichocarpa]
gi|222856873|gb|EEE94420.1| predicted protein [Populus trichocarpa]
Length = 64
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++ KG+GFI P+ G+D+F+H++++ S G L++GQ V + + +G+
Sbjct: 1 GTVKWFSAQKGFGFIAPDD---GGEDLFVHQTSIQSDGFRTLSDGQPVEFSV-DSGEDGR 56
Query: 65 YSAENL 70
A ++
Sbjct: 57 TKAVDV 62
>gi|33595179|ref|NP_882822.1| cold shock protein [Bordetella parapertussis 12822]
gi|33599462|ref|NP_887022.1| cold shock protein [Bordetella bronchiseptica RB50]
gi|33565256|emb|CAE36055.1| cold shock protein [Bordetella parapertussis]
gi|33567058|emb|CAE30971.1| cold shock protein [Bordetella bronchiseptica RB50]
Length = 67
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI PE G D+F H S + G L E Q V+Y VQ
Sbjct: 1 MQTGIVKWFNDEKGFGFIMPEN---GGPDLFAHYSEIQGEGHKALVEQQRVSY--VQGHG 55
Query: 62 NGKYSAENLKLV 73
A + +
Sbjct: 56 PKGPMATKITPL 67
>gi|126740669|ref|ZP_01756355.1| cold shock family protein [Roseobacter sp. SK209-2-6]
gi|126718184|gb|EBA14900.1| cold shock family protein [Roseobacter sp. SK209-2-6]
Length = 68
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI P+ E G DVF+H S V +GL L + V Y+ +
Sbjct: 1 MPSGTVKWFNTTKGFGFIEPD---EGGKDVFVHISQVERSGLSGLADNMKVDYELTEG-R 56
Query: 62 NGKYSAENLK 71
+G+ A LK
Sbjct: 57 DGRKMAGELK 66
>gi|313802611|gb|EFS43833.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL110PA2]
Length = 135
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ ++
Sbjct: 64 G--EQALSLQIIETPAS 78
>gi|221483569|gb|EEE21881.1| glycine-rich protein, putative [Toxoplasma gondii GT1]
Length = 209
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + Q +
Sbjct: 88 QRGHCKWFDSKKGFGFITAED----GTDLFVHQTEIKAQGFRNLAEGESVEFRV-QVGHD 142
Query: 63 GKYSAENLK 71
GK A ++
Sbjct: 143 GKRKAVSVT 151
>gi|10955166|ref|NP_059822.1| hypothetical protein pTi_150 [Agrobacterium tumefaciens]
gi|8572732|gb|AAF77178.1| ysb [Agrobacterium tumefaciens]
gi|11124691|emb|CAC15178.1| CspA-like protein [Agrobacterium tumefaciens]
Length = 100
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ K +GFITP+ G DVFLH S++ L G + Y Q
Sbjct: 1 MATGKVKWFDATKRFGFITPDD---GGPDVFLHLSSITDPACPTLHPGFRLHYGVEQ--R 55
Query: 62 NGKYSAENLKLVP 74
GK +A +++ P
Sbjct: 56 GGKVTASDVRPAP 68
>gi|260775774|ref|ZP_05884670.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450]
gi|260608190|gb|EEX34359.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450]
Length = 69
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI S +GDD+F+H ++ G L EG V++ +
Sbjct: 7 GTVKWFNETKGFGFI----SQANGDDLFVHFRSILGDGFKKLVEGDKVSFTVGKGPKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTTI 69
>gi|284033793|ref|YP_003383724.1| cold-shock DNA-binding domain-containing protein [Kribbella
flavida DSM 17836]
gi|283813086|gb|ADB34925.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
17836]
Length = 127
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G DV++ A+ AG+ NL GQ V + V+
Sbjct: 1 MPVGKVKWYDSEKGFGFLSKE----EGGDVYVRAEAL-PAGVTNLKPGQKVEFGVVEGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++L+ +
Sbjct: 56 G--EQALQVRLIDPPPS 70
>gi|170053777|ref|XP_001862831.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
gi|167874140|gb|EDS37523.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
Length = 181
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G KW+N KG+GFITP+ G DVF+H+S + G +L + + V ++ D
Sbjct: 26 GHCKWFNVIKGWGFITPDD---GGQDVFVHQSVLQMDGFRSLGQNEPVEFECKLTDKG 80
>gi|163783680|ref|ZP_02178668.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159881085|gb|EDP74601.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 65
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW++ DKGYGFIT + + DVF+H +A+ G L +GQ V ++ ++ +
Sbjct: 1 VKWFSKDKGYGFITRDDNEG---DVFVHFTAIQKEGFKTLEQGQRVEFEIEEDAKGPR-- 55
Query: 67 AENLKLV 73
A+N+ ++
Sbjct: 56 AKNVVIL 62
>gi|83814746|ref|YP_445845.1| hypothetical protein SRU_1727 [Salinibacter ruber DSM 13855]
gi|294507754|ref|YP_003571812.1| cold shock-like protein [Salinibacter ruber M8]
gi|83756140|gb|ABC44253.1| conserved domain protein [Salinibacter ruber DSM 13855]
gi|294344082|emb|CBH24860.1| cold shock-like protein [Salinibacter ruber M8]
Length = 71
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW++ +KGYGFI E +D+F+H S + + G +L E V + D
Sbjct: 4 RETGTVKWFSNEKGYGFIVAEDR---DEDLFVHYSEIDTEGFKSLDEDDRVEFTVGHTDK 60
Query: 62 NGKYSAENLKLV 73
+A+++ ++
Sbjct: 61 G--PNAQDVVVI 70
>gi|221504402|gb|EEE30077.1| glycine-rich protein, putative [Toxoplasma gondii VEG]
Length = 209
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + Q +
Sbjct: 88 QRGHCKWFDSKKGFGFITAED----GTDLFVHQTEIKAQGFRNLAEGESVEFRV-QVGHD 142
Query: 63 GKYSAENLK 71
GK A ++
Sbjct: 143 GKRKAVSVT 151
>gi|227876361|ref|ZP_03994473.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC
35243]
gi|269975926|ref|ZP_06182930.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1]
gi|306817253|ref|ZP_07450999.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239]
gi|307700373|ref|ZP_07637412.1| putative cold shock protein [Mobiluncus mulieris FB024-16]
gi|227842902|gb|EEJ53099.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC
35243]
gi|269935754|gb|EEZ92284.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1]
gi|304649933|gb|EFM47212.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239]
gi|307614358|gb|EFN93588.1| putative cold shock protein [Mobiluncus mulieris FB024-16]
Length = 125
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GFIT G +VFLH SA+ G+ G V Y +
Sbjct: 1 MPNGKVKWYDADKGFGFIT----GSDGIEVFLHASALPP-GVTEPKAGTRVEYSVIDGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ ++ + +
Sbjct: 56 G--AQAMNVTILEEIPS 70
>gi|194335526|ref|YP_002017320.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308003|gb|ACF42703.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 69
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V + Q
Sbjct: 7 GTVKWFNEEKGYGFIE----QKGGKDVFVHHSAINGTGRKTLVEGQKVMMEVTQGAKG-- 60
Query: 65 YSAENLKLV 73
AE++ +
Sbjct: 61 LQAEDVTPL 69
>gi|261856912|ref|YP_003264195.1| cold-shock DNA-binding domain protein [Halothiobacillus
neapolitanus c2]
gi|261837381|gb|ACX97148.1| cold-shock DNA-binding domain protein [Halothiobacillus
neapolitanus c2]
Length = 143
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N DKG+GFI E G+D+F+H AV L EGQ V Y Q
Sbjct: 80 GHVKWFNTDKGFGFIVREN----GEDLFVHFRAVGDGSTLQLVEGQKVEYHIGQGRKG-- 133
Query: 65 YSAENLKLVP 74
AE + ++
Sbjct: 134 PQAEQVVILD 143
>gi|324511297|gb|ADY44709.1| Y-box factor [Ascaris suum]
Length = 294
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI +G+D+F+H++AV L +L +G+ V +D V+
Sbjct: 39 QGTVKWFNVKNGYGFINRAD---TGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEG 95
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 96 QKG--PEAANVT 105
>gi|256397197|ref|YP_003118761.1| cold-shock DNA-binding domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256363423|gb|ACU76920.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
DSM 44928]
Length = 131
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IKWY+ +KG+GFIT + G DVF+H SA+ AG L GQ V +
Sbjct: 1 MPTGKIKWYDTEKGFGFITRDD----GPDVFMHSSAL-PAGTAELKSGQRVEFGVAAGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
+A +KL+ +
Sbjct: 56 GD--TAIGVKLLETRPS 70
>gi|54297162|ref|YP_123531.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris]
gi|148358792|ref|YP_001249999.1| cold shock domain family transporter protein CspA [Legionella
pneumophila str. Corby]
gi|296106837|ref|YP_003618537.1| cold shock domain family protein CspA [Legionella pneumophila
2300/99 Alcoy]
gi|53750947|emb|CAH12358.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris]
gi|148280565|gb|ABQ54653.1| cold shock domain family protein CspA [Legionella pneumophila
str. Corby]
gi|295648738|gb|ADG24585.1| cold shock domain family protein CspA [Legionella pneumophila
2300/99 Alcoy]
gi|307609962|emb|CBW99490.1| hypothetical protein LPW_12631 [Legionella pneumophila 130b]
Length = 77
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI + G+D+F+H + G L E VT++ +
Sbjct: 4 RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 59
Query: 62 NGKYSAENLKLVPKS 76
A+N+ + +S
Sbjct: 60 G--LKAQNVVVASES 72
>gi|251791888|ref|YP_003006608.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter
aphrophilus NJ8700]
gi|247533275|gb|ACS96521.1| cold-shock DNA-binding domain protein [Aggregatibacter
aphrophilus NJ8700]
Length = 69
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI P DVF+H S + L EG V Y+ +
Sbjct: 5 NGTVKWFNSTKGFGFIAPAD---GTKDVFVHFSGIVGNNFRTLNEGDRVAYNVQDSQRG- 60
Query: 64 KYSAENLKLV 73
+A ++++
Sbjct: 61 -PTAVEVEVI 69
>gi|257069730|ref|YP_003155985.1| cold-shock DNA-binding protein family [Brachybacterium faecium
DSM 4810]
gi|256560548|gb|ACU86395.1| cold-shock DNA-binding protein family [Brachybacterium faecium
DSM 4810]
Length = 128
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +K+Y+ +KG+GFI + E G V++H + + G+ L G V +D V
Sbjct: 1 MPRGKVKFYDAEKGFGFILDD---EDGQSVYVHATNL-PDGVTTLRPGTRVDFDMVDGRR 56
Query: 62 NGKYSAENLKLVPKSSN 78
+ A L+L+ + +
Sbjct: 57 GPQVLA--LQLLEPAPS 71
>gi|91205892|ref|YP_538247.1| cold shock-like protein [Rickettsia bellii RML369-C]
gi|157826747|ref|YP_001495811.1| cold shock-like protein [Rickettsia bellii OSU 85-389]
gi|91069436|gb|ABE05158.1| Cold shock-like protein [Rickettsia bellii RML369-C]
gi|157802051|gb|ABV78774.1| Cold shock-like protein [Rickettsia bellii OSU 85-389]
Length = 100
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+NP K +GFI E G DVF+HRSAV +AGL L EGQ V +D D NGK
Sbjct: 37 GKVKWFNPTKNFGFIEQEN---GGKDVFVHRSAVDAAGLAGLNEGQDVIFDLE--DKNGK 91
Query: 65 YSAENLKL 72
SA NL++
Sbjct: 92 ISAVNLRI 99
>gi|52841437|ref|YP_095236.1| cold shock domain-contain protein CspA [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52628548|gb|AAU27289.1| cold shock domain family protein CspA [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 79
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI + G+D+F+H + G L E VT++ +
Sbjct: 6 RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 61
Query: 62 NGKYSAENLKLVPKS 76
A+N+ + +S
Sbjct: 62 G--LKAQNVVVASES 74
>gi|50841960|ref|YP_055187.1| cold shock protein [Propionibacterium acnes KPA171202]
gi|289424366|ref|ZP_06426149.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
SK187]
gi|289428406|ref|ZP_06430092.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
J165]
gi|295130039|ref|YP_003580702.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
SK137]
gi|50839562|gb|AAT82229.1| cold shock protein [Propionibacterium acnes KPA171202]
gi|289155063|gb|EFD03745.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
SK187]
gi|289158378|gb|EFD06595.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
J165]
gi|291375123|gb|ADD98977.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
SK137]
gi|332674879|gb|AEE71695.1| cold shock protein [Propionibacterium acnes 266]
Length = 127
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ ++
Sbjct: 56 G--EQALSLQIIETPAS 70
>gi|29377403|ref|NP_816557.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
gi|29344870|gb|AAO82627.1| cold-shock domain family protein [Enterococcus faecalis V583]
Length = 67
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K +N +GYGFI E G ++F+H++ + G L EGQ V Y+ + +
Sbjct: 1 MKTGTVKSFNHKRGYGFIIAED----GSEIFVHQTGICMPGFRKLLEGQAVEYETAEYE- 55
Query: 62 NGKYSAENLKLVP 74
G+ A N+ ++
Sbjct: 56 -GRTKAVNVTVIE 67
>gi|42560588|ref|NP_975039.1| cold shock protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|42492084|emb|CAE76681.1| COLD SHOCK PROTEIN [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
Length = 69
Score = 77.0 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G +KW+N +KG+GFIT + DVF++ S + G L +GQ VTY+ +
Sbjct: 1 MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYYSNINVNGYKALEQGQKVTYELNKGIK 57
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 58 G--LEAFNVSI 66
>gi|85709645|ref|ZP_01040710.1| cold shock protein [Erythrobacter sp. NAP1]
gi|85688355|gb|EAQ28359.1| cold shock protein [Erythrobacter sp. NAP1]
Length = 262
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFI E G+DVF+H SAV AGL L EGQ + ++ V D G
Sbjct: 108 KGTVKFFNGQKGFGFIQQES---GGEDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 162
Query: 64 KYSAENLKLV 73
K SA++L++V
Sbjct: 163 KVSAQDLQVV 172
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GF+ + D F+H SAV +GL + EG+ +D + D
Sbjct: 194 ATGTVKFFNSMKGFGFLVRDD---GQPDAFVHISAVERSGLSAINEGERFEFDL-EVDRR 249
Query: 63 GKYSAENLKLV 73
GKYSA NL V
Sbjct: 250 GKYSAVNLVPV 260
>gi|329937163|ref|ZP_08286762.1| putative cold shock protein [Streptomyces griseoaurantiacus M045]
gi|329303444|gb|EGG47330.1| putative cold shock protein [Streptomyces griseoaurantiacus M045]
Length = 62
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q A
Sbjct: 2 KWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQKG--PQA 56
Query: 68 ENL 70
EN+
Sbjct: 57 ENI 59
>gi|298717348|ref|YP_003729990.1| cold shock-like protein cspI [Pantoea vagans C9-1]
gi|304395197|ref|ZP_07377081.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|304395198|ref|ZP_07377082.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|298361537|gb|ADI78318.1| Cold shock-like protein cspI [Pantoea vagans C9-1]
gi|304357450|gb|EFM21813.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|304357451|gb|EFM21814.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
Length = 70
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P+ DVF+H SA+ S L EGQ V + +N A G
Sbjct: 6 TGLVKWFDAGKGFGFISPQD---GSKDVFVHFSAIQSNDYKTLDEGQQVEFTI-ENGAKG 61
Query: 64 KYSAENL 70
+A +
Sbjct: 62 PSAANVV 68
>gi|54294149|ref|YP_126564.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens]
gi|53753981|emb|CAH15452.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens]
Length = 77
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI + G+D+F+H + G L E VT++ +
Sbjct: 4 RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 59
Query: 62 NGKYSAENLKLVPKS 76
A+N+ + +S
Sbjct: 60 G--LKAQNVVVASES 72
>gi|163802256|ref|ZP_02196151.1| Cold shock protein [Vibrio sp. AND4]
gi|159174061|gb|EDP58871.1| Cold shock protein [Vibrio sp. AND4]
Length = 69
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI+ E SGDD+F+H ++ G L EG+ V++
Sbjct: 5 ATGTVKWFNEAKGFGFISQE----SGDDLFVHFRSILGDGFKKLVEGEQVSFTVGHGPKG 60
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 61 --LQAENVMAI 69
>gi|294470716|gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
Length = 295
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + W++ KGYGFITP+ GD++F+H+S++ S G +LT G+ V Y +G
Sbjct: 12 TGKVNWFSDGKGYGFITPDD---GGDELFVHQSSIVSDGFRSLTVGESVEYAITLGS-DG 67
Query: 64 KYSAENLK 71
K A +
Sbjct: 68 KTKAVEVT 75
>gi|237841239|ref|XP_002369917.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
gi|211967581|gb|EEB02777.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
Length = 209
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + Q +
Sbjct: 88 QRGHCKWFDSKKGFGFITAED----GTDLFVHQTEIKAQGFRNLAEGESVEFRV-QVGHD 142
Query: 63 GKYSAENLK 71
GK A ++
Sbjct: 143 GKRKAVSVT 151
>gi|88860388|ref|ZP_01135026.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas
tunicata D2]
gi|88817586|gb|EAR27403.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas
tunicata D2]
Length = 69
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N KG+GFI E G DVF H + G LTEGQ V + Q
Sbjct: 5 TTGTVKWFNEAKGFGFIAQEN----GPDVFAHFGNIVGEGFKTLTEGQKVEFIVTQGQKG 60
Query: 63 GKYSAENLKLV 73
AE + +
Sbjct: 61 --PQAEKIVAL 69
>gi|282853550|ref|ZP_06262887.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
J139]
gi|282583003|gb|EFB88383.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
J139]
gi|314922101|gb|EFS85932.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL001PA1]
gi|314965185|gb|EFT09284.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL082PA2]
gi|315093944|gb|EFT65920.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL060PA1]
gi|315104625|gb|EFT76601.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL050PA2]
gi|327329475|gb|EGE71235.1| cold-shock domain protein [Propionibacterium acnes HL103PA1]
Length = 127
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L++V ++
Sbjct: 56 G--EQALSLQIVEAPAS 70
>gi|94264655|ref|ZP_01288437.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
gi|93454886|gb|EAT05130.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
Length = 70
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E + DVF+H + G +L +GQ V + V+
Sbjct: 6 NGKVKWFNAPKGFGFIERENDS----DVFVHYRGIKGDGYRSLQDGQEVIFSVVETPKG- 60
Query: 64 KYSAENLKLV 73
AE ++++
Sbjct: 61 -LQAEEVEVI 69
>gi|28898663|ref|NP_798268.1| cold shock transcriptional regulator CspA [Vibrio
parahaemolyticus RIMD 2210633]
gi|260364904|ref|ZP_05777475.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
K5030]
gi|260879696|ref|ZP_05892051.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AN-5034]
gi|260898831|ref|ZP_05907272.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
Peru-466]
gi|28806881|dbj|BAC60152.1| cold shock transcriptional regulator CspA [Vibrio
parahaemolyticus RIMD 2210633]
gi|308086661|gb|EFO36356.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
Peru-466]
gi|308093445|gb|EFO43140.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
AN-5034]
gi|308111634|gb|EFO49174.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
K5030]
gi|328472899|gb|EGF43747.1| cold shock transcriptional regulator CspA [Vibrio
parahaemolyticus 10329]
Length = 70
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFI+PE G+D+F+H ++ S G L+EGQ V+Y Q
Sbjct: 6 TGSVKWFNETKGFGFISPEN---GGEDLFVHFQSIVSTGFKTLSEGQKVSYVVEQGKKG- 61
Query: 64 KYSAENLKL 72
A + +
Sbjct: 62 -LQAGEVTV 69
>gi|227487248|ref|ZP_03917564.1| CspA family cold shock transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227541584|ref|ZP_03971633.1| CspA family cold shock transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227092906|gb|EEI28218.1| CspA family cold shock transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227182552|gb|EEI63524.1| CspA family cold shock transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 67
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G+++W+NP+ GYGFI + S G D+F+ S + AG L E Q V Y ++
Sbjct: 1 MAQGTVRWFNPESGYGFIIDDES---GQDLFVRYSDIEGAGFRTLQENQRVDYFVMEGPK 57
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 58 G--AHASRVRTV 67
>gi|303246711|ref|ZP_07332989.1| cold-shock DNA-binding domain protein [Desulfovibrio
fructosovorans JJ]
gi|302492051|gb|EFL51929.1| cold-shock DNA-binding domain protein [Desulfovibrio
fructosovorans JJ]
Length = 68
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW++ KGYGFI E DDVF+H S++ G L EG+LV +D +Q +
Sbjct: 1 MGFEGTVKWFSDKKGYGFIMRE----GEDDVFVHYSSIEGEGFRTLREGELVQFDIIQGE 56
Query: 61 ANGKYSAENL 70
K A N+
Sbjct: 57 RGPK--ATNV 64
>gi|162452081|ref|YP_001614448.1| cold shock protein [Sorangium cellulosum 'So ce 56']
gi|161162663|emb|CAN93968.1| cold shock protein [Sorangium cellulosum 'So ce 56']
Length = 68
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFI E +G DVF+H S + G L E + V ++ +
Sbjct: 1 MAVGKVKWFNDEKGWGFIKQE----TGPDVFVHYSQINGEGRRRLFEDETVEFEIKEGPK 56
Query: 62 NGKYSAENL 70
A N+
Sbjct: 57 G--LQAVNV 63
>gi|269955008|ref|YP_003324797.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269303689|gb|ACZ29239.1| cold-shock DNA-binding domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 311
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ +G+++W++ ++G+GFI +D+F+H S + G L EGQ V ++ + D
Sbjct: 1 MPQGTVRWFDAERGFGFI---DVGNEAEDLFVHASEIVGDDGPRLLREGQAVEFEVGEGD 57
Query: 61 ANGKYSAENLKL 72
A +++
Sbjct: 58 RG--PQARRVRV 67
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY+ KG+GF+ P+ G+DVF+H SA+ GL L EG VTYD V+ +
Sbjct: 158 GTVSWYDDTKGFGFVAPDS---GGEDVFVHVSAL-GPGLTELFEGARVTYDVVEGERG-- 211
Query: 65 YSAENLKLVPKSS 77
+A +++LV S
Sbjct: 212 PNAHDVRLVRVSG 224
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ Y+ ++G+GFITP+ G D+F+H S + G +L EG V + Q+D
Sbjct: 250 GTVARYDAERGFGFITPD---AGGADLFVHVSVLRGVG--DLAEGDRVRFKVRQSDRG-- 302
Query: 65 YSAENLKLV 73
A+ ++LV
Sbjct: 303 PQADGVELV 311
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGF+TP+G D+VF+H SA+ G+ ++EGQ V + V+ +
Sbjct: 81 GTVSWYEPAKGYGFVTPDG---GRDEVFVHSSAIVGGGV--ISEGQRVAFLVVEGERG-- 133
Query: 65 YSAENL 70
A++L
Sbjct: 134 LQADHL 139
>gi|302808614|ref|XP_002986001.1| hypothetical protein SELMODRAFT_123455 [Selaginella
moellendorffii]
gi|300146149|gb|EFJ12820.1| hypothetical protein SELMODRAFT_123455 [Selaginella
moellendorffii]
Length = 63
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G +KW+N KG+GFITP+ +++F+H+SA+ + G +L EG++V + Q +
Sbjct: 10 TGKVKWFNVTKGFGFITPDD---GSEELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63
>gi|229819345|ref|YP_002880871.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
12333]
gi|229565258|gb|ACQ79109.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
12333]
Length = 127
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+++ D+G+GFI + G +VFLH SA+ AG + G V +
Sbjct: 1 MPTGKVKFFDADRGFGFIAADD----GGEVFLHASAL-PAGSPSPKPGTRVDFGIADGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 G--PQALSVTILDPAPS 70
>gi|18398546|ref|NP_565427.1| cold-shock DNA-binding family protein [Arabidopsis thaliana]
gi|14334920|gb|AAK59638.1| putative glycine-rich, zinc-finger DNA-binding protein
[Arabidopsis thaliana]
gi|17104541|gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein
[Arabidopsis thaliana]
gi|148726892|dbj|BAF63841.1| cold shock domain protein 3 [Arabidopsis thaliana]
gi|330251603|gb|AEC06697.1| cold shock domain protein 3 [Arabidopsis thaliana]
Length = 301
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + W++ KGYGFITP+ G+++F+H+S++ S G +LT G+ V Y+ +GK
Sbjct: 13 GKVSWFSDGKGYGFITPDD---GGEELFVHQSSIVSDGFRSLTLGESVEYEIALGS-DGK 68
Query: 65 YSAENLK 71
A +
Sbjct: 69 TKAIEVT 75
>gi|262067005|ref|ZP_06026617.1| cold-shock domain protein [Fusobacterium periodonticum ATCC
33693]
gi|291379265|gb|EFE86783.1| cold-shock domain protein [Fusobacterium periodonticum ATCC
33693]
Length = 65
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ +
Sbjct: 2 KGTVKWFNKEKGFGFITGED----GKDVFAHFSQIQKEGFKELFEGQEVEFEISEGQKR 56
>gi|257126384|ref|YP_003164498.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis
C-1013-b]
gi|257050323|gb|ACV39507.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis
C-1013-b]
Length = 65
Score = 76.6 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI+ E G+D FLH S + G + EG+ V++D +
Sbjct: 3 GKVKWFNDKKGFGFISGED----GNDYFLHFSKINKEGFKTVNEGEEVSFDVEEGPKG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQATNV 62
>gi|111017122|ref|YP_700094.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110816652|gb|ABG91936.1| cold shock protein [Rhodococcus jostii RHA1]
Length = 119
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G+++W+N ++G+GF+ P DD+F+H S +A G L EGQ V++ + +
Sbjct: 55 TGTVRWFNAEQGFGFLAPAD---GSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTETGD 111
Query: 64 KYSAENLKL 72
A ++++
Sbjct: 112 --QARDVRI 118
>gi|163786330|ref|ZP_02180778.1| cold shock protein [Flavobacteriales bacterium ALC-1]
gi|159878190|gb|EDP72246.1| cold shock protein [Flavobacteriales bacterium ALC-1]
Length = 84
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFIT EGS D F+H S + + + EG V +D +
Sbjct: 22 MSTGTVKFFNDSKGFGFITEEGS---DKDHFVHISGL----VDEIKEGDNVEFDLTEGKK 74
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 75 G--LNAVNVKVI 84
>gi|307720566|ref|YP_003891706.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
DSM 16294]
gi|306978659|gb|ADN08694.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
DSM 16294]
Length = 72
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N +KGYGFI + G DVF+H V + G +L EGQ VT++ +
Sbjct: 7 GSVKWFNDEKGYGFIQQDN---GGKDVFVHFRQVNNNGGGRVSLAEGQRVTFEVGEGQKG 63
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 64 --PQAENVTPL 72
>gi|322435626|ref|YP_004217838.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321163353|gb|ADW69058.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 71
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GF+ E DVF H S++ + G +L EG V YD + D
Sbjct: 5 KGEVKWFNNAKGFGFLGRE----GEPDVFCHYSSIQTDGYKSLKEGDKVEYDVILGDKG- 59
Query: 64 KYSAENLKLVPKS 76
A+ + V
Sbjct: 60 -LQADQVVRVGAE 71
>gi|163791084|ref|ZP_02185504.1| cold-shock protein [Carnobacterium sp. AT7]
gi|159873640|gb|EDP67724.1| cold-shock protein [Carnobacterium sp. AT7]
Length = 68
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
+ G++KW++ +KGYGFI +D+F+H + + + G +LT+GQLV+++ ++
Sbjct: 1 MENGTVKWFSNEKGYGFIE----YNETEDIFVHFTGIVNEDGFKSLTDGQLVSFEILEGT 56
Query: 61 ANGKYSAENLKLVP 74
A N+ ++
Sbjct: 57 RG--PQATNVIVLD 68
>gi|300856488|ref|YP_003781472.1| putative cold shock protein CspA [Clostridium ljungdahlii DSM
13528]
gi|300436603|gb|ADK16370.1| predicted cold shock protein CspA [Clostridium ljungdahlii DSM
13528]
Length = 67
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G++KW+N +KG+GFI +DVF+H +A+ S NL EGQ V +D +
Sbjct: 1 MKIGTVKWFNSEKGFGFIEV----PGENDVFVHFTAIQSDEPRKNLEEGQKVQFDVEEGP 56
Query: 61 ANGKYSAENLKLV 73
A N+ +
Sbjct: 57 KG--LQAANVVKL 67
>gi|213423037|ref|ZP_03356055.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 55
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+G++KW+N KG+GFITPE DVF+H SA+ + G L EGQ V ++
Sbjct: 3 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNG 55
>gi|145347619|ref|XP_001418260.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578489|gb|ABO96553.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 106
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG +KW+N KG+GFI P +++F+H++ ++ AG ++ EG+ V YD +D
Sbjct: 4 RARGKVKWFNATKGFGFIIPHD---GSEEIFVHQTGISCAGFRSVWEGEEVEYDV--DDT 58
Query: 62 NGKYSAENLK 71
+ A N+
Sbjct: 59 DFAPKAVNVT 68
>gi|159039857|ref|YP_001539110.1| cold-shock DNA-binding domain-containing protein [Salinispora
arenicola CNS-205]
gi|157918692|gb|ABW00120.1| cold-shock DNA-binding domain protein [Salinispora arenicola
CNS-205]
Length = 128
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KGYGF+T + G DVFL ++A+ AG+ +L GQ V + V +
Sbjct: 1 MPTGRVKWYDATKGYGFVTSD----EGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +KL+ +
Sbjct: 56 G--AQAMGVKLLEAPPS 70
>gi|300781744|ref|ZP_07091598.1| cold-shock domain family protein [Corynebacterium genitalium ATCC
33030]
gi|300533451|gb|EFK54512.1| cold-shock domain family protein [Corynebacterium genitalium ATCC
33030]
Length = 127
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GF+ S +DV++ ++ + G+ +L GQ + +D+
Sbjct: 1 MPVGKVKWFDAEKGFGFV----SNPGDEDVYVGKNVL-PDGVEDLHPGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A +KL+
Sbjct: 56 G--PQALRVKLLDA 67
>gi|91223648|ref|ZP_01258913.1| Cold shock protein [Vibrio alginolyticus 12G01]
gi|91191734|gb|EAS77998.1| Cold shock protein [Vibrio alginolyticus 12G01]
Length = 69
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI+ E GDD+F+H ++ G L EG+ V++ +
Sbjct: 7 GTVKWFNETKGFGFISQEN----GDDLFVHFRSILGDGFKKLIEGEQVSFTVGKGPKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTTI 69
>gi|296116126|ref|ZP_06834744.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
gi|295977232|gb|EFG83992.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
Length = 208
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60
RG +KWYN KG+GFITPE G D+F+H SA+ + GL +L+EGQ V+
Sbjct: 141 RGIVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTSLSEGQTANVQVVEGQ 197
Query: 61 ANGKYSAENL 70
+ +A ++
Sbjct: 198 KGPEAAAISV 207
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ DVFLH +A+ G ++ G + Q +
Sbjct: 38 TVKWFNSEKGFGFVELSD---GSGDVFLHANALNPTGFETVSPGSTLVVRIGQGPKGRQV 94
Query: 66 SAEN 69
+A
Sbjct: 95 AAVV 98
>gi|77410386|ref|ZP_00786777.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae COH1]
gi|77171004|gb|EAO74482.1| cold shock protein, CSD family-related protein [Streptococcus
agalactiae COH1]
Length = 64
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N +KG+GFI+ E +G DVF H S + G L EGQ VT+D
Sbjct: 1 MTQGTVKWFNSEKGFGFISSE----TGTDVFAHFSEIKVDGFKTLEEGQKVTFDIQDGQ 55
>gi|301066334|ref|YP_003788357.1| cold shock protein [Lactobacillus casei str. Zhang]
gi|300438741|gb|ADK18507.1| Cold shock protein [Lactobacillus casei str. Zhang]
Length = 73
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N DKGYGFI E D+F+H SA+ +G +LT G+ V + V+
Sbjct: 2 QGRVKNFNVDKGYGFIEAE----GQPDIFVHFSAINESGFKSLTPGETVDFVIVEGPRG- 56
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 57 -PQAANVTV 64
>gi|297278427|ref|XP_001088540.2| PREDICTED: hypothetical protein LOC700140 [Macaca mulatta]
Length = 511
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 205 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 261
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 262 KG--AEAANVT 270
>gi|262037747|ref|ZP_06011189.1| cold shock protein-related protein [Leptotrichia goodfellowii
F0264]
gi|261748219|gb|EEY35616.1| cold shock protein-related protein [Leptotrichia goodfellowii
F0264]
Length = 65
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI+ E G+D FLH S + G ++ EG+ V++D +
Sbjct: 3 GKVKWFNDKKGFGFISGED----GNDYFLHFSKINKEGFKSVNEGEEVSFDVEEGPKG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQATNV 62
>gi|145596458|ref|YP_001160755.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
gi|145305795|gb|ABP56377.1| cold-shock DNA-binding protein family [Salinispora tropica
CNB-440]
Length = 128
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KGYGF+T + G DVFL ++A+ AG+ +L GQ V + V +
Sbjct: 1 MPTGRVKWYDATKGYGFVTND----EGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +KL+ +
Sbjct: 56 G--AQAMGVKLLEAPPS 70
>gi|70905153|gb|AAZ14100.1| cold shock protein [Pseudomonas fluorescens]
Length = 69
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H G +L EGQ V++ V
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHF-PFQGTGFKSLQEGQKVSFVVVNGQK 59
Query: 62 NGKYSAENLKLV 73
A+ +++V
Sbjct: 60 G--LQADEVQVV 69
>gi|226359632|ref|YP_002777410.1| cold shock protein [Rhodococcus opacus B4]
gi|226238117|dbj|BAH48465.1| cold shock protein [Rhodococcus opacus B4]
Length = 81
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G+++W+N D+G+GF+ P DDVF+H S +A G L EGQ V++ + D
Sbjct: 17 TGTVRWFNADQGFGFLAPAD---GSDDVFVHVSEIAGDGHRILVEGQRVSFTVCRTDTGN 73
Query: 64 KYSAENLKL 72
A ++++
Sbjct: 74 --QARDVRI 80
>gi|219123826|ref|XP_002182218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406179|gb|EEC46119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 286
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
+G++KW++ KGYGF+ P ++ + +++F+H++++ S G L E + +D +
Sbjct: 5 QGTVKWFDSRKGYGFVAPTSDNSPTAEEIFVHQTSIQSEGAYRTLVENSEIEFDVEKEAE 64
Query: 62 NGKYSAENLK 71
+GK+ A N+
Sbjct: 65 SGKFKAINVT 74
>gi|307293725|ref|ZP_07573569.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
L-1]
gi|306879876|gb|EFN11093.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
L-1]
Length = 275
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++K++N KG+GFI + D F+H SAV AG+ L EG + ++ + D
Sbjct: 206 RASGTVKFFNAMKGFGFIQRDD---GQPDAFVHISAVERAGMSALNEGDRLDFEL-EVDR 261
Query: 62 NGKYSAENLK 71
GKY+A NL+
Sbjct: 262 RGKYAAVNLQ 271
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K++N KG+GFI + G+DVF+H SAV AGL L EGQ + + V D G
Sbjct: 106 TGVVKFFNGQKGFGFIVRDD---GGEDVFVHISAVEQAGLTGLAEGQQLGFTLV--DRGG 160
Query: 64 KYSAENLKL 72
K SA +LK+
Sbjct: 161 KVSATDLKI 169
>gi|293390613|ref|ZP_06634947.1| cold-shock DNA-binding domain protein [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951147|gb|EFE01266.1| cold-shock DNA-binding domain protein [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 69
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI P DVF+H S + L EG V Y+ +
Sbjct: 5 NGTVKWFNSTKGFGFIAPAN---GSKDVFVHFSGIVGNNFRTLNEGDRVAYNVQDSQRG- 60
Query: 64 KYSAENLKLV 73
+A +++V
Sbjct: 61 -PTAIEVEVV 69
>gi|288959216|ref|YP_003449557.1| cold shock protein [Azospirillum sp. B510]
gi|288911524|dbj|BAI73013.1| cold shock protein [Azospirillum sp. B510]
Length = 186
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N DKG+GFITP + G DVF+H + + +G+ L EG V Q
Sbjct: 123 GTVKWFNADKGFGFITP---STGGKDVFVHVNVLRRSGMQTLQEGDQVRVTVRQGQKGP 178
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
++KW+NP KG+GF++PE D FLH SAV +AG L EG +T D +
Sbjct: 21 TATVKWFNPTKGFGFVSPED---GSPDAFLHVSAVQAAGYDALDEGTTITCDLARGPKGP 77
Query: 64 KYS 66
+ +
Sbjct: 78 QVA 80
>gi|259047117|ref|ZP_05737518.1| cold shock domain protein CspD [Granulicatella adiacens ATCC
49175]
gi|259036167|gb|EEW37422.1| cold shock domain protein CspD [Granulicatella adiacens ATCC
49175]
Length = 71
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KGYGFI +T++ +D+F+H + + + G +L EGQ VT++ +
Sbjct: 1 MEVGIVKWFNNEKGYGFIR---NTKTDEDIFVHFTGIVAEGFKSLKEGQKVTFEISKGTH 57
Query: 62 NGKYSAENLKLV 73
A +++ +
Sbjct: 58 G--VQATHVETL 67
>gi|111224718|ref|YP_715512.1| major cold shock protein/transcription antiterminator [Frankia
alni ACN14a]
gi|111152250|emb|CAJ63981.1| major cold shock protein 7.4, transcription antiterminator of
hns, ssDNA-binding property [Frankia alni ACN14a]
Length = 63
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N +KG+GFI+ +G G DVF+H S++ S G +L EGQ V++D Q A
Sbjct: 2 KWFNAEKGFGFISVDG---GGGDVFVHFSSIVSEGFKSLDEGQRVSFDIEQGQKG--LQA 56
Query: 68 ENLKLV 73
++ +
Sbjct: 57 AKVQAI 62
>gi|297243561|ref|ZP_06927492.1| cold shock protein [Gardnerella vaginalis AMD]
gi|296888312|gb|EFH27053.1| cold shock protein [Gardnerella vaginalis AMD]
Length = 129
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++WY+ KGYGFI + G DVFL +A+ + L +G V + ++
Sbjct: 1 MPNGRVRWYDTQKGYGFIVGDD----GKDVFLPAAALPVT-VKTLHKGTRVEFSVIEGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L ++ + +
Sbjct: 56 G--PQAMGLNVIATAPS 70
>gi|254496824|ref|ZP_05109675.1| cold shock domain-contain protein CspA [Legionella drancourtii
LLAP12]
gi|254353951|gb|EET12635.1| cold shock domain-contain protein CspA [Legionella drancourtii
LLAP12]
Length = 73
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI + GDD+F+H + G L E VT+ +
Sbjct: 4 RETGHVKWFNEKKGFGFI----INQQGDDIFVHYKDIQGVGFKTLHENDPVTFVLDKGPK 59
Query: 62 NGKYSAENLKLVPKS 76
A+++ L+ ++
Sbjct: 60 G--LKAQDVALLSEA 72
>gi|78777701|ref|YP_394016.1| cold-shock DNA-binding domain-containing protein [Sulfurimonas
denitrificans DSM 1251]
gi|78498241|gb|ABB44781.1| cold-shock DNA-binding protein family [Sulfurimonas denitrificans
DSM 1251]
Length = 72
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N +KGYGFI E G DVF+H V G +L+EGQ VT++ +
Sbjct: 7 GSVKWFNEEKGYGFIQQEN---GGKDVFVHFRQVNRTGPGRVSLSEGQKVTFELGEGQKG 63
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 64 --PQAENVTPL 72
>gi|294791478|ref|ZP_06756635.1| cold-shock domain family protein [Scardovia inopinata F0304]
gi|294457949|gb|EFG26303.1| cold-shock domain family protein [Scardovia inopinata F0304]
Length = 129
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I+W++ KGYGFIT + G+DVFL ++A+ AG+ L +G V + + +
Sbjct: 1 MPSGKIRWFDAKKGYGFITSDD----GEDVFLPKTAL-PAGISKLRKGAKVEFSRIDSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L +V + +
Sbjct: 56 G--PQAMDLVVVGPAPS 70
>gi|258542278|ref|YP_003187711.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01]
gi|329113442|ref|ZP_08242223.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
gi|256633356|dbj|BAH99331.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01]
gi|256636415|dbj|BAI02384.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-03]
gi|256639468|dbj|BAI05430.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-07]
gi|256642524|dbj|BAI08479.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-22]
gi|256645579|dbj|BAI11527.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-26]
gi|256648632|dbj|BAI14573.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-32]
gi|256651685|dbj|BAI17619.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654676|dbj|BAI20603.1| transcriptional regulator cold shock protein [Acetobacter
pasteurianus IFO 3283-12]
gi|326697267|gb|EGE48927.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
Length = 225
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG++KWYN KG+GFITPE G D+F+H SA+ +GL L EGQ V VQ
Sbjct: 160 TRGTVKWYNSVKGFGFITPES---GGKDIFVHASALERSGLSALNEGQGVNVKVVQGQK- 215
Query: 63 GKYSAEN 69
G +AE
Sbjct: 216 GPEAAEV 222
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ DVFLH +A++ AG ++ G + Q G+
Sbjct: 63 TVKWFNSEKGFGFVELAD---GTGDVFLHANALSQAGHQGVSPGATLVVRIGQGPK-GRQ 118
Query: 66 SAENLKLVPKSS 77
AE + + ++
Sbjct: 119 VAEVISVDESTA 130
>gi|283783195|ref|YP_003373949.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis
409-05]
gi|283441802|gb|ADB14268.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis
409-05]
Length = 129
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++WY+ KGYGFI + G DVFL +A+ + +L +G V + ++
Sbjct: 1 MPNGRVRWYDTQKGYGFIVGDD----GKDVFLPAAALPVT-VKSLHKGTRVEFSVIEGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L ++ + +
Sbjct: 56 G--PQAMGLNVIATAPS 70
>gi|284038260|ref|YP_003388190.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
gi|283817553|gb|ADB39391.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
Length = 198
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GFI + S GDD+F+H SA+ + + E V +
Sbjct: 137 QTGTVKFFNETKGFGFIKSDSS---GDDIFVHVSAL----IDQIHENDKVRFSIEHGRKG 189
Query: 63 GKYSAENLKLV 73
+A N+KL+
Sbjct: 190 --LNAVNIKLL 198
>gi|15604514|ref|NP_221032.1| cold shock-like protein (cspA) [Rickettsia prowazekii str. Madrid
E]
gi|6225211|sp|Q9ZCP9|CSPA_RICPR RecName: Full=Cold shock-like protein CspA
gi|3861208|emb|CAA15108.1| COLD SHOCK-LIKE PROTEIN (cspA) [Rickettsia prowazekii]
gi|292572298|gb|ADE30213.1| Cold shock-like protein [Rickettsia prowazekii Rp22]
Length = 70
Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWYN K +GFI + G DVF+H+SA+ +AGL +L EGQ V +D + GK
Sbjct: 7 GKVKWYNSTKNFGFIEQDN---GGKDVFVHKSAIDAAGLHSLEEGQEVIFDIEE--KQGK 61
Query: 65 YSAENLKL 72
A NL++
Sbjct: 62 AYAVNLRV 69
>gi|90419403|ref|ZP_01227313.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
gi|90336340|gb|EAS50081.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
Length = 210
Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWYN DKG+GFI + G DVF+H +A+ +GL L +GQ VT +VQ +
Sbjct: 145 TGTVKWYNADKGFGFIGLDDGA--GKDVFVHATALNRSGLTTLADGQKVTVRFVQGNKGP 202
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVTYDYVQNDAN 62
+ W+N KG+GF+ G + FLH A+ +AG +TEG +T Q
Sbjct: 51 VMWFNATKGFGFVKAAD----GTEAFLHVRALEAAGASADAVTEGTRLTVRIDQGQKG 104
>gi|57339760|gb|AAW49867.1| hypothetical protein FTT0391 [synthetic construct]
Length = 102
Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ +
Sbjct: 32 QGTVKFFNEQKGFGFITPEN---GGKDVFVHISKLNGE---TLAEGQQVTFETQEGRKG- 84
Query: 64 KYSAENLKLV 73
A N++++
Sbjct: 85 -PEAINIEVL 93
>gi|183602622|ref|ZP_02963987.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
gi|241190696|ref|YP_002968090.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196102|ref|YP_002969657.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|183218263|gb|EDT88909.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
gi|240249088|gb|ACS46028.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250656|gb|ACS47595.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|289178434|gb|ADC85680.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793685|gb|ADG33220.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
animalis subsp. lactis V9]
Length = 70
Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++K++N +GYGFITPE G DVF+H S++ + G L +G LV YD D
Sbjct: 1 MPRGTVKFFNVGRGYGFITPED---GGADVFVHYSSIEAEGFKALRQGDLVEYDSKPTDK 57
Query: 62 NGKYSAENLKL 72
G+ + +K+
Sbjct: 58 -GELATRVVKI 67
>gi|307610951|emb|CBX00570.1| hypothetical protein LPW_22881 [Legionella pneumophila 130b]
Length = 69
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E G DVF H ++S+G LTEGQ V + Q
Sbjct: 6 NGVVKWFNELKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -LQAQNITPL 69
>gi|170596965|ref|XP_001902961.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
gi|158589027|gb|EDP28189.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
Length = 290
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI +GDD+F+H++AV L +L +G+ V +D V+
Sbjct: 59 QGTVKWFNVKNGYGFINRAD---TGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEG 115
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 116 QKG--PEAANVT 125
>gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii
DSM 10542]
gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542]
Length = 317
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQN 59
+ +G+++W++ ++G+GF+ + DD+F+H S + G +L EGQ V ++ +
Sbjct: 1 MPQGTVRWFDAERGFGFLALDD---GADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEG 57
Query: 60 DANGKYSAENLKLVPKSS 77
D A +++ S+
Sbjct: 58 DRG--PQARRVQITGDSA 73
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++ WY+ KG+GF+TP+ D F+H ++A G L EG V++ V D
Sbjct: 164 TVSWYDAGKGFGFVTPDSGE---PDAFVHARSLAG-GATELVEGDRVSFSVVPGDRG--P 217
Query: 66 SAENLKLV 73
A+++++V
Sbjct: 218 QAQDVRVV 225
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGF+TP+G G ++F H SA+ G+ + EGQ V + V+ +
Sbjct: 82 GTVTWYEPTKGYGFVTPDG---GGAEIFAHSSAIVGGGV--IAEGQRVAFLVVEGEKG-- 134
Query: 65 YSAENL 70
A++L
Sbjct: 135 PQADHL 140
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + Y+ ++G+GFITP+ G D+F+H S V L EG V + Q+D
Sbjct: 256 GVVARYDAERGFGFITPDS---GGPDLFVHVSVVREG--QELYEGDRVRFQVRQSDRG-- 308
Query: 65 YSAENLKL 72
A+ + L
Sbjct: 309 PQADRVDL 316
>gi|254458182|ref|ZP_05071608.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
bacterium GD 1]
gi|207085018|gb|EDZ62304.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
bacterium GD 1]
Length = 72
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+N +KGYGFI + G DVF+H V G +L EGQ VTY+ +
Sbjct: 7 GSVKWFNEEKGYGFIQQDN---GGQDVFVHFRQVNHTGGGRVSLAEGQKVTYEVGEGQKG 63
Query: 63 GKYSAENLKLV 73
AEN+ +
Sbjct: 64 --PQAENVTPL 72
>gi|83319695|ref|YP_424021.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|313664918|ref|YP_004046789.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50]
gi|83283581|gb|ABC01513.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|312949345|gb|ADR23941.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50]
Length = 68
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N +KG+GFIT + DVF++ + + G L +GQ V+Y+ +
Sbjct: 1 MSTGIVKWFNDEKGFGFITNDS---DNKDVFVYFANINVNGYKTLEQGQKVSYELNKGIK 57
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 58 G--LEAFNVSI 66
>gi|190014803|ref|YP_001967567.1| orf_Bo170 [Agrobacterium tumefaciens]
gi|71849606|gb|AAZ50554.1| orf_Bo170 [Agrobacterium tumefaciens]
Length = 100
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ K +GFITP+ G DVFLH S++A L G + Y Q
Sbjct: 1 MPTGKVKWFDAAKRFGFITPDD---GGPDVFLHLSSIADPACPTLQPGLRLHYGVQQ--K 55
Query: 62 NGKYSAENLKLVP 74
GK +A+++ VP
Sbjct: 56 GGKVTAKDVGPVP 68
>gi|315122408|ref|YP_004062897.1| cold shock protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495810|gb|ADR52409.1| cold shock protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 74
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 2/70 (2%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RGSIKWY+ +KGYGFIT ++ DVFLHRSAV SAGL ++ EGQ V YD+V+N+ G
Sbjct: 7 RGSIKWYDANKGYGFIT--SASAGEKDVFLHRSAVMSAGLPDVREGQEVIYDFVENETTG 64
Query: 64 KYSAENLKLV 73
K+SAEN+KLV
Sbjct: 65 KFSAENIKLV 74
>gi|134034058|sp|Q1RHK6|CSPA_RICBR RecName: Full=Cold shock-like protein CspA
Length = 70
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+NP K +GFI E G DVF+HRSAV +AGL L EGQ V +D D NGK
Sbjct: 7 GKVKWFNPTKNFGFIEQEN---GGKDVFVHRSAVDAAGLAGLNEGQDVIFDLE--DKNGK 61
Query: 65 YSAENLKL 72
SA NL++
Sbjct: 62 ISAVNLRI 69
>gi|71027909|ref|XP_763598.1| cold shock protein [Theileria parva strain Muguga]
gi|68350551|gb|EAN31315.1| cold shock protein, putative [Theileria parva]
Length = 94
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G KW+N KGYGFIT E G+DVF+H+S + + G +L E + V + + ++
Sbjct: 5 NGVCKWFNNKKGYGFITLEN----GEDVFVHQSEIYADGFRSLRENEKVELEVIMDNNRK 60
Query: 64 KYSAENLK 71
K A ++
Sbjct: 61 K--AIHVT 66
>gi|153216791|ref|ZP_01950615.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587]
gi|153800523|ref|ZP_01955109.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3]
gi|153828062|ref|ZP_01980729.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39]
gi|229526634|ref|ZP_04416038.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
gi|229528256|ref|ZP_04417647.1| cold shock transcriptional regulator CspA [Vibrio cholerae
12129(1)]
gi|124114125|gb|EAY32945.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587]
gi|124123967|gb|EAY42710.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3]
gi|148876471|gb|EDL74606.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39]
gi|229334618|gb|EEO00104.1| cold shock transcriptional regulator CspA [Vibrio cholerae
12129(1)]
gi|229336792|gb|EEO01810.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
Length = 70
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GF++ + GDDVF+H +++ S G L EGQ V+Y +
Sbjct: 6 TGSVKWFNETKGFGFLSQDN---GGDDVFVHFNSIVSTGFKTLAEGQKVSYLVEKGKKG- 61
Query: 64 KYSAENLKLV 73
A + ++
Sbjct: 62 -LQAAEVTVL 70
>gi|313835454|gb|EFS73168.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL037PA2]
gi|314928529|gb|EFS92360.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL044PA1]
gi|314970448|gb|EFT14546.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL037PA3]
Length = 135
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNALKPGQKVDFGIVEGRR 63
Query: 62 NGKYSAENLKLVPKSSN 78
A +L++V ++
Sbjct: 64 G--EQALSLQIVETPAS 78
>gi|270158306|ref|ZP_06186963.1| cold shock-like protein CspG [Legionella longbeachae D-4968]
gi|289163444|ref|YP_003453582.1| DNA-binding transcriptional repressor [Legionella longbeachae
NSW150]
gi|269990331|gb|EEZ96585.1| cold shock-like protein CspG [Legionella longbeachae D-4968]
gi|288856617|emb|CBJ10424.1| DNA-binding transcriptional repressor [Legionella longbeachae
NSW150]
Length = 69
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E SG DVF H + S+G LTEGQ V + Q
Sbjct: 6 NGIVKWFNEAKGFGFIEQE----SGPDVFAHFKEIVSSGFKTLTEGQRVQFVVTQGAKG- 60
Query: 64 KYSAENLKLV 73
A+++ L+
Sbjct: 61 -PQAQSITLL 69
>gi|188576172|ref|YP_001913101.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520624|gb|ACD58569.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 61
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A
Sbjct: 2 KWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG--MQA 55
Query: 68 ENLKLV 73
+ ++ V
Sbjct: 56 DQVQAV 61
>gi|54294960|ref|YP_127375.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens]
gi|53754792|emb|CAH16279.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens]
Length = 69
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E G DVF H ++S+G LTEGQ V + Q
Sbjct: 6 NGVVKWFNEIKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -LQAQNITPL 69
>gi|294508943|ref|YP_003565832.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM
B1551]
gi|294352247|gb|ADE72569.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM
B1551]
Length = 69
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G+IKWYN +KGYGFIT E T ++F+ ++ G +L EGQ V++D
Sbjct: 3 RQNGTIKWYNFNKGYGFITREDET----EIFVSYRSIEGNGYADLREGQKVSFDVETGQK 58
Query: 62 NGKYSAENLKLVP 74
A ++++
Sbjct: 59 G--LEAVRVRVLD 69
>gi|9957540|gb|AAG09405.1|AF179614_1 cold shock protein B [Yersinia enterocolitica]
Length = 62
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI+P DVF+H SA+ L EGQ V + Q
Sbjct: 6 TGLVKWFDAGKGFGFISPAD---GSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGP 62
>gi|2493771|sp|P72188|CAPA_PSEFR RecName: Full=Cold shock protein CapA; AltName: Full=C7.0;
AltName: Full=Cold acclimation protein A
gi|1513079|gb|AAC45996.1| cold acclimation protein A [Pseudomonas fragi]
Length = 64
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ +
Sbjct: 4 RQSGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 60
Query: 62 NGKYSA 67
A
Sbjct: 61 G--MQA 64
>gi|268315810|ref|YP_003289529.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
marinus DSM 4252]
gi|262333344|gb|ACY47141.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
4252]
Length = 95
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
RG +KW++ KGYGFI E G D+F+H S + S L GQ+V ++ +
Sbjct: 5 RGVVKWFDAKKGYGFII---HPEGGADIFVHYSQIISERRFKTLRTGQIVEFELHEGPKG 61
Query: 63 GKYSAENLKLVPK 75
A N+ + +
Sbjct: 62 --LHARNVVPLDE 72
>gi|88606701|ref|YP_504760.1| CSD family cold shock protein [Anaplasma phagocytophilum HZ]
gi|88597764|gb|ABD43234.1| cold shock protein, CSD family [Anaplasma phagocytophilum HZ]
Length = 89
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGST--------ESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
+ G +KW++ +KGYGFI + S DVF+H +++ + + NL EGQ V Y
Sbjct: 11 YTGHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRY 70
Query: 55 DYVQNDANGKYSAENLKLVPK 75
+N NGK SA NL+++ +
Sbjct: 71 QLDEN--NGKVSAVNLEVLSE 89
>gi|296118317|ref|ZP_06836898.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM
20306]
gi|295968875|gb|EFG82119.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM
20306]
Length = 127
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GF+ S +DV++ R+ + G+ L +GQ + +D+
Sbjct: 1 MPIGKVKWFDAEKGFGFV----SNPGDEDVYVGRNVL-PEGVEELVQGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRVKILET 67
>gi|2493765|sp|Q45100|CSPE_BACCE RecName: Full=Cold shock-like protein CspE
gi|1405478|emb|CAA63611.1| CspE protein [Bacillus cereus]
Length = 54
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
M G +KW+N +KG+GFI G DVF+H SA+ G +L EGQ V+++
Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVAD----GSDVFVHFSAITGDGFKSLDEGQEVSFEVE 53
>gi|328908285|gb|EGG28044.1| cold-shock DNA-binding domain protein [Propionibacterium sp. P08]
Length = 127
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+
Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNALKPGQKVDFGIVEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L++V ++
Sbjct: 56 G--EQALSLQIVETPAS 70
>gi|240139725|ref|YP_002964202.1| putative transcriptional regulator, cold shock protein
[Methylobacterium extorquens AM1]
gi|254562138|ref|YP_003069233.1| transcriptional regulator, cold shock protein [Methylobacterium
extorquens DM4]
gi|240009699|gb|ACS40925.1| putative transcriptional regulator, cold shock protein
[Methylobacterium extorquens AM1]
gi|254269416|emb|CAX25382.1| putative transcriptional regulator, cold shock protein
[Methylobacterium extorquens DM4]
Length = 278
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWY+P KG+GF++ G DVF+HRSA++ AGL +L EGQ VT V+
Sbjct: 213 TGTVKWYDPAKGFGFVSVND---GGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 269
Query: 64 KYSAENLK 71
+ S+ ++
Sbjct: 270 EASSITVE 277
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q +
Sbjct: 81 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137
Query: 66 SAEN 69
+A N
Sbjct: 138 TAVN 141
>gi|218531150|ref|YP_002421966.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|218523453|gb|ACK84038.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
Length = 279
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWY+P KG+GF++ G DVF+HRSA++ AGL +L EGQ VT V+
Sbjct: 214 TGTVKWYDPAKGFGFVSVND---GGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 270
Query: 64 KYSAENLK 71
+ S+ ++
Sbjct: 271 EASSITVE 278
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q +
Sbjct: 81 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137
Query: 66 SAEN 69
+A N
Sbjct: 138 TAVN 141
>gi|163852391|ref|YP_001640434.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|163663996|gb|ABY31363.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
Length = 281
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWY+P KG+GF++ G DVF+HRSA++ AGL +L EGQ VT V+
Sbjct: 216 TGTVKWYDPAKGFGFVSVND---GGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 272
Query: 64 KYSAENLK 71
+ S+ ++
Sbjct: 273 EASSITVE 280
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q +
Sbjct: 81 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137
Query: 66 SAEN 69
+A N
Sbjct: 138 TAVN 141
>gi|124514284|gb|EAY55798.1| cold shock protein [Leptospirillum rubarum]
Length = 52
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
+ RG +KW+N +KGYGFI+ E G+D+F+H SA+ +G L EGQLV ++
Sbjct: 1 MARGHVKWFNANKGYGFISQEN----GEDIFVHYSAIGGSGFKTLEEGQLVEFEI 51
>gi|85709247|ref|ZP_01040312.1| Cold shock protein [Erythrobacter sp. NAP1]
gi|85687957|gb|EAQ27961.1| Cold shock protein [Erythrobacter sp. NAP1]
Length = 71
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+K++N DKGYGFI P+ D F+H SAV +AG+ L + Q + Y+ + N
Sbjct: 4 KTGSVKFFNADKGYGFIQPDD---GSADSFVHISAVQAAGMQTLDKEQRLNYEV-ETGRN 59
Query: 63 GKYSAENLK 71
GK SA NL
Sbjct: 60 GKESAVNLS 68
>gi|227535230|ref|ZP_03965279.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239631631|ref|ZP_04674662.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|227187114|gb|EEI67181.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239526096|gb|EEQ65097.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
Length = 73
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N DKGYGFI E D+F+H SA+ G +LT G+ V + V+
Sbjct: 2 QGRVKNFNVDKGYGFIEAE----GQPDIFVHFSAINEPGFKSLTPGETVDFVIVEGPRG- 56
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 57 -PQAANVTV 64
>gi|85001185|ref|XP_955311.1| cold shock protein [Theileria annulata strain Ankara]
gi|65303457|emb|CAI75835.1| cold shock protein, putative [Theileria annulata]
Length = 95
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G KW+N KGYGFIT E G+DVF+H+S + + G +L E + V + + ++
Sbjct: 5 NGVCKWFNNKKGYGFITLEN----GEDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRK 60
Query: 64 KYSAENLK 71
K A ++
Sbjct: 61 K--AIHVT 66
>gi|296273539|ref|YP_003656170.1| cold-shock DNA-binding domain-containing protein [Arcobacter
nitrofigilis DSM 7299]
gi|296097713|gb|ADG93663.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis
DSM 7299]
Length = 72
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
GS+KW+N +KG+GFI E G DVF+H + S G +L +GQ VT++ Q D
Sbjct: 6 NGSVKWFNSEKGFGFIEQEN---GGKDVFVHYRNINSTGYGRVSLEDGQKVTFEVAQGDK 62
Query: 62 NGKYSAENLK 71
AEN+
Sbjct: 63 G--LQAENVT 70
>gi|116494772|ref|YP_806506.1| cold shock protein [Lactobacillus casei ATCC 334]
gi|191638285|ref|YP_001987451.1| Cold-shock protein [Lactobacillus casei BL23]
gi|116104922|gb|ABJ70064.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
334]
gi|190712587|emb|CAQ66593.1| Cold-shock protein [Lactobacillus casei BL23]
gi|327385511|gb|AEA56985.1| Cold shock domain protein [Lactobacillus casei BD-II]
Length = 73
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N DKGYGFI E D+F+H SA+ G +LT G+ V + V+
Sbjct: 2 QGRVKNFNVDKGYGFIEAE----GQPDIFVHFSAINEPGFKSLTPGETVDFVIVEGPRG- 56
Query: 64 KYSAENLKL 72
A N+ +
Sbjct: 57 -PQAANVTV 64
>gi|162147665|ref|YP_001602126.1| cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
5]
gi|161786242|emb|CAP55824.1| Cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
5]
Length = 226
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ VQ
Sbjct: 162 RGVVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTEGQTANVQVVQGQKGP 218
Query: 64 KYSAENL 70
+ ++ ++
Sbjct: 219 EAASISV 225
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +KG+GF+ DVFLH +A+A++G +++ G + Q G+
Sbjct: 60 VKWFNSEKGFGFVELSD---GSGDVFLHANALATSGHDSVSPGTTLVVRIGQGPK-GRQV 115
Query: 67 AENLKL 72
A + +
Sbjct: 116 ASVVSV 121
>gi|331698444|ref|YP_004334683.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326953133|gb|AEA26830.1| cold-shock DNA-binding domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 315
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G+++W++ D+G+GF+ PE DVF+H S + G L EGQ V ++ +ND
Sbjct: 1 MPQGTVRWFDADRGFGFLAPED---GSPDVFVHASEIVGGGGAKALREGQAVVFEIGEND 57
Query: 61 ANGKYSAENLKLVPKSS 77
A +++ ++
Sbjct: 58 RG--PQALGVRVTADAA 72
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++ WY+ D+G+GFI P+ DVF+H A+ + GL L EG V Y+ +
Sbjct: 161 TVAWYDEDRGFGFIDPDS---GAGDVFVHARAL-AEGLTWLAEGDRVAYEVASGEKG--P 214
Query: 66 SAENLKLVPKS 76
A ++ LV +
Sbjct: 215 QARDVHLVRGA 225
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGF +P+G G D+F+H SA+ + G+ +TEGQ V + V +
Sbjct: 81 GTVNWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGV--VTEGQRVAFLIVDGERG-- 133
Query: 65 YSAENL 70
A ++
Sbjct: 134 PQAGHV 139
Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + Y+ D+G+GFITP+ GDD+F H S + G L +G V Y Q+D
Sbjct: 254 GVVARYDEDRGFGFITPD---AGGDDLFAHVSVIM--GSEPLQKGDRVRYAVRQSDRG-- 306
Query: 65 YSAENLKLV 73
A+ ++ +
Sbjct: 307 PQADRVERL 315
>gi|314982320|gb|EFT26413.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL110PA3]
gi|315092638|gb|EFT64614.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
HL110PA4]
Length = 127
Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ KG+GF+T + G DV+++ S + AG+ L GQ V + V+
Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASVL-PAGVNTLKPGQKVDFGIVEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L++V ++
Sbjct: 56 G--EQALSLQIVEAPAS 70
>gi|85715217|ref|ZP_01046200.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85697863|gb|EAQ35737.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 62
Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KGYGFI PE G DVF+H SAV AGL +L EG V+Y+ V N GK SA
Sbjct: 2 KWFNGQKGYGFIEPES---GGKDVFVHISAVERAGLGSLNEGDKVSYEVVTNH--GKESA 56
Query: 68 ENLKL 72
ENL++
Sbjct: 57 ENLRV 61
>gi|209542291|ref|YP_002274520.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529968|gb|ACI49905.1| cold-shock DNA-binding domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 204
Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ VQ
Sbjct: 140 RGVVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTEGQTANVQVVQGQKGP 196
Query: 64 KYSAENL 70
+ ++ ++
Sbjct: 197 EAASISV 203
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +KG+GF+ DVFLH +A+A++G +++ G + Q G+
Sbjct: 38 VKWFNSEKGFGFVELSD---GSGDVFLHANALATSGHDSVSPGTTLVVRIGQGPK-GRQV 93
Query: 67 AENLKL 72
A + +
Sbjct: 94 ASVVSV 99
>gi|123187095|gb|ABM69256.1| CspA-like protein [Arthrobacter sp. B5]
Length = 66
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ + D
Sbjct: 7 GTVKWFNEAKGFGFIAQDN---GGQDVFAHYSAIQGGGFKTLAEGQKVSF--ILGDGKKG 61
Query: 65 YSAEN 69
AE
Sbjct: 62 PQAEQ 66
>gi|73976711|ref|XP_848660.1| PREDICTED: similar to nuclease sensitive element binding protein 1
[Canis familiaris]
Length = 448
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 170 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 226
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 227 KG--AEAANVT 235
>gi|269121609|ref|YP_003309786.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC
33386]
gi|268615487|gb|ACZ09855.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC
33386]
Length = 65
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N KG+GFI+ E G+D FLH S + G ++ EG+ V ++ +
Sbjct: 2 QGKVKWFNDKKGFGFISGED----GNDYFLHFSKIEKDGFKSVNEGEEVIFEVEEGPKG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -PQATNV 62
>gi|296284922|ref|ZP_06862920.1| cold shock protein [Citromicrobium bathyomarinum JL354]
Length = 270
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K++N KG+GFI EG GDDVF+H SAV AGL L EGQ + ++ V D G
Sbjct: 103 KGQVKFFNGQKGFGFIQQEG---GGDDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 157
Query: 64 KYSAENLKLV 73
K SA++L++V
Sbjct: 158 KISAQDLQVV 167
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++K++N KG+GF+ + D F+H SAV +GL + EG+ +D + D
Sbjct: 202 ATGTVKFFNSMKGFGFLVRDD---GQPDAFVHISAVERSGLSQINEGERYEFDL-EVDRR 257
Query: 63 GKYSAENLKLVPK 75
GKYSA NL V +
Sbjct: 258 GKYSAVNLVPVQE 270
>gi|283851981|ref|ZP_06369257.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B]
gi|283572705|gb|EFC20689.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B]
Length = 68
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW++ KGYGFI E DDVF+H S++ G L EG++V ++ + +
Sbjct: 1 MGFEGTVKWFSDKKGYGFIMRE----GQDDVFVHYSSIEGEGFRTLREGEIVNFEIIDGE 56
Query: 61 ANGKYSAENL 70
K A N+
Sbjct: 57 RGPK--ATNV 64
>gi|330465294|ref|YP_004403037.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328808265|gb|AEB42437.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 128
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KGYGF+T + G DVFL ++A+ AG+ +L GQ + + V +
Sbjct: 1 MPTGRVKWYDATKGYGFVTSD----EGGDVFLPKAAL-PAGVTDLKGGQRIDFSVVDSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +KL+ +
Sbjct: 56 G--TQAMGVKLLEAPPS 70
>gi|188582398|ref|YP_001925843.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
gi|179345896|gb|ACB81308.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 268
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWY+P KG+GF++ G DVF+HRSA++ AGL +L EGQ VT V+
Sbjct: 203 TGTVKWYDPAKGFGFVSVND---GGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 259
Query: 64 KYSAENL 70
+ S+ +
Sbjct: 260 EASSITV 266
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q +
Sbjct: 78 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 134
Query: 66 SAEN 69
+A N
Sbjct: 135 TAVN 138
>gi|67458654|ref|YP_246278.1| cold shock-like protein [Rickettsia felis URRWXCal2]
gi|75536880|sp|Q4UMU5|CSPA_RICFE RecName: Full=Cold shock-like protein CspA
gi|67004187|gb|AAY61113.1| Cold shock-like protein [Rickettsia felis URRWXCal2]
Length = 70
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 2 VHR---GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D +
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQEN---GGKDVFVHKSAVDAAGLHSLEEGQYVIFDLEE 57
Query: 59 NDANGKYSAENLKL 72
GK A NL++
Sbjct: 58 --KQGKAYAVNLRI 69
>gi|323343048|ref|ZP_08083279.1| CspA family cold shock transcriptional regulator [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463112|gb|EFY08307.1| CspA family cold shock transcriptional regulator [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 66
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N DKG+GFI + SG ++F+H S + S G L +G +VT+D +
Sbjct: 1 MESGKVKFFNADKGFGFIITD----SGKEIFVHYSGIISDGFKTLNDGDVVTFDIESDTR 56
Query: 62 NGKYSAENLKL 72
K A N+K+
Sbjct: 57 GDK--AINVKV 65
>gi|254994694|ref|ZP_05276884.1| cold shock protein (cspA) [Anaplasma marginale str. Mississippi]
gi|255002811|ref|ZP_05277775.1| cold shock protein (cspA) [Anaplasma marginale str. Puerto Rico]
gi|255003942|ref|ZP_05278743.1| cold shock protein (cspA) [Anaplasma marginale str. Virginia]
Length = 91
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGST----------ESGDDVFLHRSAVASAGLFNLTEGQLV 52
+ G +KW++ +KGYGFI +GS DVF+H +++ + + NL EGQ V
Sbjct: 11 YTGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRV 70
Query: 53 TYDYVQNDANGKYSAENLKLVPK 75
Y +++NGK SA NL+++ +
Sbjct: 71 RYQL--DESNGKVSAVNLEVLSE 91
>gi|158425669|ref|YP_001526961.1| cold shock protein [Azorhizobium caulinodans ORS 571]
gi|158332558|dbj|BAF90043.1| cold shock protein [Azorhizobium caulinodans ORS 571]
Length = 237
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KWYNP+KG+GFI EG G DVF+H + V+ +GL +L+EGQ V Q +
Sbjct: 173 GTVKWYNPEKGFGFIAVEG---GGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQGPKGPE 229
Query: 65 YSAENL 70
+
Sbjct: 230 ARGIEV 235
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+NP+KG+GF+ DVFLH A+ +AG ++ G ++ Q
Sbjct: 69 TVKWFNPEKGFGFVELSD---GSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQKG 122
>gi|296201419|ref|XP_002748032.1| PREDICTED: Y-box-binding protein 2-like [Callithrix jacchus]
Length = 390
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 103 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 159
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 160 KG--AEAANVT 168
>gi|307107809|gb|EFN56051.1| hypothetical protein CHLNCDRAFT_145510 [Chlorella variabilis]
Length = 139
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 9/69 (13%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW GYGFITP+ G+D+F+H++A+ S G +L EG+ V + +V+ +
Sbjct: 6 ATGTVKW-----GYGFITPDS---GGEDLFVHQTAIVSEGFRSLREGEPVEF-FVETSDD 56
Query: 63 GKYSAENLK 71
G+ A N+
Sbjct: 57 GRQKAVNVT 65
>gi|289705444|ref|ZP_06501838.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
gi|289557829|gb|EFD51126.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
Length = 130
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IK+Y+ KG+GF + G++V + SA+ AG+ L G V + +
Sbjct: 4 MPTGRIKFYDSTKGFGFAQTD----EGEEVHVPASAL-PAGVTELRGGTRVEFGVAEGRR 58
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ + +
Sbjct: 59 GK--QALSLRVLDAAPS 73
>gi|156972845|ref|YP_001443752.1| cold shock protein [Vibrio harveyi ATCC BAA-1116]
gi|156524439|gb|ABU69525.1| hypothetical protein VIBHAR_00522 [Vibrio harveyi ATCC BAA-1116]
Length = 69
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI S +G+D+F+H + G L EG V++ +
Sbjct: 7 GTVKWFNEAKGFGFI----SQANGNDLFVHFRNILGDGFKKLIEGDQVSFTVGKGPKG-- 60
Query: 65 YSAENLKLV 73
AEN+ +
Sbjct: 61 LQAENVTTI 69
>gi|170740501|ref|YP_001769156.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. 4-46]
gi|168194775|gb|ACA16722.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 242
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KWY+P KG+GF++ + G DVF+HRSA+A AGL +L EGQ VT V+ +
Sbjct: 178 GTVKWYDPAKGFGFVSVKD---GGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKGRE 234
Query: 65 YSAENL 70
+ +
Sbjct: 235 AQSITV 240
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +KG+GF+ D FLH AV +AG +L G +T Q
Sbjct: 65 TVKWFNKEKGFGFVELGD---GSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQGQKG--P 119
Query: 66 SAENLKLVPKSS 77
N+ V S+
Sbjct: 120 QVTNITSVDTST 131
>gi|229526567|ref|ZP_04415971.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
gi|229336725|gb|EEO01743.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
Length = 72
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
GS+KW+N KG+GFITP+ G DVF+H +++AS G+ L E Q V + Q
Sbjct: 8 TGSVKWFNESKGFGFITPDS---GGSDVFVHFNSIASGGVKTLFEVQKVNFSIEQGSKG- 63
Query: 64 KYSAENL 70
A N+
Sbjct: 64 -LQAVNV 69
>gi|52843046|ref|YP_096845.1| cold shock transcriptional regulator CspA [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52630157|gb|AAU28898.1| cold shock transcriptional regulator CspA [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 71
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N DKGYGFI+ + DDVF+H ++ ++AG L EGQ V + +
Sbjct: 5 ETGHVKWFNDDKGYGFISRDN---GQDDVFVHFRSIVSNAGRKTLLEGQRVEFLVTKGAK 61
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 62 G--LQAEEVTAI 71
>gi|330948982|gb|EGH49242.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 54
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++
Sbjct: 6 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 54
>gi|195327031|ref|XP_002030225.1| GM24682 [Drosophila sechellia]
gi|194119168|gb|EDW41211.1| GM24682 [Drosophila sechellia]
Length = 1378
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 63 TGTVKWFNVKSGYGFINRNDTR---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 120 EKGNE--AANVT 129
>gi|116669355|ref|YP_830288.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
FB24]
gi|116609464|gb|ABK02188.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
Length = 127
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ E G +VFL +SA+ G+ L G V +
Sbjct: 1 MPTGKVKWYDKEKGFGFLAGED----GQEVFLPKSAL-PEGVTELKAGTRVEFGVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L+++ K+ +
Sbjct: 56 G--AQALGLRVLDKTPS 70
>gi|15596158|ref|NP_249652.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|218893068|ref|YP_002441937.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
gi|254239310|ref|ZP_04932633.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719]
gi|9946868|gb|AAG04350.1|AE004530_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
gi|126171241|gb|EAZ56752.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719]
gi|218773296|emb|CAW29108.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
Length = 63
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D A
Sbjct: 2 KWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDKG--LQA 55
Query: 68 ENL 70
E++
Sbjct: 56 EDV 58
>gi|52842335|ref|YP_096134.1| cold shock DNA binding domain-containing protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|54297985|ref|YP_124354.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris]
gi|148359631|ref|YP_001250838.1| cold shock DNA binding domain-containing protein [Legionella
pneumophila str. Corby]
gi|296107674|ref|YP_003619375.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
gi|52629446|gb|AAU28187.1| cold shock DNA binding domain protein [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53751770|emb|CAH13193.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris]
gi|148281404|gb|ABQ55492.1| cold shock DNA binding domain protein [Legionella pneumophila
str. Corby]
gi|295649576|gb|ADG25423.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
Length = 69
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E G DVF H ++S+G LTEGQ V + Q
Sbjct: 6 NGVVKWFNEIKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60
Query: 64 KYSAENLKLV 73
A+N+ +
Sbjct: 61 -LQAQNITAL 69
>gi|268316772|ref|YP_003290491.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
marinus DSM 4252]
gi|262334306|gb|ACY48103.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
4252]
Length = 70
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
+ +G++KW++ +KGYGFI +G G+DVF+HR+AVA G L +G+ ++++ +
Sbjct: 1 MSQGTVKWFSAEKGYGFIQQDG---GGEDVFVHRTAVAGLGYGEELRKGERLSFEIRRTP 57
Query: 61 ANGKYSAENLKLVP 74
A N+K +
Sbjct: 58 KG--LQAVNVKRLD 69
>gi|325286936|ref|YP_004262726.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324322390|gb|ADY29855.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
7489]
Length = 63
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFITP+ G DVF+H S + + EG V+YD +
Sbjct: 1 MSNGTVKFFNDSKGFGFITPDD---GGKDVFVHISGLTHE----IAEGDKVSYDVEEGKK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--PNAVNVEVL 63
>gi|160914514|ref|ZP_02076729.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991]
gi|158433672|gb|EDP11961.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991]
Length = 65
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N +KG+GFI E D+F+H S + G +L EG+ V ++ +++
Sbjct: 2 TGNVKWFNAEKGFGFIRTE----EEKDIFVHYSQIVQDGYKSLNEGEAVRFEIFESEKG- 56
Query: 64 KYSAENLK 71
A+N++
Sbjct: 57 -LQAKNVE 63
>gi|270159744|ref|ZP_06188400.1| cold shock protein CspC [Legionella longbeachae D-4968]
gi|289165485|ref|YP_003455623.1| DNA-binding transcriptional repressor [Legionella longbeachae
NSW150]
gi|269988083|gb|EEZ94338.1| cold shock protein CspC [Legionella longbeachae D-4968]
gi|288858658|emb|CBJ12553.1| DNA-binding transcriptional repressor [Legionella longbeachae
NSW150]
Length = 69
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG+GFI E G DVF H +AS+G LTEGQ V + Q
Sbjct: 6 NGVVKWFNETKGFGFIEQE----CGPDVFAHFKEIASSGFRTLTEGQRVKFIVTQGAKG- 60
Query: 64 KYSAENL 70
A+N+
Sbjct: 61 -LQAQNI 66
>gi|729219|sp|P41018|CSPB_BACGO RecName: Full=Cold shock protein CspB
gi|456240|emb|CAA51791.1| major cold shock protein (CspB) [Sporosarcina globispora]
gi|740005|prf||2004289B cold shock protein
Length = 57
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
IKW+N +KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 IKWFNSEKGFGFIEVE----GQDDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGNRG--PQ 54
Query: 67 AEN 69
A N
Sbjct: 55 AAN 57
>gi|56416469|ref|YP_153543.1| cold shock protein [Anaplasma marginale str. St. Maries]
gi|222474838|ref|YP_002563253.1| cold shock protein (cspA) [Anaplasma marginale str. Florida]
gi|269959118|ref|YP_003328907.1| putative cold-shock protein [Anaplasma centrale str. Israel]
gi|56387701|gb|AAV86288.1| cold shock protein [Anaplasma marginale str. St. Maries]
gi|222418974|gb|ACM48997.1| cold shock protein (cspA) [Anaplasma marginale str. Florida]
gi|269848949|gb|ACZ49593.1| putative cold-shock protein [Anaplasma centrale str. Israel]
Length = 92
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGST----------ESGDDVFLHRSAVASAGLFNLTEGQLV 52
+ G +KW++ +KGYGFI +GS DVF+H +++ + + NL EGQ V
Sbjct: 12 YTGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRV 71
Query: 53 TYDYVQNDANGKYSAENLKLVPK 75
Y +++NGK SA NL+++ +
Sbjct: 72 RYQL--DESNGKVSAVNLEVLSE 92
>gi|54295674|ref|YP_128089.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens]
gi|296108496|ref|YP_003620197.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99
Alcoy]
gi|53755506|emb|CAH17005.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens]
gi|295650398|gb|ADG26245.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99
Alcoy]
gi|307611722|emb|CBX01423.1| hypothetical protein LPW_31131 [Legionella pneumophila 130b]
Length = 71
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N DKGYGFI+ + DDVF+H ++ +SAG L EGQ V + +
Sbjct: 5 ETGHVKWFNDDKGYGFISRDN---GQDDVFVHFRSIVSSAGRKTLLEGQRVEFLVTKGAK 61
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 62 G--LQAEEVTAI 71
>gi|294787495|ref|ZP_06752748.1| cold-shock domain family protein [Parascardovia denticolens
F0305]
gi|315226929|ref|ZP_07868717.1| cold-shock domain family protein [Parascardovia denticolens DSM
10105]
gi|294484851|gb|EFG32486.1| cold-shock domain family protein [Parascardovia denticolens
F0305]
gi|315121061|gb|EFT84193.1| cold-shock domain family protein [Parascardovia denticolens DSM
10105]
Length = 129
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I+W++ KGYGFIT + G+DVF+ ++A+ AG+ L +G V + V +
Sbjct: 1 MPAGEIRWFDAKKGYGFITSDD----GEDVFMPKTAL-PAGVTTLRKGAKVEFSRVDSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ ++ + +
Sbjct: 56 G--PQAMDVVVLGPTPS 70
>gi|113460999|ref|YP_719066.1| cold-shock DNA-binding protein family protein [Haemophilus somnus
129PT]
gi|170717567|ref|YP_001784653.1| cold-shock DNA-binding domain-containing protein [Haemophilus
somnus 2336]
gi|112823042|gb|ABI25131.1| cold-shock DNA-binding protein family [Haemophilus somnus 129PT]
gi|168825696|gb|ACA31067.1| putative cold-shock DNA-binding domain protein [Haemophilus
somnus 2336]
Length = 69
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GF++ E S DVF H S + G +L GQ V + V D
Sbjct: 1 MEVGIVKWFNNAKGFGFLSVESSDV---DVFAHYSVIEMEGYRSLKAGQKVQCEVVHGDK 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|317154064|ref|YP_004122112.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316944315|gb|ADU63366.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 76
Score = 74.7 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G + W+N KG+GFIT + G DVF+H + + G +L G+ V+Y +
Sbjct: 1 MRREGKVTWFNDKKGFGFITGDD----GLDVFVHYTEIVRDGFQSLEPGERVSYAVTDEE 56
Query: 61 ANGKYSAENLKLVPKSS 77
A ++ L + +
Sbjct: 57 --IAPKAVDVHLADEGA 71
>gi|154244150|ref|YP_001415108.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154158235|gb|ABS65451.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 241
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KWYNPDKG+GFI EG G DVF+H + ++ +GL +L EGQ V Q
Sbjct: 177 GTVKWYNPDKGFGFIAVEG---GGKDVFVHVTVISRSGLTDLAEGQRVVVQVGQGPKGP 232
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+NP+KG+GF+ DVFLH A+ +AG ++ G ++ Q
Sbjct: 68 TVKWFNPEKGFGFVELAD---GSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQKG 121
>gi|15892944|ref|NP_360658.1| cold shock-like protein [Rickettsia conorii str. Malish 7]
gi|34581356|ref|ZP_00142836.1| cold shock-like protein [Rickettsia sibirica 246]
gi|157828875|ref|YP_001495117.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933601|ref|YP_001650390.1| cold shock protein [Rickettsia rickettsii str. Iowa]
gi|229587023|ref|YP_002845524.1| Cold shock-like protein [Rickettsia africae ESF-5]
gi|238650987|ref|YP_002916843.1| cold shock protein [Rickettsia peacockii str. Rustic]
gi|22256739|sp|Q92GV1|CSPA_RICCN RecName: Full=Cold shock-like protein CspA
gi|15620137|gb|AAL03559.1| cold shock-like protein [Rickettsia conorii str. Malish 7]
gi|28262741|gb|EAA26245.1| cold shock-like protein [Rickettsia sibirica 246]
gi|157801356|gb|ABV76609.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908688|gb|ABY72984.1| cold shock protein [Rickettsia rickettsii str. Iowa]
gi|228022073|gb|ACP53781.1| Cold shock-like protein [Rickettsia africae ESF-5]
gi|238625085|gb|ACR47791.1| cold shock protein [Rickettsia peacockii str. Rustic]
Length = 70
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 2 VHR---GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G +KWYN K +GFI + G DVF+H+SAV +AGL +L EGQ V +D +
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDN---GGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE 57
Query: 59 NDANGKYSAENLKL 72
GK A NL++
Sbjct: 58 --KQGKAYAVNLRI 69
>gi|62421414|gb|AAX82482.1| cold shock protein [Bacillus thuringiensis serovar kurstaki]
Length = 60
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
K +N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + A
Sbjct: 3 KRFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRG--PQA 56
Query: 68 ENLK 71
N+
Sbjct: 57 ANVT 60
>gi|54298841|ref|YP_125210.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris]
gi|53752626|emb|CAH14061.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris]
Length = 71
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N DKGYGFI+ + DDVF+H ++ +SAG L EGQ V + +
Sbjct: 5 ETGHVKWFNDDKGYGFISRDN---GQDDVFVHFRSIVSSAGRKTLVEGQRVEFLVTKGAK 61
Query: 62 NGKYSAENLKLV 73
AE + +
Sbjct: 62 G--LQAEEVTAI 71
>gi|296128606|ref|YP_003635856.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
gi|296020421|gb|ADG73657.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
Length = 127
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ ++G+GFI + G +VFLH SA+ AG+ G V +
Sbjct: 1 MPTGKVKWFDTERGFGFIADD----EGGEVFLHASAL-PAGVTAPKPGTKVEFGVADGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ + +
Sbjct: 56 G--PQALSVTFLDPVPS 70
>gi|239916954|ref|YP_002956512.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
2665]
gi|281414588|ref|ZP_06246330.1| cold shock protein [Micrococcus luteus NCTC 2665]
gi|239838161|gb|ACS29958.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
2665]
Length = 127
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IK+Y+ KG+GF + G++V + SA+ AG+ L G V + +
Sbjct: 1 MPTGRIKFYDSTKGFGFAQTD----EGEEVHVPASAL-PAGVTELRGGTRVEFGVAEGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +L+++ + +
Sbjct: 56 GK--QALSLRVLDAAPS 70
>gi|270156922|ref|ZP_06185579.1| cold shock protein [Legionella longbeachae D-4968]
gi|289164651|ref|YP_003454789.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150]
gi|269988947|gb|EEZ95201.1| cold shock protein [Legionella longbeachae D-4968]
gi|288857824|emb|CBJ11670.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150]
Length = 71
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KG+GFI E GDD+F+H + G L E V++ +
Sbjct: 4 RETGHVKWFNEKKGFGFIINEN----GDDIFVHYKDIQGVGFKTLHENDPVSFVLDKGPK 59
Query: 62 NGKYSAENLKLVPK 75
A+++ ++ +
Sbjct: 60 G--LKAQDVTIITE 71
>gi|227504265|ref|ZP_03934314.1| cold shock protein [Corynebacterium striatum ATCC 6940]
gi|227199152|gb|EEI79200.1| cold shock protein [Corynebacterium striatum ATCC 6940]
Length = 126
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF+ S +DV++ R+ + G+ L +GQ + +D+
Sbjct: 1 MPIGKVKWFDADKGFGFV----SNPGDEDVYVGRNVL-PEGVDELVQGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRVKVLDS 67
>gi|224095946|ref|XP_002188961.1| PREDICTED: Rous sarcoma virus transcription enhancer factor II
[Taeniopygia guttata]
Length = 420
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 213 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 269
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 270 KG--AEAANVT 278
>gi|225023129|ref|ZP_03712321.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii
ATCC 33806]
gi|305681903|ref|ZP_07404707.1| cold-shock DNA-binding domain protein [Corynebacterium
matruchotii ATCC 14266]
gi|224944352|gb|EEG25561.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii
ATCC 33806]
gi|305658376|gb|EFM47879.1| cold-shock DNA-binding domain protein [Corynebacterium
matruchotii ATCC 14266]
Length = 132
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PD+G+GFI S G+D ++ +S + G+ L GQ V +D+
Sbjct: 1 MPIGKVKWYDPDRGFGFI----SNPDGEDCYVGKSVLPH-GVTELHRGQRVDFDFASGAR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++ +
Sbjct: 56 G--PQALRVKILDE 67
>gi|222109154|ref|YP_002551419.1| CspA-like protein [Agrobacterium vitis S4]
gi|221738428|gb|ACM39293.1| CspA-like protein [Agrobacterium vitis S4]
Length = 99
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KGYGFIT + G DVFLH S V A L L G + Y V
Sbjct: 1 MPTGKLKWFDTTKGYGFITSDD---GGPDVFLHLSKVTEANLPTLQPGVRLRY--VLGRQ 55
Query: 62 NGKYSAENLKLVPKSS 77
K SA +L L+P +
Sbjct: 56 GNKVSAHDLSLMPDEA 71
>gi|188575644|ref|YP_001912573.1| hypothetical protein PXO_04812 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188520096|gb|ACD58041.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 61
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFI+ E G+DVF+H A+ G +L EGQ V++ VQ + A
Sbjct: 2 KWFNDAKGFGFISREN----GEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKGLQADA 57
Query: 68 ENL 70
+
Sbjct: 58 VQV 60
>gi|238062313|ref|ZP_04607022.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
gi|237884124|gb|EEP72952.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
Length = 128
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KGYGF+T + G DVFL + A+ AG+ +L GQ V + V +
Sbjct: 1 MPTGRVKWYDAAKGYGFVTSD----EGGDVFLPKGAL-PAGVTDLKGGQRVDFSVVDSRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +KL+ +
Sbjct: 56 G--AQAMGVKLLEAPPS 70
>gi|254282751|ref|ZP_04957719.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium
NOR51-B]
gi|219678954|gb|EED35303.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium
NOR51-B]
Length = 123
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+GSIKW+N KG+GFIT + G++VF+H V + GQ V Y + +
Sbjct: 59 TKGSIKWFNATKGFGFITGDD----GNEVFVHFRNVEQLSKREIKPGQRVAYRVTETERG 114
Query: 63 GKYSAENLKLV 73
AE++ +
Sbjct: 115 --PQAEDVSPL 123
>gi|320094620|ref|ZP_08026384.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178
str. F0338]
gi|319978456|gb|EFW10035.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178
str. F0338]
Length = 125
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++++P++G+GFIT + G VFLH SA+ + G + G V Y
Sbjct: 1 MPTGRVRFFDPERGFGFITGDD----GSQVFLHSSALPAGG-AHPRAGARVEYSVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++++V ++ +
Sbjct: 56 G--PQALSVRVVAEAPS 70
>gi|187478817|ref|YP_786841.1| cold shock protein [Bordetella avium 197N]
gi|115423403|emb|CAJ49937.1| cold shock protein [Bordetella avium 197N]
Length = 69
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KG+GFI PE G D+F H S + G +L E Q V++ V+
Sbjct: 4 ETGVVKWFNSEKGFGFIAPES---GGKDLFAHFSEIVGTGFKSLEENQRVSF--VEGMGP 58
Query: 63 GKYSAENLKLV 73
A ++++
Sbjct: 59 KGPCATKIEVI 69
>gi|157738090|ref|YP_001490774.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018]
gi|315636444|ref|ZP_07891687.1| cold shock protein CspA [Arcobacter butzleri JV22]
gi|157699944|gb|ABV68104.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018]
gi|315479272|gb|EFU69962.1| cold shock protein CspA [Arcobacter butzleri JV22]
Length = 72
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDAN 62
G++KW+N +KG+GFI E + F+H S + S+ G L +GQ V+++ +ND
Sbjct: 7 GTVKWFNSEKGFGFIQLEN---EDQEFFVHHSEINSSNYGRATLNDGQKVSFEIGKNDKG 63
Query: 63 GKYSAENLKLV 73
A+N++ +
Sbjct: 64 --PQAKNVRAI 72
>gi|254504340|ref|ZP_05116491.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222440411|gb|EEE47090.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 70
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+IK++N D+G+GFITPE G DVF+H +A AG+ EG V++ +
Sbjct: 1 MRENGTIKFFNHDRGFGFITPEN---GGKDVFVHVTAFEQAGIGTPVEGAKVSFVAEDDR 57
Query: 61 ANGKYSAENLKLV 73
A L+L+
Sbjct: 58 RGRGKQAAQLELL 70
>gi|52841294|ref|YP_095093.1| cold shock domain-contain protein [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52628405|gb|AAU27146.1| cold shock domain family protein [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 87
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + +
Sbjct: 20 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKG- 73
Query: 64 KYSAENLKLVP 74
AE ++++
Sbjct: 74 -PQAEEVEVIK 83
>gi|158296117|ref|XP_316618.3| AGAP006591-PA [Anopheles gambiae str. PEST]
gi|157016359|gb|EAA11383.3| AGAP006591-PA [Anopheles gambiae str. PEST]
Length = 182
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW+N KG+GFITP+ G +VF+H+S + G +L E + V ++ +
Sbjct: 43 RGRCKWFNVVKGWGFITPDD---GGQEVFVHQSVIQMGGFRSLGENEEVEFESKLSAKG 98
>gi|49082320|gb|AAT50560.1| PA0961 [synthetic construct]
Length = 64
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D A
Sbjct: 2 KWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDKG--LQA 55
Query: 68 ENL 70
E++
Sbjct: 56 EDV 58
>gi|61217666|sp|Q9Z2C8|YBOX2_MOUSE RecName: Full=Y-box-binding protein 2; AltName: Full=FRGY2 homolog;
AltName: Full=Germ cell-specific Y-box-binding protein
gi|4071321|gb|AAC98673.1| Y-box protein MSY2 [Mus musculus]
Length = 360
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 155 KGAR--AANVT 163
>gi|114615287|ref|XP_510011.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
Length = 379
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT---EGQLVTYDYVQNDA 61
G++KW+N GYGFI + +DVF+ ++A+ + L +G+ V +D V+ +
Sbjct: 117 GTVKWFNVRNGYGFINRNDTK---EDVFVPQTAIKNNPRKYLRSVGDGETVEFDVVEGEK 173
Query: 62 NGKYSAENLK 71
+ A N+
Sbjct: 174 D--AEAANVT 181
>gi|68171539|ref|ZP_00544918.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str.
Sapulpa]
gi|88658217|ref|YP_507119.1| CSD family cold shock protein [Ehrlichia chaffeensis str.
Arkansas]
gi|67999044|gb|EAM85716.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str.
Sapulpa]
gi|88599674|gb|ABD45143.1| cold shock protein, CSD family [Ehrlichia chaffeensis str.
Arkansas]
Length = 88
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 3 HRGSIKWYNPDKGYGFITPE-------GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
+ G +KW++ +KGYGFI + + D+F+H +A+ + + L EGQ V Y
Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQ 70
Query: 56 YVQNDANGKYSAENLKLVP 74
+ NGK+SA NL+L+
Sbjct: 71 L--DKNNGKFSAVNLELLE 87
>gi|332266403|ref|XP_003282197.1| PREDICTED: y-box-binding protein 2-like [Nomascus leucogenys]
Length = 430
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 169 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 225
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 226 KG--AEAANVT 234
>gi|257866254|ref|ZP_05645907.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30]
gi|257873232|ref|ZP_05652885.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10]
gi|257800212|gb|EEV29240.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30]
gi|257807396|gb|EEV36218.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10]
Length = 66
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KGYGF++ E G D+F+H S++ G NL EGQ V Y +N+
Sbjct: 1 MQNGTVKWFNSEKGYGFVSGED----GQDIFVHFSSIVGEGYRNLEEGQSVVYKIGENEK 56
Query: 62 NGKYSAENLKL 72
A N+ +
Sbjct: 57 GK--VATNVVI 65
>gi|301784071|ref|XP_002927454.1| PREDICTED: hypothetical protein LOC100472801 [Ailuropoda
melanoleuca]
Length = 371
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 62 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 119 KG--AEAANVT 127
>gi|297580126|ref|ZP_06942053.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297535772|gb|EFH74606.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 70
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS+KW+N KG+GF++ + GDDVF+H +++ S G L EGQ V+Y +
Sbjct: 7 GSVKWFNETKGFGFLSQDN---GGDDVFVHFNSIVSTGFKTLAEGQKVSYLVEKGKKG-- 61
Query: 65 YSAENLKLV 73
A + ++
Sbjct: 62 LQAAEVTVL 70
>gi|148688938|gb|EDL20885.1| cold shock domain protein A, isoform CRA_a [Mus musculus]
Length = 405
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 129 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 185
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 186 KG--AEAANVT 194
>gi|239980769|ref|ZP_04703293.1| cold-shock domain-containing protein [Streptomyces albus J1074]
gi|291452626|ref|ZP_06592016.1| cold-shock domain-containing protein [Streptomyces albus J1074]
gi|291355575|gb|EFE82477.1| cold-shock domain-containing protein [Streptomyces albus J1074]
Length = 67
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++P +G+GFIT +G G DVF H S +A+ L EGQ VT+D V +
Sbjct: 1 MASGTVKWFHPARGFGFITQDG---GGADVFAHFSNIAAQDSLELLEGQKVTFDIVMSPK 57
Query: 62 NGKYSAENL 70
+AEN+
Sbjct: 58 G--PTAENI 64
>gi|320095150|ref|ZP_08026858.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977932|gb|EFW09567.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178
str. F0338]
Length = 69
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
+ G +KW+N KG+GFI P+ T DVF+H S++ +G L EG V Y V+
Sbjct: 1 MASGHVKWFNDAKGFGFIIPDDQTG---DVFVHFSSIVGQSGRRTLQEGDKVDYVAVEGP 57
Query: 61 ANGKYSAENLKLV 73
AE + V
Sbjct: 58 RG--LHAEEVSRV 68
>gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4]
gi|319438269|gb|EFV93216.1| CspB [Dietzia cinnamea P4]
Length = 133
Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF++ E G+DV++ A+ AG+ L Q V +D V
Sbjct: 1 MPSGKVKWYDAEKGFGFLSQE----GGEDVYVRADAL-PAGVETLRPRQRVEFDMVSGRR 55
Query: 62 NGKYSAENLKL 72
A + +
Sbjct: 56 G--PQALRVVI 64
>gi|126335948|ref|XP_001376438.1| PREDICTED: similar to Nsep1 protein [Monodelphis domestica]
Length = 290
Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 19 GTVKWFNVRNGYGFINRDDTK---EDVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGE 75
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 76 KG--VEAANVT 84
>gi|119963261|ref|YP_946802.1| cold shock protein [Arthrobacter aurescens TC1]
gi|119950120|gb|ABM09031.1| putative cold shock protein [Arthrobacter aurescens TC1]
Length = 127
Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ E G +VFL ++++ AG+ L G V +
Sbjct: 1 MPTGKVKWYDKEKGFGFLAAED----GQEVFLPKTSL-PAGVTELKAGTRVEFGVADGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L+++ K+ +
Sbjct: 56 G--AQALGLRVLEKTPS 70
>gi|189054669|dbj|BAG37519.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 96 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 153 KG--AEATNVT 161
>gi|296128179|ref|YP_003635429.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
gi|296019994|gb|ADG73230.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
20109]
Length = 418
Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY+ +KG+GF+ P+ G+DVF H ++ GL L EG VT+D V +
Sbjct: 158 GTVTWYDAEKGFGFVAPDD---GGEDVFAHAKSLVG-GLSELVEGDRVTFDVVDGEKG-- 211
Query: 65 YSAENLKLVPKSS 77
A +++LV +
Sbjct: 212 PQARDIRLVGGAP 224
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ + +++W++ ++G+GF+ +D+F+H S + L EGQ V Y+ + D
Sbjct: 1 MPQATVRWFDAERGFGFLALGD---DAEDLFVHASEIIGEP-RVLREGQEVEYELGEGDR 56
Query: 62 NGKYSAENLKL 72
A +++
Sbjct: 57 G--PQARKVRV 65
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ Y+ D+G+GFI P+ GDD+F+H S V L EG V Y+ Q+D
Sbjct: 251 GTVARYDADRGFGFIRPD---AGGDDLFVHVSVVRGD--EPLEEGDRVRYEVRQSDRG-- 303
Query: 65 YSAENLKLV 73
A+ ++LV
Sbjct: 304 PQADRVELV 312
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGF+TP+G G ++F+H SAV G+ L +GQ V + V +
Sbjct: 79 GTVSWYEPAKGYGFLTPDG---GGAEIFVHSSAVVGGGV--LHDGQRVAFLVVDGEKG-- 131
Query: 65 YSAENL 70
A++L
Sbjct: 132 PQADHL 137
>gi|154253414|ref|YP_001414238.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157364|gb|ABS64581.1| putative cold-shock DNA-binding domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 199
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI PE GDDV +H S + AGL L EG VT + V+
Sbjct: 39 TGVVKWFDAVKGYGFIIPEN---GGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPKG- 94
Query: 64 KYSAENLKLVPKSS 77
A + V ++
Sbjct: 95 -AQAIRVVDVDDTT 107
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N +GYGF+T E D+F+H + G+ +L GQ + + +
Sbjct: 137 IVKWFNRARGYGFVTR---GEGTPDIFIHMETLRRYGIRDLLPGQQINVRFGEGPKG 190
>gi|114666139|ref|XP_511973.2| PREDICTED: y-box-binding protein 2 [Pan troglodytes]
Length = 365
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 97 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 154 KG--AEATNVT 162
>gi|239946656|ref|ZP_04698409.1| conserved domain protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920932|gb|EER20956.1| conserved domain protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 70
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 2 VHR---GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D +
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQEN---GGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE 57
Query: 59 NDANGKYSAENLKL 72
GK A NL++
Sbjct: 58 --KQGKAYAVNLRI 69
>gi|238765641|ref|ZP_04626525.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
gi|238696140|gb|EEP88973.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
Length = 57
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G +KW+N DKG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFNADKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIE 56
>gi|311268286|ref|XP_003131986.1| PREDICTED: y-box-binding protein 2-like [Sus scrofa]
Length = 394
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 155 KG--AEAANVT 163
>gi|24658520|ref|NP_647983.1| lin-28 [Drosophila melanogaster]
gi|75027386|sp|Q9VRN5|LIN28_DROME RecName: Full=Protein lin-28 homolog
gi|21842295|gb|AAM77748.1|AF521096_1 RNA-binding protein LIN-28 [Drosophila melanogaster]
gi|21392070|gb|AAM48389.1| RE05342p [Drosophila melanogaster]
gi|23094110|gb|AAF50758.2| lin-28 [Drosophila melanogaster]
gi|220947728|gb|ACL86407.1| lin-28-PA [synthetic construct]
gi|220957108|gb|ACL91097.1| lin-28-PA [synthetic construct]
Length = 195
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G KW+N KG+GF+TP G +VF+H+S + +G +L E + V ++ +
Sbjct: 41 GKCKWFNVAKGWGFLTPND---GGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG-- 95
Query: 65 YSAENLK 71
A +
Sbjct: 96 LEATRVS 102
>gi|118589651|ref|ZP_01547056.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM
12614]
gi|118437737|gb|EAV44373.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM
12614]
Length = 66
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ +G G I P + G+D+ + SA+ +G+ LTEGQLV +D
Sbjct: 1 MLHGNVKWFDNRRGIGTIEP----QDGEDILVDISALRRSGIDTLTEGQLVAFDLEW--R 54
Query: 62 NGKYSAENLKLV 73
G+ AE+LK++
Sbjct: 55 RGQMVAEDLKVL 66
>gi|296394984|ref|YP_003659868.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296182131|gb|ADG99037.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
44985]
Length = 77
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++W++P+KG+GFI P+ +VF+ +A+ +G L E Q V ++
Sbjct: 1 MALGTVQWFDPEKGFGFIAPDD---GSAEVFVRYTAIEGSGFRKLVENQKVEFETALVGK 57
Query: 62 N 62
+
Sbjct: 58 D 58
>gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter
sp. HTCC2649]
gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter
sp. HTCC2649]
Length = 314
Score = 73.9 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
+ G+++W++ D+G+GFI + +D+++H S + ++ + L EGQ+V ++ + D
Sbjct: 1 MTEGTVRWFDTDRGFGFIA---LGQDAEDLYVHASEIVSADAMKVLREGQVVEFEVGEGD 57
Query: 61 ANGKYSAENLKL 72
A +++
Sbjct: 58 RG--PQARRVRV 67
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY+ KG+GFIT + G DVF+H + + GL L EG VTYD V ++
Sbjct: 158 GTVSWYDGGKGFGFITSDS---GGPDVFVHVREL-ADGLTELGEGDRVTYDVVVSEKG-- 211
Query: 65 YSAENLKL 72
A +++L
Sbjct: 212 PQARDVRL 219
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGFITP+G G ++F+H SA+ G+ L+E Q V + V +
Sbjct: 81 GTVSWYEPSKGYGFITPDG---GGTEIFVHSSAIVGGGV--LSEAQRVAFLVVDGERG-- 133
Query: 65 YSAENL 70
AE+L
Sbjct: 134 PQAEHL 139
Score = 57.7 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G ++ Y+ ++G+GFI P+ G D+F+H S + G L G V Y Q+D
Sbjct: 253 GVVERYDAERGFGFIAPD---AGGADLFVHVSVLR--GAEALEPGDRVRYQVRQSDRG-- 305
Query: 65 YSAENLKLV 73
A+ ++ +
Sbjct: 306 PQADRVERL 314
>gi|157105290|ref|XP_001648803.1| RNA-binding protein lin-28 [Aedes aegypti]
gi|108880147|gb|EAT44372.1| RNA-binding protein lin-28 [Aedes aegypti]
Length = 157
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW+N KG+GFITP+ G DVF+H+S + G +L + + V ++ D
Sbjct: 2 RGLCKWFNVIKGWGFITPDD---GGQDVFVHQSVLQMEGFRSLGQNEPVEFEAKLTDKG 57
>gi|330983366|gb|EGH81469.1| cold shock domain family protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 55
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+
Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTF 52
>gi|73667319|ref|YP_303335.1| cold-shock DNA-binding protein family protein [Ehrlichia canis
str. Jake]
gi|72394460|gb|AAZ68737.1| cold-shock DNA-binding protein family [Ehrlichia canis str. Jake]
Length = 87
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGST------ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
+ G +KW++ +KGYGFI + + D+F+H +A+ + + L EGQ V Y
Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGDKVKNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 70
Query: 57 VQNDANGKYSAENLKLVP 74
+ NGK+SA NL+++
Sbjct: 71 --DKNNGKFSAVNLEVLE 86
>gi|254496781|ref|ZP_05109636.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
gi|254354006|gb|EET12686.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
Length = 68
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N KG+GFI SG D F+H SA+ S+G L EG V + +
Sbjct: 6 RGKVKWFNESKGFGFI-----ENSGKDYFVHFSAIQSSGFKTLPEGANVLFKAGKGQKG- 59
Query: 64 KYSAENLKLV 73
AE ++L+
Sbjct: 60 -PQAEEVELI 68
>gi|301778155|ref|XP_002924500.1| PREDICTED: hypothetical protein LOC100473556 [Ailuropoda
melanoleuca]
Length = 199
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 49 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 106 KG--AEAANVT 114
>gi|187935705|ref|YP_001885709.1| hypothetical protein CLL_A1515 [Clostridium botulinum B str.
Eklund 17B]
gi|187723858|gb|ACD25079.1| conserved domain protein [Clostridium botulinum B str. Eklund
17B]
Length = 69
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KGYGFI+ + GDDVF H S + G +L EG+ VT+D +
Sbjct: 5 TGIVKWFNAEKGYGFISCD----EGDDVFAHHSQIKENGPEKDLHEGESVTFDIQDGEKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PMATNIQKL 69
>gi|145356187|ref|XP_001422318.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582559|gb|ABP00635.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 76
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N KG+GFITP +++F+H++ ++ AG + E + V Y+ ++A+G
Sbjct: 1 RGKVKWFNVTKGFGFITPHD---GSEEIFVHQTGISRAGFRSAWEDEEVEYEV--SNADG 55
Query: 64 KYSAENLK 71
+ A N+
Sbjct: 56 RPVAVNVT 63
>gi|156415990|ref|NP_057066.2| Y-box-binding protein 2 [Homo sapiens]
gi|116242847|sp|Q9Y2T7|YBOX2_HUMAN RecName: Full=Y-box-binding protein 2; AltName: Full=Contrin;
AltName: Full=DNA-binding protein C; Short=Dbpc;
AltName: Full=Germ cell-specific Y-box-binding protein;
AltName: Full=MSY2 homolog
gi|21707292|gb|AAH33800.1| Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 96 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 153 KG--AEATNVT 161
>gi|4837737|gb|AAD30662.1| germ cell specific Y-box binding protein [Homo sapiens]
gi|28838612|gb|AAH47760.1| Y box binding protein 2 [Homo sapiens]
gi|119610629|gb|EAW90223.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
gi|119610630|gb|EAW90224.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
Length = 364
Score = 73.9 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 96 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 153 KG--AEATNVT 161
>gi|172041246|ref|YP_001800960.1| putative cold shock protein [Corynebacterium urealyticum DSM
7109]
gi|171852550|emb|CAQ05526.1| putative cold shock protein [Corynebacterium urealyticum DSM
7109]
Length = 127
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++W++ DKG+GF+ S +DV++ V G+ L GQ V Y++V
Sbjct: 1 MPVGKVRWFDADKGFGFV----SNPGEEDVYVG-RQVLPEGVTELVPGQRVEYEFVAARR 55
Query: 62 NGKYSAENLKLVPKSS 77
A +L ++
Sbjct: 56 G--PQALSLTILDAGP 69
>gi|51473848|ref|YP_067605.1| cold shock protein CspA [Rickettsia typhi str. Wilmington]
gi|81826291|sp|Q68W69|CSPA_RICTY RecName: Full=Cold shock-like protein CspA
gi|51460160|gb|AAU04123.1| cold shock protein CspA [Rickettsia typhi str. Wilmington]
Length = 70
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 2 VHR---GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G +KWYN K +GFI + G DVF+H+SA+ +AGL +L E Q V +D +
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDN---GGKDVFVHKSAIEAAGLHSLKERQEVIFDIEE 57
Query: 59 NDANGKYSAENLKL 72
GK A NL++
Sbjct: 58 --KQGKAYAINLRV 69
>gi|57239424|ref|YP_180560.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
Welgevonden]
gi|58579396|ref|YP_197608.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
Welgevonden]
gi|58617451|ref|YP_196650.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
Gardel]
gi|57161503|emb|CAH58429.1| hypothetical protein Erum6970 [Ehrlichia ruminantium str.
Welgevonden]
gi|58417063|emb|CAI28176.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
Gardel]
gi|58418022|emb|CAI27226.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
Welgevonden]
Length = 95
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGST------ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
+ G +KW++ +KGYGFI + + D+F+H +A+ + + L EGQ V Y
Sbjct: 19 YTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQL 78
Query: 57 VQNDANGKYSAENLKLVP 74
+ NGK+SA NL+++
Sbjct: 79 --DKNNGKFSAINLEVLE 94
>gi|294508964|ref|YP_003565853.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM
B1551]
gi|294352268|gb|ADE72590.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM
B1551]
Length = 76
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYDYVQ 58
G++KW+N +KG+GFITPE G D+F+H +A+ + +L EGQ VT+ V
Sbjct: 7 GTVKWFNHEKGFGFITPEN----GPDLFVHFTAIERTKGTEGVVIKSLKEGQKVTFVVVN 62
Query: 59 NDANGKYSAENLKLV 73
AE ++++
Sbjct: 63 GQRG--MQAEMVRVL 75
>gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
484]
Length = 312
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
+ +G+++W++ ++G+GF++ +D+F+H S + G L EGQ V ++ + D
Sbjct: 1 MPQGTVRWFDAERGFGFLSLGD---EAEDLFVHASEIVGDDGPRVLREGQEVEFEVGEGD 57
Query: 61 ANGKYSAENLKLV 73
A +++V
Sbjct: 58 RG--PVARRVRVV 68
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY+PDKG+GF++P+ G+D+F+H ++ L L EG VTYD D
Sbjct: 157 GTVTWYDPDKGFGFVSPDD---GGEDLFVHARSLVGD-LSELVEGDRVTYDVAAGDRG-- 210
Query: 65 YSAENLKL 72
A +++L
Sbjct: 211 PQARDVRL 218
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + ++PD+G+GFITP+ G D+F+H S V + L EG V + Q+D
Sbjct: 251 GVVARFDPDRGFGFITPD---AGGPDLFVHVSVVRNG--EVLEEGDRVRFKVRQSDRG-- 303
Query: 65 YSAENLKLV 73
A+ ++L+
Sbjct: 304 PQADRVELL 312
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ WY P KGYGF+ P+G G ++F+H SA+ G+ +TEGQ V + V +
Sbjct: 81 GTVSWYEPTKGYGFVGPDG---GGPEIFVHSSAIVGGGV--ITEGQRVAFLVVPGEKG-- 133
Query: 65 YSAENL 70
A++L
Sbjct: 134 PQADHL 139
>gi|328545164|ref|YP_004305273.1| cold shock-like transcription regulator protein [polymorphum
gilvum SL003B-26A1]
gi|326414906|gb|ADZ71969.1| Putative cold shock-like transcription regulator protein
[Polymorphum gilvum SL003B-26A1]
Length = 70
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+IK++N D+G+GFITPE G DVF+H SA AGL EG VT+ +
Sbjct: 1 MRENGTIKFFNYDRGFGFITPEN---GGKDVFVHISAFEQAGLPAPEEGAKVTFVAEDDR 57
Query: 61 ANGKYSAENLKL 72
A L+L
Sbjct: 58 RGRGKQAGQLEL 69
>gi|83815315|ref|YP_445098.1| cold-shock DNA-binding domain-containing protein [Salinibacter
ruber DSM 13855]
gi|294506974|ref|YP_003571032.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8]
gi|83756709|gb|ABC44822.1| 'Cold-shock' DNA-binding domain, putative [Salinibacter ruber DSM
13855]
gi|294343302|emb|CBH24080.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8]
Length = 69
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++P +GYGF+ P+ DDVFLH S V +L EG + ++ + +
Sbjct: 1 METGTVKWFSPAEGYGFVEPDNGE---DDVFLHHSEVPDE---DLEEGDRLEFEIEETEK 54
Query: 62 NGKYSAENLKLVPK 75
+A N++ + +
Sbjct: 55 G--LNAVNIEALTE 66
>gi|332669174|ref|YP_004452182.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332338212|gb|AEE44795.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
484]
Length = 126
Score = 73.5 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ ++G+GFI + G +VFLH SA+ AG+ G V +
Sbjct: 1 MPTGKVKWFDTERGFGFIADDD----GGEVFLHASAL-PAGV-TPKPGTKVDFGVADGRR 54
Query: 62 NGKYSAENLKLVPKSSN 78
A ++K++ +
Sbjct: 55 G--PQALSVKILDPLPS 69
>gi|157826078|ref|YP_001493798.1| cold shock-like protein [Rickettsia akari str. Hartford]
gi|157800036|gb|ABV75290.1| cold shock-like protein [Rickettsia akari str. Hartford]
Length = 70
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWYN K +GFI E G DVF+H+SAV + GL +L EGQ V +D + GK
Sbjct: 7 GKVKWYNSTKNFGFIEQEN---GGKDVFVHKSAVEATGLHSLEEGQDVIFDLEE--KQGK 61
Query: 65 YSAENLKL 72
A NL++
Sbjct: 62 AYAVNLRI 69
>gi|223982759|ref|ZP_03632987.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM
12042]
gi|223965259|gb|EEF69543.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM
12042]
Length = 65
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N +KGYGFI G DVF H S + G + E V +D ++ D
Sbjct: 2 QGKVKMFNKEKGYGFIKLSD----GRDVFFHYSQLVMDGFKTIEENAEVEFDLIEGDRG- 56
Query: 64 KYSAENLKLV 73
Y A N+K +
Sbjct: 57 -YQAHNVKKL 65
>gi|183601800|ref|ZP_02963170.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
gi|219683669|ref|YP_002470052.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011]
gi|183219406|gb|EDT90047.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
gi|219621319|gb|ACL29476.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011]
Length = 129
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I+W++ KGYGFI + G DVFL ++A+ G+ N +G V Y ++ +
Sbjct: 1 MPSGRIRWFDAKKGYGFIAGDD----GKDVFLPQTALPQ-GVRNPRKGAKVEYSVIEGNR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + +V + +
Sbjct: 56 G--QVAMGVTMVASAPS 70
>gi|288959293|ref|YP_003449634.1| cold shock protein [Azospirillum sp. B510]
gi|288911601|dbj|BAI73090.1| cold shock protein [Azospirillum sp. B510]
Length = 245
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KGYGF P+ G DVF+ A+ SAGL L +GQ V Q +
Sbjct: 182 GTVKWFNGGKGYGFAQPDD---GGRDVFIPARALESAGLRGLDDGQRVRMTVRQTEKG-- 236
Query: 65 YSAENLKL 72
A +LK+
Sbjct: 237 MEAVSLKV 244
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
++KW+NP++GYGF+ S G D L S V AG L +G V D V++
Sbjct: 21 TATVKWFNPERGYGFVKVGDS---GKDALLPASIVVPAGHTTLPDGATVVVDIVEDRKGQ 77
Query: 64 KYS 66
+ S
Sbjct: 78 QVS 80
>gi|40062712|gb|AAR37625.1| cold shock DNA-binding domain protein [uncultured marine
bacterium 314]
Length = 67
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW+N KGYGFI E DVF+H SA +A L L EG +T++ D
Sbjct: 1 MSIKGKVKWFNGAKGYGFIEREDKE---KDVFVHASAAEAASLQ-LNEGDALTFEVESGD 56
Query: 61 ANGKYSAENLKL 72
SA NL+
Sbjct: 57 KG--PSAVNLQK 66
>gi|90415923|ref|ZP_01223856.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
gi|90332297|gb|EAS47494.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
Length = 89
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW++ D+G+GFI P+ ++F H + G L Q VTYD ++
Sbjct: 1 MADTGRVKWFSNDRGFGFIEPDNGE---RELFAHHQNIIMEGYKTLKCFQRVTYDV-EHG 56
Query: 61 ANGKYSAENL 70
NG++ A N+
Sbjct: 57 KNGRH-AVNI 65
>gi|148235020|ref|NP_001091543.1| DNA-binding protein A [Bos taurus]
gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus]
gi|296487252|gb|DAA29365.1| cold shock domain protein A [Bos taurus]
Length = 376
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 99 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 155
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 156 KG--AEAANVT 164
>gi|1160331|dbj|BAA03376.1| dbpA murine homologue [Mus musculus]
Length = 308
Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|270157314|ref|ZP_06185971.1| cold shock protein CspB [Legionella longbeachae D-4968]
gi|289164302|ref|YP_003454440.1| stress protein, member of the CspA-family [Legionella longbeachae
NSW150]
gi|269989339|gb|EEZ95593.1| cold shock protein CspB [Legionella longbeachae D-4968]
gi|288857475|emb|CBJ11305.1| stress protein, member of the CspA-family [Legionella longbeachae
NSW150]
Length = 68
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N KG+GFI SG D F+H SA+ S+G +L EG V + +
Sbjct: 6 RGKVKWFNESKGFGFI-----ENSGKDYFVHFSAIQSSGFKSLPEGANVLFKAGKGQKG- 59
Query: 64 KYSAENLKLV 73
AE ++L+
Sbjct: 60 -PQAEEIELI 68
>gi|310827425|ref|YP_003959782.1| cold shock protein CspA [Eubacterium limosum KIST612]
gi|308739159|gb|ADO36819.1| cold shock protein CspA [Eubacterium limosum KIST612]
Length = 66
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N +KG+GFI E G+D+F+ S++ +L +G V Y+ Q D
Sbjct: 1 MSNGTVKWFNSNKGFGFIEGEN----GEDIFVLFSSIVGGNCESLRDGDKVIYETEQGDR 56
Query: 62 NGKYSAENLKLV 73
+ A++++LV
Sbjct: 57 --QLRAKSVQLV 66
>gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla
CCMP1545]
gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla
CCMP1545]
Length = 316
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ W+N KG+GFIT E D+F+H+S + S G +L + + V + + +G+
Sbjct: 42 GTVNWFNVAKGFGFITRED---GQGDIFVHQSDIYSEGFRSLRDEEPVEFTLQEIG-DGR 97
Query: 65 YSAENLK 71
Y A ++
Sbjct: 98 YKAVHVT 104
>gi|220911683|ref|YP_002486992.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
gi|219858561|gb|ACL38903.1| cold-shock DNA-binding domain protein [Arthrobacter
chlorophenolicus A6]
Length = 127
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF+ E G +VFL +S++ G+ L G V +
Sbjct: 1 MPTGKVKWYDKDKGFGFLAGED----GQEVFLPKSSL-PEGVTELKAGTRVEFGVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L+++ K+ +
Sbjct: 56 G--AQALGLRVLDKTPS 70
>gi|126340161|ref|XP_001372013.1| PREDICTED: similar to YB2 [Monodelphis domestica]
Length = 320
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D V+ +
Sbjct: 46 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 102
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 103 KG--AEAANVT 111
>gi|57086603|ref|XP_546585.1| PREDICTED: similar to Y-box binding protein-2 (Germ cell specific
Y-box binding protein) (FRGY2 homolog) [Canis
familiaris]
Length = 361
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 155 KG--AEAANVT 163
>gi|270284256|ref|ZP_06193907.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093]
gi|270277415|gb|EFA23269.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093]
Length = 151
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I+WY+ +KGYGFI E G DVFL A+ AG+ L +G V Y +
Sbjct: 23 MPSGKIRWYDANKGYGFIENE----EGKDVFLPAMAL-PAGVTTLRKGTKVEYSVIDGRK 77
Query: 62 NGKYSAENLKLVPKSSN 78
A L+++ + +
Sbjct: 78 G--PQAMGLEVIASAPS 92
>gi|47059495|ref|NP_620817.2| DNA-binding protein A long isoform [Mus musculus]
gi|82524639|ref|NP_114185.2| DNA-binding protein A [Rattus norvegicus]
gi|61212920|sp|Q9JKB3|DBPA_MOUSE RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
domain-containing protein A; AltName: Full=Y-box protein
3
gi|29387050|gb|AAH48242.1| Cold shock domain protein A [Mus musculus]
gi|76779326|gb|AAI05779.1| Cold shock domain protein A [Rattus norvegicus]
Length = 361
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|323185910|gb|EFZ71267.1| cold shock-like protein cspI [Escherichia coli 1357]
Length = 62
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+NP+KG+GFITP+ DVF+H SA+ S LTE Q V + +A
Sbjct: 2 KWFNPEKGFGFITPKD---GSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKG--PAA 56
Query: 68 ENLKLV 73
++ +
Sbjct: 57 VHVVAL 62
>gi|269796415|ref|YP_003315870.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
10542]
gi|269098600|gb|ACZ23036.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
10542]
Length = 127
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+++ ++G+GFI + G+ VFLH SA+ G+ G V +
Sbjct: 1 MPTGKVKFFDTERGFGFIASDD----GEQVFLHASAL-PEGVTAPKPGAKVEFGVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ + +
Sbjct: 56 G--PQALSVTFLDPVPS 70
>gi|109113073|ref|XP_001107460.1| PREDICTED: y-box-binding protein 2-like [Macaca mulatta]
Length = 359
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 97 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 154 KG--AEAANVT 162
>gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein 3 long isoform [Mus musculus]
Length = 361
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|288962305|ref|YP_003452600.1| cold shock protein [Azospirillum sp. B510]
gi|288914571|dbj|BAI76056.1| cold shock protein [Azospirillum sp. B510]
Length = 203
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW+N KG+GFI P + G D+F+H A+ +G+ L +G V Q +
Sbjct: 140 GTVKWFNVSKGFGFIAP---STGGKDIFVHIRALERSGISGLDDGAQVRVTIRQGAKGPE 196
Query: 65 YS 66
Sbjct: 197 AQ 198
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N KG+GF+TP+ D FLH + + G +L EG +T D + +
Sbjct: 23 TVKWFNATKGFGFVTPDD---GSPDAFLHSTVLQFCGHDSLPEGATITCDLSRGPKGPQV 79
Query: 66 S 66
+
Sbjct: 80 A 80
>gi|289178440|gb|ADC85686.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12]
Length = 168
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I+W++ KGYGFI + G DVFL ++A+ G+ N +G V Y ++ +
Sbjct: 40 MPSGRIRWFDAKKGYGFIAGDD----GKDVFLPQTALPQ-GVRNPRKGAKVEYSVIEGNR 94
Query: 62 NGKYSAENLKLVPKSSN 78
A + +V + +
Sbjct: 95 G--QVAMGVTMVASAPS 109
>gi|109095654|ref|XP_001118505.1| PREDICTED: DNA-binding protein A-like [Macaca mulatta]
Length = 407
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 128 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 184
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 185 KG--AEAANVT 193
>gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 [Mus musculus]
Length = 361
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|18310224|ref|NP_562158.1| cold shock protein [Clostridium perfringens str. 13]
gi|110798743|ref|YP_695895.1| cold shock protein [Clostridium perfringens ATCC 13124]
gi|168205487|ref|ZP_02631492.1| cold shock protein [Clostridium perfringens E str. JGS1987]
gi|168209633|ref|ZP_02635258.1| cold shock protein [Clostridium perfringens B str. ATCC 3626]
gi|168213057|ref|ZP_02638682.1| cold shock protein [Clostridium perfringens CPE str. F4969]
gi|168217114|ref|ZP_02642739.1| cold shock protein [Clostridium perfringens NCTC 8239]
gi|169343961|ref|ZP_02864952.1| cold shock protein [Clostridium perfringens C str. JGS1495]
gi|18144903|dbj|BAB80948.1| cold shock protein [Clostridium perfringens str. 13]
gi|110673390|gb|ABG82377.1| cold shock protein [Clostridium perfringens ATCC 13124]
gi|169297869|gb|EDS79964.1| cold shock protein [Clostridium perfringens C str. JGS1495]
gi|170663060|gb|EDT15743.1| cold shock protein [Clostridium perfringens E str. JGS1987]
gi|170712262|gb|EDT24444.1| cold shock protein [Clostridium perfringens B str. ATCC 3626]
gi|170715408|gb|EDT27590.1| cold shock protein [Clostridium perfringens CPE str. F4969]
gi|182380855|gb|EDT78334.1| cold shock protein [Clostridium perfringens NCTC 8239]
Length = 69
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
G +KW+N +KGYGFI+ + GDDVF+H S V G +L EG+ V++D + +
Sbjct: 5 TGIVKWFNQEKGYGFISCD----EGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGEKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PMATNVQKL 69
>gi|147904000|ref|NP_001091595.1| Y-box-binding protein 2 [Bos taurus]
gi|146186879|gb|AAI40615.1| YBX2 protein [Bos taurus]
gi|296476769|gb|DAA18884.1| Y box binding protein 2 [Bos taurus]
Length = 360
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 155 KG--AEAANVT 163
>gi|241190702|ref|YP_002968096.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196108|ref|YP_002969663.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|240249094|gb|ACS46034.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250662|gb|ACS47601.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|295793691|gb|ADG33226.1| cold shock protein [Bifidobacterium animalis subsp. lactis V9]
Length = 147
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I+W++ KGYGFI + G DVFL ++A+ G+ N +G V Y ++ +
Sbjct: 19 MPSGRIRWFDAKKGYGFIAGDD----GKDVFLPQTALPQ-GVRNPRKGAKVEYSVIEGNR 73
Query: 62 NGKYSAENLKLVPKSSN 78
A + +V + +
Sbjct: 74 G--QVAMGVTMVASAPS 88
>gi|163839253|ref|YP_001623658.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
gi|162952729|gb|ABY22244.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
Length = 119
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF+T + G +VFLH +A+ AG+ + G + +
Sbjct: 1 MPTGKVKWFDNDKGFGFLTSD----EGQEVFLHANAL-PAGVKEIKVGTRMEFGVADGKK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ +
Sbjct: 56 G--AQALSVRILDTPPS 70
>gi|71725899|gb|AAZ39068.1| cold shock protein [Exiguobacterium antarcticum]
Length = 67
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
G +KW+N +KG+GFI E SGDDVF+H SA+ + G +L EGQ V+
Sbjct: 4 GKVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSLRL 51
>gi|117956377|ref|NP_058571.2| Y-box-binding protein 2 [Mus musculus]
gi|56800107|emb|CAI35155.1| Y box protein 2 [Mus musculus]
gi|187954905|gb|AAI41113.1| Y box protein 2 [Mus musculus]
Length = 359
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 97 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 154 KG--AEAANVT 162
>gi|301061696|ref|ZP_07202437.1| cold shock protein CspD [delta proteobacterium NaphS2]
gi|300444156|gb|EFK08180.1| cold shock protein CspD [delta proteobacterium NaphS2]
Length = 62
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW++ KG+GFI+ E G D+F+H + + G L+EG V+++ ++D K A
Sbjct: 3 KWFSDRKGFGFISQED----GQDLFVHHTGIDMPGFKTLSEGDRVSFEIEESDRGPK--A 56
Query: 68 ENLKLV 73
+N+ +
Sbjct: 57 KNVVKL 62
>gi|51494815|gb|AAH27785.1| Csda protein [Mus musculus]
Length = 299
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|194332739|ref|NP_001123667.1| Y box binding protein 2 [Xenopus (Silurana) tropicalis]
gi|187469386|gb|AAI66950.1| LOC100170415 protein [Xenopus (Silurana) tropicalis]
Length = 337
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 43 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 99
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 100 EKG--AEAANVT 109
>gi|269957706|ref|YP_003327495.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269306387|gb|ACZ31937.1| cold-shock DNA-binding domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 127
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ ++G+GFI + G +VFLH SA+ N G V Y
Sbjct: 1 MPTGKVKWFDSERGFGFIAGDD----GGEVFLHASALPPDA-ANPKPGTRVDYGVADGRR 55
Query: 62 NGKYSAENLKLVPKSSN 78
SA + ++ +
Sbjct: 56 G--PSALAVTVLDAGPS 70
>gi|118589799|ref|ZP_01547204.1| putative cold shock-like transcription regulator protein [Stappia
aggregata IAM 12614]
gi|118437885|gb|EAV44521.1| putative cold shock-like transcription regulator protein [Stappia
aggregata IAM 12614]
Length = 70
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+IK++N D+G+GFITPE DVF+H +A AG+ EG +++ +
Sbjct: 1 MRENGTIKFFNHDRGFGFITPEN---GSKDVFVHITAFEQAGIGTPVEGAKISFVAEDDR 57
Query: 61 ANGKYSAENLKLV 73
A L+L+
Sbjct: 58 RGRGKQAAQLELL 70
>gi|83814543|ref|YP_446197.1| hypothetical protein SRU_2091 [Salinibacter ruber DSM 13855]
gi|294508125|ref|YP_003572183.1| cold shock-like protein [Salinibacter ruber M8]
gi|83755937|gb|ABC44050.1| conserved domain protein [Salinibacter ruber DSM 13855]
gi|294344453|emb|CBH25231.1| putative cold shock-like protein [Salinibacter ruber M8]
Length = 110
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ ++KW++ KGYGFI G+DVF+H S + L Q V ++
Sbjct: 1 MRTSTVKWFDAKKGYGFIHHPD---DGEDVFVHYSNIQSDDDFKTLKSDQHVRFEMNDGP 57
Query: 61 ANGKYSAENLKLV--PKSSN 78
A + + ++ +
Sbjct: 58 KG--LHALEVAPLDDEEAPS 75
>gi|261868763|ref|YP_003256685.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261414095|gb|ACX83466.1| cold-shock DNA-binding domain protein [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 69
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++KW+N KG+GFI P DVF+H S + L EG V Y+ +
Sbjct: 5 NGTVKWFNSIKGFGFIAPTD---GSKDVFVHFSGIVGNNFRTLNEGDHVAYNVQNSQRG- 60
Query: 64 KYSAENLKLV 73
+A +++V
Sbjct: 61 -PTAIEVEVV 69
>gi|62656341|ref|XP_220618.3| PREDICTED: Y box protein 2 [Rattus norvegicus]
gi|109491139|ref|XP_001079683.1| PREDICTED: Y box binding protein 2 [Rattus norvegicus]
Length = 359
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 97 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 154 KG--AEAANVT 162
>gi|325962251|ref|YP_004240157.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468338|gb|ADX72023.1| cold-shock DNA-binding protein family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 127
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ E G +VFL +S++ G+ L G V +
Sbjct: 1 MPTGKVKWYDKEKGFGFLAGED----GQEVFLPKSSL-PEGVTELKAGTRVEFGVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A L+++ K+ +
Sbjct: 56 G--AQALGLRVLDKTPS 70
>gi|167626580|ref|YP_001677080.1| cold-shock DNA-binding domain-containing protein [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|241667137|ref|ZP_04754715.1| cold-shock DNA-binding domain-containing protein [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254875691|ref|ZP_05248401.1| cold shock protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|167596581|gb|ABZ86579.1| putative cold-shock DNA-binding domain protein [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254841712|gb|EET20126.1| cold shock protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 67
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ +
Sbjct: 6 QGTVKFFNDQKGFGFITPEN---GGKDVFVHISKLNGE---TLAEGQQVTFETQEGRKG- 58
Query: 64 KYSAENLKLV 73
A N++++
Sbjct: 59 -PEAINIEVL 67
>gi|157964818|ref|YP_001499642.1| cold shock-like protein [Rickettsia massiliae MTU5]
gi|157844594|gb|ABV85095.1| Cold shock-like protein [Rickettsia massiliae MTU5]
Length = 80
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 2 VHR---GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D +
Sbjct: 11 MATNIVGKVKWYNSTKNFGFIEQEN---GGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE 67
Query: 59 NDANGKYSAENLK 71
GK A NL+
Sbjct: 68 --KQGKAYAVNLR 78
>gi|227832587|ref|YP_002834294.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
gi|262182930|ref|ZP_06042351.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
gi|227453603|gb|ACP32356.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
Length = 126
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF+ S +DV++ R+ + G+ L +GQ + +D+
Sbjct: 1 MPIGKVKWYDADKGFGFV----SNPGDEDVYVGRNVLPK-GVDELHQGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVP 74
A +K++
Sbjct: 56 G--PQALRVKVLD 66
>gi|54023130|ref|YP_117372.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54014638|dbj|BAD56008.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 89
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G++ W++ KG+GFI P VF+ S++ +G L EGQ V + +
Sbjct: 15 YHGTVAWFDAPKGFGFIEPAEGPRG--PVFVDFSSIEMSGYRTLVEGQPVRFV----RSA 68
Query: 63 GKYSAENLKLVPKSSN 78
G+ A ++ + ++ +
Sbjct: 69 GRAEAVAVRPLAETGS 84
>gi|74007889|ref|XP_531701.2| PREDICTED: similar to nuclease sensitive element binding protein 1
[Canis familiaris]
Length = 399
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 136 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGE 192
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 193 KG--AEAANVT 201
>gi|325478635|gb|EGC81747.1| major cold shock protein CspA [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 66
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +K ++ KG+GFIT E G+D+F+H S + G L Q+V +D +
Sbjct: 1 MKRGEVKIFDNKKGFGFITCE-----GEDLFVHYSDIDKDGFKALYPKQIVEFDRIDAPR 55
Query: 62 NGKYSAENLKLVP 74
A N+K+V
Sbjct: 56 G--PQAINVKIVE 66
>gi|323158695|gb|EFZ44709.1| cold shock-like protein cspI [Escherichia coli E128010]
Length = 63
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
N KG+GFITP DVF+H SA+ G L EGQ V ++ +A N+
Sbjct: 6 NESKGFGFITPAD---GSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG--PAAVNV 60
Query: 71 KLV 73
+
Sbjct: 61 TAI 63
>gi|153938873|ref|YP_001391027.1| cold shock protein [Clostridium botulinum F str. Langeland]
gi|170756146|ref|YP_001781321.1| cold shock protein [Clostridium botulinum B1 str. Okra]
gi|152934769|gb|ABS40267.1| cold shock protein [Clostridium botulinum F str. Langeland]
gi|169121358|gb|ACA45194.1| cold shock protein [Clostridium botulinum B1 str. Okra]
gi|295319083|gb|ADF99460.1| cold shock protein [Clostridium botulinum F str. 230613]
Length = 69
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
+H G++KW++ ++GYGFI +G DV++H + +L EG+ V +D V+ +
Sbjct: 3 MHTGTVKWFDNERGYGFIA----GNNGKDVYVHYMQIKEKTHNKDLHEGEEVLFDIVEKE 58
Query: 61 ANGKYSAENLKLV 73
A N++ +
Sbjct: 59 KG--PIAINVQKL 69
>gi|323342405|ref|ZP_08082637.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463517|gb|EFY08711.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 65
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N +KG+GFIT E G D+F H + + G + EG V ++ V+++
Sbjct: 2 KGKVKTFNKNKGFGFITAED----GQDIFFHYTHLIMEGFKTIEEGTEVEFELVESERG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -LQAHNIVRI 65
>gi|6166111|sp|Q62764|DBPA_RAT RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
domain-containing protein A; AltName: Full=Muscle Y-box
protein YB2; AltName: Full=RYB-A; AltName:
Full=Y-box-binding protein A
gi|1101884|gb|AAB60520.1| YB2 [Rattus norvegicus]
gi|1589174|prf||2210343A nicotinic acetylcholine receptor repressor
Length = 361
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|269123694|ref|YP_003306271.1| cold-shock DNA-binding domain-containing protein [Streptobacillus
moniliformis DSM 12112]
gi|268315020|gb|ACZ01394.1| cold-shock DNA-binding domain protein [Streptobacillus
moniliformis DSM 12112]
Length = 65
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI+ E G D FLH S + G + EG+ V +D +
Sbjct: 3 GKVKWFNEKKGFGFISGED----GKDYFLHFSKINKGGFKTVNEGEEVEFDIEDGEKG-- 56
Query: 65 YSAENL 70
A N+
Sbjct: 57 PQATNV 62
>gi|326692723|ref|ZP_08229728.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
argentinum KCTC 3773]
Length = 74
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K + ++GYG+ITP+ E G DV++H + + G +L +G+ V+Y VQ
Sbjct: 1 MKTGTVKIWQKERGYGYITPD---EGGADVYVHFNGIDMDGFKSLNQGERVSYVLVQGYK 57
Query: 62 NGKYSAENLKLVPKSSN 78
+ Y A ++ + K ++
Sbjct: 58 D--YQAAEVRPIMKKAS 72
>gi|296111917|ref|YP_003622299.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
kimchii IMSNU 11154]
gi|295833449|gb|ADG41330.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
kimchii IMSNU 11154]
Length = 74
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K + ++GYG+ITP+ E G+DVF+H + + G +L +G+ VTY VQ
Sbjct: 1 MKTGTVKIWQKERGYGYITPD---EGGEDVFVHFNGIDMDGFKSLNQGEKVTYQLVQGYK 57
Query: 62 NGKYSAENLKLVPKSSN 78
N Y A ++ V K ++
Sbjct: 58 N--YQAAQVQPVMKKAS 72
>gi|14270383|emb|CAC39436.1| cold-shock domain protein [Oryzias latipes]
Length = 366
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D ++
Sbjct: 4 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEA 60
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 61 AKG--SEAANVT 70
>gi|193214431|ref|YP_001995630.1| cold-shock DNA-binding domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193087908|gb|ACF13183.1| cold-shock DNA-binding domain protein [Chloroherpeton thalassium
ATCC 35110]
Length = 73
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59
M HR ++KW++ KGYGFI + E G+D+F+H SA++S L +G V ++ V
Sbjct: 1 MAHRSNVKWFDGKKGYGFIV---NPEGGEDIFVHYSAISSEKKYKMLDQGVEVEFELVTT 57
Query: 60 DANGKYSAENLKLVPK 75
D A+N++ + +
Sbjct: 58 DKG--LQAQNVREISE 71
>gi|54026194|ref|YP_120436.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54017702|dbj|BAD59072.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 68
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ W++ KG+GFI +G G DVF+ + G +L EGQ V +D Q+ +
Sbjct: 1 MVQGTVLWFDSKKGFGFIAQDG---GGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKS 57
Query: 62 NGKYSAENLKLV 73
A + ++
Sbjct: 58 G--PEAVGVHVI 67
>gi|291303304|ref|YP_003514582.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290572524|gb|ADD45489.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 144
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWYN +KG+GF++ + G+DVFLHR A+ G+ L GQ + Y V
Sbjct: 13 PTGRVKWYNAEKGFGFVSRDD---GGNDVFLHRDAL-PEGVTELKAGQKLEYGIVDTRRG 68
Query: 63 GKYSAENLKLVPK 75
A ++ LV
Sbjct: 69 --VQAMSVTLVDT 79
>gi|532211|gb|AAC34193.1| Y-box binding protein [Mus musculus]
Length = 274
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 71 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 127
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 128 KG--AEAANVT 136
>gi|329940599|ref|ZP_08289880.1| cold-shock domain-containing protein [Streptomyces
griseoaurantiacus M045]
gi|329300660|gb|EGG44557.1| cold-shock domain-containing protein [Streptomyces
griseoaurantiacus M045]
Length = 62
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q +A
Sbjct: 2 KWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG--PTA 56
Query: 68 ENL 70
EN+
Sbjct: 57 ENI 59
>gi|158934472|emb|CAL64870.1| putative RlYB2 protein [Rana lessonae]
Length = 327
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 37 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 93
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 94 EKG--AEAANVT 103
>gi|152967523|ref|YP_001363307.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
SRS30216]
gi|151362040|gb|ABS05043.1| putative cold-shock DNA-binding domain protein [Kineococcus
radiotolerans SRS30216]
Length = 152
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ DKG+GF+ E G +VF+H SA+ AG L++G V + VQ
Sbjct: 25 PTGKVKWFDADKGFGFLAAED----GAEVFVHASAL-PAGTTTLSKGSRVEFGVVQGKNG 79
Query: 63 GKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 80 --TQALSVRLLDPVHS 93
>gi|153811452|ref|ZP_01964120.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174]
gi|149832579|gb|EDM87663.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174]
gi|291546074|emb|CBL19182.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5]
Length = 75
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW++ KGYGFIT E G D F H S + G L+ GQ V ++ DANG
Sbjct: 6 QGTVKWFSAQKGYGFITGED----GIDYFAHFSEIQMDGYRKLSGGQPVLFEAG-TDANG 60
Query: 64 KYSAENLKLVPKSSN 78
+ A+N+ ++
Sbjct: 61 RSLAKNISPADPNAE 75
>gi|311746405|ref|ZP_07720190.1| putative cold shock protein [Algoriphagus sp. PR1]
gi|126575291|gb|EAZ79623.1| putative cold shock protein [Algoriphagus sp. PR1]
Length = 64
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFITP+ S +DVF+H+S + + E V+Y+ VQ
Sbjct: 1 MNEGTVKFFNTTKGFGFITPDDS---DEDVFVHQSGLVHD----IRENDKVSYELVQGKK 53
Query: 62 NGKYSAENLKLVP 74
+A N+K++
Sbjct: 54 G--VNAVNVKVIK 64
>gi|194211706|ref|XP_001495854.2| PREDICTED: similar to Y-box protein ZONAB-B [Equus caballus]
Length = 332
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 55 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 111
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 112 KG--AEAANVT 120
>gi|167468427|ref|ZP_02333131.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
Length = 66
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +A
Sbjct: 6 KWFDVCKGFGFITPADGSL---DVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKG--PAA 60
Query: 68 ENL 70
N+
Sbjct: 61 VNV 63
>gi|71983225|ref|NP_492281.2| abnormal cell LINeage family member (lin-28) [Caenorhabditis
elegans]
gi|6434276|emb|CAB61009.1| C. elegans protein F02E9.2b, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 196
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y +
Sbjct: 24 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 80
Query: 65 YSAENLK 71
A +
Sbjct: 81 REAYAVS 87
>gi|56707540|ref|YP_169436.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89255867|ref|YP_513229.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
gi|110670011|ref|YP_666568.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115314356|ref|YP_763079.1| cold shock protein [Francisella tularensis subsp. holarctica
OSU18]
gi|118497088|ref|YP_898138.1| cold shock protein [Francisella tularensis subsp. novicida U112]
gi|134302526|ref|YP_001122496.1| cold shock protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156501851|ref|YP_001427916.1| cold-shock DNA-binding domain-containing protein [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|167010093|ref|ZP_02275024.1| hypothetical protein Ftulh_05064 [Francisella tularensis subsp.
holarctica FSC200]
gi|187931344|ref|YP_001891328.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194323385|ref|ZP_03057162.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
subsp. novicida FTE]
gi|208778881|ref|ZP_03246227.1| cold-shock' DNA-binding domain protein, putative [Francisella
novicida FTG]
gi|224456609|ref|ZP_03665082.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254367231|ref|ZP_04983259.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
gi|254368706|ref|ZP_04984719.1| cold shock protein [Francisella tularensis subsp. holarctica
FSC022]
gi|254370063|ref|ZP_04986069.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254372452|ref|ZP_04987941.1| hypothetical protein FTCG_00012 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254373914|ref|ZP_04989396.1| cold shock DNA binding protein [Francisella novicida GA99-3548]
gi|254874358|ref|ZP_05247068.1| cold shock protein cspC [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290953337|ref|ZP_06557958.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
holarctica URFT1]
gi|295313426|ref|ZP_06804032.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
holarctica URFT1]
gi|56604032|emb|CAG45024.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89143698|emb|CAJ78897.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
gi|110320344|emb|CAL08407.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115129255|gb|ABI82442.1| cold shock protein [Francisella tularensis subsp. holarctica
OSU18]
gi|118422994|gb|ABK89384.1| cold shock protein, DNA-binding [Francisella novicida U112]
gi|134050303|gb|ABO47374.1| cold shock DNA binding protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134253049|gb|EBA52143.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
gi|151568307|gb|EDN33961.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC033]
gi|151570179|gb|EDN35833.1| hypothetical protein FTCG_00012 [Francisella novicida GA99-3549]
gi|151571634|gb|EDN37288.1| cold shock DNA binding protein [Francisella novicida GA99-3548]
gi|156252454|gb|ABU60960.1| 'Cold-shock' DNA-binding domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157121627|gb|EDO65797.1| cold shock protein [Francisella tularensis subsp. holarctica
FSC022]
gi|187712253|gb|ACD30550.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194322240|gb|EDX19721.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
subsp. novicida FTE]
gi|208744681|gb|EDZ90979.1| cold-shock' DNA-binding domain protein, putative [Francisella
novicida FTG]
gi|254840357|gb|EET18793.1| cold shock protein cspC [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158694|gb|ADA78085.1| hypothetical protein NE061598_02185 [Francisella tularensis
subsp. tularensis NE061598]
gi|328675625|gb|AEB28300.1| Cold shock protein CspA [Francisella cf. novicida 3523]
gi|328676549|gb|AEB27419.1| Cold shock protein CspA [Francisella cf. novicida Fx1]
Length = 67
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ +
Sbjct: 6 QGTVKFFNEQKGFGFITPEN---GGKDVFVHISKLNGE---TLAEGQQVTFETQEGRKG- 58
Query: 64 KYSAENLKLV 73
A N++++
Sbjct: 59 -PEAINIEVL 67
>gi|301791962|ref|XP_002930949.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
partial [Ailuropoda melanoleuca]
Length = 416
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RGS+KW+N GYGFI+ + +DVF+H+ A+ ++ +G+ V +D VQ
Sbjct: 70 RGSVKWFNVKNGYGFISRHDTQ---EDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 126
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 127 ERG--TEAANVT 136
>gi|4071323|gb|AAC98674.1| Y-box protein MSY2 isoform a [Mus musculus]
Length = 282
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 20 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 77 KGAR--AANVT 85
>gi|325297104|ref|NP_001191560.1| Y-box factor homolog [Aplysia californica]
gi|1175568|sp|P41824|YBOXH_APLCA RecName: Full=Y-box factor homolog; AltName: Full=APY1
gi|409419|gb|AAA60373.1| Y-Box factor [Aplysia californica]
Length = 253
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 35 GTVKWFNVKSGYGFINRDDTK---EDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91
Query: 61 ANGKYSAENLKLVPKSSN 78
+ A N+ P+ SN
Sbjct: 92 KGNE--AANVTG-PEGSN 106
>gi|332849851|ref|XP_001142318.2| PREDICTED: y-box-binding protein 2-like [Pan troglodytes]
Length = 333
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L + +G+ V +D V+ +
Sbjct: 65 GTVKWFNVRNGYGFINRNDTK---EDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGE 121
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 122 KG--AEATNVT 130
>gi|307947474|ref|ZP_07662807.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
gi|307769292|gb|EFO28520.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
Length = 70
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+IK++N D+G+GFITPE G DVF+H +A AG+ EG +++ +
Sbjct: 1 MRETGTIKFFNHDRGFGFITPES---GGKDVFVHITAFEQAGMPAPEEGAKISFVAEDDR 57
Query: 61 ANGKYSAENLK 71
A L+
Sbjct: 58 RGRGKQAAQLE 68
>gi|242278634|ref|YP_002990763.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens
DSM 2638]
gi|242121528|gb|ACS79224.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens
DSM 2638]
Length = 69
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + W+N KG+GFI E G D+++H S V G L G+ V ++ + D
Sbjct: 1 MSLKGVVSWFNDIKGFGFIVDEA----GRDIYVHYSEVLRDGFKTLNVGEKVVFEVIDED 56
Query: 61 ANGKYSAENL 70
K +A +
Sbjct: 57 TAPKATAVRI 66
>gi|254473739|ref|ZP_05087134.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
sp. JE062]
gi|211957125|gb|EEA92330.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
sp. JE062]
Length = 70
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N DKGYGFITP D+F+H +A +G+ EG +T+ ++
Sbjct: 1 MRQDGTLKFFNHDKGYGFITPGD---GSKDIFVHITAFERSGIAVPAEGAAITFVAEEDR 57
Query: 61 ANGKYSAENLKL 72
A ++L
Sbjct: 58 RGRGLQASQIEL 69
>gi|74007475|ref|XP_549033.2| PREDICTED: similar to cold shock domain protein A [Canis
familiaris]
Length = 383
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RGS+KW+N GYGFI+ + +DVF+H++A+ ++ +G+ V +D VQ
Sbjct: 70 RGSVKWFNVKNGYGFISRHDTQ---EDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 126
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 127 ERG--TEAANVT 136
>gi|147901492|ref|NP_001081167.1| Y-box-binding protein 2-B [Xenopus laevis]
gi|214642|gb|AAA49924.1| p54 [Xenopus laevis]
Length = 324
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI S +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 43 QGTVKWFNVRNGYGFINRNDSK---EDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 100 EKG--AEAANVT 109
>gi|268568282|ref|XP_002640209.1| C. briggsae CBR-LIN-28 protein [Caenorhabditis briggsae]
Length = 219
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y +
Sbjct: 55 GSCKWFNVSKGYGFVIDDN---TGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 111
Query: 65 YSAENLK 71
A +
Sbjct: 112 KEAYAVS 118
>gi|14250672|gb|AAH08801.1| Cold shock domain protein A [Homo sapiens]
gi|18314511|gb|AAH21926.1| Cold shock domain protein A [Homo sapiens]
gi|123984533|gb|ABM83612.1| cold shock domain protein A [synthetic construct]
gi|123998509|gb|ABM86856.1| cold shock domain protein A [synthetic construct]
gi|208966070|dbj|BAG73049.1| cold shock domain protein A [synthetic construct]
Length = 372
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 93 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 150 KG--AEAANVT 158
>gi|254498496|ref|ZP_05111222.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
gi|254352272|gb|EET11081.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
Length = 68
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N KG+GFI SG D F+H SA+ S G L EG V + +
Sbjct: 7 GKVKWFNEGKGFGFI-----ESSGKDYFVHFSAIQSNGFKTLPEGAKVLFKMSKGQKG-- 59
Query: 65 YSAENLKLV 73
AE ++L+
Sbjct: 60 LQAEEVELI 68
>gi|181484|gb|AAA35749.1| DNA-binding protein A [Homo sapiens]
Length = 412
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 163 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 219
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 220 KG--AEAANVT 228
>gi|322806010|emb|CBZ03577.1| cold shock protein CspD [Clostridium botulinum H04402 065]
Length = 69
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
+H G++KW++ ++GYGFI S +G DV++H + +L EG+ V +D V+ +
Sbjct: 3 MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58
Query: 61 ANGKYSAENLKLV 73
A N++ +
Sbjct: 59 RG--PIAINVQKL 69
>gi|326912755|ref|XP_003202712.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Meleagris gallopavo]
Length = 253
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 45 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 101
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 102 KG--AEAANVT 110
>gi|51105064|gb|AAT97092.1| Y-box factor-like protein [Lymnaea stagnalis]
Length = 219
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 33 TGTVKWFNVKSGYGFINRDDTK---EDVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEG 89
Query: 60 DANGKYSAENLKLVPKSSN 78
+ + A N+ P SN
Sbjct: 90 EKGNE--AANVTG-PDGSN 105
>gi|288558834|sp|P45441|YBX2B_XENLA RecName: Full=Y-box-binding protein 2-B; AltName: Full=Cytoplasmic
RNA-binding protein p54; AltName: Full=Frog Y-box
protein 2-B; Short=FRGY2b; AltName: Full=Messenger
ribonucleoprotein particle 3; Short=mRNP3
gi|161611735|gb|AAI55914.1| Csda-A protein [Xenopus laevis]
Length = 324
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI S +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 43 QGTVKWFNVRNGYGFINRNDSK---EDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 100 EKG--AEAANVT 109
>gi|189299|gb|AAA59949.1| DNA-binding protein [Homo sapiens]
Length = 320
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 58 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 115 KG--AEAANVT 123
>gi|157804047|ref|YP_001492596.1| cold shock-like protein [Rickettsia canadensis str. McKiel]
gi|157785310|gb|ABV73811.1| cold shock-like protein [Rickettsia canadensis str. McKiel]
Length = 70
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWYN K +GFI E G DVF+H+SAV +AGL++L EGQ V +D + GK
Sbjct: 7 GKVKWYNSTKNFGFIEQE---HGGKDVFVHKSAVDAAGLYSLEEGQGVIFDLEE--KQGK 61
Query: 65 YSAENLKL 72
A NL++
Sbjct: 62 AYAVNLRI 69
>gi|332838567|ref|XP_520744.3| PREDICTED: DNA-binding protein A isoform 2 [Pan troglodytes]
Length = 374
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 95 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 152 KG--AEAANVT 160
>gi|312886814|ref|ZP_07746420.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
DSM 18603]
gi|311300641|gb|EFQ77704.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
DSM 18603]
Length = 65
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KGYGFI + G D+F+H V G+ + + V Y+ +
Sbjct: 1 MKTGKVKWFNTQKGYGFIVTDD----GKDLFVHFKDVQG-GVNAIKDNDNVEYEVEEGRK 55
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 56 G--LQAVNVKKI 65
>gi|194217599|ref|XP_001918171.1| PREDICTED: similar to LOC614429 protein [Equus caballus]
Length = 291
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 43 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 99
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 100 KG--AEAANVT 108
>gi|224586882|ref|NP_003642.3| DNA-binding protein A isoform a [Homo sapiens]
gi|97536050|sp|P16989|DBPA_HUMAN RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
domain-containing protein A; AltName: Full=Single-strand
DNA-binding protein NF-GMB
gi|1167838|emb|CAA64631.1| DNA-binding protein [Homo sapiens]
gi|15026972|emb|CAA51261.1| cold shock domain protein A [Homo sapiens]
gi|15990406|gb|AAH15564.1| Cold shock domain protein A [Homo sapiens]
gi|119616607|gb|EAW96201.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
gi|119616608|gb|EAW96202.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
gi|189054724|dbj|BAG37363.1| unnamed protein product [Homo sapiens]
Length = 372
Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 93 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 150 KG--AEAANVT 158
>gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316252424|gb|EFV11873.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 145
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ DKG+GF+T E GDDV++ SA+ AGL L GQ+V +
Sbjct: 6 PTGKVKWYSADKGFGFLTQED----GDDVYVGSSAL-PAGLEGLKPGQIVEFGMADGRRG 60
Query: 63 GKYSAENLKLVPKSS 77
A +++++ S
Sbjct: 61 --PQALSIRVLSTPS 73
>gi|71983217|ref|NP_001021085.1| abnormal cell LINeage family member (lin-28) [Caenorhabditis
elegans]
gi|74961916|sp|P92186|LIN28_CAEEL RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
protein 28
gi|1763342|gb|AAB49759.1| Lin-28 [Caenorhabditis elegans]
gi|1763344|gb|AAC47476.1| LIN-28 [Caenorhabditis elegans]
gi|6434275|emb|CAB61008.1| C. elegans protein F02E9.2a, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 227
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y +
Sbjct: 55 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 111
Query: 65 YSAENLK 71
A +
Sbjct: 112 REAYAVS 118
>gi|297691167|ref|XP_002822965.1| PREDICTED: DNA-binding protein A-like [Pongo abelii]
Length = 371
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 92 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 149 KG--AEAANVT 157
>gi|45382293|ref|NP_990737.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
gi|727428|gb|AAA64706.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
Length = 298
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ ++ +G+ V +D V+ +
Sbjct: 90 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGE 146
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 147 KG--AEAANVT 155
>gi|118575691|ref|YP_875434.1| cold-shock protein [Cenarchaeum symbiosum A]
gi|118194212|gb|ABK77130.1| cold-shock protein [Cenarchaeum symbiosum A]
Length = 63
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N +G+GFI E +G D+F+H++ + L +G V ++ +
Sbjct: 1 MEQGTVKWFNRTRGFGFIERE----TGADLFVHKTNIDGN----LRDGDKVEFEVGEGPK 52
Query: 62 NGKYSAENLKLVP 74
SA N+K
Sbjct: 53 G--PSAVNVKKAE 63
>gi|256833261|ref|YP_003161988.1| cold-shock DNA-binding domain-containing protein [Jonesia
denitrificans DSM 20603]
gi|256686792|gb|ACV09685.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM
20603]
Length = 127
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+++ ++G+GFIT + G VFLH +A+ + G V Y
Sbjct: 1 MPTGKVKFFDAERGFGFITGDD----GHQVFLHTTALPTDA-PAPKPGARVEYGVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++ + +
Sbjct: 56 G--PQALSVRYLDPPPS 70
>gi|148688939|gb|EDL20886.1| cold shock domain protein A, isoform CRA_b [Mus musculus]
Length = 292
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|92117674|ref|YP_577403.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800568|gb|ABE62943.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 68
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ GS+K++N +KGYGFI P+ D+FLH + + L V Y+ +
Sbjct: 1 MQTGSVKFFNAEKGYGFIQPDD---GTPDIFLHVHGL-ADKLRYPCPRDRVEYEVGKGP- 55
Query: 62 NGKYSAENLKLVP 74
+G+ AE + L+
Sbjct: 56 DGRLRAERVALID 68
>gi|148379732|ref|YP_001254273.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
gi|153933933|ref|YP_001384029.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
gi|153936177|ref|YP_001387571.1| cold shock protein [Clostridium botulinum A str. Hall]
gi|148289216|emb|CAL83311.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
gi|152929977|gb|ABS35477.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
gi|152932091|gb|ABS37590.1| cold shock protein [Clostridium botulinum A str. Hall]
Length = 69
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
+H G++KW++ ++GYGFI +G DV++H + L +L EG+ V +D V+ +
Sbjct: 3 MHTGTVKWFDNERGYGFIA----GNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKE 58
Query: 61 ANGKYSAENLKLV 73
A N++ +
Sbjct: 59 KG--PIAINVQKL 69
>gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 192
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GSIKW++ KGYGFI P+ G DV +H + + G EG V + VQ
Sbjct: 30 TGSIKWFDASKGYGFIVPDD---GGPDVLVHVTCLRRDGFQTAMEGARVVCEAVQRAKG 85
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N +G+GF+T D+F+H + GL L GQ V Y D
Sbjct: 123 TVKWFNRLRGFGFLTQGD---GTPDIFVHMETLRRHGLTELRPGQTVMVRYGDGDKG--L 177
Query: 66 SAENLK 71
A +K
Sbjct: 178 MAAEVK 183
>gi|161612267|gb|AAI55915.1| FRGY2 protein [Xenopus laevis]
Length = 342
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 43 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 100 EKG--AEAANVT 109
>gi|281344168|gb|EFB19752.1| hypothetical protein PANDA_021601 [Ailuropoda melanoleuca]
Length = 310
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RGS+KW+N GYGFI+ + +DVF+H+ A+ ++ +G+ V +D VQ
Sbjct: 37 RGSVKWFNVKNGYGFISRHDTQ---EDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 93
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 94 ERG--TEAANVT 103
>gi|170761472|ref|YP_001787094.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
gi|169408461|gb|ACA56872.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
Length = 69
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
+H G++KW++ ++GYGFI S +G DV++H + +L EG+ V +D V+ +
Sbjct: 3 MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58
Query: 61 ANGKYSAENLKLV 73
A N++ +
Sbjct: 59 KG--PIAINVQKL 69
>gi|20806532|ref|NP_035863.1| DNA-binding protein A short isoform [Mus musculus]
gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein 3 short isoform [Mus musculus]
gi|38382730|gb|AAH62377.1| Cold shock domain protein A [Mus musculus]
Length = 292
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|254298844|ref|ZP_04966294.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
gi|157809241|gb|EDO86411.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
Length = 52
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
+ G +KW+N KG+GFIT + G+D+F H S + G L E Q V+
Sbjct: 1 MDTGIVKWFNDAKGFGFITSDN---GGEDLFAHFSEIRMEGFKTLKENQRVS 49
>gi|147902111|ref|NP_001081274.1| Y-box-binding protein 2-A [Xenopus laevis]
gi|288558836|sp|P21574|YBX2A_XENLA RecName: Full=Y-box-binding protein 2-A; AltName: Full=Cytoplasmic
RNA-binding protein p56; AltName: Full=Frog Y-box
protein 2; Short=FRG Y2; AltName: Full=Frog Y-box
protein 2-A; Short=FRGY2a; AltName: Full=Messenger
ribonucleoprotein particle 4; Short=mRNP4
gi|214157|gb|AAA49716.1| DNA-binding protein [Xenopus laevis]
gi|213623410|gb|AAI69706.1| Sequence -specific binding protein [Xenopus laevis]
gi|213625048|gb|AAI69704.1| Sequence -specific binding protein [Xenopus laevis]
Length = 336
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 43 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 100 EKG--AEAANVT 109
>gi|52843021|ref|YP_096820.1| cold shock protein CspE [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295652|ref|YP_128067.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens]
gi|54298813|ref|YP_125182.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris]
gi|148361138|ref|YP_001252345.1| cold shock protein CspE [Legionella pneumophila str. Corby]
gi|296108468|ref|YP_003620169.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99
Alcoy]
gi|52630132|gb|AAU28873.1| cold shock protein CspE [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752598|emb|CAH14031.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris]
gi|53755484|emb|CAH16983.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens]
gi|148282911|gb|ABQ56999.1| cold shock protein CspE [Legionella pneumophila str. Corby]
gi|295650370|gb|ADG26217.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99
Alcoy]
gi|307611696|emb|CBX01390.1| hypothetical protein LPW_30821 [Legionella pneumophila 130b]
Length = 68
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N KG+GF+ G D F+H SA+ +G L EG V +
Sbjct: 6 RGTVKWFNESKGFGFL-----ESGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKG- 59
Query: 64 KYSAENLKLV 73
AE +++V
Sbjct: 60 -PQAEEVEVV 68
>gi|294500244|ref|YP_003563944.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294350181|gb|ADE70510.1| cold shock protein [Bacillus megaterium QM B1551]
Length = 70
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H+G++K +N KG GFITPE +VF+H +A+ NL+EGQ V ++ +
Sbjct: 4 HKGTVKSFNESKGSGFITPED---GSKEVFVHSNAIDHEEYKNLSEGQKVEFEIQEGAKG 60
Query: 63 GKYSAENLKLVP 74
SA + V
Sbjct: 61 --PSAIKVHPVD 70
>gi|293400347|ref|ZP_06644493.1| conserved domain protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306747|gb|EFE47990.1| conserved domain protein [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 65
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N +KGYGFIT E G DVF H S + G + V ++ V+ +
Sbjct: 2 QGKVKMFNQEKGYGFITLED----GRDVFFHYSQLMMEGFKTIDADAKVEFELVETERG- 56
Query: 64 KYSAENLKLV 73
A N+ +
Sbjct: 57 -LQAHNIVKL 65
>gi|182420146|ref|ZP_02951377.1| conserved domain protein [Clostridium butyricum 5521]
gi|237668829|ref|ZP_04528813.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182375948|gb|EDT73538.1| conserved domain protein [Clostridium butyricum 5521]
gi|237657177|gb|EEP54733.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 69
Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
+ G++KWY+ +KGYGFI+ + G+DVF H S + G +L EG+ VT+ ++D
Sbjct: 4 NTGTVKWYDREKGYGFISCD----EGNDVFAHHSQIKDNGPEKDLKEGESVTFSIEESDK 59
Query: 62 NGKYSAENLKL 72
A N++
Sbjct: 60 G--PMAINIQK 68
>gi|262089577|gb|ACY24676.1| hypothetical protein [uncultured organism]
Length = 192
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K +N ++G+GFI + G D+F+H SA A G EG+ +T++ + D NGK
Sbjct: 8 GKLKKWNAERGFGFIVADD---GGQDIFVHISAFARDG-RQPAEGEALTFEI-EPDRNGK 62
Query: 65 YSAENLKLVPKS 76
SA ++ V +
Sbjct: 63 RSAVRVRRVGDA 74
>gi|2073109|dbj|BAA19849.1| Y box protein 1 [Carassius auratus]
Length = 311
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 99 KG--AEAANVT 107
>gi|181486|gb|AAA35750.1| DNA-binding protein B [Homo sapiens]
Length = 364
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 101 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 158 KG--AEAANVT 166
>gi|148360277|ref|YP_001251484.1| cold shock domain family transporter protein [Legionella
pneumophila str. Corby]
gi|148282050|gb|ABQ56138.1| cold shock domain family protein [Legionella pneumophila str.
Corby]
Length = 73
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + +
Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKG- 59
Query: 64 KYSAENLKLVP 74
AE ++++
Sbjct: 60 -PQAEEVEVIK 69
>gi|255034693|ref|YP_003085314.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
fermentans DSM 18053]
gi|254947449|gb|ACT92149.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
18053]
Length = 63
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++RG++K++N KG+GFI PE G D+F+H + + + E V+Y+ +
Sbjct: 1 MNRGTVKFFNDTKGFGFIAPEN---GGSDIFVHTTGLNDD----IRENDSVSYEVEEGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+ ++
Sbjct: 54 G--LNAVNVTII 63
>gi|950340|gb|AAA79243.1| DNA-binding protein A [Homo sapiens]
Length = 342
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 93 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 150 KG--AEAANVT 158
>gi|332521005|ref|ZP_08397465.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
gi|332043535|gb|EGI79731.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
Length = 63
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EGS D F+H S + + + EG V +D +
Sbjct: 1 MAQGTVKFFNDSKGFGFITEEGS---DKDHFVHISGL----IDEVREGDAVEFDLQEGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--MNAVNVKVI 63
>gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296182380|gb|ADG99286.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
44985]
Length = 145
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KWY+ DKG+GF+T E GDDV++ SA+ AG+ L GQ+V +
Sbjct: 6 PTGKVKWYSADKGFGFLTQED----GDDVYVGSSAL-PAGVDELKPGQVVEFGMADGRRG 60
Query: 63 GKYSAENLKLVPKSS 77
A +++++ S
Sbjct: 61 --PQALSIRVLSTPS 73
>gi|238764623|ref|ZP_04625569.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
gi|238697213|gb|EEP89984.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
Length = 57
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G +KW++ KG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 6 TGLVKWFDAGKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIE 56
>gi|126208205|ref|YP_001053430.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
L20]
gi|126096997|gb|ABN73825.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 63
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N KG+GFIT + D+F H S + S G +L GQ V ++ + + SA
Sbjct: 2 KWFNSAKGFGFITSDNVEG---DIFAHFSEIQSEGYRSLKVGQKVQFELINGERG--ASA 56
Query: 68 ENLKLVP 74
+ LV
Sbjct: 57 AKISLVE 63
>gi|325287735|ref|YP_004263525.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324323189|gb|ADY30654.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
7489]
Length = 63
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N +KG+GFIT EGS G D+F+H S + + + EG V Y+ +
Sbjct: 1 MSKGTVKFFNDEKGFGFITEEGS---GKDIFVHISGL----VDEIREGDEVEYEVTEGKK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAANVRVL 63
>gi|242000494|ref|XP_002434890.1| PIN domain-containing RNA-binding protein, putative [Ixodes
scapularis]
gi|215498220|gb|EEC07714.1| PIN domain-containing RNA-binding protein, putative [Ixodes
scapularis]
Length = 315
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +D+F+H++A+ + ++ EG+ V +D V +
Sbjct: 19 GTVKWFNVKNGYGFINRNDTR---EDIFVHQTAITRNNPQKIMRSVGEGETVEFDVVVGE 75
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 76 KG--REAANVT 84
>gi|83592002|ref|YP_425754.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|83574916|gb|ABC21467.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
Length = 68
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+I W++ GYGFI P+ G D+ + A+ +GL +L +GQ V Y +
Sbjct: 1 MLTGTITWFDTINGYGFIRPDD---GGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRF 57
Query: 62 NGKYS 66
G +
Sbjct: 58 GGAMA 62
>gi|116248183|sp|Q61CX7|LIN28_CAEBR RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
protein 28
gi|309371318|emb|CAP31656.3| CBR-LIN-28 protein [Caenorhabditis briggsae AF16]
Length = 237
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y +
Sbjct: 55 GSCKWFNVSKGYGFVIDDN---TGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 111
Query: 65 YSAENLK 71
A +
Sbjct: 112 KEAYAVS 118
>gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens]
Length = 303
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L +L +G+ V +D V+ +
Sbjct: 93 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGE 149
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 150 KG--AEAANVT 158
>gi|25027451|ref|NP_737505.1| putative cold shock protein [Corynebacterium efficiens YS-314]
gi|23492733|dbj|BAC17705.1| putative cold shock protein [Corynebacterium efficiens YS-314]
Length = 127
Score = 71.6 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWY+P++G+GF+ S G+D F+ + + G+ L +GQ + +D+
Sbjct: 1 MPVGTVKWYDPERGFGFV----SNPGGEDCFVGKQVLPK-GVTELHQGQRIEFDFAAGRK 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRVKVLET 67
>gi|311256155|ref|XP_003126523.1| PREDICTED: DNA-binding protein A-like [Sus scrofa]
Length = 380
Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 102 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 158
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 159 KG--AEAANVT 167
>gi|194207608|ref|XP_001916443.1| PREDICTED: similar to rCG50488 [Equus caballus]
Length = 364
Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 101 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 158 KG--AEAANVT 166
>gi|297626985|ref|YP_003688748.1| Cold shock protein [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922750|emb|CBL57328.1| Cold shock protein [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 128
Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++++PDKG+GFIT + E +V+ + + G+ ++ GQ V + V
Sbjct: 1 MPSGRVRFFDPDKGFGFITKD---EGDGEVYFRANVL-PDGVTSVKRGQRVEFGIVDGRR 56
Query: 62 NGKYSAENLKLVPKSSN 78
A +++L+ +
Sbjct: 57 G--EQALSVELIDPPPS 71
>gi|160914513|ref|ZP_02076728.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991]
gi|158433671|gb|EDP11960.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991]
Length = 65
Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K +N +KGYGFIT E G D+F H S + G + V ++ V+ +
Sbjct: 2 QGKVKMFNQEKGYGFITRE----GGKDIFFHYSQLVMEGYKTIDPEASVEFELVETERGP 57
Query: 64 KYS 66
+
Sbjct: 58 QAQ 60
>gi|56800108|emb|CAI35156.1| Y box protein 2 [Mus musculus]
Length = 282
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 20 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 77 KG--AEAANVT 85
>gi|300779123|ref|ZP_07088981.1| CspA family cold shock transcriptional regulator
[Chryseobacterium gleum ATCC 35910]
gi|300504633|gb|EFK35773.1| CspA family cold shock transcriptional regulator
[Chryseobacterium gleum ATCC 35910]
Length = 64
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI+P D+F+H S + S ++ E V +D ++D
Sbjct: 1 MQQGTVKFFNEAKGFGFISPTD---GSKDIFVHSSGLDS---RSIRENDKVVFDVQKSDK 54
Query: 62 NGKYSAENLKL 72
+A N+KL
Sbjct: 55 G--LNAVNVKL 63
>gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ZONAB-B [Canis lupus familiaris]
Length = 372
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H +A+ L ++ +G+ V +D V+ +
Sbjct: 95 GTVKWFNVRNGYGFINRNDTK---EDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 152 KG--AEAANVT 160
>gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodytes]
Length = 319
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 57 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113
Query: 61 ANGKYSAENLK 71
K A N+
Sbjct: 114 KGAK--AANVT 122
>gi|281352187|gb|EFB27771.1| hypothetical protein PANDA_013847 [Ailuropoda melanoleuca]
Length = 163
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 49 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 106 KG--AEAANVT 114
>gi|301789934|ref|XP_002930376.1| PREDICTED: DNA-binding protein A-like [Ailuropoda melanoleuca]
Length = 335
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 58 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 115 KG--AEAANVT 123
>gi|254496062|ref|ZP_05108963.1| cold shock protein CspE [Legionella drancourtii LLAP12]
gi|254354704|gb|EET13338.1| cold shock protein CspE [Legionella drancourtii LLAP12]
Length = 68
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N KG+GF+ G D F+H SA+ +G L EG V +
Sbjct: 6 RGTVKWFNESKGFGFL-----ESGGKDYFVHFSAIQGSGFKTLAEGATVMFKASNGQKG- 59
Query: 64 KYSAENLKLV 73
AE +++V
Sbjct: 60 -PQAEEVEVV 68
>gi|291390788|ref|XP_002711897.1| PREDICTED: cold shock domain protein A short-like [Oryctolagus
cuniculus]
Length = 784
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60
G++KW+N KGYGFI S +DVF+H +A+ ++ +G+ V D V+
Sbjct: 572 GTVKWFNVKKGYGFIHRHDSK---EDVFVHHTAITKNNPRKYLHSVGDGETVELDVVEGV 628
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 629 KG--AEAANVT 637
>gi|182624210|ref|ZP_02951996.1| cold shock protein [Clostridium perfringens D str. JGS1721]
gi|177910624|gb|EDT72992.1| cold shock protein [Clostridium perfringens D str. JGS1721]
Length = 69
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
G +KW+N +K YGFI+ + GDDVF+H S V G +L EG+ V++D + +
Sbjct: 5 TGIVKWFNQEKCYGFISCD----EGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGEKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PMATNVQKL 69
>gi|194131800|gb|ACF33224.1| Y-box protein Lyb3 [Lethenteron japonicum]
Length = 171
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 65 GTVKWFNVKNGYGFINRNDTK---EDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 121
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 122 KG--AEAANVT 130
>gi|457262|gb|AAA36569.1| nuclease sensitive element binding protein-1 [Homo sapiens]
Length = 322
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 60 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 117 KG--AEAANVT 125
>gi|301166258|emb|CBW25833.1| cold shock-like protein [Bacteriovorax marinus SJ]
Length = 64
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+++ +KG+GFITPE G D+F+H + + S L EG V Y+ +
Sbjct: 1 METGKVKFFDQEKGFGFITPEN---GGKDIFVHITGIQSG---PLNEGDTVEYEVGEGLK 54
Query: 62 NGKYSAENLK 71
A N+
Sbjct: 55 G--PCAVNVS 62
>gi|148680545|gb|EDL12492.1| Y box protein 2 [Mus musculus]
Length = 268
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 6 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 62
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 63 KG--AEAANVT 71
>gi|291405168|ref|XP_002719041.1| PREDICTED: Y box binding protein 2 [Oryctolagus cuniculus]
Length = 275
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 13 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 69
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 70 KG--AEAANVT 78
>gi|332842519|ref|XP_001134851.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
Length = 319
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 57 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113
Query: 61 ANGKYSAENLK 71
K A N+
Sbjct: 114 KGAK--AANVT 122
>gi|90419542|ref|ZP_01227452.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
gi|90336479|gb|EAS50220.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
Length = 192
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ G D+ LH + + G EG V + Q +
Sbjct: 28 GHIKWFDVSKGFGFIVPDD---GGADILLHVTCLRRDGHATALEGARVVCEVQQGERG-- 82
Query: 65 YSAENL 70
A +
Sbjct: 83 LQAFRV 88
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KGYGF+T + E +D+F+H + G+ L GQ V + Q D G+
Sbjct: 121 VVKWFNRTKGYGFLT---TGEGTEDIFIHMETLRRFGMTELRPGQDVLVRFGQGDK-GRM 176
Query: 66 SAE 68
+AE
Sbjct: 177 AAE 179
>gi|326801255|ref|YP_004319074.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
gi|326552019|gb|ADZ80404.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
Length = 65
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW+N KG+GFI E G D+F+H V G+ + + V ++
Sbjct: 1 MKTGKVKWFNAQKGFGFIIQED----GTDIFVHFKDVKG-GIDAIKDNDRVEFEVADGRK 55
Query: 62 NGKYSAENLKLV 73
A N+K +
Sbjct: 56 G--QQAVNVKKI 65
>gi|184201477|ref|YP_001855684.1| cold shock protein [Kocuria rhizophila DC2201]
gi|183581707|dbj|BAG30178.1| cold shock protein [Kocuria rhizophila DC2201]
Length = 127
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF+ + G +VFLH SA+ G+ + G + +
Sbjct: 1 MPTGKVKWFDADKGFGFLATDD----GQEVFLHSSALPR-GVTTVKPGTRMDFGIADGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + ++ +
Sbjct: 56 G--AQALSATVLSAPPS 70
>gi|54293997|ref|YP_126412.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens]
gi|53753829|emb|CAH15294.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens]
gi|307609825|emb|CBW99342.1| hypothetical protein LPW_11201 [Legionella pneumophila 130b]
Length = 69
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + +
Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKG- 59
Query: 64 KYSAENLKLVP 74
AE ++++
Sbjct: 60 -PQAEEVEVIK 69
>gi|189499792|ref|YP_001959262.1| cold-shock DNA-binding domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189495233|gb|ACE03781.1| cold-shock DNA-binding domain protein [Chlorobium
phaeobacteroides BS1]
Length = 96
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59
M + +KW++ KGYGFI G+D+F+H SA+ S L + V ++ Q
Sbjct: 1 MSRKSKVKWFDGKKGYGFIVNPD---GGEDIFVHFSAIVSEQSFKVLNQDAEVEFEIDQT 57
Query: 60 DANGKYSAENL 70
A+N+
Sbjct: 58 QKG--MQAKNV 66
>gi|296106679|ref|YP_003618379.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
gi|295648580|gb|ADG24427.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
Length = 69
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + +
Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSDGFKTLPDGATVLFKMGKGQKG- 59
Query: 64 KYSAENLKLVP 74
AE ++++
Sbjct: 60 -PQAEEVEVIK 69
>gi|297572154|ref|YP_003697928.1| cold-shock DNA-binding domain protein [Arcanobacterium
haemolyticum DSM 20595]
gi|296932501|gb|ADH93309.1| cold-shock DNA-binding domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 143
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K+++ KG+GFI + G V++ +SAV G+ L G V Y
Sbjct: 21 PTGKVKFFDEQKGFGFIAGDD----GAQVYVAQSAV-PLGVK-LRPGTRVEYGVGDTRRG 74
Query: 63 GKYSAENLKLVPKSSN 78
+A ++ ++ K ++
Sbjct: 75 --PAALSVSVIKKETS 88
>gi|315654218|ref|ZP_07907126.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333]
gi|315657883|ref|ZP_07910763.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491253|gb|EFU80870.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333]
gi|315491680|gb|EFU81291.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 125
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KG+GF+ G++VFLH SA+ + +L G V Y V
Sbjct: 1 MPSGKVKWYDAVKGFGFVAGAD----GEEVFLHASAL-PENVVDLHPGTKVEYSVVDGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ +V K +
Sbjct: 56 G--RQAMNVTVVEKLPS 70
>gi|315605858|ref|ZP_07880890.1| cold-shock DNA-binding domain protein [Actinomyces sp. oral taxon
180 str. F0310]
gi|315312556|gb|EFU60641.1| cold-shock DNA-binding domain protein [Actinomyces sp. oral taxon
180 str. F0310]
Length = 165
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++++ D+G+GFI + G DVFLH SA+ + N G V Y
Sbjct: 41 MPTGKVRFFDADRGFGFIAGDD----GADVFLHSSALPAD-HPNPRVGSRVEYSVADGRK 95
Query: 62 NGKYSAENLKLVPKSSN 78
A +++ + ++++
Sbjct: 96 G--PQALSVRFLKETAS 110
>gi|147903761|ref|NP_001079367.1| nuclease-sensitive element-binding protein 1 [Xenopus laevis]
gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus laevis]
gi|76779926|gb|AAI06324.1| Ybx1 protein [Xenopus laevis]
Length = 303
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 96 KG--AEAANVT 104
>gi|140245|sp|P21573|YBOX1_XENLA RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=Y-box transcription factor; AltName:
Full=Y-box-binding protein 1; Short=YB-1
gi|214155|gb|AAA49715.1| DNA-binding protein [Xenopus laevis]
Length = 303
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 96 KG--AEAANVT 104
>gi|456238|emb|CAA51842.1| cold shock protein [Bacillus subtilis]
gi|740007|prf||2004289D cold shock protein
Length = 57
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +KG+G I E DDVF+H SA+ G L E Q V+++ V+ +
Sbjct: 1 VKWFNSEKGFGLIEVE----GQDDVFVHFSAIQGEGFKTLEESQAVSFEIVEGNRG--PQ 54
Query: 67 AEN 69
A N
Sbjct: 55 AAN 57
>gi|298345620|ref|YP_003718307.1| cold-shock DNA-binding domain-containing protein [Mobiluncus
curtisii ATCC 43063]
gi|304390691|ref|ZP_07372644.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298235681|gb|ADI66813.1| cold-shock DNA-binding domain protein [Mobiluncus curtisii ATCC
43063]
gi|304326447|gb|EFL93692.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 125
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ KG+GF+ G++VFLH SA+ + +L G V Y V
Sbjct: 1 MPSGKVKWYDAVKGFGFVAGAD----GEEVFLHASAL-PENVVDLHPGTKVEYSVVDGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A N+ +V K +
Sbjct: 56 G--RQAMNVTVVEKLPS 70
>gi|7498487|pir||T20510 hypothetical protein F02E9.2b - Caenorhabditis elegans
Length = 180
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y +
Sbjct: 24 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 80
Query: 65 YSAENLK 71
A +
Sbjct: 81 REAYAVS 87
>gi|68535487|ref|YP_250192.1| putative cold shock protein [Corynebacterium jeikeium K411]
gi|260579770|ref|ZP_05847627.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC
43734]
gi|68263086|emb|CAI36574.1| putative cold shock protein [Corynebacterium jeikeium K411]
gi|258602122|gb|EEW15442.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC
43734]
Length = 127
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ D+GYGF+ S +DV++ S V G+ L +GQ + Y+++
Sbjct: 1 MPTGKVKWYDADRGYGFV----SNPGDEDVYVG-SQVLPDGVTELVKGQRIEYEFIAGRR 55
Query: 62 NGK 64
+
Sbjct: 56 GPQ 58
>gi|308805262|ref|XP_003079943.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
gi|116058400|emb|CAL53589.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
Length = 125
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN------LTEGQLVTYDYV 57
RG +KW+N KG+G+ITP+ DVF+H+SA+ G T+G V +D
Sbjct: 12 RGKVKWFNCTKGFGYITPDDGE---PDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVE 68
Query: 58 -QNDANGKYSAENLKLVPKSS 77
++ + + A + + +
Sbjct: 69 HESPTDERLKAVCVTGIGGAP 89
>gi|291411891|ref|XP_002722201.1| PREDICTED: cold shock domain protein A [Oryctolagus cuniculus]
Length = 376
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 98 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 154
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 155 KG--AEAANVT 163
>gi|146312143|ref|YP_001177217.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
638]
gi|145319019|gb|ABP61166.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
Length = 72
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KWY DKG+GFI+P G D+ +H S + L EGQ V Y +
Sbjct: 6 RGLVKWYKEDKGFGFISPLD---GGKDISVHVSNLKGDDCQTLFEGQKVEYTIYNGNKG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PAASNV 67
>gi|197245601|gb|AAI68507.1| Ybx1 protein [Danio rerio]
Length = 310
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|221116635|ref|XP_002154000.1| PREDICTED: similar to predicted protein, partial [Hydra
magnipapillata]
Length = 719
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 449 GTVKWFNVRNGYGFIHRNDTQ---NDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVEGV 505
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 506 KG--HEAINVT 514
>gi|194751983|ref|XP_001958302.1| GF10852 [Drosophila ananassae]
gi|190625584|gb|EDV41108.1| GF10852 [Drosophila ananassae]
Length = 347
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 62 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 118
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 119 EKGNE--AANVT 128
>gi|194333568|ref|YP_002015428.1| cold-shock DNA-binding domain-containing protein
[Prosthecochloris aestuarii DSM 271]
gi|194311386|gb|ACF45781.1| cold-shock DNA-binding domain protein [Prosthecochloris aestuarii
DSM 271]
Length = 95
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59
M + +KW++ KGYGFI + E G+D+F+H SA+ S L + V ++ Q
Sbjct: 1 MPIKSKVKWFDGKKGYGFI---LNPEGGEDIFVHFSAIVSDLTFKVLNQDADVEFELDQT 57
Query: 60 DANGKYSAENLKLVPKSS 77
A N++ + +
Sbjct: 58 QKG--LQARNVRELSAGT 73
>gi|255586301|ref|XP_002533802.1| cellular nucleic acid binding protein, putative [Ricinus
communis]
gi|223526275|gb|EEF28589.1| cellular nucleic acid binding protein, putative [Ricinus
communis]
Length = 266
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
RG + ++ KG+GFI P+ G+D+F+H SA+ S G +L E +V + +D +
Sbjct: 15 RGKVVRFSDRKGFGFIKPDD---GGEDLFVHHSAIKSDGRYRSLAEDDVVEFTVSLSD-D 70
Query: 63 GKYSAENLK 71
KY A ++
Sbjct: 71 NKYQAVDVT 79
>gi|313221374|emb|CBY32128.1| unnamed protein product [Oikopleura dioica]
gi|313241319|emb|CBY33595.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58
G++KW+N +G+GFI G DVFLH+S V +G + L G+ V +D Q
Sbjct: 86 TGTVKWFNISRGFGFIERND---GGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVAQ 142
Query: 59 NDANGKYSAE 68
+ A
Sbjct: 143 GAKGPEAVAV 152
>gi|332812662|ref|XP_001136258.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
Length = 325
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 62 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 119 KG--AEAANVT 127
>gi|20803992|emb|CAD31569.1| PUTATIVE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium
loti R7A]
Length = 200
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KWYNP+KG+GFI PE D+F+H +A+ +GL L EGQ V Q
Sbjct: 138 TVKWYNPEKGFGFIAPENGE---KDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKG 191
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+ W+N KG+GF+ G +LH + +AG ++EG + ++ G
Sbjct: 47 VVWFNTSKGFGFV----KLPQGIQAYLHIRVLEAAGSRGVSEGTRLKVTTEESPRGGHQV 102
Query: 67 AENLKL 72
A+ L++
Sbjct: 103 AQVLEV 108
>gi|83649125|ref|YP_437560.1| cold shock protein [Hahella chejuensis KCTC 2396]
gi|83637168|gb|ABC33135.1| Cold shock protein [Hahella chejuensis KCTC 2396]
Length = 71
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +KW+N KGYGFI DVF+H SA+ G L G V Y +
Sbjct: 6 RTTGMVKWFNNAKGYGFIESAEG-----DVFVHYSAIRKDGYKTLRAGSHVEYQVQHSSK 60
Query: 62 N 62
Sbjct: 61 G 61
>gi|7498486|pir||T20509 hypothetical protein F02E9.2a - Caenorhabditis elegans
Length = 211
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y +
Sbjct: 55 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 111
Query: 65 YSAENLK 71
A +
Sbjct: 112 REAYAVS 118
>gi|74961778|sp|P91599|LIN28_CAERE RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
protein 28
gi|1763346|gb|AAC47477.1| LIN-28 [Caenorhabditis remanei]
Length = 214
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + + +D+F+H+S + G +L EG+ V+Y +
Sbjct: 51 GSCKWFNVSKGYGFVIDD---ITREDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 107
Query: 65 YSAENLK 71
A +
Sbjct: 108 REAYAVS 114
>gi|150024384|ref|YP_001295210.1| cold shock protein [Flavobacterium psychrophilum JIP02/86]
gi|149770925|emb|CAL42390.1| Probable cold shock protein [Flavobacterium psychrophilum
JIP02/86]
Length = 66
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KGYGFIT + E+G D+F+H S + + L EG V+Y+ +
Sbjct: 1 MRTGTVKFFNESKGYGFITDD---ETGKDIFVHASGIKAE---ELREGDKVSYE-EEEGR 53
Query: 62 NGKYSAENLKL 72
G+ +A+ + +
Sbjct: 54 KGRVAAQVVVI 64
>gi|194246689|ref|YP_002004328.1| Cold shock-like protein [Candidatus Phytoplasma mali]
gi|193807046|emb|CAP18482.1| Cold shock-like protein [Candidatus Phytoplasma mali]
Length = 85
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +W+N DKG+GF+ S D+F H++ + G +L EG+ V + VQ +
Sbjct: 14 KGVCRWFNKDKGFGFLQKLDS--DSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGEKG- 70
Query: 64 KYSAENL 70
A +
Sbjct: 71 -PQAIEI 76
>gi|91218197|ref|ZP_01255145.1| cold shock protein [Psychroflexus torquis ATCC 700755]
gi|91183655|gb|EAS70050.1| cold shock protein [Psychroflexus torquis ATCC 700755]
Length = 63
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFIT EG D F+H S + + + EG V +D + +
Sbjct: 1 MNKGTVKFFNDTKGFGFITEEGV---DKDHFVHASGL----IDEIREGDEVEFDLQEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVL 63
>gi|1083796|pir||S48055 RYB-a protein - rat
Length = 291
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 84 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 141 KG--AEAANVT 149
>gi|254503760|ref|ZP_05115911.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
gi|222439831|gb|EEE46510.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
DFL-11]
Length = 66
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ +G G I PE GDD+ + +A+ +G+ +L EGQLV +D
Sbjct: 1 MLHGNVKWFDKGRGVGTIEPED----GDDILVDITALRRSGIDSLKEGQLVAFDLEW--R 54
Query: 62 NGKYSAENLKLV 73
G+ AE+LK++
Sbjct: 55 RGQMVAEDLKVL 66
>gi|313901260|ref|ZP_07834747.1| cold shock protein CspB [Clostridium sp. HGF2]
gi|312953868|gb|EFR35549.1| cold shock protein CspB [Clostridium sp. HGF2]
Length = 65
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +K +N +KGYGFIT E G DVF H S + G + V +D V+ D
Sbjct: 2 RGKVKMFNQEKGYGFITLED----GKDVFFHYSQLMMEGFKTIDADAEVEFDLVETDRG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -LQAHNI 62
>gi|255038433|ref|YP_003089054.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
fermentans DSM 18053]
gi|254951189|gb|ACT95889.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
18053]
Length = 63
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KGYGFI P D+F+H S + + E V+Y+
Sbjct: 1 MAEGTVKFFNESKGYGFIQPSNGE---KDIFVHVSGLQDD----IRENDKVSYEVENGRK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVI 63
>gi|163755667|ref|ZP_02162786.1| cold shock protein [Kordia algicida OT-1]
gi|161324580|gb|EDP95910.1| cold shock protein [Kordia algicida OT-1]
Length = 69
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG + + F+H S + + + EG V +D +
Sbjct: 7 MSKGTVKFFNDTKGFGFITEEG---TNTEHFVHISGL----IDEVREGDEVEFDLQEGRK 59
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 60 G--LNAVNVKVI 69
>gi|300932619|ref|ZP_07147875.1| cold shock protein [Corynebacterium resistens DSM 45100]
Length = 127
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ D+GYGF+ S +DV++ S V G+ L +GQ + Y++V
Sbjct: 1 MPTGRVKWYDADRGYGFV----SNPGDEDVYVG-SQVLPDGVDELVKGQRMEYEFVAGRR 55
Query: 62 NGKYSAENLKLVPKSS 77
++ + ++
Sbjct: 56 G--PQVLSITHLDEAP 69
>gi|291333272|gb|ADD92980.1| cold shock protein [uncultured archaeon MedDCM-OCT-S04-C163]
Length = 63
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI E GDD+F+H + V + +G V ++ +
Sbjct: 1 MPQGTVKWFNQVKGFGFIEQE----GGDDLFVHITQVEGE----INDGDTVEFEIGEGPK 52
Query: 62 NGKYSAENLKLVP 74
+A N+ V
Sbjct: 53 G--PNAINVSKVE 63
>gi|305664855|ref|YP_003861142.1| cold shock protein [Maribacter sp. HTCC2170]
gi|88707977|gb|EAR00216.1| cold shock protein [Maribacter sp. HTCC2170]
Length = 64
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KGYGFIT +GS +D F+H S + + + EG +V ++ Q
Sbjct: 1 MSKGTVKFFNDSKGYGFITEDGS---NEDHFVHISGL----IDEVREGDVVEFELQQGKK 53
Query: 62 NGKYSAENLKLVP 74
+A N+K+V
Sbjct: 54 G--LNAVNVKVVD 64
>gi|172058435|ref|YP_001814895.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|171990956|gb|ACB61878.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
255-15]
Length = 66
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +KW+N +KGYGFI T DVF+H SA+ + G +L EG+ V ++ V D
Sbjct: 1 MEQGKVKWFNAEKGYGFIE----TSDAKDVFVHFSAIQADGYKSLEEGEEVEFEIVDGDR 56
Query: 62 NGKYSAENLKLV 73
A N+ +
Sbjct: 57 G--PQAANVSKL 66
>gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus]
Length = 291
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 84 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 141 KG--AEAANVT 149
>gi|154507896|ref|ZP_02043538.1| hypothetical protein ACTODO_00381 [Actinomyces odontolyticus ATCC
17982]
gi|293190360|ref|ZP_06608792.1| cold-shock domain protein [Actinomyces odontolyticus F0309]
gi|153797530|gb|EDN79950.1| hypothetical protein ACTODO_00381 [Actinomyces odontolyticus ATCC
17982]
gi|292820944|gb|EFF79899.1| cold-shock domain protein [Actinomyces odontolyticus F0309]
Length = 125
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++++ D+G+GFI + G DVFLH SA+ + N G V Y
Sbjct: 1 MPTGKVRFFDADRGFGFIAGDD----GADVFLHSSALPAD-HANPRVGARVEYSVADGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++ + ++++
Sbjct: 56 G--PQALSVRFLKETAS 70
>gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
Length = 305
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G + W+N KG+GF+T + DVF+H+S + + G +L + + V ++ + +
Sbjct: 44 YKGVVNWFNVAKGFGFVTRDD---GVGDVFVHQSDIYAEGFRSLRDQEPVEFEL-EPMGD 99
Query: 63 GKYSAENLK 71
G+Y A +
Sbjct: 100 GRYKAVKVT 108
>gi|319951935|ref|YP_004163202.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
gi|319420595|gb|ADV47704.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
Length = 63
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFIT EGS+ +D F+H S + + + EG +V ++ Q
Sbjct: 1 MNKGTVKFFNDSKGFGFITEEGSS---EDHFVHISGL----VDEIREGDVVEFELQQGKK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVL 63
>gi|217976725|ref|YP_002360872.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
gi|217502101|gb|ACK49510.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
Length = 217
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ G++KW++ +KG+GF+ G DVF+H S + +G+ NL EGQ V+ V
Sbjct: 150 ISVTGTVKWFDDNKGFGFVQSND---GGKDVFVHISILGPSGVQNLAEGQAVSMRVVDTP 206
Query: 61 AN 62
Sbjct: 207 KG 208
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+ DKG+GF+ D FLH A+ +AG + G + +
Sbjct: 55 VVKWFKGDKGFGFVE---LGNGTGDAFLHIGALQAAGYETVPPGAKLKVNVSNGMKG--- 108
Query: 66 SAENLKLVP 74
A+ +++
Sbjct: 109 -AQVTRVLE 116
>gi|23464629|ref|NP_695232.1| cold shock protein [Bifidobacterium longum NCC2705]
gi|189438864|ref|YP_001953945.1| cold shock protein [Bifidobacterium longum DJO10A]
gi|213691589|ref|YP_002322175.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|227546726|ref|ZP_03976775.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239620702|ref|ZP_04663733.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|296454610|ref|YP_003661753.1| putative cold-shock DNA-binding domain-containing protein
[Bifidobacterium longum subsp. longum JDM301]
gi|317481715|ref|ZP_07940747.1| cold-shock' DNA-binding domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|322689677|ref|YP_004209411.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
gi|322691638|ref|YP_004221208.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|23325186|gb|AAN23868.1| cold shock protein [Bifidobacterium longum NCC2705]
gi|189427299|gb|ACD97447.1| Cold shock protein [Bifidobacterium longum DJO10A]
gi|213523050|gb|ACJ51797.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|227212688|gb|EEI80569.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239516278|gb|EEQ56145.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|296184041|gb|ADH00923.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
longum subsp. longum JDM301]
gi|316916829|gb|EFV38219.1| cold-shock' DNA-binding domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456494|dbj|BAJ67116.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|320457677|dbj|BAJ68298.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|320461013|dbj|BAJ71633.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
Length = 79
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
+ +G++K++ KG+GFI P+ G+DVF+H + + G L EG V Y
Sbjct: 1 MAQGTVKFFLAKKGFGFIQPDD---GGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57
Query: 58 QNDANGKYSAENLKLVPKS 76
+ A+++ +
Sbjct: 58 SSGKG--TQAKDVVKLSSG 74
>gi|309777855|ref|ZP_07672801.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914416|gb|EFP60210.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 65
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +K +N +KGYGFIT E G DVF H S + G + V +D V+ D
Sbjct: 2 RGKVKMFNQEKGYGFITLED----GKDVFFHYSQLMMEGFKTIDADAEVEFDVVETDRG- 56
Query: 64 KYSAENL 70
A N+
Sbjct: 57 -LQAHNI 62
>gi|308504936|ref|XP_003114651.1| CRE-LIN-28 protein [Caenorhabditis remanei]
gi|308258833|gb|EFP02786.1| CRE-LIN-28 protein [Caenorhabditis remanei]
Length = 208
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + + +D+F+H+S + G +L EG+ V+Y +
Sbjct: 24 GSCKWFNVSKGYGFVIDD---ITREDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 80
Query: 65 YSAENLK 71
A +
Sbjct: 81 REAYAVS 87
>gi|29477111|gb|AAH50156.1| Y box binding protein 1 [Danio rerio]
Length = 309
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|296227166|ref|XP_002759249.1| PREDICTED: Y-box-binding protein 2-like, partial [Callithrix
jacchus]
Length = 253
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI+ + +DVF+H++A+ L ++ +G+ V +D V +
Sbjct: 97 GTVKWFNVRNGYGFISRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVGGE 153
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 154 KG--PEAANVT 162
>gi|152998000|ref|YP_001342835.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
MWYL1]
gi|150838924|gb|ABR72900.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
MWYL1]
Length = 85
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW+N KG GFI E DVF+H ++ G +L +GQLV++ D
Sbjct: 5 TGKVKWFNDAKGVGFIKRE----EDSDVFVHYKSIVCDGHKSLRKGQLVSFVLSTTDFG- 59
Query: 64 KYSAENLKLVPKS 76
A +++L ++
Sbjct: 60 -LQAMDVRLEKEA 71
>gi|158423560|ref|YP_001524852.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
gi|158330449|dbj|BAF87934.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
Length = 192
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++ KGYGFI P+ G DV +H + + G EG + + V+
Sbjct: 31 GAVKWFDAAKGYGFIVPDD---GGPDVLVHVTCLRRDGFTTAMEGARIVCEAVRRSKG-- 85
Query: 65 YSAENL 70
A +
Sbjct: 86 LQAFRV 91
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R ++KW+N +G+GF++ E D+F+H + GL L GQ V Y
Sbjct: 120 ERATVKWFNRMRGFGFLS---KGEGTPDIFVHMETLRQQGLTELRPGQSVLVRYGDGPKG 176
Query: 63 GKYSAENLK 71
A +K
Sbjct: 177 --LMATEVK 183
>gi|119503292|ref|ZP_01625376.1| cold shock protein, CspA family-like protein [marine gamma
proteobacterium HTCC2080]
gi|119460938|gb|EAW42029.1| cold shock protein, CspA family-like protein [marine gamma
proteobacterium HTCC2080]
Length = 138
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G+IKW+N KG+GFI + G +VF+H V ++ +GQ V Y +D
Sbjct: 74 HEGNIKWFNATKGFGFIVGDD----GAEVFVHYRNVEGLTKRSIKQGQRVAYSVRASDRG 129
Query: 63 GKYSAENLKLV 73
AE +K V
Sbjct: 130 --PQAEGVKAV 138
>gi|2739396|gb|AAB94634.1| Y-box protein [Drosophila melanogaster]
Length = 359
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H+SA+A+ + ++ +G++V +D V +
Sbjct: 64 TGTVKWFNVKSGYGFINRNDTR---EDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 121 KGNE--AANVT 129
>gi|227487732|ref|ZP_03918048.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542371|ref|ZP_03972420.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866]
gi|227092234|gb|EEI27546.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181569|gb|EEI62541.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866]
Length = 129
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+PDKG+GF S +DV + +S + G+ L GQ + +D+ +
Sbjct: 1 MPIGKVKWYDPDKGFGF----ASNPGQEDVHISKSVL-PEGVDTLHPGQRIEFDFAASGR 55
Query: 62 NGK 64
+
Sbjct: 56 GPQ 58
>gi|89068841|ref|ZP_01156224.1| cold shock DNA-binding domain protein [Oceanicola granulosus
HTCC2516]
gi|89045611|gb|EAR51674.1| cold shock DNA-binding domain protein [Oceanicola granulosus
HTCC2516]
Length = 171
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KW++P KG+GFI E G D+ LH + + + G ++ +G + + Q+
Sbjct: 1 MTVTGTVKWFDPAKGFGFIVAED---GGPDILLHANVLRNFGQSSVADGSGIVVEV-QDT 56
Query: 61 ANGKYSAENLKLVPKS 76
GK + ++L P
Sbjct: 57 PRGKQAVAVVELTPPE 72
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVF+H + +GL +L G+ ++ + GK
Sbjct: 99 RVKWFDKGKGFGFANVFGL---AEDVFVHIEVLRRSGLSDLQPGEAISLRV-MDGKRGKM 154
Query: 66 S 66
+
Sbjct: 155 A 155
>gi|149610695|ref|XP_001517390.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
Length = 223
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 62 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 119 KG--AEAANVT 127
>gi|194131842|gb|ACF33226.1| Y-box protein Lyb1 [Lethenteron japonicum]
Length = 331
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D V+ +
Sbjct: 27 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGE 83
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 84 KG--AEAANVT 92
>gi|9653686|gb|AAB46889.2| TSH receptor suppressor element-binding protein-1 [Rattus sp.]
Length = 322
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|54024961|ref|YP_119203.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54016469|dbj|BAD57839.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 122
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ W++ +KG+GFITP+ + VF+ A+ + G L G V Y + A +
Sbjct: 54 GTVAWFDAEKGFGFITPDDRS---PAVFVEFHAIEAVGYRTLVAGGPVVYRAEETKAGPE 110
Query: 65 YSAE 68
A
Sbjct: 111 AVAV 114
>gi|312078159|ref|XP_003141617.1| cold-shock DNA-binding domain-containing protein [Loa loa]
gi|307763216|gb|EFO22450.1| cold-shock DNA-binding domain-containing protein [Loa loa]
Length = 199
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH-----RSAVASAGLFNLTEGQLVTYDYVQN 59
G+ KW+N KGYGFITP+ + GDDVF+H S + G +L G+ V + +
Sbjct: 11 GTCKWFNVLKGYGFITPD---QGGDDVFVHQASEIFSELNMDGFRSLDAGERVRFVIRKR 67
Query: 60 DANGKYSAEN 69
+ +A
Sbjct: 68 SEGNEATAVV 77
>gi|291457446|ref|ZP_06596836.1| conserved domain protein [Bifidobacterium breve DSM 20213]
gi|51094320|gb|AAT95330.1| CspA [Bifidobacterium breve UCC2003]
gi|159024131|gb|ABW87310.1| cold shock protein [Bifidobacterium breve]
gi|291381281|gb|EFE88799.1| conserved domain protein [Bifidobacterium breve DSM 20213]
Length = 79
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
+ +G++K++ KG+GFI P+ G+DVF+H + + G L EG V Y
Sbjct: 1 MAQGTVKFFLAKKGFGFIQPDD---GGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57
Query: 58 QNDANGKYSAENLKLVPKS 76
+ A+ + +
Sbjct: 58 PSGKG--TQAKEVVKLSSG 74
>gi|328957375|ref|YP_004374761.1| cold shock protein CspB [Carnobacterium sp. 17-4]
gi|328673699|gb|AEB29745.1| cold shock protein CspB [Carnobacterium sp. 17-4]
Length = 68
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G++KW++ +KGYGFI +D+F+H + + +L+ GQ V+++ ++
Sbjct: 1 MEQGTVKWFSNEKGYGFIE----YNETEDIFIHFTGIDNGEDFKSLSSGQHVSFEILEGA 56
Query: 61 ANGKYSAENLKLVP 74
A + +V
Sbjct: 57 RG--PQATKVIVVD 68
>gi|226474410|emb|CAX71691.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|1763348|gb|AAC47478.1| LIN-28 [Caenorhabditis remanei]
Length = 239
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS KW+N KGYGF+ + + +D+F+H+S + G +L EG+ V+Y +
Sbjct: 55 GSCKWFNVSKGYGFVIDD---ITREDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 111
Query: 65 YSAENLK 71
A +
Sbjct: 112 REAYAVS 118
>gi|227548331|ref|ZP_03978380.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291]
gi|227079649|gb|EEI17612.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291]
Length = 127
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ DKG+GF S +DVF+ + + G+ L GQ + +D+
Sbjct: 1 MPVGKVKWYDADKGFGF----ASNPGDEDVFVGKKVL-PEGVEELVAGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRVKVLDT 67
>gi|116511520|ref|YP_808736.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
subsp. cremoris SK11]
gi|125624636|ref|YP_001033119.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
MG1363]
gi|116107174|gb|ABJ72314.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
cremoris SK11]
gi|124493444|emb|CAL98418.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071427|gb|ADJ60827.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 66
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKGYGFI E DVF + ++ G EGQ VT+D
Sbjct: 1 MINGTVKWFNMDKGYGFIITED----MQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTAR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 GRY--ASNIHKV 66
>gi|313236956|emb|CBY12203.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQN 59
G++KW+N +G+GFI G DVFLH+S V +G + L G+ V +D Q
Sbjct: 87 GTVKWFNISRGFGFIERND---GGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVAQG 143
Query: 60 DANGKYSAE 68
+ A
Sbjct: 144 AKGPEAVAV 152
>gi|187607756|ref|NP_001119929.1| nuclease-sensitive element-binding protein 1 isoform 1 [Danio
rerio]
gi|118763928|gb|AAI28886.1| Y box binding protein 1 [Danio rerio]
gi|169159049|emb|CAQ15227.1| Y box binding protein 1 [Danio rerio]
Length = 309
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|18859137|ref|NP_571695.1| nuclease-sensitive element-binding protein 1 isoform 2 [Danio
rerio]
gi|3695368|gb|AAC62774.1| zfY1 [Danio rerio]
gi|169642049|gb|AAI60650.1| Y box binding protein 1 [Danio rerio]
Length = 310
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|300770548|ref|ZP_07080427.1| competence factor transporter ComB [Sphingobacterium spiritivorum
ATCC 33861]
gi|300763024|gb|EFK59841.1| competence factor transporter ComB [Sphingobacterium spiritivorum
ATCC 33861]
Length = 63
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFITP+ DVF+H + + + + EG VTY+ +
Sbjct: 1 MNTGTVKFFNETKGFGFITPQD---GSADVFVHTTGLKN----QVREGDEVTYEVERTPK 53
Query: 62 NGKYSAENLKL 72
+A N++L
Sbjct: 54 G--LNAINVRL 62
>gi|224080514|ref|XP_002194901.1| PREDICTED: Y box binding protein 1 [Taeniopygia guttata]
Length = 324
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 58 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 115 KG--AEAANVT 123
>gi|61367907|gb|AAX43065.1| nuclease sensitive element binding protein 1 [synthetic construct]
gi|61369330|gb|AAX43318.1| nuclease sensitive element binding protein 1 [synthetic construct]
Length = 325
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus norvegicus]
Length = 326
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|988283|gb|AAA75476.1| mYB-1b [Mus musculus]
Length = 322
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|130488167|ref|NP_001076254.1| nuclease-sensitive element-binding protein 1 [Oryctolagus
cuniculus]
gi|75069491|sp|Q28618|YBOX1_RABIT RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1; AltName: Full=p50
gi|608518|gb|AAA66069.1| p50 [Oryctolagus cuniculus]
Length = 324
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|319955744|ref|YP_004167011.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
gi|319424404|gb|ADV51513.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
Length = 63
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT +G D F+H S + + + EG +V +D +
Sbjct: 1 MSKGTVKFFNDTKGFGFITEDGV---DRDHFVHISGL----IDEIREGDVVEFDLEEGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVL 63
>gi|296207663|ref|XP_002750741.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
[Callithrix jacchus]
Length = 323
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 60 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 117 KG--AEAANVT 125
>gi|163760322|ref|ZP_02167405.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
gi|162282721|gb|EDQ33009.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
Length = 191
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KG+GFI P+ +DV LH + + G + EG + + + +
Sbjct: 26 TGVIKWFDVAKGFGFIIPDN---GMEDVLLHVTCLRRDGYQTVLEGTRIVCEIQKRERG 81
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N KG+GF+T E +D+F+H + GL L GQ+V + +
Sbjct: 117 ERAIVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRYGLAELRPGQVVLVRFGNGEK- 172
Query: 63 GKYSAE 68
G +AE
Sbjct: 173 GLMAAE 178
>gi|56754985|gb|AAW25675.1| SJCHGC00971 protein [Schistosoma japonicum]
Length = 250
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|13475110|ref|NP_106674.1| cold-shock protein [Mesorhizobium loti MAFF303099]
gi|14025861|dbj|BAB52460.1| cold-shock protein [Mesorhizobium loti MAFF303099]
Length = 68
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++KWYNP KG+GFI PE D+F+H +A+ +GL L EGQ V Q
Sbjct: 1 MESEGTVKWYNPQKGFGFIAPENGE---KDIFVHATALTRSGLSMLMEGQKVFVQCGQGK 57
Query: 61 AN 62
Sbjct: 58 KG 59
>gi|116334042|ref|YP_795569.1| cold shock protein [Lactobacillus brevis ATCC 367]
gi|116099389|gb|ABJ64538.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC
367]
Length = 74
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K YN +G+GFIT T + DVF++ + + G L GQ V + VQ
Sbjct: 1 MLTGKVKSYNEQRGFGFIT----TPADGDVFVYYTGIIGEGFRKLEAGQTVQFVIVQGMR 56
Query: 62 NGKYSAENLKLVPKSS 77
A + V +S
Sbjct: 57 G--PQAAKVTPVVTAS 70
>gi|222624666|gb|EEE58798.1| hypothetical protein OsJ_10341 [Oryza sativa Japonica Group]
Length = 233
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K ++ G+GFITP+ G+D+F+H+S++ +L + ++ + +G
Sbjct: 7 KGTVKGFDATNGFGFITPDD---DGEDLFIHQSSLKFDDYRSLNDSDVIELSVG-SGNDG 62
Query: 64 KYSAENLKLV 73
+ A ++ +
Sbjct: 63 RNKAVDVTAL 72
>gi|85057350|ref|YP_456266.1| cold shock protein [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789455|gb|ABC65187.1| cold shock protein [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 74
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
+G+ +W++ DKGYGFI + G D+F+H S++ + G L E V + + D
Sbjct: 6 EQGTCRWFSKDKGYGFI----ISADGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61
Query: 61 ANGKYSAENLKLVPK 75
A ++ +V +
Sbjct: 62 RG--AQAVDVVVVNE 74
>gi|306835559|ref|ZP_07468572.1| cold-shock domain family protein [Corynebacterium accolens ATCC
49726]
gi|304568559|gb|EFM44111.1| cold-shock domain family protein [Corynebacterium accolens ATCC
49726]
Length = 126
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ S +DV++ R+ + G+ + GQ + +D+
Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRNVLPQ-GVEEIFPGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A ++++ K
Sbjct: 56 G--PQALRVRVLDK 67
>gi|332293257|ref|YP_004431866.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332171343|gb|AEE20598.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 63
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG D F+H S + + + EG V +D + +
Sbjct: 1 MSKGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----IDEIREGDEVEFDLKEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVI 63
>gi|328860156|gb|EGG09263.1| hypothetical protein MELLADRAFT_104398 [Melampsora
larici-populina 98AG31]
Length = 334
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDA 61
+G K++N KG+GFI + +VF+H +++ G +L EG+ V Y
Sbjct: 31 KGVCKFFNSQKGFGFINDDHPDELGNQEVFVHYTSIGGKGGFRSLAEGEEVEYVVSPGHK 90
Query: 62 NGKYSAENLK 71
+ A +
Sbjct: 91 G--FQATEVT 98
>gi|254520602|ref|ZP_05132658.1| cold shock protein [Clostridium sp. 7_2_43FAA]
gi|226914351|gb|EEH99552.1| cold shock protein [Clostridium sp. 7_2_43FAA]
Length = 69
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
+ G++KWY+ +KGYGFI S G+DVF+H S + G +L EG+ +T+D +N+
Sbjct: 4 YTGTVKWYSMEKGYGFI----SCNEGNDVFVHHSQIKEKGPEKDLHEGENITFDIQENEK 59
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 60 G--PMAVNVQKL 69
>gi|195428579|ref|XP_002062350.1| GK16710 [Drosophila willistoni]
gi|194158435|gb|EDW73336.1| GK16710 [Drosophila willistoni]
Length = 344
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 48 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 104
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 105 EKGNE--AANVT 114
>gi|182678504|ref|YP_001832650.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182634387|gb|ACB95161.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 224
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW++ +KG+GF+ G DVF+H S + S+G+ +L EGQ VT V
Sbjct: 160 TGTVKWFDDNKGFGFVQSND---GGKDVFVHISILGSSGVQHLAEGQAVTMRVVDTPKG 215
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+ DKG+GF+ + D FLH A+ +AG ++ G + +
Sbjct: 63 IVKWFKGDKGFGFVE---LSNGAGDAFLHIGALQAAGYESVPPGAKLKVNVGNGMKG--- 116
Query: 66 SAENLKLVP 74
A+ +++
Sbjct: 117 -AQVTRVLE 124
>gi|27807361|ref|NP_777240.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
gi|34098946|ref|NP_004550.2| nuclease-sensitive element-binding protein 1 [Homo sapiens]
gi|332248504|ref|XP_003273402.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Nomascus
leucogenys]
gi|332808655|ref|XP_525693.3| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
troglodytes]
gi|54040030|sp|P67808|YBOX1_BOVIN RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|54040031|sp|P67809|YBOX1_HUMAN RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|162983|gb|AAA30497.1| transcription factor EF1(A) [Bos taurus]
gi|454152|gb|AAA20871.1| similar to dbpB protein [Homo sapiens]
gi|12803207|gb|AAH02411.1| Y box binding protein 1 [Homo sapiens]
gi|14714588|gb|AAH10430.1| Y box binding protein 1 [Homo sapiens]
gi|15929560|gb|AAH15208.1| Y box binding protein 1 [Homo sapiens]
gi|23468206|gb|AAH38384.1| Y box binding protein 1 [Homo sapiens]
gi|41350935|gb|AAH65571.1| Y box binding protein 1 [Homo sapiens]
gi|47125298|gb|AAH70084.1| Y box binding protein 1 [Homo sapiens]
gi|47940506|gb|AAH71708.1| Y box binding protein 1 [Homo sapiens]
gi|58477789|gb|AAH90038.1| Y box binding protein 1 [Homo sapiens]
gi|61359169|gb|AAX41678.1| nuclease sensitive element binding protein 1 [synthetic construct]
gi|68534659|gb|AAH98435.1| Y box binding protein 1 [Homo sapiens]
gi|76779237|gb|AAI06046.1| Y box binding protein 1 [Homo sapiens]
gi|86821283|gb|AAI05364.1| Y box binding protein 1 [Bos taurus]
gi|119627554|gb|EAX07149.1| Y box binding protein 1, isoform CRA_b [Homo sapiens]
gi|123981412|gb|ABM82535.1| Y box binding protein 1 [synthetic construct]
gi|123996253|gb|ABM85728.1| Y box binding protein 1 [synthetic construct]
gi|168277900|dbj|BAG10928.1| nuclease sensitive element-binding protein 1 [synthetic construct]
gi|296488844|gb|DAA30957.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
Length = 324
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|340419|gb|AAA61308.1| Y box binding protein-1 [Homo sapiens]
Length = 317
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--EEAANVT 126
>gi|293345053|ref|XP_002725927.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 3 [Rattus
norvegicus]
gi|293356924|ref|XP_002729026.1| PREDICTED: lin-28 homolog B isoform 2 [Rattus norvegicus]
gi|149046920|gb|EDL99668.1| rCG58531, isoform CRA_b [Rattus norvegicus]
Length = 316
Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 74 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 133
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ N
Sbjct: 134 PKGL----ESIRVTGPGGN 148
>gi|255535684|ref|YP_003096055.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10]
gi|255341880|gb|ACU07993.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10]
Length = 63
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFITP G+D+F+H S V + E VTY+ Q +
Sbjct: 1 MQEGTVKFFNETKGFGFITPLN---GGEDIFVHTSGVN----TKIRENDKVTYEVQQGNK 53
Query: 62 NGKYSAENLKLV 73
+A N+KLV
Sbjct: 54 G--LNAVNVKLV 63
>gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_a [Rattus norvegicus]
Length = 305
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 99 KG--AEAANVT 107
>gi|39939157|ref|NP_950923.1| cold shock protein [Onion yellows phytoplasma OY-M]
gi|39722266|dbj|BAD04756.1| cold shock protein [Onion yellows phytoplasma OY-M]
Length = 74
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
+G+ +W++ DKGYGFI + G D+F+H S++ + G L E V + + D
Sbjct: 6 QQGTCRWFSKDKGYGFIV----SVDGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61
Query: 61 ANGKYSAENLKLVPK 75
A ++ +V +
Sbjct: 62 RG--AQAVDVVVVNE 74
>gi|148231227|ref|NP_001080330.1| B box-binding protein [Xenopus laevis]
gi|140247|sp|Q00436|YB3_XENLA RecName: Full=B box-binding protein; AltName: Full=Protein YB3
gi|65271|emb|CAA42778.1| YB3 [Xenopus laevis]
Length = 305
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 96 KG--AEAANVT 104
>gi|45383329|ref|NP_989745.1| nuclease-sensitive element-binding protein 1 [Gallus gallus]
gi|516701|dbj|BAA05380.1| unnamed protein product [Gallus gallus]
Length = 326
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|227539041|ref|ZP_03969090.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
gi|227241097|gb|EEI91112.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
Length = 63
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFITP+ D+F+H + + + + EG VTY+ +
Sbjct: 1 MNTGTVKFFNETKGFGFITPQD---GSGDIFVHTTGLKN----QVREGDEVTYEVERTPK 53
Query: 62 NGKYSAENLKL 72
+A N++L
Sbjct: 54 G--LNAINVRL 62
>gi|227501406|ref|ZP_03931455.1| cold shock protein [Corynebacterium accolens ATCC 49725]
gi|227077431|gb|EEI15394.1| cold shock protein [Corynebacterium accolens ATCC 49725]
Length = 126
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ S +DV++ R+ + G+ + GQ + +D+
Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRNVLPK-GVEEIFPGQRIEFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A ++++ K
Sbjct: 56 G--PQALRVRVLDK 67
>gi|270158155|ref|ZP_06186812.1| cold shock domain family protein [Legionella longbeachae D-4968]
gi|289163584|ref|YP_003453722.1| stress protein, member of the CspA-family [Legionella longbeachae
NSW150]
gi|269990180|gb|EEZ96434.1| cold shock domain family protein [Legionella longbeachae D-4968]
gi|288856757|emb|CBJ10568.1| stress protein, member of the CspA-family [Legionella longbeachae
NSW150]
Length = 69
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW+N KG+GF+ G D F+H SA++ G L EG V +
Sbjct: 6 RGTVKWFNESKGFGFL-----ESGGKDYFVHFSAISGTGFKTLAEGATVVFKPSNGQKG- 59
Query: 64 KYSAENLKLV 73
AE +++V
Sbjct: 60 -PQAEEVEVV 68
>gi|255038900|ref|YP_003089521.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
fermentans DSM 18053]
gi|254951656|gb|ACT96356.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
18053]
Length = 63
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++RG++K++N KG+GFI PE G DVF+H + + + E V YD +
Sbjct: 1 MNRGTVKFFNDTKGFGFIAPE---HGGADVFVHTTGLNDD----IRENDSVYYDVEEGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+ ++
Sbjct: 54 G--MNAVNVTII 63
>gi|30089118|emb|CAD27800.1| Y1 protein [Dugesia etrusca]
Length = 280
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N GYGFI + +D+F+H++A+ ++ +G+ V +D V+
Sbjct: 31 NGKVKWFNVKSGYGFINRND---NQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEG 87
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 88 EKG--LEAANVT 97
>gi|988281|gb|AAA75475.1| mYB-1a [Mus musculus]
Length = 322
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|85715709|ref|ZP_01046688.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85697362|gb|EAQ35241.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 62
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N K YGFI P+ G VF+H SAV AGL +L EG V+Y+ V N GK SA
Sbjct: 2 KWFNGQKSYGFIAPDN---GGKVVFVHISAVEKAGLGSLNEGDKVSYEVVVN--RGKESA 56
Query: 68 ENLKL 72
ENL++
Sbjct: 57 ENLRV 61
>gi|203398|gb|AAA40906.1| putative [Rattus norvegicus]
Length = 322
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|326802047|ref|YP_004319866.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
gi|326552811|gb|ADZ81196.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
Length = 63
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K++N KG+GFITP+ G ++F+H S + + E V+++ Q
Sbjct: 1 MQKGIVKFFNETKGFGFITPQD---GGREIFVHSSGLK----DRIRENDDVSFEVQQGQK 53
Query: 62 NGKYSAENLKLV 73
+A N+KL+
Sbjct: 54 G--PNAVNVKLI 63
>gi|325114942|emb|CBZ50498.1| cold-shock protein, DNA-binding, related [Neospora caninum
Liverpool]
Length = 125
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + Q +
Sbjct: 6 QRGHCKWFDSKKGFGFITAED----GTDLFVHQTEIKAQGFRNLAEGESVEFRV-QVGHD 60
Query: 63 GKYSAENLK 71
GK A +
Sbjct: 61 GKRKAVGVT 69
>gi|148673097|gb|EDL05044.1| lin-28 homolog B (C. elegans), isoform CRA_b [Mus musculus]
Length = 281
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 39 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 98
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 99 PKGL----ESIRVTGPGGS 113
>gi|92373398|ref|NP_113751.3| nuclease-sensitive element-binding protein 1 [Rattus norvegicus]
gi|113205059|ref|NP_035862.2| nuclease-sensitive element-binding protein 1 [Mus musculus]
gi|148230224|ref|NP_001091240.1| Y box binding protein 1 [Xenopus laevis]
gi|51704186|sp|P62961|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|51704189|sp|P62960|YBOX1_MOUSE RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=CCAAT-binding transcription factor I
subunit A; Short=CBF-A; AltName: Full=DNA-binding
protein B; Short=DBPB; AltName: Full=Enhancer factor I
subunit A; Short=EFI-A; AltName: Full=Y-box
transcription factor; AltName: Full=Y-box-binding
protein 1; Short=YB-1
gi|202435|gb|AAA40577.1| Y-box binding protein 1/DNA binding protein B [Mus musculus]
gi|220895|dbj|BAA02569.1| DNA binding protein B [Rattus sp.]
gi|15488612|gb|AAH13450.1| Y box protein 1 [Mus musculus]
gi|15488999|gb|AAH13620.1| Y box protein 1 [Mus musculus]
gi|20987294|gb|AAH29747.1| Y box protein 1 [Mus musculus]
gi|21594391|gb|AAH31472.1| Y box protein 1 [Mus musculus]
gi|38197295|gb|AAH61634.1| Y box protein 1 [Mus musculus]
gi|47938951|gb|AAH72486.1| Y box binding protein 1 [Rattus norvegicus]
gi|68533639|gb|AAH98672.1| Y box binding protein 1 [Rattus norvegicus]
gi|74178193|dbj|BAE29883.1| unnamed protein product [Mus musculus]
gi|76779878|gb|AAI06144.1| Y box protein 1 [Mus musculus]
gi|120577450|gb|AAI30161.1| LOC100037035 protein [Xenopus laevis]
gi|123227480|emb|CAM27834.1| Y box protein 1 [Mus musculus]
gi|123228022|emb|CAM22937.1| Y box protein 1 [Mus musculus]
gi|149035444|gb|EDL90125.1| rCG50488, isoform CRA_b [Rattus norvegicus]
Length = 322
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|199821|gb|AAA63390.1| Y box transcription factor [Mus musculus]
Length = 322
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|297467632|ref|XP_612469.5| PREDICTED: lin-28 homolog B [Bos taurus]
Length = 254
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus musculus]
Length = 322
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|203999|gb|AAA41108.1| enhancer factor-1-alpha [Rattus norvegicus]
Length = 322
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|167045315|gb|ABZ09973.1| putative cold-shock DNA-binding domain protein [uncultured marine
crenarchaeote HF4000_APKG9P22]
Length = 64
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI EG D+F+H++ + + +G V ++ + +
Sbjct: 1 METGTVKWFNQSKGFGFIEREG---EAKDLFVHQTELEGE----IHDGDKVEFELGETEK 53
Query: 62 NGKYSAENLKLVP 74
+A +K V
Sbjct: 54 G--PNAVKVKRVE 64
>gi|74007477|ref|XP_549034.2| PREDICTED: similar to cold shock domain protein A [Canis
familiaris]
Length = 315
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RGS+KW+N GYGFI+ + +DVF+H++A+ ++ +G+ V +D VQ
Sbjct: 26 RGSVKWFNVKNGYGFISRHDTQ---EDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 82
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 83 ERG--TEAANVT 92
>gi|149478389|ref|XP_001515006.1| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP
deaminase isoform M) [Ornithorhynchus anatinus]
Length = 316
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 53 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 109
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 110 KG--AEAANVT 118
>gi|332838569|ref|XP_003313542.1| PREDICTED: DNA-binding protein A isoform 1 [Pan troglodytes]
Length = 305
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 95 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 152 KG--AEAANVT 160
>gi|297478551|ref|XP_002707884.1| PREDICTED: lin-28 homolog B (C. elegans)-like [Bos taurus]
Length = 254
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|224586884|ref|NP_001138898.1| DNA-binding protein A isoform b [Homo sapiens]
gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens]
gi|119616609|gb|EAW96203.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
gi|119616610|gb|EAW96204.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
Length = 303
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 93 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 150 KG--AEAANVT 158
>gi|26344984|dbj|BAC36141.1| unnamed protein product [Mus musculus]
Length = 361
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +D F+H++ + L ++ +G+ V +D + +
Sbjct: 85 GTVKWFNVRNGYGFINRNDTK---EDAFVHQTVIKKNNPRKYLRSVGDGETVEFDVGEGE 141
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 142 KG--AEAANVT 150
>gi|332293275|ref|YP_004431884.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332171361|gb|AEE20616.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 63
Score = 69.3 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFIT EG D F+H S + + + EG V ++ + +
Sbjct: 1 MNNGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----IDEIREGDQVEFELKEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVI 63
>gi|238753510|ref|ZP_04614873.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473]
gi|238708463|gb|EEQ00818.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473]
Length = 69
Score = 69.3 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 1 MVHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M+ + G +KW+N KGYGFI+P G DV++ ++A+A+ +L+EGQ V + ++
Sbjct: 1 MMLKMGRVKWFNQLKGYGFISPLD---GGLDVYVSKTAIANTKNKSLSEGQNVEFSTYKS 57
Query: 60 DANGKYSAENL 70
SA ++
Sbjct: 58 IHG--PSAADV 66
>gi|187779634|ref|ZP_02996107.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC
15579]
gi|187773259|gb|EDU37061.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC
15579]
Length = 69
Score = 69.3 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
+H G +KW++ ++GYGFI S +G DV++H V +L EG+ V +D ++ +
Sbjct: 3 MHTGIVKWFDNERGYGFI----SGNNGKDVYVHSMQVKEKTHNKDLHEGEEVLFDIIERE 58
Query: 61 ANGKYSAENLKLV 73
A N++ +
Sbjct: 59 KG--PVAINVQKL 69
>gi|300676881|gb|ADK26753.1| lin-28 homolog B [Zonotrichia albicollis]
Length = 245
Score = 69.3 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ ES DVF+H+S + G +L EG+ V + + ++
Sbjct: 26 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 85
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 86 SKGL----ESIRVTGPGGS 100
>gi|126310761|ref|XP_001378246.1| PREDICTED: similar to lin-28 homolog B (C. elegans), [Monodelphis
domestica]
Length = 266
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 47 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 106
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ N
Sbjct: 107 SKGL----ESIRVTGPGGN 121
>gi|55451|emb|CAA40847.1| Y box-binbing protein [Mus musculus]
Length = 321
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 58 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 115 KG--AEAANVT 123
>gi|62859889|ref|NP_001016677.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
gi|89267862|emb|CAJ82694.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|89268717|emb|CAJ83277.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|213624244|gb|AAI70833.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
gi|213625546|gb|AAI70835.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 306
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 96 KG--AEAANVT 104
>gi|296484122|gb|DAA26237.1| lin-28 homolog B-like [Bos taurus]
Length = 255
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|237785049|ref|YP_002905754.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
gi|237757961|gb|ACR17211.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
Length = 130
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++PDKG+GF+T DDVF+ + V G+ L +GQ + Y++
Sbjct: 1 MPIGRVKWFDPDKGFGFVT----NPGDDDVFVG-TQVLPDGVEELHQGQKIEYEFAAGRK 55
Query: 62 NGK 64
+
Sbjct: 56 GPQ 58
>gi|2745892|gb|AAB94768.1| Y box transcription factor [Mus musculus]
Length = 299
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 36 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 92
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 93 KG--AEAANVT 101
>gi|300676769|gb|ADK26645.1| lin-28 homolog B [Zonotrichia albicollis]
Length = 245
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ ES DVF+H+S + G +L EG+ V + + ++
Sbjct: 26 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 85
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 86 SKGL----ESIRVTGPGGS 100
>gi|295398664|ref|ZP_06808688.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
gi|294973099|gb|EFG48902.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
Length = 70
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G +K +N +G+GFI E G D+F+H SA+ +LT GQ V ++ +
Sbjct: 1 MTYYGIVKTFNEKEGFGFIELPDFPEEG-DIFVHFSALLHLEQSSLTVGQKVHFEIAEGK 59
Query: 61 ANGKYSAENLKL 72
A N+ L
Sbjct: 60 RG--PQAVNISL 69
>gi|311740925|ref|ZP_07714752.1| cold-shock domain family protein [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304445|gb|EFQ80521.1| cold-shock domain family protein [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 126
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ S +DV++ R+ + G+ L GQ + +D+
Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRNVLPK-GVEELFPGQRIDFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++ K
Sbjct: 56 G--PQALRVKVLDK 67
>gi|121934029|gb|AAI27713.1| LIN28B protein [Homo sapiens]
gi|121934102|gb|AAI27714.1| LIN28B protein [Homo sapiens]
gi|146424334|gb|AAI41961.1| LIN28B protein [Homo sapiens]
gi|152061020|gb|AAI50539.1| LIN28B protein [Homo sapiens]
gi|152061071|gb|AAI50538.1| LIN28B protein [Homo sapiens]
Length = 227
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 67
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 68 SKGL----ESIRVTGPGGS 82
>gi|78042603|ref|NP_001026942.1| protein lin-28 homolog B [Mus musculus]
gi|71724928|gb|AAZ38894.1| LIN28B [Mus musculus]
gi|111598825|gb|AAH89037.1| Lin-28 homolog B (C. elegans) [Mus musculus]
Length = 271
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 89 PKGL----ESIRVTGPGGS 103
>gi|54298263|ref|YP_124632.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris]
gi|53752048|emb|CAH13474.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris]
Length = 69
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + +
Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSGGFKTLPDGATVLFKMGKGQKG- 59
Query: 64 KYSAENLKLVP 74
AE ++++
Sbjct: 60 -PQAEEVEVIK 69
>gi|297665296|ref|XP_002811006.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding
protein 1-like [Pongo abelii]
Length = 546
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + E +H++A+ L ++ +G+ V +D V+ +
Sbjct: 282 GTVKWFNVRNGYGFINRNDTKEDV--FVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEGE 339
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 340 KG--AEAANVT 348
>gi|290543326|ref|NP_001166512.1| Y box binding protein 1 [Cavia porcellus]
gi|194241598|gb|ACF35054.1| YB1 [Cavia porcellus]
Length = 324
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|110834773|ref|YP_693632.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
gi|110647884|emb|CAL17360.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
Length = 76
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG +KW+NP+KG+GFI + SG+++F+H AV + G +L G V +D +D
Sbjct: 11 QRGEVKWFNPNKGFGFILTD----SGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRG 66
Query: 63 GKYSAENL 70
A+N+
Sbjct: 67 --EQADNV 72
>gi|73973951|ref|XP_539064.2| PREDICTED: similar to RNA-binding protein LIN-28 [Canis familiaris]
Length = 251
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 30 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 89
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 90 SKGL----ESIRVTGPGGS 104
>gi|21673445|ref|NP_661510.1| cold shock-like protein CspG [Chlorobium tepidum TLS]
gi|21646547|gb|AAM71852.1| cold shock-like protein CspG [Chlorobium tepidum TLS]
Length = 97
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ + +KW++ KGYGFI G+D+F+H S++ S L + V YD +
Sbjct: 1 MAKSKVKWFDGKKGYGFILNPD---GGEDIFVHFSSIISDQSFKVLNQDADVEYDLDKTQ 57
Query: 61 ANGKYSAENLKLVPKSS 77
A+N++ + S+
Sbjct: 58 KG--LQAKNVRELSVSA 72
>gi|293345049|ref|XP_002725925.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 1 [Rattus
norvegicus]
gi|293356922|ref|XP_001069344.2| PREDICTED: lin-28 homolog B isoform 1 [Rattus norvegicus]
Length = 271
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ N
Sbjct: 89 PKGL----ESIRVTGPGGN 103
>gi|116248187|sp|Q45KJ6|LN28B_MOUSE RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
Length = 247
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 89 PKGL----ESIRVTGPGGS 103
>gi|38233375|ref|NP_939142.1| cold shock protein B [Corynebacterium diphtheriae NCTC 13129]
gi|38199635|emb|CAE49294.1| cold shock protein B [Corynebacterium diphtheriae]
Length = 129
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + WY+ DKG+GF+ S GDD F+ + + G+ L +GQ V +DYV
Sbjct: 1 MPQGKVLWYDVDKGFGFV----SNPEGDDCFVSKDVLPQ-GVQKLEKGQRVEFDYVARGR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRIKVLDT 67
>gi|332025391|gb|EGI65558.1| Y-box factor-like protein [Acromyrmex echinatior]
Length = 362
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+ + ++ +G++V +D V
Sbjct: 25 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIG 81
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 82 EKG--HEAANVT 91
>gi|254443950|ref|ZP_05057426.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae
bacterium DG1235]
gi|198258258|gb|EDY82566.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae
bacterium DG1235]
Length = 64
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G+IKW++ +KGYGFI +E GDD+F+H S + G L EG V ++ +
Sbjct: 1 MPKGTIKWFDQEKGYGFIQQ---SEGGDDLFVHHS--ETDGYA-LNEGDSVEFEIGEGRK 54
Query: 62 NGKYSAENLKLV 73
A ++ V
Sbjct: 55 G--PCATKVQKV 64
>gi|465508|sp|Q06066|YBOX1_CHICK RecName: Full=Nuclease-sensitive element-binding protein 1;
AltName: Full=Y-box transcription factor; AltName:
Full=Y-box-binding protein 1; Short=YB-1
gi|289797|gb|AAA02573.1| YB-1 protein [Gallus gallus]
Length = 321
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 58 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 115 KG--AEAANVT 123
>gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo sapiens]
Length = 134
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 26 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 83 KG--AEAANVT 91
>gi|163788488|ref|ZP_02182934.1| cold shock protein [Flavobacteriales bacterium ALC-1]
gi|159876808|gb|EDP70866.1| cold shock protein [Flavobacteriales bacterium ALC-1]
Length = 63
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFIT EGS + F+H S + + + EG V YD +
Sbjct: 1 MSTGTVKFFNDAKGFGFITEEGS---NTEHFVHISGL----VDEIREGDNVEYDLTEGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAINVKVI 63
>gi|312132318|ref|YP_003999657.1| cspc1 [Bifidobacterium longum subsp. longum BBMN68]
gi|311773581|gb|ADQ03069.1| CspC1 [Bifidobacterium longum subsp. longum BBMN68]
Length = 79
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
+ +G++K++ KG+GFI P+ G DVF+H + + G L EG V Y
Sbjct: 1 MAQGTVKFFLAKKGFGFIQPDD---GGGDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57
Query: 58 QNDANGKYSAENLKLVPKS 76
+ A+++ +
Sbjct: 58 SSGKG--TQAKDVVKLSSG 74
>gi|326677327|ref|XP_003200812.1| PREDICTED: protein lin-28 homolog B-like, partial [Danio rerio]
Length = 211
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDD----VFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GFI+ S D VF+H+S + G +L EG+ V + + ++
Sbjct: 114 GYCKWFNVRMGFGFISMTSSEGKPVDPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRSS 173
Query: 61 AN 62
Sbjct: 174 KG 175
>gi|14270385|emb|CAC39432.1| cold-shock domain protein [Takifugu rubripes]
Length = 263
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 24 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 81 KG--AEAANVT 89
>gi|305665006|ref|YP_003861293.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170]
gi|88707420|gb|EAQ99665.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170]
Length = 63
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFIT EG D F+H S + + + EG V +D + +
Sbjct: 1 MNKGTVKFFNNAKGFGFITEEGV---DKDHFVHVSGL----VDEIREGDEVEFDLQEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus laevis]
Length = 304
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 96 KG--AEAANVT 104
>gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus]
Length = 268
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 5 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 61
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 62 KG--AEAANVT 70
>gi|293345051|ref|XP_002725926.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 2 [Rattus
norvegicus]
gi|293356926|ref|XP_002729027.1| PREDICTED: lin-28 homolog B isoform 3 [Rattus norvegicus]
Length = 247
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ N
Sbjct: 89 PKGL----ESIRVTGPGGN 103
>gi|213510928|ref|NP_001133543.1| Y-box-binding protein 2-A [Salmo salar]
gi|209154422|gb|ACI33443.1| Y-box-binding protein 2-A [Salmo salar]
Length = 328
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D V+
Sbjct: 31 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEA 87
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 88 AKG--SEAANVT 97
>gi|50978844|ref|NP_001003127.1| Y-box protein ZONAB-A [Canis lupus familiaris]
gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ZONAB-A [Canis lupus familiaris]
Length = 304
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H +A+ L ++ +G+ V +D V+ +
Sbjct: 95 GTVKWFNVRNGYGFINRNDTK---EDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 152 KG--AEAANVT 160
>gi|327284528|ref|XP_003226989.1| PREDICTED: protein lin-28 homolog B-like [Anolis carolinensis]
Length = 320
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++
Sbjct: 101 TGHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 160
Query: 60 DAN 62
Sbjct: 161 SKG 163
>gi|144900094|emb|CAM76958.1| cold shock DNA-binding domain protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 209
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K+++ +KG+GF+ + + G DVF+H A+ +G+ L GQ V Q
Sbjct: 146 GVVKFFSAEKGFGFVQTD---QGGKDVFVHIKALERSGIKALETGQRVRCTTTQGQKG-- 200
Query: 65 YSAENLKLV 73
A+ + L+
Sbjct: 201 PQADTVALI 209
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
++KW+N KG+GF+ P D FLH SA+ AGL + EG + D Q +
Sbjct: 53 TATVKWFNASKGFGFVAPSD---GTPDAFLHISALERAGLTQVAEGTTLVVDLGQGNRGP 109
Query: 64 K 64
+
Sbjct: 110 Q 110
>gi|195589720|ref|XP_002084597.1| GD12750 [Drosophila simulans]
gi|194196606|gb|EDX10182.1| GD12750 [Drosophila simulans]
Length = 352
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 63 TGTVKWFNVKSGYGFINRNDTR---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 120 EKGNE--AANVT 129
>gi|163731974|ref|ZP_02139420.1| cold shock protein [Roseobacter litoralis Och 149]
gi|161394272|gb|EDQ18595.1| cold shock protein [Roseobacter litoralis Och 149]
Length = 178
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ + G D+ LH + + + G ++ +G V + + D
Sbjct: 13 GVVKWFDPVKGFGFVVAD---AGGPDILLHVNVLRNFGQSSVADGARVELEVQRTDRG-- 67
Query: 65 YSAENL-KLVPKSSN 78
A + L+P S+
Sbjct: 68 VQATQVLSLLPPDSD 82
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G DD+FLH + +GL +L G+ + ++ G
Sbjct: 107 RVKWFDKGKGFGFANVFGRR---DDIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHM 162
Query: 66 SAEN 69
+AE
Sbjct: 163 AAEV 166
>gi|148225376|ref|NP_001087255.1| nuclease-sensitive element-binding protein 1 [Ovis aries]
gi|140326474|gb|ABO86713.1| nuclease sensitive element binding protein 1 [Ovis aries]
Length = 288
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 25 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 81
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 82 KG--AEAANVT 90
>gi|304321239|ref|YP_003854882.1| cold shock protein [Parvularcula bermudensis HTCC2503]
gi|303300141|gb|ADM09740.1| cold shock protein [Parvularcula bermudensis HTCC2503]
Length = 173
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++ KGYGFIT G DV +H S + +G EG +VT + ++++
Sbjct: 15 RGFVKWFDQTKGYGFIT---DEAGGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESEKG- 70
Query: 64 KYSAENL 70
A +
Sbjct: 71 -LQATRI 76
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW++ KGYGF+T + +D+F+H V +AGL L GQ + Y +
Sbjct: 108 TVKWFSRAKGYGFLTATNA---NEDIFVHMEVVRAAGLSELQPGQRLRASYGRGTKGLLA 164
Query: 66 SAEN 69
+A
Sbjct: 165 AAIE 168
>gi|3850772|emb|CAA76694.1| cold shock protein A [Lactococcus lactis subsp. cremoris MG1363]
Length = 66
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N DKGYGFI E DVF + ++ G EGQ VT+D
Sbjct: 1 MINGTVKWFNMDKGYGFIITED----MQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMTAR 56
Query: 62 NGKYSAENLKLV 73
A N+ V
Sbjct: 57 GRY--ASNIDKV 66
>gi|167461595|ref|ZP_02326684.1| putative cold-shock DNA-binding domain protein [Paenibacillus
larvae subsp. larvae BRL-230010]
Length = 59
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
N +KG+GFI E G+DVF+H S++ G +L EGQ V ++ Q + AEN+
Sbjct: 1 NAEKGFGFIEIE----QGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQGNRG--PQAENV 54
Query: 71 KLV 73
V
Sbjct: 55 SKV 57
>gi|24663131|ref|NP_524033.2| ypsilon schachtel [Drosophila melanogaster]
gi|16769538|gb|AAL28988.1| LD37574p [Drosophila melanogaster]
gi|23096153|gb|AAF49961.3| ypsilon schachtel [Drosophila melanogaster]
Length = 352
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 63 TGTVKWFNVKSGYGFINRNDTR---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 120 EKGNE--AANVT 129
>gi|325287795|ref|YP_004263585.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324323249|gb|ADY30714.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
7489]
Length = 63
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG D F+H S + + + EG +V YD + +
Sbjct: 1 MSKGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----VDEIREGDVVEYDLQEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|225010634|ref|ZP_03701104.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-3C]
gi|225005187|gb|EEG43139.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-3C]
Length = 63
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFI+ EG+ G + F+H S + + + EG V ++ Q
Sbjct: 1 MNKGTVKFFNDTKGFGFISEEGA---GKEHFVHISGL----IDEIREGDEVEFELEQGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|110680380|ref|YP_683387.1| cold shock protein [Roseobacter denitrificans OCh 114]
gi|109456496|gb|ABG32701.1| cold shock protein [Roseobacter denitrificans OCh 114]
Length = 178
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ + G D+ LH + + + G ++ +G V + + +
Sbjct: 13 GVVKWFDPVKGFGFVVAD---AGGPDILLHVNVLRNFGQSSVADGARVELEVQRTERG-- 67
Query: 65 YSAENL-KLVPKSSN 78
A + L+P S+
Sbjct: 68 VQATQVLSLLPPESD 82
Score = 58.1 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G DD+FLH + +GL +L G+ + ++ G
Sbjct: 107 RVKWFDKGKGFGFANVFGRR---DDIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHM 162
Query: 66 SAEN 69
+AE
Sbjct: 163 AAEV 166
>gi|295110047|emb|CBL24000.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162]
Length = 75
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW++ KGYGFIT E G D F H S + G L+ GQ V ++ DANG+
Sbjct: 8 TVKWFSAQKGYGFITGED----GIDYFAHFSEIQMDGYRKLSGGQPVLFEAG-TDANGRS 62
Query: 66 SAENLKLVPKSSN 78
A+N+ ++
Sbjct: 63 LAKNISPADPNAE 75
>gi|255324986|ref|ZP_05366093.1| cold-shock DNA-binding domain protein [Corynebacterium
tuberculostearicum SK141]
gi|255297975|gb|EET77285.1| cold-shock DNA-binding domain protein [Corynebacterium
tuberculostearicum SK141]
Length = 126
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KWY+ +KG+GF+ S +DV++ R+ + G+ L GQ + +D+
Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNAGDEDVYVGRNVLPK-GVEELFPGQRIDFDFAAGRR 55
Query: 62 NGKYSAENLKLVPK 75
A +K++ K
Sbjct: 56 G--PQALRVKVLDK 67
>gi|88802865|ref|ZP_01118392.1| cold shock protein [Polaribacter irgensii 23-P]
gi|88781723|gb|EAR12901.1| cold shock protein [Polaribacter irgensii 23-P]
Length = 63
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG D F+H S + + + EG V +D + +
Sbjct: 1 MSKGTVKFFNESKGFGFITEEGV---DKDHFVHISGL----VDEIREGDQVEFDLQEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|330883205|gb|EGH17354.1| cold shock domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 59
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A+
Sbjct: 1 FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQKG--MQADE 54
Query: 70 LK 71
++
Sbjct: 55 VQ 56
>gi|220921873|ref|YP_002497174.1| cold-shock DNA-binding domain-containing protein
[Methylobacterium nodulans ORS 2060]
gi|219946479|gb|ACL56871.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
ORS 2060]
Length = 189
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ DV LH + + G + +EG V + VQ
Sbjct: 26 GRIKWFDVAKGFGFIVPDN---GAPDVLLHVTCLRRDGHQSASEGARVVVEAVQRARG-- 80
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 81 WQAFRVISLDQST 93
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N +G+GF++ D+F+H + G+ L G+ V Y
Sbjct: 116 ETAVVKWFNRLRGFGFLSRGD---GTPDIFVHMETLRRYGIAELKPGEKVMVRYGDGSKG 172
Query: 63 GKYSAENLKLVPKS 76
A ++L +
Sbjct: 173 --LMAAEVRLADGA 184
>gi|78186480|ref|YP_374523.1| cold-shock DNA-binding domain-containing protein [Chlorobium
luteolum DSM 273]
gi|78166382|gb|ABB23480.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM
273]
Length = 89
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ R +KW++ KGYGFI E G+D+F+H SA+ S L + V ++
Sbjct: 1 MARSKVKWFDGKKGYGFI---LHPEGGEDIFVHFSAIESDQPFKVLNQDADVDFEIDTTQ 57
Query: 61 ANGKYSAENLK 71
A+N++
Sbjct: 58 KG--LQAKNVR 66
>gi|195173115|ref|XP_002027340.1| GL15684 [Drosophila persimilis]
gi|198465413|ref|XP_002134972.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
gi|194113183|gb|EDW35226.1| GL15684 [Drosophila persimilis]
gi|198150149|gb|EDY73599.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
Length = 335
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 50 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 106
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 107 EKGNE--AANVT 116
>gi|197105102|ref|YP_002130479.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
gi|196478522|gb|ACG78050.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 202
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KGYGFI P+ ++ DV LH +++ S+G + EG L+T D V+
Sbjct: 28 TGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCDVVRRPK- 86
Query: 63 GKYSAENLKLVPKSS 77
G AE + L ++
Sbjct: 87 GWQVAEVVDLDESTA 101
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ +KW+N KGYGF+ + D+F+H + +G+ +L G+ V + +
Sbjct: 134 EQAKVKWFNRAKGYGFVIRDS---QPGDIFVHIETLRRSGMEDLQPGENVMVRFAEGPKG 190
>gi|300858014|ref|YP_003782997.1| cold shock-like protein B [Corynebacterium pseudotuberculosis
FRC41]
gi|300685468|gb|ADK28390.1| cold shock-like protein B [Corynebacterium pseudotuberculosis
FRC41]
gi|302205739|gb|ADL10081.1| cold shock protein B [Corynebacterium pseudotuberculosis C231]
gi|302330294|gb|ADL20488.1| cold shock protein B [Corynebacterium pseudotuberculosis 1002]
gi|308275975|gb|ADO25874.1| cold shock protein B [Corynebacterium pseudotuberculosis I19]
Length = 130
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++WY+P+KGYGF+ S +D ++ ++ + AG+ L +GQ + +D+
Sbjct: 1 MPIGRVRWYDPEKGYGFV----SNPGDEDCYVGKNVL-PAGVDKLEKGQRIEFDFAAVGK 55
Query: 62 NGKYSAENLKLVPK 75
K A +K++
Sbjct: 56 --KPQALRIKILET 67
>gi|195493731|ref|XP_002094541.1| GE20150 [Drosophila yakuba]
gi|194180642|gb|EDW94253.1| GE20150 [Drosophila yakuba]
Length = 353
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 64 TGTVKWFNVKSGYGFINRNDTR---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 120
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 121 EKGNE--AANVT 130
>gi|170585110|ref|XP_001897330.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
malayi]
gi|158595278|gb|EDP33845.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
malayi]
Length = 205
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLTEGQLVTYDY 56
G+ KW+N KGYGFITP+ E GDDVF+H +S + G +L G+ V +
Sbjct: 11 GTCKWFNVLKGYGFITPD---EGGDDVFVHQASGVFFIQSELNMDGFRSLDAGERVRFVI 67
Query: 57 VQNDANGKYSAEN 69
+ + +A
Sbjct: 68 RRRPEGNEATAVV 80
>gi|224048372|ref|XP_002196412.1| PREDICTED: lin-28 homolog B [Taeniopygia guttata]
Length = 258
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ ES DVF+H+S + G +L EG+ V + + ++
Sbjct: 39 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 98
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 99 SKGL----ESIRVTGPGGS 113
>gi|197632617|gb|ACH71032.1| Y-box binding protein-1 [Salmo salar]
gi|209732334|gb|ACI67036.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|221222302|gb|ACM09812.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|223646798|gb|ACN10157.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|223649012|gb|ACN11264.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|223672655|gb|ACN12509.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|303663491|gb|ADM16105.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
Length = 300
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|119568818|gb|EAW48433.1| lin-28 homolog B (C. elegans), isoform CRA_a [Homo sapiens]
Length = 257
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|327402092|ref|YP_004342930.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
gi|327317600|gb|AEA42092.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
Length = 64
Score = 68.5 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFI + S D F+H S + + + EG V ++ +
Sbjct: 1 MNKGTVKFFNETKGFGFIKEDDS---AKDHFVHVSGL----VDEIREGDQVEFELEEGKR 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--VNAVNVRVI 63
>gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens]
Length = 319
Score = 68.5 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H +A L ++ +G+ V +D V+ +
Sbjct: 57 GTVKWFNVRNGYGFIHRNDTK---EDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGE 113
Query: 61 ANGKYSAENLK 71
K A N+
Sbjct: 114 KGAK--AANVT 122
>gi|114608662|ref|XP_001143138.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
Length = 269
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 50 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 109
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 110 SKGL----ESIRVTGPGGS 124
>gi|85717340|ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
gi|85695815|gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
Length = 202
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + D VQ
Sbjct: 38 GVIKWFDASKGYGFIVPDN---GWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQRAKG-- 92
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 93 YQAFRITSMDEST 105
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T D+F+H + G+ L GQ V +
Sbjct: 132 VKWFNRLRGFGFLTRGD---GTPDIFVHMETLRRFGITELRPGQFVLVRFGPGSKG--MM 186
Query: 67 AENLKLVPKSSN 78
A ++ + +
Sbjct: 187 AAEVQPETGAPS 198
>gi|322832238|ref|YP_004212265.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
gi|321167439|gb|ADW73138.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
Length = 70
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 1 MVHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M+ + G +KWYN KGYGFI P ++++ R+++A+ G +L+ GQ V + ++
Sbjct: 1 MMLKMGLVKWYNQAKGYGFICPLD---GSSEIYVQRTSIANTGNKSLSAGQKVEFTTYRS 57
Query: 60 DANGKYSAENL 70
+G +A+ +
Sbjct: 58 VTHGPSAADVI 68
>gi|194131839|gb|ACF33225.1| Y-box protein Lyb2 [Lethenteron japonicum]
Length = 181
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 65 GTVKWFNVKNGYGFINRNDTK---EDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 121
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 122 KG--AEAANVT 130
>gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sapiens]
Length = 267
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|47214418|emb|CAG00259.1| unnamed protein product [Tetraodon nigroviridis]
Length = 179
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GFI+ + DVF+H+S + G +L EG+ + + + ++
Sbjct: 6 GVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSFKKSS 65
Query: 61 ANGKYSAENLK 71
A +
Sbjct: 66 KG--LEAVRVS 74
>gi|38142418|dbj|BAC99313.2| brain Y-box binding protein 1 [Rattus norvegicus]
Length = 322
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 59 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|296210997|ref|XP_002752196.1| PREDICTED: hypothetical protein LOC100396927 [Callithrix jacchus]
Length = 302
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 92 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 149 KG--AEAANVT 157
>gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapiens]
gi|47939143|gb|AAH72014.1| YBX1 protein [Homo sapiens]
Length = 266
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|296198877|ref|XP_002746914.1| PREDICTED: protein lin-28 homolog B-like isoform 2 [Callithrix
jacchus]
Length = 257
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|255530444|ref|YP_003090816.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
gi|255343428|gb|ACU02754.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
Length = 63
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI P ++F+H S + + ++ E V+YD Q
Sbjct: 1 MQQGTVKFFNETKGFGFIVPAN---GDSEIFVHSSGL----IDSIRENDSVSYDVEQGKK 53
Query: 62 NGKYSAENLKL 72
+A N+K+
Sbjct: 54 G--LNAINVKI 62
>gi|1353778|gb|AAB01787.1| Y-Box binding protein [Columba livia]
Length = 287
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 24 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 81 KG--AEAANVT 89
>gi|297678780|ref|XP_002817240.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B-like
[Pongo abelii]
Length = 269
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 50 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 109
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 110 SKGL----ESIRVTGPGGS 124
>gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norvegicus]
Length = 322
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI S ++ +DVF+H++A+ L ++ +G+ V ++ V+ +
Sbjct: 59 GTVKWFNVRNGYGFI---NSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGE 115
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 116 KG--AEAANVT 124
>gi|297291425|ref|XP_002803893.1| PREDICTED: protein lin-28 homolog B isoform 2 [Macaca mulatta]
Length = 255
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DAN 62
Sbjct: 98 SKG 100
>gi|126662941|ref|ZP_01733939.1| cold shock protein [Flavobacteria bacterium BAL38]
gi|126624599|gb|EAZ95289.1| cold shock protein [Flavobacteria bacterium BAL38]
Length = 66
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KGYGFIT + E+G D+F+H S + + +L EG V+Y+ +
Sbjct: 1 MRTGKVKFFNESKGYGFITDD---ETGKDIFVHASGMR---VESLNEGDAVSYE-EEEGR 53
Query: 62 NGKYSAENLKL 72
GK +A+ + +
Sbjct: 54 KGKVAAQVVVI 64
>gi|124008225|ref|ZP_01692922.1| conserved domain protein [Microscilla marina ATCC 23134]
gi|123986324|gb|EAY26146.1| conserved domain protein [Microscilla marina ATCC 23134]
Length = 64
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFIT +GS + F H S + + EG V ++ +
Sbjct: 1 MNTGTVKFFNESKGFGFITEDGS---NKEYFTHVSGLVDD----IREGDEVEFELQEGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+K +
Sbjct: 54 G--LNAVNVKRI 63
>gi|170749143|ref|YP_001755403.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170655665|gb|ACB24720.1| cold-shock DNA-binding domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 201
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ D+ LH + + G +EG + + V+
Sbjct: 38 GRIKWFDVSKGFGFIVPDD---GAPDILLHVTCLRRDGYQAASEGARIVVEAVERPRG-- 92
Query: 65 YSAENLKLVPKSS 77
+ A + + +++
Sbjct: 93 WQAFRVISLDQAT 105
Score = 60.4 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N +G+GF+T D+F+H + G+ L G+ V Y
Sbjct: 128 ETAVVKWFNRLRGFGFLTRGD---GTPDIFVHMETLRRYGIAELKPGESVLVRYGDGSKG 184
Query: 63 GKYSAENLKLVPKS 76
A ++L+ +
Sbjct: 185 --VMAAEVRLIDGA 196
>gi|167045316|gb|ABZ09974.1| putative cold-shock DNA-binding domain protein [uncultured marine
crenarchaeote HF4000_APKG9P22]
Length = 64
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI EG D+F+H++ V + +G V ++ + +
Sbjct: 1 METGTVKWFNQTKGFGFIEREG---EAKDLFVHKTEVEG----TIRDGDKVEFELGETEK 53
Query: 62 NGKYSAENLKLVP 74
+A +K V
Sbjct: 54 G--PNAVKVKRVE 64
>gi|330982957|gb|EGH81060.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 50
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQ 49
>gi|2502064|gb|AAB80761.1| Y-box binding protein A [Columba livia]
Length = 278
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 70 GTVKWFNVRNGYGFINRNDTK---EDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGE 126
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 127 KG--AEAANV 134
>gi|319955388|ref|YP_004166655.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
gi|319424048|gb|ADV51157.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
Length = 63
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG D F+H S + + + EG +V +D + +
Sbjct: 1 MSKGTVKFFNDAKGFGFITEEGVE---KDHFVHISGL----IDEVREGDVVEFDLQEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|301763343|ref|XP_002917091.1| PREDICTED: protein lin-28 homolog B-like [Ailuropoda melanoleuca]
Length = 257
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|114608664|ref|XP_001143220.1| PREDICTED: protein lin-28 homolog B isoform 2 [Pan troglodytes]
Length = 250
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 91 SKGL----ESIRVTGPGGS 105
>gi|221234388|ref|YP_002516824.1| cold shock protein CspD [Caulobacter crescentus NA1000]
gi|220963560|gb|ACL94916.1| cold shock protein cspD [Caulobacter crescentus NA1000]
Length = 196
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+
Sbjct: 20 GKVKWFDAGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAIIVCDVVRRPKGW 79
Query: 64 KYSAENLKLVPKSS 77
+ S E + L +
Sbjct: 80 QVS-EVVNLDESGA 92
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N KGYGF+ + D+F+H + GL +L G V + +
Sbjct: 132 KVKWFNRTKGYGFVIRD---AEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKG 185
>gi|260062739|ref|YP_003195819.1| Cold shock protein [Robiginitalea biformata HTCC2501]
gi|88784307|gb|EAR15477.1| Cold shock protein [Robiginitalea biformata HTCC2501]
Length = 63
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KGYGFIT G DVF+H S + + E V ++ Q
Sbjct: 1 MQKGTVKFFNESKGYGFIT----GVEGKDVFVHASGLEEE----IRENDEVYFEVEQGQK 52
Query: 62 NGKYSAENLKL 72
SA N+++
Sbjct: 53 G--PSAVNVRI 61
>gi|51972214|ref|NP_001004317.1| protein lin-28 homolog B [Homo sapiens]
gi|74758701|sp|Q6ZN17|LN28B_HUMAN RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
gi|47077279|dbj|BAD18558.1| unnamed protein product [Homo sapiens]
gi|71724934|gb|AAZ38897.1| LIN28B [Homo sapiens]
gi|119568819|gb|EAW48434.1| lin-28 homolog B (C. elegans), isoform CRA_b [Homo sapiens]
gi|123239097|emb|CAI21661.2| lin-28 homolog B (C. elegans) [Homo sapiens]
gi|123240273|emb|CAI20969.2| lin-28 homolog B (C. elegans) [Homo sapiens]
gi|187953595|gb|AAI37527.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
gi|223459806|gb|AAI37528.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
Length = 250
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 91 SKGL----ESIRVTGPGGS 105
>gi|62751871|ref|NP_001015855.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
gi|59861901|gb|AAH90361.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
Length = 248
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D V
Sbjct: 37 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAG 93
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 94 EKG--AEAANVT 103
>gi|240849145|ref|NP_001155549.1| Y-box protein Ct-p40-like [Acyrthosiphon pisum]
gi|239788387|dbj|BAH70879.1| ACYPI003867 [Acyrthosiphon pisum]
Length = 305
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N GYGFI + +D+F+H+SA+ + ++ +G+ V +D V+
Sbjct: 29 TGVVKWFNVKSGYGFINRNDTK---EDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEG 85
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 86 EKG--HEAANVT 95
>gi|149640530|ref|XP_001506004.1| PREDICTED: similar to LIN28B [Ornithorhynchus anatinus]
Length = 274
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ + + + ++
Sbjct: 51 TGHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEGFRSLKEGEPLEFTFKKS 110
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 111 SKGL----ESIRVTGPGGS 125
>gi|291224890|ref|XP_002732435.1| PREDICTED: cold shock domain protein A short-like [Saccoglossus
kowalevskii]
Length = 283
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 26 GTVKWFNVKNGYGFINRND---TNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82
Query: 61 ANGKYSAENLKLVPKSS 77
+ A N+ +
Sbjct: 83 KGNE--AANVTGPEGAP 97
>gi|242008099|ref|XP_002424850.1| Nuclease sensitive element-binding protein, putative [Pediculus
humanus corporis]
gi|212508400|gb|EEB12112.1| Nuclease sensitive element-binding protein, putative [Pediculus
humanus corporis]
Length = 288
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + + +DVF+H++A+ + ++ +G++V +D V
Sbjct: 26 TGTVKWFNVKSGYGFINRDDTK---EDVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVVVG 82
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 83 EKGNE--AANVT 92
>gi|332218575|ref|XP_003258430.1| PREDICTED: protein lin-28 homolog B-like [Nomascus leucogenys]
Length = 250
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 91 SKGL----ESIRVTGPGGS 105
>gi|256089138|ref|XP_002580673.1| Y box binding protein [Schistosoma mansoni]
gi|238666272|emb|CAZ36912.1| Y box binding protein, putative [Schistosoma mansoni]
Length = 231
Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|170783067|ref|YP_001711401.1| putative cold shock protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157637|emb|CAQ02835.1| putative cold shock protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 127
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+Y+ DKG+GFI+ + G +VFLH SA+ +G+ + G + +
Sbjct: 1 MPTGKVKFYDEDKGFGFISSDD----GQEVFLHASAL-PSGVAGVKAGTRLEFGIADGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + +++ +
Sbjct: 56 G--AQALSARILDAPPS 70
>gi|148273654|ref|YP_001223215.1| putative cold shock protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831584|emb|CAN02552.1| putative cold shock protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 127
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+Y+ DKG+GFI+ + G +VFLH SA+ +G+ + G + +
Sbjct: 1 MPTGKVKFYDEDKGFGFISSDD----GQEVFLHASAL-PSGVAGVKAGTRLEFGIADGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A + +++ +
Sbjct: 56 G--AQALSARILDAPPS 70
>gi|12082718|gb|AAG48580.1| cold shock-like protein CspE [Brucella abortus]
Length = 121
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83
>gi|299133814|ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
gi|298591650|gb|EFI51851.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
Length = 240
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH + + G EG + + VQ
Sbjct: 76 GVIKWFDASKGYGFIVPDN---GWPDILLHVTVLRRDGFQTAYEGARLVCECVQRQKG 130
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF++ E D+F+H + G+ L GQ V Y
Sbjct: 170 VKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQFVLVRYGPGSKG--MM 224
Query: 67 AENLKL 72
A ++
Sbjct: 225 AAEIQP 230
>gi|50955352|ref|YP_062640.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951834|gb|AAT89535.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 126
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+Y+ +KG+GFI+ + G +VFLH SA+ + + + G + +
Sbjct: 1 MPTGKVKFYDDEKGFGFISSDD----GQEVFLHASALLAGAV--VKAGSRLEFGIADGKR 54
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ +
Sbjct: 55 G--AQALSVRVLEAPPS 69
>gi|149372203|ref|ZP_01891473.1| cold shock protein [unidentified eubacterium SCB49]
gi|149354970|gb|EDM43532.1| cold shock protein [unidentified eubacterium SCB49]
Length = 63
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +K++N KG+GFIT EG D F+H S + + + EG V ++ + +
Sbjct: 1 MNKGIVKFFNDSKGFGFITEEGQE---KDHFVHISGL----IDEVREGDEVEFELKEGNK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVL 63
>gi|47123238|gb|AAH70000.1| Y box binding protein 1 [Danio rerio]
Length = 310
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V + V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|116617815|ref|YP_818186.1| cold-shock DNA-binding protein family protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|227432308|ref|ZP_03914301.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|116096662|gb|ABJ61813.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|227351914|gb|EEJ42147.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 74
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K + ++GYG+ITP+ E GDDVF+H + + G +L +G+ V Y VQ
Sbjct: 1 MKTGTVKIWQKERGYGYITPD---EGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQGYK 57
Query: 62 NGKYSAENLKLVPKSS 77
+ Y A ++ + +
Sbjct: 58 S--YQAAQVRPLSVEA 71
>gi|193212293|ref|YP_001998246.1| cold-shock DNA-binding domain-containing protein [Chlorobaculum
parvum NCIB 8327]
gi|193085770|gb|ACF11046.1| cold-shock DNA-binding domain protein [Chlorobaculum parvum NCIB
8327]
Length = 88
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ + +KW++ KGYGFI G+D+F+H SA+ S L + V Y+ +
Sbjct: 1 MAKSKVKWFDGKKGYGFILNPD---GGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQ 57
Query: 61 ANGKYSAENLKLVPK 75
A++++ +
Sbjct: 58 KG--LQAKSVRELSS 70
>gi|115524924|ref|YP_781835.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisA53]
gi|115518871|gb|ABJ06855.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisA53]
Length = 219
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + VQ
Sbjct: 55 GVIKWFDASKGYGFIVPDN---GWPDVLLHVTVLRRDGFQTAYEGARIICECVQRAKG-- 109
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 110 YQAFRVVSMDEST 122
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 149 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFGPGSKG--MM 203
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 204 AAEIQPENGAP 214
>gi|312377865|gb|EFR24595.1| hypothetical protein AND_10704 [Anopheles darlingi]
Length = 428
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N GYGFI + +DVF+H+SA+A + ++ +G+ V +D V
Sbjct: 92 TGVVKWFNVKSGYGFINRGDTH---EDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVVIG 148
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 149 EKGNE--AANVT 158
>gi|296198875|ref|XP_002746913.1| PREDICTED: protein lin-28 homolog B-like isoform 1 [Callithrix
jacchus]
Length = 250
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 91 SKGL----ESIRVTGPGGS 105
>gi|108803576|ref|YP_643513.1| cold-shock DNA-binding protein family protein [Rubrobacter
xylanophilus DSM 9941]
gi|108764819|gb|ABG03701.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
DSM 9941]
Length = 69
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG +KW++ +KG+GFI E SG++V +H + + G L EG V Y V+ +
Sbjct: 1 MGRGRVKWFSGEKGFGFIETE----SGEEVLVHYTEIKGEGFRALEEGAEVEYAAVKTE- 55
Query: 62 NGKYSAENLKLVPK 75
+G+ A ++++P+
Sbjct: 56 DGRRRAFGVRMLPR 69
>gi|226474422|emb|CAX71697.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|254495787|ref|ZP_05108699.1| cold shock-like protein [Legionella drancourtii LLAP12]
gi|254354944|gb|EET13567.1| cold shock-like protein [Legionella drancourtii LLAP12]
Length = 72
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K +N KGYGFITP+ +VF+H S VA AG L E Q ++Y + +
Sbjct: 6 GTVKRFNKIKGYGFITPDTGES---EVFVHFSEVAVAGYKELKENQRISYVLREGEKG-- 60
Query: 65 YSAENLKLVPK 75
A ++++
Sbjct: 61 LFATKVEIISP 71
>gi|225575513|ref|ZP_03784123.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM
10507]
gi|225037263|gb|EEG47509.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM
10507]
Length = 77
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW++P KGYGFI + G + F+H+S + G +L G+ V+Y +
Sbjct: 13 EHGTVKWFDPVKGYGFIAGDN----GKETFVHQSDILMRGFRHLETGERVSYRVKATEKG 68
Query: 63 GKYSAENL 70
K A ++
Sbjct: 69 DK--AIDV 74
>gi|146299007|ref|YP_001193598.1| cold-shock DNA-binding domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146153425|gb|ABQ04279.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae
UW101]
Length = 64
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KGYGFIT E+G D+F+H S + + L EG V+Y+ +
Sbjct: 1 MRTGTVKFFNESKGYGFIT---DEETGKDIFVHASGINAE---ELREGDRVSYE-EEEGR 53
Query: 62 NGKYSAEN 69
GK +A+
Sbjct: 54 KGKVAAKV 61
>gi|148555471|ref|YP_001263053.1| cold-shock DNA-binding protein family protein [Sphingomonas
wittichii RW1]
gi|148500661|gb|ABQ68915.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
RW1]
Length = 198
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++ +G+GFI +G DV +H S + G L EG + + V D
Sbjct: 36 GAVKWFDATRGFGFIATDGDRG---DVLVHFSVLRDHGRRTLPEGARIACEVVARDRG-- 90
Query: 65 YSAENL 70
A +
Sbjct: 91 LQARRI 96
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+KW+N KGYGF+ +G T D+F+H V AGL +L + +
Sbjct: 136 IVKWFNRLKGYGFLVRDGET---QDIFIHMETVRRAGLPDLLPETRMKARIAEGRKGP 190
>gi|109072184|ref|XP_001086990.1| PREDICTED: protein lin-28 homolog B isoform 1 [Macaca mulatta]
Length = 248
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90
Query: 60 DAN 62
Sbjct: 91 SKG 93
>gi|255037756|ref|YP_003088377.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
fermentans DSM 18053]
gi|254950512|gb|ACT95212.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
18053]
Length = 64
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KGYGFI + + D+F+H + + G + E V Y+ V+
Sbjct: 1 MPTGTVKFFNEAKGYGFIVEDDTK---KDIFVHVTGL---GGLTIRENDQVEYEVVEGKK 54
Query: 62 NGKYSAENLKLV 73
+A +K +
Sbjct: 55 G--LNAVQVKKI 64
>gi|328850349|gb|EGF99515.1| hypothetical protein MELLADRAFT_94308 [Melampsora larici-populina
98AG31]
Length = 432
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 5 GSIKWYNPDKGYGFITPEG-------STESGDDVFLHRSAVAS--AGLFNLTEGQLVTYD 55
G K++N KG+GFI + + G D+F+H S + AG +L +G+ V Y
Sbjct: 99 GFCKFFNAGKGFGFIQDDNPAELPTMDGDPGTDIFVHYSCITRCDAGFKSLLDGEKVEYV 158
Query: 56 YVQNDANGKYSAENLK 71
+++ +A ++
Sbjct: 159 LGRSNKG--LAALDIT 172
>gi|149898790|gb|ABR27857.1| predicted RNA-binding protein [Triatoma infestans]
Length = 300
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +G+DVF+H+SA+ + ++ +G+ V +D V
Sbjct: 56 TGTVKWFNVKSGYGFINRKD---TGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVVAG 112
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 113 EKGNE--AANVT 122
>gi|19552047|ref|NP_600049.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
gi|145294989|ref|YP_001137810.1| hypothetical protein cgR_0934 [Corynebacterium glutamicum R]
gi|21323586|dbj|BAB98213.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
gi|140844909|dbj|BAF53908.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 127
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWY+ ++G+GF+ S G+D F+ + + G+ L +GQ + +D+
Sbjct: 1 MPVGTVKWYDAERGFGFV----SNPGGEDCFVGKQVLPK-GVTELHKGQRIDFDFAAGRK 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRIKILET 67
>gi|108804086|ref|YP_644023.1| cold-shock DNA-binding protein family protein [Rubrobacter
xylanophilus DSM 9941]
gi|108765329|gb|ABG04211.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM
9941]
Length = 197
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G +KW++P+KGYGF+ G+D+F+H S V +L +G V Y+ +N+
Sbjct: 133 REQGRVKWFDPEKGYGFLVR----PGGEDLFVHHSEVEGDA-SSLGQGVEVEYEVGRNER 187
Query: 62 NGKYSAENLKLV 73
+A ++++
Sbjct: 188 G--PNARRVRVL 197
>gi|301513705|ref|ZP_07238942.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB058]
gi|301598130|ref|ZP_07243138.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB059]
Length = 61
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N KG+GFI + G DVF H S + + G L EGQ V + Q A N
Sbjct: 1 FNETKGFGFIQTD----EGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG--PQASN 54
Query: 70 LKLVPKS 76
+ +V +
Sbjct: 55 ITIVTNA 61
>gi|227499876|ref|ZP_03929969.1| cold shock protein CspC [Anaerococcus tetradius ATCC 35098]
gi|227217985|gb|EEI83258.1| cold shock protein CspC [Anaerococcus tetradius ATCC 35098]
Length = 68
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+++G +K ++ +G+GFI SGDD+F+H + + L GQ V ++ Q
Sbjct: 1 MNKGEVKLFDNKRGFGFI-----KWSGDDLFVHYTDIEADDDYKKLFAGQKVEFEIKQAP 55
Query: 61 ANGKYSAENLKLVPK 75
A +K++
Sbjct: 56 RG--PQAIRVKIIED 68
>gi|71679965|gb|AAI00455.1| Ybx2 protein [Mus musculus]
Length = 171
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 97 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 152
>gi|242008101|ref|XP_002424851.1| Y box binding protein, putative [Pediculus humanus corporis]
gi|212508401|gb|EEB12113.1| Y box binding protein, putative [Pediculus humanus corporis]
Length = 264
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+ + ++ +G++V +D V
Sbjct: 25 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVVVG 81
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 82 GKGNE--AANVT 91
>gi|157278086|ref|NP_001098143.1| Y-box binding protein [Oryzias latipes]
gi|27348122|dbj|BAC45236.1| Y-box binding protein [Oryzias latipes]
Length = 306
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 43 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 99
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 100 KG--AEAANVT 108
>gi|149521716|ref|XP_001517644.1| PREDICTED: similar to LD37574p, partial [Ornithorhynchus anatinus]
Length = 281
Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G +KW+N GYGFI +DVF+H+SA+ ++ EG++V +D V
Sbjct: 38 GVVKWFNVRHGYGFICRIDMQ---EDVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLVAGA 94
Query: 61 ANGKYSAENLKLVPKSS 77
A N+ + +
Sbjct: 95 KG--TEAANVTGLGGTP 109
>gi|309812365|ref|ZP_07706120.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185]
gi|308433670|gb|EFP57547.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185]
Length = 127
Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+Y+ +KG+GF++ + G DVF+ SA+ AG+ L G + Y V
Sbjct: 1 MPVGKVKFYSAEKGFGFVSGDD----GVDVFVPASAL-PAGVSQLRGGMRIEYSVVDGRK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ +
Sbjct: 56 G--AQAMHVQVLDAPPS 70
>gi|308510156|ref|XP_003117261.1| CRE-CEY-1 protein [Caenorhabditis remanei]
gi|308242175|gb|EFO86127.1| CRE-CEY-1 protein [Caenorhabditis remanei]
Length = 202
Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +D+F+H++A+ + L +L + + V +D V+
Sbjct: 22 KGTVKWFNVKNGYGFINRTD---TNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEG 78
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 79 SKG--LEASNVT 88
>gi|256089134|ref|XP_002580671.1| Y box binding protein [Schistosoma mansoni]
gi|238666270|emb|CAZ36910.1| Y box binding protein, putative [Schistosoma mansoni]
Length = 167
Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|145219984|ref|YP_001130693.1| cold-shock DNA-binding protein family protein [Prosthecochloris
vibrioformis DSM 265]
gi|145206148|gb|ABP37191.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides
DSM 265]
Length = 85
Score = 67.8 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ + +KW++ KGYGFI E G+D+F+H SA+ S L + V +++
Sbjct: 1 MAKSKVKWFDGKKGYGFI---LHPEGGEDIFVHFSAINSEQPFKVLNQDAEVEFEFDTTQ 57
Query: 61 ANGKYSAENLKLVPKSS 77
A+N+ + +SS
Sbjct: 58 KG--LQAKNVLELTESS 72
>gi|295705597|ref|YP_003598672.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294803256|gb|ADF40322.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 70
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H+G++K +N KG GFITP+ +VF H +A+ NL+EGQ V ++ +
Sbjct: 4 HKGTVKSFNESKGSGFITPKN---GSKEVFFHSNAIDREEYKNLSEGQKVEFEIHKGAKG 60
Query: 63 GKYSAENLKLVP 74
SA + V
Sbjct: 61 --PSAIKVHPVD 70
>gi|213512942|ref|NP_001133216.1| Y-box binding protein-2 [Salmo salar]
gi|197632619|gb|ACH71033.1| Y-box binding protein-2 [Salmo salar]
Length = 301
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 99 KG--AEAANVT 107
>gi|149279957|ref|ZP_01886083.1| cold shock protein [Pedobacter sp. BAL39]
gi|149229337|gb|EDM34730.1| cold shock protein [Pedobacter sp. BAL39]
Length = 63
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P ++F+H S + L ++ E VTYD Q
Sbjct: 1 MQEGTVKFFNETKGFGFIVPAN---GDSEIFVHSSGL----LDSIRENDSVTYDVEQGKK 53
Query: 62 NGKYSAENLKL 72
+A N+K+
Sbjct: 54 G--LNAINVKI 62
>gi|307209281|gb|EFN86372.1| Y-box factor-like protein [Harpegnathos saltator]
Length = 278
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+ + ++ +G++V +D V
Sbjct: 25 TGTVKWFNVKSGYGFINRNDTR---EDVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVVIG 81
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 82 EKG--HEAANVT 91
>gi|196007122|ref|XP_002113427.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
gi|190583831|gb|EDV23901.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
Length = 279
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G +KW+N +GYGFI + +G+DVF+H++A+ + L ++ + ++V +D +
Sbjct: 31 GKVKWFNVKRGYGFIHRDD---TGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVLSGP 87
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 88 KG--LEAANVT 96
>gi|58584964|ref|YP_198537.1| cold shock protein [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|58419280|gb|AAW71295.1| Cold shock protein [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 84
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 16/87 (18%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51
+ G+IKW+N +KGYGFI PE +G+D+F+H S + +G+ +L +G+
Sbjct: 1 MEFGNIKWFNAEKGYGFIKPE---ANGNDIFVHISTLERSGIRPDSLRGENKEKGIKGER 57
Query: 52 VTYDYVQNDAN---GKYSAENLKLVPK 75
V+Y+ + GK A NLKL+
Sbjct: 58 VSYELKEERGRNGEGKKFAINLKLLED 84
>gi|150017640|ref|YP_001309894.1| cold-shock DNA-binding domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149904105|gb|ABR34938.1| putative cold-shock DNA-binding domain protein [Clostridium
beijerinckii NCIMB 8052]
Length = 69
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62
G +KW++ ++GYGFI+ + GDDVF+H S + G +L E + VT+D +
Sbjct: 5 TGVVKWFDTERGYGFISCD----KGDDVFVHHSQIKDKGPDKDLHEDESVTFDIESGEKG 60
Query: 63 GKYSAENLKLV 73
A N++ +
Sbjct: 61 --PMATNVQKL 69
>gi|295689096|ref|YP_003592789.1| cold-shock DNA-binding domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295430999|gb|ADG10171.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
21756]
Length = 197
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+
Sbjct: 20 GRVKWFDAGKGYGFIIPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAVIVCDVVRRPKGW 79
Query: 64 KYSAENLKLVPKSS 77
+ S E + L S+
Sbjct: 80 QVS-EVVNLDESSA 92
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N KGYGF+ + D+F+H + GL +L G V + +
Sbjct: 130 ERAKVKWFNRTKGYGFVVRD---AEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKG 186
>gi|195020347|ref|XP_001985176.1| GH16919 [Drosophila grimshawi]
gi|193898658|gb|EDV97524.1| GH16919 [Drosophila grimshawi]
Length = 345
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G+LV +D V
Sbjct: 49 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 105
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 106 EKGNE--AANVT 115
>gi|150017771|ref|YP_001310025.1| cold-shock DNA-binding domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149904236|gb|ABR35069.1| putative cold-shock DNA-binding domain protein [Clostridium
beijerinckii NCIMB 8052]
Length = 63
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N +KG+GFI E DVF+H S+++ ++ EG V +D +
Sbjct: 1 MKTGTVKFFNSEKGFGFIEVE----GEKDVFVHSSSLSGF---SIQEGDKVQFDVEKGTK 53
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 54 G--PQATNIQRV 63
>gi|75675801|ref|YP_318222.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
gi|74420671|gb|ABA04870.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
Nb-255]
Length = 217
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + D VQ
Sbjct: 53 GVIKWFDASKGYGFIVPDN---GWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQRAKG-- 107
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 108 YQAFRITSMDEST 120
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 147 VKWFNRLRGFGFLTR---GEGTPDIFVHMETLRRFGITELRPGQFVLVRFGPGSKG--MM 201
Query: 67 AENLKLVPKSSN 78
A ++ + +
Sbjct: 202 AAEVQPETGAPS 213
>gi|209885160|ref|YP_002289017.1| cold-shock DNA-binding domain protein [Oligotropha
carboxidovorans OM5]
gi|209873356|gb|ACI93152.1| cold-shock DNA-binding domain protein [Oligotropha
carboxidovorans OM5]
Length = 191
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH + + G EG + + VQ
Sbjct: 27 GVIKWFDASKGYGFIVPDN---GLPDILLHVTVLRRDGYQTAYEGARLICECVQRQKG 81
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF++ E D+F+H + G+ L GQ V Y G +
Sbjct: 121 VKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRYGPGSK-GLMA 176
Query: 67 AE 68
AE
Sbjct: 177 AE 178
>gi|258593069|emb|CBE69380.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment']
Length = 67
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW+N K +GFI + G D F+H S V G E V +D Q+D G
Sbjct: 2 KGKVKWFNVTKRFGFIVRDD---GGQDAFVHASDV--EGGATPRENDDVEFDLGQDDR-G 55
Query: 64 KYSAENLKLV 73
+ A ++++
Sbjct: 56 RAKAVRVRIL 65
>gi|226474424|emb|CAX71698.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|47220428|emb|CAG03208.1| unnamed protein product [Tetraodon nigroviridis]
Length = 298
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|2493772|sp|P72191|TAPA_PSEFR RecName: Full=Temperature acclimation protein A; AltName:
Full=E7.0
gi|1513084|gb|AAC45999.1| temperature acclimation protein A [Pseudomonas fragi]
Length = 59
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A+
Sbjct: 1 FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG--MQADK 54
Query: 70 LK 71
++
Sbjct: 55 VQ 56
>gi|255036777|ref|YP_003087398.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
fermentans DSM 18053]
gi|254949533|gb|ACT94233.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
18053]
Length = 63
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +K++N KG+GFI+PE E GDD+F+H S + + + E V+Y+
Sbjct: 1 MNKGKVKFFNETKGFGFISPE---EGGDDIFVHVSGL----IDEIRENDSVSYEVENGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+ ++
Sbjct: 54 G--LNAVNVSVL 63
>gi|224134074|ref|XP_002327749.1| predicted protein [Populus trichocarpa]
gi|222836834|gb|EEE75227.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
G + ++ KG+GFI P+ D+F+H SA+ S G L E +V + + ND
Sbjct: 15 TGRVVRFSDKKGFGFIKPD---AGDKDLFVHHSAIKSDGGYRTLYEDDVVEFTILLND-- 69
Query: 63 GKYSAENLK 71
KY A ++
Sbjct: 70 DKYQAVDVT 78
>gi|2970679|gb|AAC06034.1| Y box protein [Drosophila silvestris]
Length = 342
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G+LV +D V
Sbjct: 49 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 105
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 106 EKGNE--AANVT 115
>gi|170738730|ref|YP_001767385.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
sp. 4-46]
gi|168193004|gb|ACA14951.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
Length = 204
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ DV LH + + G + +EG + + VQ
Sbjct: 41 GRIKWFDVAKGFGFIVPDS---GAPDVLLHVTCLRRDGHQSASEGARIVVEAVQRARG-- 95
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 96 WQAFRVVSLDQST 108
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N +G+GF++ E D+F+H + G+ L G+ V Y
Sbjct: 131 ETAVVKWFNRLRGFGFLSR---GEGTPDIFVHMETLRRYGIAELKPGERVMVRYGDGSKG 187
Query: 63 GKYSAENLKL 72
A ++L
Sbjct: 188 --LMAAEVRL 195
>gi|329764741|ref|ZP_08256336.1| cold-shock DNA-binding domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138791|gb|EGG43032.1| cold-shock DNA-binding domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 63
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI E SGDD+F+H+S V + EG V ++ Q
Sbjct: 1 MEQGTVKWFNRTKGFGFIERE----SGDDLFVHKSDVDGF----INEGDKVEFEVGQGQK 52
Query: 62 NGKYSAENLKL 72
+A+ +K
Sbjct: 53 G--PAAQKVKK 61
>gi|226474418|emb|CAX71695.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|87121680|ref|ZP_01077567.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121]
gi|86162931|gb|EAQ64209.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121]
Length = 79
Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++KW+N KG GFI + DVF+H ++ S G L +GQ V++ +ND
Sbjct: 6 KGTVKWFNDSKGVGFIQRDNE----ADVFVHYKSIVSEGHKTLKKGQAVSFFITENDFG- 60
Query: 64 KYSAENLKL 72
A + L
Sbjct: 61 -RQASEVAL 68
>gi|326932610|ref|XP_003212408.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
partial [Meleagris gallopavo]
Length = 134
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 6 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 62
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 63 KG--AEAANVT 71
>gi|219855908|ref|YP_002473030.1| hypothetical protein CKR_2565 [Clostridium kluyveri NBRC 12016]
gi|219569632|dbj|BAH07616.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 66
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
G++KW+N +KG+G IT E G D+F H S + S G L EGQ V++D
Sbjct: 18 TGTVKWFNGNKGFGSITGED----GKDIFAHFSQINSEGYKTLGEGQKVSFD 65
>gi|209965446|ref|YP_002298361.1| Cold shock-like protein CspG [Rhodospirillum centenum SW]
gi|209958912|gb|ACI99548.1| Cold shock-like protein CspG [Rhodospirillum centenum SW]
Length = 101
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K+++ DKG+GF+TP+G G DVF+H +A+ +G+ L Q V
Sbjct: 38 GTVKFFSSDKGFGFVTPDG---GGKDVFVHVTALERSGVRTLMPEQRVRIQTSMGQKG-- 92
Query: 65 YSAENLKLV 73
A ++++
Sbjct: 93 PQANRVEIL 101
>gi|313204176|ref|YP_004042833.1| cold-shock DNA-binding protein family [Paludibacter
propionicigenes WB4]
gi|312443492|gb|ADQ79848.1| cold-shock DNA-binding protein family [Paludibacter
propionicigenes WB4]
Length = 63
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI+ +GS + F+H S + + + EG V +D +
Sbjct: 1 MSKGTVKFFNESKGFGFISEDGSK---KEHFVHISGL----IDQIREGDTVEFDLQEGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|256061344|ref|ZP_05451488.1| cold-shock family protein [Brucella neotomae 5K33]
gi|261325345|ref|ZP_05964542.1| cold-shock DNA-binding domain-containing protein [Brucella
neotomae 5K33]
gi|261301325|gb|EEY04822.1| cold-shock DNA-binding domain-containing protein [Brucella
neotomae 5K33]
Length = 193
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG V + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARVVCEVRHGDRG 83
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|120437418|ref|YP_863104.1| cold shock-like protein [Gramella forsetii KT0803]
gi|117579568|emb|CAL68037.1| cold shock-like protein [Gramella forsetii KT0803]
Length = 64
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KGYGFIT + + D+F+H + + L EG V Y+ +
Sbjct: 2 QGTVKFFNESKGYGFITNDDTK---RDIFVHITGLNGE---TLQEGDRVEYEETEGKKG- 54
Query: 64 KYSAENLKLVP 74
+A ++++
Sbjct: 55 -VNATEVRVIE 64
>gi|259089373|ref|NP_001158512.1| Y-box binding protein [Oncorhynchus mykiss]
gi|219665297|gb|ACL31579.1| Y-box binding protein [Oncorhynchus mykiss]
Length = 301
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + DDVF+H++A+ L ++ +G++V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFINRNDTK---DDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 99 KG--AEAANVT 107
>gi|326798201|ref|YP_004316020.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
gi|326548965|gb|ADZ77350.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
Length = 63
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFI P G D+F+H S + + ++ E V+Y+ Q
Sbjct: 1 MQEGVVKFFNETKGFGFIVP---NAGGGDIFVHSSGL----IDSIRENDHVSYEVEQGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|254503970|ref|ZP_05116121.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
DFL-11]
gi|222440041|gb|EEE46720.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
DFL-11]
Length = 193
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+IKW++ KGYGFI P+ D+ LH + + G EG V + +
Sbjct: 28 GTIKWFDVGKGYGFIVPDSGET---DILLHVTCLRRDGFQTAYEGARVVCEVLDRPRG 82
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+N KG+GF+T E +D+F+H + G+ L GQ V +
Sbjct: 118 ETATVKWFNRVKGFGFLTQ---GEGTEDIFIHMETLRRYGITELRPGQEVLVRFGTGPK- 173
Query: 63 GKYSAENLKLVPKSS 77
G+ +AE ++ V +
Sbjct: 174 GRMAAE-IRPVGSGT 187
>gi|118588945|ref|ZP_01546352.1| putative cold shock transcription regulator protein [Stappia
aggregata IAM 12614]
gi|118438274|gb|EAV44908.1| putative cold shock transcription regulator protein [Stappia
aggregata IAM 12614]
Length = 193
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+IKW++ KGYGFI P+ D+ LH + + G EG V + +
Sbjct: 28 GTIKWFDVGKGYGFIVPDS---GDGDILLHVTCLRRDGYQTAYEGARVVCEVLDRPRG 82
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ ++KW+N KG+GF+T E +D+F+H + G+ L GQ V + +
Sbjct: 118 EKATVKWFNRVKGFGFLTQ---GEGSEDIFIHMETLRRFGITELRPGQDVLVRFGEGPK- 173
Query: 63 GKYSAE 68
G+ +AE
Sbjct: 174 GRMAAE 179
>gi|111182511|gb|ABH07676.1| cold-shock domain protein [Scophthalmus maximus]
Length = 297
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 98 KG--AEAANVT 106
>gi|163752832|ref|ZP_02159956.1| cold shock protein [Kordia algicida OT-1]
gi|161326564|gb|EDP97889.1| cold shock protein [Kordia algicida OT-1]
Length = 63
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++K++N KG+GFI EGS + F+H S + + + +G V ++ +
Sbjct: 1 MSRGTVKFFNDTKGFGFIVEEGS---NKEHFVHISGL----IDEVRQGDEVEFELTEGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|114706186|ref|ZP_01439089.1| cold shock protein [Fulvimarina pelagi HTCC2506]
gi|114539032|gb|EAU42153.1| cold shock protein [Fulvimarina pelagi HTCC2506]
Length = 191
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KG+GFI P+ + DV +H + + G EG V + +++
Sbjct: 29 GHIKWFDVAKGFGFIVPDDESA---DVLIHVTCLRRDGYATALEGARVVCEVQRSERG 83
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQNDA 61
++KW+N KGYGF+T + E+ +D+F+H + G+ L GQ V Y
Sbjct: 120 TATVKWFNRTKGYGFLT---TGENDEDIFIHMETLRRFGMTELRLGQEVKVRYGI---GR 173
Query: 62 NGKYSAEN 69
GK +AE
Sbjct: 174 KGKMAAEV 181
>gi|82242626|sp|Q8AVK2|LN28B_XENLA RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
gi|27503403|gb|AAH42225.1| LOC373796 protein [Xenopus laevis]
Length = 252
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEFTFKKSS 94
Query: 61 AN 62
Sbjct: 95 KG 96
>gi|134101948|ref|YP_001107609.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
2338]
gi|291007041|ref|ZP_06565014.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
2338]
gi|133914571|emb|CAM04684.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
2338]
Length = 150
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++ KGYGFI P+ G+DVFLH S + L G V ++ V +
Sbjct: 1 MKTGTVVRFDGIKGYGFIAPD---AGGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQ 57
Query: 62 NGKYSAENL 70
K NL
Sbjct: 58 GTKAMTVNL 66
>gi|226475488|emb|CAX77797.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 214
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|195379482|ref|XP_002048507.1| GJ14010 [Drosophila virilis]
gi|194155665|gb|EDW70849.1| GJ14010 [Drosophila virilis]
Length = 340
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G+LV +D V
Sbjct: 47 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 103
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 104 EKGNE--AANVT 113
>gi|281352788|gb|EFB28372.1| hypothetical protein PANDA_005261 [Ailuropoda melanoleuca]
Length = 276
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ S DVF+H+S + G +L EG+ V + + ++
Sbjct: 57 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 116
Query: 60 DAN 62
Sbjct: 117 SKG 119
>gi|15889107|ref|NP_354788.1| cold shock protein [Agrobacterium tumefaciens str. C58]
gi|15156913|gb|AAK87573.1| cold shock protein [Agrobacterium tumefaciens str. C58]
Length = 192
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH S + G + EG + + D
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GTQDVLLHVSCLRRDGYQTILEGTRIVALIQRRDRG 82
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N KG+GF+T E +D+F+H + GL L GQ+V Y D
Sbjct: 118 ERAIVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRYGDGDK- 173
Query: 63 GKYSAE 68
G +AE
Sbjct: 174 GLMAAE 179
>gi|110763831|ref|XP_393344.3| PREDICTED: hypothetical protein LOC409854 [Apis mellifera]
Length = 279
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+ + ++ +G++V +D V
Sbjct: 25 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIG 81
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 82 EKG--HEAANVT 91
>gi|332521006|ref|ZP_08397466.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
gi|332043536|gb|EGI79732.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
Length = 63
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG D F+H + + + + EG V +D +
Sbjct: 1 MSKGTVKFFNDTKGFGFITEEGV---DKDHFVHVTGI----IDEIREGDDVEFDLQEGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|226475490|emb|CAX77798.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|226475506|emb|CAX77806.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|226475502|emb|CAX77804.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|226474412|emb|CAX71692.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474414|emb|CAX71693.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474416|emb|CAX71694.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474420|emb|CAX71696.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226474426|emb|CAX71699.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475492|emb|CAX77799.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475494|emb|CAX77800.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475496|emb|CAX77801.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475500|emb|CAX77803.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475508|emb|CAX77807.1| putative cold shock domain protein A [Schistosoma japonicum]
gi|226475510|emb|CAX77808.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|158295359|ref|XP_001237771.2| AGAP006108-PA [Anopheles gambiae str. PEST]
gi|157015999|gb|EAU76557.2| AGAP006108-PA [Anopheles gambiae str. PEST]
Length = 402
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N GYGFI + +DVF+H+SA+A + ++ +G+ V +D V
Sbjct: 89 TGVVKWFNVKSGYGFINRGDTQ---EDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIG 145
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 146 EKGNE--AANVT 155
>gi|14150689|gb|AAK54601.1|AF373220_1 Y-box DNA-binding protein [Schistosoma japonicum]
gi|14039811|gb|AAK53394.1| Y-box binding protein [Schistosoma japonicum]
Length = 202
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|194216294|ref|XP_001503975.2| PREDICTED: similar to lin-28 homolog B (C. elegans) isoform 2
[Equus caballus]
Length = 257
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES----GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G KW+N G+GFI+ DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 TGHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97
Query: 60 DANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 98 SKGL----ESIRVTGPGGS 112
>gi|90424288|ref|YP_532658.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris BisB18]
gi|90106302|gb|ABD88339.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB18]
Length = 220
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + VQ
Sbjct: 56 GVIKWFDASKGYGFIVPDN---GSPDVLLHVTVLRRDGYQTAYEGARIICECVQRAKG-- 110
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 111 YQAFRVVSMDEST 123
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 150 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFGPGSKG--MM 204
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 205 AAEIQPEGGAP 215
>gi|296535726|ref|ZP_06897893.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC
49957]
gi|296263939|gb|EFH10397.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC
49957]
Length = 270
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++ +G+GF+TP+ G DVFLH S + AG ++ +G+ ++ + Q
Sbjct: 208 GTVKWFDQVRGFGFVTPDD---GGADVFLHSSVLQRAGKQDVQQGEKLSLEVRQGQRG-- 262
Query: 65 YSAENLK 71
A LK
Sbjct: 263 RQAVILK 269
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KWYN KG+GF+ G DVF H SA+ AG+ G + + + +
Sbjct: 18 VKWYNGRKGFGFV----LGPDGQDVFFHASALTEAGIEPPETGDKLVCEIGTDRQGRRL 72
>gi|23007963|ref|ZP_00049605.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 202
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ DV LH + + G +EG + + VQ
Sbjct: 39 GRIKWFDVSKGFGFILPDD---GSADVLLHITCLRRDGHQAASEGARIVVEAVQRARG-- 93
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 94 WQAHRVISLDQST 106
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N +G+GF++ D+F+H + G+ L G+ V Y
Sbjct: 132 VVKWFNRLRGFGFLSRGD---GTPDIFVHMETLRRYGIAELKPGEQVLVRYGDGSKG--A 186
Query: 66 SAENLKLVPKS 76
A ++LV +
Sbjct: 187 MAAEVRLVDGA 197
>gi|170017486|ref|YP_001728405.1| cold shock protein [Leuconostoc citreum KM20]
gi|169804343|gb|ACA82961.1| Cold shock protein [Leuconostoc citreum KM20]
Length = 74
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K + ++GYG+ITP+ G+DVF+H + + G L +G+ V+Y VQ
Sbjct: 1 MKTGIVKIWQKERGYGYITPD---AGGEDVFVHFNGIDMPGFKALKQGEKVSYVLVQGYK 57
Query: 62 NGKYSAENLKLVPKSSN 78
A ++ + K ++
Sbjct: 58 --APQAAQVQPIMKKAS 72
>gi|158318882|ref|YP_001511390.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|158114287|gb|ABW16484.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length = 72
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K+YN ++G+G I+ G D ++ S + G L G V +DY Q
Sbjct: 1 MTKGTVKFYNAERGWGAISSPDLPP-GFDAWVGFSMIEMDGYRFLEAGDRVEFDYEQVRQ 59
Query: 62 NG-KYSAENLKLV 73
+ +Y A ++ +
Sbjct: 60 DSFRYRATRVRKL 72
>gi|323136438|ref|ZP_08071520.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322398512|gb|EFY01032.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 224
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GF+ G DVF+H S + +G+ L EGQ VT V
Sbjct: 161 GKVKWFDETKGFGFVQSND---GGKDVFVHISILGPSGVSRLVEGQPVTMQVVDTAKG 215
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+ DKG+GF+ D FLH AV +AG L G + + +
Sbjct: 56 IVKWFKTDKGFGFVELAN---GTGDAFLHIGAVQAAGYDTLPPGAKLQVQVTSSVKGQQV 112
Query: 66 S 66
+
Sbjct: 113 A 113
>gi|260460198|ref|ZP_05808450.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
gi|259033843|gb|EEW35102.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 199
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KWY+P KG+GFI P + D F+H +A+ +G+ L EGQ+V + Q
Sbjct: 136 GTVKWYDPQKGFGFIAP---NKGEKDAFVHATALTRSGISELLEGQMVLVECGQGKKG 190
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+ W+N KG+GF+ G + +L + ++G ++ EG + + +
Sbjct: 47 VMWFNAGKGFGFVKLLD----GTEAYLPVRVLEASGTRDVCEGTRLKVTIEERPRGHQ-- 100
Query: 67 AENLKLVPKSSN 78
+ V + S+
Sbjct: 101 ---VTKVREISS 109
>gi|328543603|ref|YP_004303712.1| Cold shock-like protein cspG [polymorphum gilvum SL003B-26A1]
gi|326413347|gb|ADZ70410.1| Cold shock-like protein cspG [Polymorphum gilvum SL003B-26A1]
Length = 193
Score = 67.0 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+IKW++ KGYGFI P+ D+ LH + + G EG V + +
Sbjct: 28 GTIKWFDIAKGYGFIVPDN---GLPDILLHVTCLRRDGFQTAYEGARVVCEVLDKPRG 82
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ ++KW+N KG+GF+T E +D+F+H + G+ L GQ V +
Sbjct: 118 EKATVKWFNRVKGFGFLTQ---GEGTEDIFIHMETLRRFGITELRPGQDVLVRFGTGPK- 173
Query: 63 GKYSAE 68
G+ +AE
Sbjct: 174 GRMAAE 179
>gi|195128621|ref|XP_002008760.1| GI13673 [Drosophila mojavensis]
gi|193920369|gb|EDW19236.1| GI13673 [Drosophila mojavensis]
Length = 335
Score = 67.0 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+A + ++ +G+LV +D V
Sbjct: 47 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 103
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 104 EKGNE--AANVT 113
>gi|120435931|ref|YP_861617.1| cold shock-like protein [Gramella forsetii KT0803]
gi|120435932|ref|YP_861618.1| cold shock-like protein [Gramella forsetii KT0803]
gi|117578081|emb|CAL66550.1| cold shock-like protein [Gramella forsetii KT0803]
gi|117578082|emb|CAL66551.1| cold shock-like protein [Gramella forsetii KT0803]
Length = 64
Score = 67.0 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFI + S +D+F+H S + + + E V ++ Q
Sbjct: 1 MQEGKVKFFNNTKGFGFIKADDS---NEDIFVHSSGL----IDEIREDDRVQFEVEQGKK 53
Query: 62 NGKYSAENLKLVP 74
+A N++++
Sbjct: 54 G--LNAVNVEVID 64
>gi|254421024|ref|ZP_05034748.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3]
gi|196187201|gb|EDX82177.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3]
Length = 174
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++P KGYGFI P+ T + DV LH S++ G EG + D V+
Sbjct: 11 GRVKWFDPAKGYGFIVPDDPTLTELRDVLLHISSLRDTGRETADEGAPIVCDCVRRSKG- 69
Query: 64 KYSAENL 70
+ A +
Sbjct: 70 -WQAVEI 75
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N KGYGF+ + D+F+H + GL +L G V +
Sbjct: 111 VVKWFNRTKGYGFVVRD---REPGDIFVHIETLRRCGLDDLVPGDTVQVRFASGPKG 164
>gi|183598367|ref|ZP_02959860.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC
25827]
gi|188020543|gb|EDU58583.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC
25827]
Length = 71
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +KW++ +KGYGFI+P GDD+F+ R ++A+ + +L EGQ V + +N +
Sbjct: 6 HMGRVKWFDANKGYGFISPIN---GGDDIFVTRKSIANKKIKSLFEGQNVEFSVTRNS-D 61
Query: 63 GKYSAENL 70
G +A+ +
Sbjct: 62 GITAADVI 69
>gi|73950970|ref|XP_855993.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
(Y-box binding protein-1) (Y-box transcription factor)
(YB-1) (CCAAT-binding transcription factor I subunit A)
(CBF-A) (Enhancer factor I subunit A) (EFI-A)
(DNA-binding protein B) (DBPB)... isoform [Canis
familiaris]
Length = 305
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGF+ + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 63 GTVKWFNVRNGYGFLNRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 120 KG--AEAANVT 128
>gi|239832152|ref|ZP_04680481.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
gi|239824419|gb|EEQ95987.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
Length = 233
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ +D+ LH +++ G EG + + Q +
Sbjct: 68 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRQGERG 123
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G
Sbjct: 162 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGEGDK-GLM 217
Query: 66 SAE 68
+AE
Sbjct: 218 AAE 220
>gi|149278548|ref|ZP_01884684.1| cold shock protein [Pedobacter sp. BAL39]
gi|149230543|gb|EDM35926.1| cold shock protein [Pedobacter sp. BAL39]
Length = 63
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFI P ++F+H S + + N+ E V+YD Q
Sbjct: 1 MQQGTVKFFNETKGFGFIVPAN---GDSEIFVHSSGL----MDNIRENDSVSYDVEQGKK 53
Query: 62 NGKYSAENLKL 72
+A N+K+
Sbjct: 54 G--LNAINVKI 62
>gi|73950974|ref|XP_856066.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
(Y-box binding protein-1) (Y-box transcription factor)
(YB-1) (CCAAT-binding transcription factor I subunit A)
(CBF-A) (Enhancer factor I subunit A) (EFI-A)
(DNA-binding protein B) (DBPB)... isoform [Canis
familiaris]
Length = 314
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGF+ + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 63 GTVKWFNVRNGYGFLNRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 120 KG--AEAANVT 128
>gi|294884847|gb|ADF47434.1| cold shock domain-containing protein A [Dugesia japonica]
Length = 190
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60
G +KWYN KGYGFI + +DVF+H+SA++ +L E + V +D V+
Sbjct: 16 TGKVKWYNVKKGYGFIHRDDV---DEDVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGS 72
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 73 KGNE--AMNVT 81
>gi|41055233|ref|NP_957385.1| protein lin-28 homolog A [Danio rerio]
gi|82241857|sp|Q803L0|LN28A_DANRE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|27882510|gb|AAH44433.1| Lin-28 homolog (C. elegans) [Danio rerio]
gi|94732353|emb|CAK04625.1| novel protein (zgc:55584) [Danio rerio]
Length = 202
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ EG DVF+H+S + G +L EG+ V + + ++
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 95
Query: 61 AN 62
Sbjct: 96 KG 97
>gi|119357559|ref|YP_912203.1| cold-shock DNA-binding protein family protein [Chlorobium
phaeobacteroides DSM 266]
gi|119354908|gb|ABL65779.1| cold-shock DNA-binding protein family [Chlorobium
phaeobacteroides DSM 266]
Length = 85
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ R +KW++ KGYGFI + E G+D+F+H SA+ L + V ++ +
Sbjct: 1 MARSKVKWFDGKKGYGFIV---NPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQ 57
Query: 61 ANGKYSAENLKLVP 74
+ A+N++ VP
Sbjct: 58 KG--FQAKNVREVP 69
>gi|225013100|ref|ZP_03703514.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-2A]
gi|225002758|gb|EEG40740.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-2A]
Length = 63
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT + S G+DVF+H SA+ L EG V Y ++ G
Sbjct: 2 TGTVKFFNEAKGFGFITNDES---GEDVFVHISALNGV---TLREGAKVEY-VEEDGKKG 54
Query: 64 KYSAENLKLV 73
K A ++ ++
Sbjct: 55 K-QASSISVL 63
>gi|13488214|ref|NP_085668.1| cold-shock protein [Mesorhizobium loti MAFF303099]
gi|14027917|dbj|BAB54509.1| cold-shock protein [Mesorhizobium loti MAFF303099]
Length = 97
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KWY P+KG+GFI P+ DVF+H S + +GL L EGQ V Q
Sbjct: 33 GTVKWYKPEKGFGFIAPDNGE---KDVFVHASTLTRSGLSALVEGQKVFVACGQGKKG 87
>gi|218462851|ref|ZP_03502942.1| cold shock protein [Rhizobium etli Kim 5]
gi|327190806|gb|EGE57874.1| cold shock protein [Rhizobium etli CNPAF512]
Length = 192
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|209549149|ref|YP_002281066.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209534905|gb|ACI54840.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 192
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|86357508|ref|YP_469400.1| cold shock protein [Rhizobium etli CFN 42]
gi|86281610|gb|ABC90673.1| cold shock protein [Rhizobium etli CFN 42]
Length = 192
Score = 67.0 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALVQRRERG 82
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|284009214|emb|CBA76294.1| cold shock protein [Arsenophonus nasoniae]
Length = 72
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ ++G+GFITP +VF+H S + + L EGQ V+Y Q
Sbjct: 7 GLVKWFDGNRGFGFITPND---GSKEVFVHYSEIKNTHYQVLYEGQEVSYTPFQGMKGN- 62
Query: 65 YSAENLKLV 73
+A N+ ++
Sbjct: 63 -TATNVVVL 70
>gi|323359215|ref|YP_004225611.1| cold shock proteins [Microbacterium testaceum StLB037]
gi|323275586|dbj|BAJ75731.1| cold shock proteins [Microbacterium testaceum StLB037]
Length = 127
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +++Y+ +KG+GFI + G DVFLH +A+ AG G + +
Sbjct: 1 MPTGKVRFYDEEKGFGFIATDD----GQDVFLHATAL-PAGTPAPKAGTRLEFGVADGKR 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ +
Sbjct: 56 G--LQALSVRVLEAPVS 70
>gi|145594602|ref|YP_001158899.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
gi|145303939|gb|ABP54521.1| cold-shock DNA-binding protein family [Salinispora tropica
CNB-440]
Length = 137
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G+I ++ +GYGFI P G GDDVF+H + + G V+Y+ VQ++
Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSER 56
Query: 62 NGKYSAENLKLVPKSSN 78
K ++ L+ P + N
Sbjct: 57 GLKVASVVLETAPAAPN 73
>gi|190891571|ref|YP_001978113.1| cold shock protein [Rhizobium etli CIAT 652]
gi|190696850|gb|ACE90935.1| cold shock protein [Rhizobium etli CIAT 652]
Length = 192
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|77736623|ref|NP_001029990.1| protein lin-28 homolog B [Gallus gallus]
gi|116248186|sp|Q45KJ4|LN28B_CHICK RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
gi|71724932|gb|AAZ38896.1| LIN28B [Gallus gallus]
Length = 250
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GFI+ ES DVF+H+S + G +L EG+ V + Y ++
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTYKKSS 91
Query: 61 ANGKYSAENLKLVPKSSN 78
E++++ +
Sbjct: 92 KGL----ESIRVTGPGGS 105
>gi|295696822|ref|YP_003590060.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
gi|295412424|gb|ADG06916.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
Length = 769
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G IK +K YGFI P+ + +DV+ H S + EG V +D + +
Sbjct: 1 MAKGRIKKLFSEKQYGFIQPD---QGREDVYFHVSWIKGF---TPREGLRVEFDVERGEK 54
Query: 62 NGKYSAENLKLVPK 75
+ A N+++ K
Sbjct: 55 GPR--ARNVRIAEK 66
>gi|332703395|ref|ZP_08423483.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus
str. Walvis Bay]
gi|332553544|gb|EGJ50588.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus
str. Walvis Bay]
Length = 99
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG + W++ +GYGFI E +G+DVF+ + G L +G+ VT+ + G
Sbjct: 23 RGVVVWFHERRGYGFIRDE----TGEDVFVSWPDILRPGFKTLAQGEQVTFTLKPGE-GG 77
Query: 64 KYSAENLKLVPKS 76
+ +AE + L P +
Sbjct: 78 RKAAEVVPLQPSA 90
>gi|330718236|ref|ZP_08312836.1| cold-shock DNA-binding protein family protein [Leuconostoc fallax
KCTC 3537]
Length = 74
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K + D+GYG+ITP+ E GDD+F+H + + G +L +G+ VTY VQ
Sbjct: 1 MKIGKVKIWQQDRGYGYITPD---EGGDDIFVHFNGIDMPGFKSLHQGEAVTYVLVQGYK 57
Query: 62 NGKYSAENLKLVPK 75
A ++ V
Sbjct: 58 G--LQAAQVRPVDS 69
>gi|323493049|ref|ZP_08098183.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546]
gi|323312697|gb|EGA65827.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546]
Length = 50
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL 51
G++KW+N KG+GFI E G DVF H SA+ G L EGQ
Sbjct: 6 TGTVKWFNETKGFGFIQQEN----GPDVFAHFSAITGDGFRTLVEGQK 49
>gi|2073111|dbj|BAA19850.1| Y box protein 2 [Carassius auratus]
Length = 297
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G++V +D V+
Sbjct: 23 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAA 79
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 80 KG--SEAANVT 88
>gi|62389710|ref|YP_225112.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
gi|41325045|emb|CAF19526.1| Cold shock protein [Corynebacterium glutamicum ATCC 13032]
Length = 127
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KWY+ ++G+GF+ S G+D F+ + + G+ L +GQ + +D+
Sbjct: 1 MPVGTVKWYDAERGFGFV----SNPGGEDCFVGKQVLPK-GVTELHKGQRIDFDFAAAGK 55
Query: 62 NGKYSAENLKLVPK 75
A +K++
Sbjct: 56 G--PQALRIKILET 67
>gi|257066728|ref|YP_003152984.1| cold-shock DNA-binding domain-containing protein [Anaerococcus
prevotii DSM 20548]
gi|256798608|gb|ACV29263.1| cold-shock DNA-binding domain protein [Anaerococcus prevotii DSM
20548]
Length = 67
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
++RG +K ++ +G+GFI G+D+F+H S + S L GQ V ++ +
Sbjct: 1 MNRGKVKTFDNKRGFGFI-----EWEGEDLFVHYSDIESDTSFKKLYPGQAVEFEKIDAP 55
Query: 61 ANGKYSAENLKLVP 74
A ++++
Sbjct: 56 RG--AQAVKVRVID 67
>gi|148255425|ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
BTAi1]
gi|146407598|gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
Length = 217
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + VQ
Sbjct: 53 GVIKWFDASKGYGFIVPDN---GWPDVLLHVTVLRRDGYQTAYEGARLVVECVQRAKG-- 107
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 108 YQAFRIVSMDEST 120
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V Y G +
Sbjct: 147 VKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWVLVRYGPGSK-GMMA 202
Query: 67 AE 68
AE
Sbjct: 203 AE 204
>gi|256089136|ref|XP_002580672.1| Y box binding protein [Schistosoma mansoni]
gi|1477478|gb|AAC47760.1| Y-box binding protein [Schistosoma mansoni]
gi|1477484|gb|AAC47761.1| Y-box binding protein homolog [Schistosoma mansoni]
gi|238666271|emb|CAZ36911.1| Y box binding protein, putative [Schistosoma mansoni]
Length = 217
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|226475504|emb|CAX77805.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 203
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|313214830|emb|CBY41075.1| unnamed protein product [Oikopleura dioica]
gi|313231198|emb|CBY08313.1| unnamed protein product [Oikopleura dioica]
Length = 292
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
GS+KW+N GYGFI + + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 42 TGSVKWFNVRNGYGFIHRDD---TDEDVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVEG 98
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 99 QKGNE--AANVT 108
>gi|213983151|ref|NP_001135490.1| lin-28 homolog B [Xenopus (Silurana) tropicalis]
gi|195539937|gb|AAI67886.1| Unknown (protein for MGC:135309) [Xenopus (Silurana) tropicalis]
Length = 253
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSS 94
Query: 61 AN 62
Sbjct: 95 KG 96
>gi|161528035|ref|YP_001581861.1| cold-shock DNA-binding domain-containing protein [Nitrosopumilus
maritimus SCM1]
gi|160339336|gb|ABX12423.1| cold-shock DNA-binding domain protein [Nitrosopumilus maritimus
SCM1]
Length = 63
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++KW+N KG+GFI E GDD+F+H++ V + EG V ++ +
Sbjct: 1 MEQGTVKWFNRTKGFGFIERE----GGDDLFVHKTDVDGF----INEGDKVEFEVGEGRK 52
Query: 62 NGKYSAENLKLVP 74
+A+ +K
Sbjct: 53 G--PAAQKVKKTE 63
>gi|146340625|ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium
sp. ORS278]
gi|146193431|emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
sp. ORS278]
Length = 217
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + VQ
Sbjct: 53 GVIKWFDASKGYGFIVPDN---GWPDVLLHVTVLRRDGYQTAYEGARLVVECVQRAKG-- 107
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 108 YQAFRIVSMDEST 120
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V Y G +
Sbjct: 147 VKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWVLVRYGPGSK-GMMA 202
Query: 67 AE 68
AE
Sbjct: 203 AE 204
>gi|291516236|emb|CBK69852.1| Cold shock proteins [Bifidobacterium longum subsp. longum F8]
Length = 79
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
+ +G++K++ KG GFI P+ G+DVF+H + + G L EG V Y
Sbjct: 1 MAQGTVKFFLAKKGVGFIQPDD---GGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57
Query: 58 QNDANGKYSAENLKLVPKS 76
+ A+++ +
Sbjct: 58 SSGKG--TQAKDVVKLSSG 74
>gi|218680675|ref|ZP_03528572.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
Length = 192
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|241204473|ref|YP_002975569.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858363|gb|ACS56030.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 192
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|73950968|ref|XP_848371.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
(Y-box binding protein-1) (Y-box transcription factor)
(YB-1) (CCAAT-binding transcription factor I subunit A)
(CBF-A) (Enhancer factor I subunit A) (EFI-A)
(DNA-binding protein B) (DBPB)... isoform [Canis
familiaris]
gi|73950976|ref|XP_856109.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
(Y-box binding protein-1) (Y-box transcription factor)
(YB-1) (CCAAT-binding transcription factor I subunit A)
(CBF-A) (Enhancer factor I subunit A) (EFI-A)
(DNA-binding protein B) (DBPB)... isoform [Canis
familiaris]
Length = 326
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGF+ + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 63 GTVKWFNVRNGYGFLNRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 120 KG--AEAANVT 128
>gi|37525576|ref|NP_928920.1| hypothetical protein plu1632 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785004|emb|CAE13925.1| unnamed protein product [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 80
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KGYGFI+P+ G D+F++R A+A+ +LTEGQ V + +
Sbjct: 17 GRVKWFDERKGYGFISPQD---GGQDIFVNRKAIANTKNKSLTEGQDVEFSII--RKGYD 71
Query: 65 YSAENL 70
+A ++
Sbjct: 72 LTAADV 77
>gi|157118310|ref|XP_001653164.1| Y-box binding protein [Aedes aegypti]
gi|108883287|gb|EAT47512.1| Y-box binding protein [Aedes aegypti]
Length = 304
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N GYGFI + +DVF+H+SA+A + ++ +G++V +D V
Sbjct: 16 TGVVKWFNVKSGYGFINRGDTQ---EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 72
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 73 EKGNE--AANVT 82
>gi|51595763|ref|YP_069954.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
gi|108806689|ref|YP_650605.1| cold shock-like protein [Yersinia pestis Antiqua]
gi|108812740|ref|YP_648507.1| cold shock-like protein [Yersinia pestis Nepal516]
gi|145599569|ref|YP_001163645.1| cold shock-like protein [Yersinia pestis Pestoides F]
gi|153948246|ref|YP_001401539.1| cold shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis IP 31758]
gi|162421137|ref|YP_001606435.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
Angola]
gi|165924490|ref|ZP_02220322.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938972|ref|ZP_02227525.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009860|ref|ZP_02230758.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211781|ref|ZP_02237816.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399726|ref|ZP_02305244.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419851|ref|ZP_02311604.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424222|ref|ZP_02315975.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167469384|ref|ZP_02334088.1| cold shock protein [Yersinia pestis FV-1]
gi|170024887|ref|YP_001721392.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186894842|ref|YP_001871954.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|218928546|ref|YP_002346421.1| cold shock-like protein [Yersinia pestis CO92]
gi|229841368|ref|ZP_04461527.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229843473|ref|ZP_04463619.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229895846|ref|ZP_04511016.1| Cold shock-like protein [Yersinia pestis Pestoides A]
gi|229903148|ref|ZP_04518261.1| Cold shock-like protein [Yersinia pestis Nepal516]
gi|270486942|ref|ZP_06204016.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|51589045|emb|CAH20663.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
gi|108776388|gb|ABG18907.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108778602|gb|ABG12660.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|115347157|emb|CAL20050.1| cold shock-like protein [Yersinia pestis CO92]
gi|145211265|gb|ABP40672.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|152959741|gb|ABS47202.1| cold shock DNA-binding domain protein [Yersinia
pseudotuberculosis IP 31758]
gi|162353952|gb|ABX87900.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
gi|165913119|gb|EDR31743.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923550|gb|EDR40682.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991256|gb|EDR43557.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166207552|gb|EDR52032.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962592|gb|EDR58613.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050434|gb|EDR61842.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057071|gb|EDR66834.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751421|gb|ACA68939.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186697868|gb|ACC88497.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
gi|229678918|gb|EEO75021.1| Cold shock-like protein [Yersinia pestis Nepal516]
gi|229689820|gb|EEO81881.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229697734|gb|EEO87781.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700769|gb|EEO88798.1| Cold shock-like protein [Yersinia pestis Pestoides A]
gi|270335446|gb|EFA46223.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
gi|320015742|gb|ADV99313.1| Cold shock-like protein [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 69
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P G DV+++++A+A+ +L EGQ V + ++
Sbjct: 6 GRVKWFNQSEGYGFISPHD---GGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHG-- 60
Query: 65 YSAENL 70
SA ++
Sbjct: 61 PSAADV 66
>gi|159476838|ref|XP_001696518.1| nucleic acid binding protein [Chlamydomonas reinhardtii]
gi|30527347|gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomonas reinhardtii]
gi|158282743|gb|EDP08495.1| nucleic acid binding protein [Chlamydomonas reinhardtii]
Length = 247
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ +G++KW+N KG+GFITP G G+D+F+H++ + S G +L EG++ V+
Sbjct: 5 LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEV-VEFEVEAG 60
Query: 61 ANGKYSAENLK 71
+G+ A N+
Sbjct: 61 PDGRSKAVNVT 71
>gi|222148686|ref|YP_002549643.1| cold shock protein [Agrobacterium vitis S4]
gi|221735672|gb|ACM36635.1| cold shock protein [Agrobacterium vitis S4]
Length = 192
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KG+GFI P+ DV LH + + G + EG + + D
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIHKRDRG- 82
Query: 64 KYSAENL 70
Y A +
Sbjct: 83 -YQAFRV 88
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ V + D G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQTVLVRFGNGDK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|291394002|ref|XP_002713355.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
Length = 320
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ ++ +G+ V +D V+ +
Sbjct: 57 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGE 113
Query: 61 ANGKYSAENLK 71
+ + N+
Sbjct: 114 KGAEVA--NVT 122
>gi|332293443|ref|YP_004432052.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332171529|gb|AEE20784.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 64
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H+G++K++N KG+GFI E+ + F+H + + + + EG V ++ +
Sbjct: 1 MHKGTVKFFNDTKGFGFI---NEEEANQEHFVHVTGL----IDEVREGDAVEFELKEGKK 53
Query: 62 NGKYSAENLKLVP 74
+A N++++
Sbjct: 54 G--LNAVNVRVID 64
>gi|302383024|ref|YP_003818847.1| cold-shock DNA-binding domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302193652|gb|ADL01224.1| cold-shock DNA-binding domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 186
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 GSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++P KGYGFI P+ D+ LH S++ +G EG + D +
Sbjct: 17 GRVKWFDPGKGYGFIVPDDPGQTDHKDILLHISSLRDSGRDLAGEGATIECDCARRAKG 75
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+N KGYGF+ E D+F+H + GL +L G+ V +
Sbjct: 123 TVKWFNRTKGYGFVVRET---DPGDIFVHIETLRRCGLDDLVPGETVAVRFATGPKG 176
>gi|257387598|ref|YP_003177371.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
gi|257169905|gb|ACV47664.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
Length = 64
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI + ++ +DVF H + G +L EGQ V +D VQ D
Sbjct: 1 MATGTVDFFNDTGGYGFI---DTEDADEDVFFHMEDI---GGPDLEEGQEVEFDIVQADK 54
Query: 62 NGKYSAENLKLV 73
+ AENL +
Sbjct: 55 GPR--AENLTRL 64
>gi|325293188|ref|YP_004279052.1| cold shock protein [Agrobacterium sp. H13-3]
gi|325061041|gb|ADY64732.1| cold shock protein [Agrobacterium sp. H13-3]
Length = 192
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW++ KG+GFI P+ DV LH S + G + EG + + D
Sbjct: 27 TGAVKWFDVAKGFGFIVPDN---GMQDVLLHVSCLRRDGYQTILEGTRIVALIQRRDRG 82
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N KG+GF+T E +D+F+H + GL L GQ+V + D
Sbjct: 118 ERAIVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGDK- 173
Query: 63 GKYSAE 68
G +AE
Sbjct: 174 GLMAAE 179
>gi|226475498|emb|CAX77802.1| putative cold shock domain protein A [Schistosoma japonicum]
Length = 217
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|14548150|gb|AAK66807.1|U40238_30 RNA-binding cold-shock protein [uncultured crenarchaeote 4B7]
Length = 64
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI E D+F+H++ + + +G V ++ +++
Sbjct: 1 MEIGTVKWFNQTKGFGFIEREN---DDKDLFVHKTEIEG----QIRDGDKVEFEVGESEK 53
Query: 62 NGKYSAENLKLVP 74
+A +K V
Sbjct: 54 G--PNAVKVKKVD 64
>gi|167042126|gb|ABZ06860.1| putative cold-shock DNA-binding domain protein [uncultured marine
crenarchaeote HF4000_ANIW93E5]
Length = 69
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW+N KG+GFI EG D+F+H++ V +++G V ++ +
Sbjct: 6 MENGTVKWFNQTKGFGFIEREGDE---KDLFVHKTEVEG----TISDGDKVEFEVGSTEK 58
Query: 62 NGKYSAENLKLVP 74
+A +K V
Sbjct: 59 G--PNAVKVKRVE 69
>gi|298208216|ref|YP_003716395.1| cold-shock DNA-binding domain protein [Croceibacter atlanticus
HTCC2559]
gi|83848137|gb|EAP86007.1| cold-shock DNA-binding domain protein [Croceibacter atlanticus
HTCC2559]
Length = 64
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI EG + ++ F+H + + + + E V ++ Q +
Sbjct: 1 MQTGTVKFFNDTKGFGFIKEEG---TNEEHFVHVTGL----IDEIREDDRVEFELKQGNK 53
Query: 62 NGKYSAENLKLVP 74
+A N++++
Sbjct: 54 G--MNAVNVRVID 64
>gi|254498195|ref|ZP_05110944.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
gi|254352603|gb|EET11389.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
Length = 73
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +KW+ +KG+GFI E G D F+H S + + G L +G V++ +
Sbjct: 7 KQGIVKWFQKEKGFGFIQCE-----GQDYFVHFSGIIAEGYKTLPDGAHVSFKTMDGKKG 61
Query: 63 GKYSAENLKLVPKS 76
A ++++ ++
Sbjct: 62 K--QAHEVEVIHRA 73
>gi|57900030|dbj|BAD88072.1| cold shock domain protein 2-like protein [Oryza sativa Japonica
Group]
Length = 221
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K ++ G+ FITP+ +D+F+H+S++ G +L + ++ +D +G
Sbjct: 7 KGMVKGFDATNGFSFITPDD---GSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSD-DG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAVDVT 70
>gi|254494842|ref|ZP_01051872.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152]
gi|213690424|gb|EAQ41300.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152]
Length = 63
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFIT EG + + F+H S + + + E V +D
Sbjct: 1 MNKGTVKFFNESKGFGFITEEG---TNKEHFVHVSGL----VDEIRENDEVEFDLQDGRK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVL 63
>gi|110598385|ref|ZP_01386658.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
gi|110339994|gb|EAT58496.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
Length = 85
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ +KW++ KGYGFI G+D+F+H SA+ S L + V ++
Sbjct: 1 MAISKVKWFDGKKGYGFILNPD---GGEDIFVHFSAILSEQSFKVLNQDAEVDFELDTTQ 57
Query: 61 ANGKYSAENLKLVP 74
A+N++ +
Sbjct: 58 KG--LQAKNVRDIS 69
>gi|62290174|ref|YP_221967.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82700096|ref|YP_414670.1| cold shock DNA-binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|189024409|ref|YP_001935177.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|237815683|ref|ZP_04594680.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
gi|254689477|ref|ZP_05152731.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 6
str. 870]
gi|254697615|ref|ZP_05159443.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254730506|ref|ZP_05189084.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 4
str. 292]
gi|256257725|ref|ZP_05463261.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 9
str. C68]
gi|260546718|ref|ZP_05822457.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus NCTC 8038]
gi|260755001|ref|ZP_05867349.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|260758217|ref|ZP_05870565.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|260762044|ref|ZP_05874387.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|260884011|ref|ZP_05895625.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
gi|297248567|ref|ZP_06932285.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
bv. 5 str. B3196]
gi|62196306|gb|AAX74606.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616197|emb|CAJ11240.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
2308]
gi|189019981|gb|ACD72703.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
gi|237788981|gb|EEP63192.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
gi|260095768|gb|EEW79645.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus NCTC 8038]
gi|260668535|gb|EEX55475.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 4 str. 292]
gi|260672476|gb|EEX59297.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|260675109|gb|EEX61930.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 6 str. 870]
gi|260873539|gb|EEX80608.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 9 str. C68]
gi|297175736|gb|EFH35083.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
bv. 5 str. B3196]
Length = 193
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|13470456|ref|NP_102024.1| cold shock protein [Mesorhizobium loti MAFF303099]
gi|14021197|dbj|BAB47810.1| cold shock protein [Mesorhizobium loti MAFF303099]
Length = 181
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KGYGFI P+ D+ LH + + G EG V Q D
Sbjct: 17 GAIKWFDVAKGYGFILPDDGVSG--DILLHVTCLRRDGFQTALEGARVVCLVKQGDRG-- 72
Query: 65 YSAENL 70
A +
Sbjct: 73 LQAFRV 78
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G +
Sbjct: 112 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGDK-GLMA 167
Query: 67 AE 68
AE
Sbjct: 168 AE 169
>gi|224074255|ref|XP_002304323.1| predicted protein [Populus trichocarpa]
gi|222841755|gb|EEE79302.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
G + ++ KG+GFI P+ D+F+H SA+ S G L E +V + + +
Sbjct: 4 TGRVVRFSDKKGFGFIKPD---VGDKDLFVHHSAIKSDGGYRTLYEDDVVEFTILLTE-- 58
Query: 63 GKYSAENLK 71
KY A +
Sbjct: 59 DKYQAIEVT 67
>gi|254469479|ref|ZP_05082884.1| cold shock protein [Pseudovibrio sp. JE062]
gi|211961314|gb|EEA96509.1| cold shock protein [Pseudovibrio sp. JE062]
Length = 193
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + G+ L GQ V + + GK +
Sbjct: 122 VKWFNRVKGFGFLTR---GEGTEDIFIHMETLRRFGITELRPGQKVQVRFG-DGPKGKMA 177
Query: 67 AENLKLVPKSS 77
AE ++ V +
Sbjct: 178 AE-VRPVGNGT 187
Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KGYGF+ PE DV LH + + G EG V + +
Sbjct: 28 GTIKWFDIGKGYGFVEPEDDL---PDVLLHVTCLRRDGYQTAYEGARVVCEVLNRPRG-- 82
Query: 65 YSAENL 70
A +
Sbjct: 83 LQAMRI 88
>gi|114573575|ref|XP_001138838.1| PREDICTED: similar to transcription factor EF1(A) [Pan troglodytes]
Length = 324
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ + + V +D V+ +
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKKNPRKYLRSVGDRETVEFDVVEGE 117
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 118 KG--AEAANVT 126
>gi|120435933|ref|YP_861619.1| cold shock-like protein [Gramella forsetii KT0803]
gi|117578083|emb|CAL66552.1| cold shock-like protein [Gramella forsetii KT0803]
Length = 64
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFI EGS +D+F+H S + + ++ E V ++ Q
Sbjct: 1 MQEGKVKFFNNTKGFGFIQAEGS---NEDIFVHSSGL----IDDIREDDRVQFETEQGKK 53
Query: 62 NGKYSAENLKLVP 74
+A N++L+
Sbjct: 54 G--LNAINVELID 64
>gi|256089122|ref|XP_002580665.1| cold shock domain protein A [Schistosoma mansoni]
gi|238666264|emb|CAZ36904.1| cold shock domain protein A, putative [Schistosoma mansoni]
Length = 175
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RG +KW+N GYGFIT ++ D+F+H++A++ +L E + V + V+
Sbjct: 19 RGVVKWFNVKAGYGFITRSDTSS---DIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75
Query: 60 DANGKYSAENLK 71
D A ++
Sbjct: 76 DKG--VEASDVT 85
>gi|15965471|ref|NP_385824.1| putative cold shock transcription regulator protein
[Sinorhizobium meliloti 1021]
gi|307302592|ref|ZP_07582348.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
gi|307318438|ref|ZP_07597872.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|15074652|emb|CAC46297.1| Putative cold shock transcription regulator [Sinorhizobium
meliloti 1021]
gi|306895778|gb|EFN26530.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
AK83]
gi|306902956|gb|EFN33547.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
BL225C]
Length = 192
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KG+GFI P+ DV LH + + G + EG V + D
Sbjct: 27 TGVIKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTVLEGARVVALIQKRDRG 82
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|302876681|ref|YP_003845314.1| cold-shock DNA-binding domain-containing protein [Clostridium
cellulovorans 743B]
gi|307687356|ref|ZP_07629802.1| cold shock protein [Clostridium cellulovorans 743B]
gi|302579538|gb|ADL53550.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
743B]
Length = 69
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDA 61
+ G +KW++ ++GYGFI S G D ++H S V +L EG+ V YD V+ +
Sbjct: 4 YTGVVKWFDNERGYGFI----SGNEGMDAYVHHSQVKEKTHNKDLHEGESVKYDMVETNK 59
Query: 62 NGKYSAENLKLV 73
+ A N++ +
Sbjct: 60 --RPMAINVQKL 69
>gi|240139761|ref|YP_002964238.1| putative tandem cold-shock DNA-binding domain protein
[Methylobacterium extorquens AM1]
gi|240009735|gb|ACS40961.1| putative tandem cold-shock DNA-binding domain protein
[Methylobacterium extorquens AM1]
Length = 181
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++P KG+GFI P+ DV LH + + G +EG + + VQ
Sbjct: 18 GRIKWFDPSKGFGFIVPDD---GSADVLLHITCLRRDGHQAASEGARIVVEAVQRARG-- 72
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 73 WQAFRVLSLDQST 85
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +G+GF++ T D+F+H + G+ L G+ V Y
Sbjct: 108 ERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRYGDGSKG 164
Query: 63 GKYSAENLKLVPKS 76
A ++LV +
Sbjct: 165 --AMAAEVRLVDGA 176
>gi|297469975|ref|XP_602127.4| PREDICTED: cold shock domain protein A short-like [Bos taurus]
gi|297493214|ref|XP_002700207.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
gi|296470657|gb|DAA12772.1| cold shock domain protein A short-like [Bos taurus]
Length = 370
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLF-NLTEGQLVTYDYVQND 60
G++ W+ KGYGFI + +DVF+H +A+ ++ +G+ V +D VQ +
Sbjct: 70 GTVVWFKDKKGYGFIRRHDTQ---EDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGE 126
Query: 61 ANGKYSAENLK 71
A +
Sbjct: 127 RG--TEAAKVT 135
>gi|238784536|ref|ZP_04628544.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970]
gi|238714599|gb|EEQ06603.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970]
Length = 65
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P G DV++ ++A+A+ +L+EGQ V + ++
Sbjct: 2 GRVKWFNQSEGYGFISPHD---GGLDVYVSKTAIANTKNRSLSEGQDVEFSTYRSIHG-- 56
Query: 65 YSAENL 70
SA ++
Sbjct: 57 PSAADV 62
>gi|114765321|ref|ZP_01444438.1| cold shock DNA-binding domain protein [Pelagibaca bermudensis
HTCC2601]
gi|114542301|gb|EAU45330.1| cold shock DNA-binding domain protein [Roseovarius sp. HTCC2601]
Length = 180
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + + +
Sbjct: 17 GKVKWFDPVKGFGFVIAD---EGGPDILLHANVLRNFGQSSVADGARIEVSAQRTERG-- 71
Query: 65 YSAENLKLV--PKSSN 78
A ++ + P++ +
Sbjct: 72 IQATEVRRIEPPEAPS 87
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + DDVF+H + +GL +L G+ + + N G+
Sbjct: 111 RVKWFDKAKGFGFANVFGRS---DDVFIHIEVLRRSGLADLQPGEALAIRVI-NGKRGQM 166
Query: 66 SAEN 69
+ E
Sbjct: 167 ATEV 170
>gi|27379521|ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
gi|27352673|dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
Length = 224
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + +Q
Sbjct: 60 GVIKWFDASKGYGFIVPDN---GWPDVLLHVTVLRRDGFQTAYEGARIVVECIQRAKG-- 114
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 115 YQAFRVVSMDEST 127
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V + G +
Sbjct: 154 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFGPGSK-GMMA 209
Query: 67 AE 68
AE
Sbjct: 210 AE 211
>gi|254693964|ref|ZP_05155792.1| Cold shock-like protein cspG [Brucella abortus bv. 3 str. Tulya]
gi|261214256|ref|ZP_05928537.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
gi|260915863|gb|EEX82724.1| cold-shock DNA-binding domain-containing protein [Brucella
abortus bv. 3 str. Tulya]
Length = 193
Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|88803297|ref|ZP_01118823.1| cold shock protein [Polaribacter irgensii 23-P]
gi|88780863|gb|EAR12042.1| cold shock protein [Polaribacter irgensii 23-P]
Length = 63
Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFIT EG + ++ F+H S + + + E V +D
Sbjct: 1 MNKGTVKFFNESKGFGFITEEG---NNEEHFVHVSGL----VDEIRENDEVEFDLQDGRK 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVRVI 63
>gi|22126652|ref|NP_670075.1| cold shock-like protein [Yersinia pestis KIM 10]
gi|45441022|ref|NP_992561.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
91001]
gi|149366655|ref|ZP_01888689.1| cold shock-like protein [Yersinia pestis CA88-4125]
gi|21959665|gb|AAM86326.1|AE013880_6 cold shock protein [Yersinia pestis KIM 10]
gi|45435881|gb|AAS61438.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
gi|149291029|gb|EDM41104.1| cold shock-like protein [Yersinia pestis CA88-4125]
Length = 77
Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P G DV+++++A+A+ +L EGQ V + ++
Sbjct: 14 GRVKWFNQSEGYGFISPHD---GGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHG-- 68
Query: 65 YSAENL 70
SA ++
Sbjct: 69 PSAADV 74
>gi|312869520|ref|ZP_07729675.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
gi|311094967|gb|EFQ53256.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
Length = 67
Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ KG+GFIT ++F+H S + L V+ VQ
Sbjct: 1 MLEGKVKSFDEQKGWGFITV----PHEGEIFVHYSGIEGQHRRVLHPDDRVSLVIVQGKR 56
Query: 62 NGKYSAENLKLV 73
A +++++
Sbjct: 57 G--PQAAHVRIL 66
>gi|313205947|ref|YP_004045124.1| colD-shock DNA-binding protein family [Riemerella anatipestifer
DSM 15868]
gi|312445263|gb|ADQ81618.1| cold-shock DNA-binding protein family [Riemerella anatipestifer
DSM 15868]
gi|315022260|gb|EFT35288.1| Cold shock protein CspA [Riemerella anatipestifer RA-YM]
gi|325336613|gb|ADZ12887.1| Cold shock protein [Riemerella anatipestifer RA-GD]
Length = 63
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFITP G+DVF+H S + + E V Y+ Q
Sbjct: 1 MQEGTVKFFNETKGFGFITPSN---GGEDVFVHTSGLK----TKVHENDKVVYELQQGKK 53
Query: 62 NGKYSAENLKL 72
+A N+KL
Sbjct: 54 G--INAVNVKL 62
>gi|312113552|ref|YP_004011148.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311218681|gb|ADP70049.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 191
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+G D+ +H + + G EG + + ++ D
Sbjct: 28 GHIKWFDVSKGFGFIVPDG---GLPDILIHVTVLRRDGYQTAYEGARIVCEVLRRDRG-- 82
Query: 65 YSAENLKLVPKSS 77
A + + +S+
Sbjct: 83 LQAFRVIEMDEST 95
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T +D+F+H + G L GQ+V Y D
Sbjct: 121 VKWFNRLKGFGFLTR---GAGTEDIFVHMETLRRFGFAELRPGQIVQVRYGHGDKG--LM 175
Query: 67 AENLKL 72
A L+
Sbjct: 176 AAELRP 181
>gi|284035600|ref|YP_003385530.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
gi|283814893|gb|ADB36731.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
Length = 63
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P+ G+D+F+H S + + + E V ++ +
Sbjct: 1 MQTGTVKFFNETKGFGFIKPDD---GGEDIFVHASGL----IDQIRENDKVKFNVERGKK 53
Query: 62 NGKYSAENLK 71
+A N++
Sbjct: 54 G--LNAVNVE 61
>gi|163852424|ref|YP_001640467.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
gi|163664029|gb|ABY31396.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
Length = 202
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ DV LH + + G +EG + + VQ
Sbjct: 39 GRIKWFDVSKGFGFIVPDD---GSADVLLHITCLRRDGHQAASEGARIVVEAVQRARG-- 93
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 94 WQAFRVISLDQST 106
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +G+GF++ T D+F+H + G+ L G+ V Y
Sbjct: 129 ERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRYGDGSKG 185
Query: 63 GKYSAENLKLVPKS 76
A ++LV +
Sbjct: 186 --AMAAEVRLVDGA 197
>gi|308153249|ref|NP_001015806.2| protein lin-28 homolog A isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 188
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG----DDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF+T + DVF+H+S + G +L EG+ V + + ++
Sbjct: 29 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 88
Query: 61 AN 62
Sbjct: 89 KG 90
>gi|298291596|ref|YP_003693535.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
gi|296928107|gb|ADH88916.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
Length = 199
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KGYGF+ P+G G DV LH + + G EG + + V +
Sbjct: 36 GTIKWFDVSKGYGFVVPDG---GGSDVLLHVTCLRRGGFNTAQEGARIVCEAVARERG-- 90
Query: 65 YSAENL 70
+ A +
Sbjct: 91 FQALRV 96
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF++ E +D+F+H + GL L GQ+V +
Sbjct: 130 VKWFNRLRGFGFLSR---GEGTEDIFVHMETLRRHGLTELRPGQMVLVRFGPGPKG--LM 184
Query: 67 AENLKLVPKSSN 78
A ++ P ++
Sbjct: 185 AAEVR--PDGAS 194
>gi|188582438|ref|YP_001925883.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
gi|179345936|gb|ACB81348.1| cold-shock DNA-binding domain protein [Methylobacterium populi
BJ001]
Length = 181
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ DV LH + + G +EG + + + +
Sbjct: 18 GRIKWFDVSKGFGFIVPDD---GSADVLLHITCLRRDGHQAASEGARIVVEATRRERG-- 72
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 73 WQAFRVVSLDQST 85
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N +G+GF++ D+F+H + G+ L G+ V Y
Sbjct: 111 VVKWFNRLRGFGFLSRGD---GTPDIFVHMETLRRYGIAELKPGEQVLVRYGDGSKG--A 165
Query: 66 SAENLKLVPKS 76
A ++LV +
Sbjct: 166 MAAEVRLVDGA 176
>gi|167646972|ref|YP_001684635.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
K31]
gi|167349402|gb|ABZ72137.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
Length = 201
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+
Sbjct: 20 GRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETALEGAVIVCDVVKRPKGW 79
Query: 64 KYSAENLKLVPKSSN 78
+ S E + L +++
Sbjct: 80 QVS-EVVDLDESAAS 93
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N KGYGF+ +G D+F+H + GL +L G V + +
Sbjct: 134 ERAKVKWFNRTKGYGFVVRDG---QPGDIFVHIETLRRGGLEDLQPGDDVMVRFAEGPKG 190
>gi|150396662|ref|YP_001327129.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150028177|gb|ABR60294.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
medicae WSM419]
Length = 192
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KG+GFI P+ DV LH + + G + EG V + D
Sbjct: 27 TGVIKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTVLEGARVVALIQKRDRG 82
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|83313007|ref|YP_423271.1| cold shock protein [Magnetospirillum magneticum AMB-1]
gi|82947848|dbj|BAE52712.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
Length = 200
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K+++ +KG+GF+ + + G DVF+H A+ +G+ L GQ V
Sbjct: 137 GVVKFFSAEKGFGFVACD---QGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG-- 191
Query: 65 YSAENLKLV 73
A+ + ++
Sbjct: 192 PQADTVAII 200
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
++KW+N KG+GF+ P D FLH SA+ AGL + EG + D +
Sbjct: 52 TVKWFNASKGFGFVAPSD---GSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 107
>gi|117621225|ref|YP_857729.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562632|gb|ABK39580.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 214
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYV 57
M ++G I +N +G+GFI P+ G ++F+H SA+ S G +L G+ V+Y
Sbjct: 1 MRYQGRIVRWNEARGFGFIAPDQGDGEPKGAELFVHISALQSDG--SLPKIGERVSYQLG 58
Query: 58 QNDANGKYSAENL 70
+GK AE +
Sbjct: 59 SGQ-DGKPRAEQV 70
>gi|256850939|ref|ZP_05556328.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
27-2-CHN]
gi|260661153|ref|ZP_05862067.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
115-3-CHN]
gi|282934148|ref|ZP_06339426.1| DNA-binding cold-shock protein [Lactobacillus jensenii 208-1]
gi|297205819|ref|ZP_06923214.1| cold shock domain protein CspD [Lactobacillus jensenii JV-V16]
gi|256616001|gb|EEU21189.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
27-2-CHN]
gi|260548090|gb|EEX24066.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
115-3-CHN]
gi|281301762|gb|EFA94028.1| DNA-binding cold-shock protein [Lactobacillus jensenii 208-1]
gi|297148945|gb|EFH29243.1| cold shock domain protein CspD [Lactobacillus jensenii JV-V16]
Length = 73
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ G+GFI + F+ +A+ AG +L GQ V Y Q
Sbjct: 1 MRTGTVKQFDSAAGFGFI---DDDLTKASYFVFYTAIKEAGYKSLEIGQRVRYQLAQGKK 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|148559681|ref|YP_001259182.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225627734|ref|ZP_03785771.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
gi|254710329|ref|ZP_05172140.1| cold-shock family protein [Brucella pinnipedialis B2/94]
gi|254714325|ref|ZP_05176136.1| cold-shock family protein [Brucella ceti M644/93/1]
gi|254717224|ref|ZP_05179035.1| cold-shock family protein [Brucella ceti M13/05/1]
gi|254719316|ref|ZP_05181127.1| cold-shock family protein [Brucella sp. 83/13]
gi|256031823|ref|ZP_05445437.1| cold-shock family protein [Brucella pinnipedialis M292/94/1]
gi|256160002|ref|ZP_05457711.1| cold-shock family protein [Brucella ceti M490/95/1]
gi|256255223|ref|ZP_05460759.1| cold-shock family protein [Brucella ceti B1/94]
gi|256369687|ref|YP_003107197.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260168957|ref|ZP_05755768.1| cold-shock family protein [Brucella sp. F5/99]
gi|261219042|ref|ZP_05933323.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261222420|ref|ZP_05936701.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|261317893|ref|ZP_05957090.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261322102|ref|ZP_05961299.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261758450|ref|ZP_06002159.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|265984317|ref|ZP_06097052.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|265988922|ref|ZP_06101479.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|265998387|ref|ZP_06110944.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|294852602|ref|ZP_06793275.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|306839091|ref|ZP_07471908.1| cold-shock family protein [Brucella sp. NF 2653]
gi|306840269|ref|ZP_07473043.1| cold-shock family protein [Brucella sp. BO2]
gi|306844169|ref|ZP_07476762.1| cold-shock family protein [Brucella sp. BO1]
gi|148370938|gb|ABQ60917.1| cold-shock family protein [Brucella ovis ATCC 25840]
gi|225617739|gb|EEH14784.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
gi|255999849|gb|ACU48248.1| cold-shock family protein [Brucella microti CCM 4915]
gi|260921004|gb|EEX87657.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
B1/94]
gi|260924131|gb|EEX90699.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M13/05/1]
gi|261294792|gb|EEX98288.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M644/93/1]
gi|261297116|gb|EEY00613.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261738434|gb|EEY26430.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
F5/99]
gi|262552855|gb|EEZ08845.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
M490/95/1]
gi|264661119|gb|EEZ31380.1| cold-shock DNA-binding domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|264662909|gb|EEZ33170.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
83/13]
gi|294821191|gb|EFG38190.1| cold shock protein [Brucella sp. NVSL 07-0026]
gi|306275444|gb|EFM57181.1| cold-shock family protein [Brucella sp. BO1]
gi|306289796|gb|EFM60978.1| cold-shock family protein [Brucella sp. BO2]
gi|306405638|gb|EFM61900.1| cold-shock family protein [Brucella sp. NF 2653]
Length = 193
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|260460741|ref|ZP_05808991.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259033318|gb|EEW34579.1| cold-shock DNA-binding domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 198
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KGYGFI P+ D+ LH + + G EG V Q +
Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVCLVKQGERG-- 89
Query: 65 YSAENL 70
A +
Sbjct: 90 LQAFRV 95
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G +
Sbjct: 129 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGDK-GLMA 184
Query: 67 AE 68
AE
Sbjct: 185 AE 186
>gi|116251862|ref|YP_767700.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115256510|emb|CAK07594.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 192
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 27 TGVVKWFDVAKGFGFIVPDN---GLQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|254702002|ref|ZP_05163830.1| cold-shock family protein [Brucella suis bv. 5 str. 513]
gi|261752569|ref|ZP_05996278.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 5 str. 513]
gi|261742322|gb|EEY30248.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 5 str. 513]
Length = 193
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|188591387|ref|YP_001795986.1| conserved hypothetical protein, DUF1294; Cold shock protein
domain [Cupriavidus taiwanensis]
gi|170938782|emb|CAP63775.1| conserved hypothetical protein, DUF1294; Cold shock protein
domain [Cupriavidus taiwanensis LMG 19424]
Length = 190
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K ++ DKG+GFI + DVF H +A+ + + T G V+++ +
Sbjct: 1 MRKAGRVKTWHADKGFGFINV----HADTDVFFHITALQTRAV-TPTSGDRVSFELGKG- 54
Query: 61 ANGKYSAENLKLV 73
+G+ A N+ +V
Sbjct: 55 RDGRPQALNVAIV 67
>gi|62858881|ref|NP_001016266.1| protein lin-28 homolog A isoform 2 [Xenopus (Silurana)
tropicalis]
gi|82230981|sp|Q5EB47|LN28A_XENTR RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|59809410|gb|AAH90084.1| lin-28 homolog [Xenopus (Silurana) tropicalis]
gi|89266719|emb|CAJ82571.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
gi|195539672|gb|AAI68066.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
Length = 195
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG----DDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF+T + DVF+H+S + G +L EG+ V + + ++
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 95
Query: 61 AN 62
Sbjct: 96 KG 97
>gi|296445795|ref|ZP_06887747.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296256623|gb|EFH03698.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 221
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GF+ G DVF+H S + +G+ +L EGQ VT V
Sbjct: 158 GKVKWFDETKGFGFVQSND---GGKDVFVHISILGPSGVNHLAEGQPVTMQVVDTAKG 212
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+ P+KG+GF+ D FLH AV +AG L G + + +
Sbjct: 59 VVKWFKPEKGFGFVE---LGNGTGDAFLHIGAVQAAGYDALPPGAKLKVTVTSSVKGQQV 115
Query: 66 S 66
S
Sbjct: 116 S 116
>gi|227529020|ref|ZP_03959069.1| major cold shock protein [Lactobacillus vaginalis ATCC 49540]
gi|227351032|gb|EEJ41323.1| major cold shock protein [Lactobacillus vaginalis ATCC 49540]
Length = 71
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K ++ +KG+GFI ++F+H + + GL LT G+ V VQ
Sbjct: 1 MLQGTVKSFDREKGWGFIDV----PHEGEIFVHYTGIEGHGLRILTPGERVALVIVQGKR 56
Query: 62 NGKYSAENLKLVPK 75
A +++ + K
Sbjct: 57 G--PQAAHVQRLSK 68
>gi|156385226|ref|XP_001633532.1| predicted protein [Nematostella vectensis]
gi|156220603|gb|EDO41469.1| predicted protein [Nematostella vectensis]
Length = 98
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + + +D+F+H++A+A L ++ +G++V ++ V
Sbjct: 9 TGTVKWFNVKNGYGFINRDD---NKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSG 65
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 66 TKG--LEASNVT 75
>gi|47214045|emb|CAG00703.1| unnamed protein product [Tetraodon nigroviridis]
Length = 134
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +DVF+H++A+ L ++ +G+LV +D ++
Sbjct: 9 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIEA 65
Query: 60 DANGKYSAENLK 71
A N+
Sbjct: 66 AKG--SEAANVT 75
>gi|323452553|gb|EGB08427.1| hypothetical protein AURANDRAFT_16921 [Aureococcus
anophagefferens]
Length = 70
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N KGYGFITP+ G DVF+H++ + + G +L EG+ V ++ + D NG+ A +
Sbjct: 1 FNTVKGYGFITPDN---GGGDVFVHQTQIYARGFRSLAEGENVEFEI-EMDQNGRERAVS 56
Query: 70 LK 71
+
Sbjct: 57 VT 58
>gi|315499811|ref|YP_004088614.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
gi|315417823|gb|ADU14463.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
CB 48]
Length = 184
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI P+ +G DV LH SA+ G EG + +
Sbjct: 18 GRVKWFDAGKGYGFIVPQSPELTGMRDVLLHVSALRDMGRDLAHEGAAIECKIAKRAKG- 76
Query: 64 KYSAENLKLVPKSSN 78
+ + + +S +
Sbjct: 77 -WQVIQITALEESGS 90
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+IKW+N KGYGF+ D+F+H + GL ++ +G + + +
Sbjct: 119 TIKWFNRTKGYGFVVRGNDPT---DIFIHIETLRRFGLEDIQQGDTLMVRFGEGPKG 172
>gi|17987014|ref|NP_539648.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
gi|225852761|ref|YP_002732994.1| cold shock-like protein CspG [Brucella melitensis ATCC 23457]
gi|256044907|ref|ZP_05447811.1| Cold shock-like protein cspG [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113823|ref|ZP_05454616.1| Cold shock-like protein cspG [Brucella melitensis bv. 3 str.
Ether]
gi|256263754|ref|ZP_05466286.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|260565491|ref|ZP_05835975.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|265991335|ref|ZP_06103892.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265995172|ref|ZP_06107729.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|17982667|gb|AAL51912.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
gi|225641126|gb|ACO01040.1| Cold shock-like protein cspG [Brucella melitensis ATCC 23457]
gi|260151559|gb|EEW86653.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|262766285|gb|EEZ12074.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263002119|gb|EEZ14694.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093812|gb|EEZ17817.1| cold-shock DNA-binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|326409287|gb|ADZ66352.1| cold shock-like protein CspG [Brucella melitensis M28]
gi|326538998|gb|ADZ87213.1| cold shock-like protein cspG [Brucella melitensis M5-90]
Length = 193
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|332162199|ref|YP_004298776.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666429|gb|ADZ43073.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 69
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ G
Sbjct: 6 GRVKWFNQSEGYGFISPHDGSL---DVYVSKTAIANTKNKSLSEGQDVEFSTYRSIH-GP 61
Query: 65 YSAENL 70
+A+ +
Sbjct: 62 PAADVI 67
>gi|22901740|gb|AAN10049.1| Y-box protein Ct-p40 [Chironomus tentans]
Length = 264
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + D+F+H+SA+ + ++ +G++V +D V
Sbjct: 31 TGTVKWFNVKSGYGFINRND---NKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAG 87
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 88 EKG--SEAANVT 97
>gi|302386647|ref|YP_003822469.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
gi|302197275|gb|ADL04846.1| cold-shock DNA-binding domain protein [Clostridium
saccharolyticum WM1]
Length = 69
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KGYGF+ ST G DVF+H S V +L EG+ V +D +++
Sbjct: 4 YTGVVKWFDNEKGYGFL----STSEGQDVFVHHSQVKEKTHNKDLHEGESVNFDVRKDEK 59
Query: 62 NGKYSAENLKLV 73
A N++ +
Sbjct: 60 G--LCALNVQKI 69
>gi|257387599|ref|YP_003177372.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
gi|257169906|gb|ACV47665.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
Length = 64
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI + ++ DDVF H + G +L EGQ V +D VQ D
Sbjct: 1 MAQGTVDFFNDTGGYGFI---DTEDADDDVFFHMEDI---GGPDLEEGQEVEFDIVQADK 54
Query: 62 NGKYSAENLKLV 73
+ AENL +
Sbjct: 55 GPR--AENLTRL 64
>gi|300022575|ref|YP_003755186.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524396|gb|ADJ22865.1| cold-shock DNA-binding domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 199
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ D+ LH + + + G EG V + ++
Sbjct: 35 GMIKWFDASKGFGFIVPDN---GLPDILLHVTCLRAGGFQTAYEGARVHCEVLRRSKG-- 89
Query: 65 YSA 67
A
Sbjct: 90 MQA 92
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N +G+GF+T E D+F H + G L GQ+V +
Sbjct: 128 VKWFNRVRGFGFLTR---GEGTPDIFCHMETLRRFGFTELRPGQIVQVRWGYGSKG 180
>gi|148645030|gb|ABR01045.1| Csp [uncultured Geobacter sp.]
Length = 56
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N KG+GF+ E G+DVF H SA+A G +L EG VT++ + A N
Sbjct: 1 FNDGKGFGFLEQE----GGEDVFCHFSAIAGEGFKSLAEGDRVTFEVTKGPKG--LQAAN 54
Query: 70 L 70
+
Sbjct: 55 V 55
>gi|17533635|ref|NP_496366.1| Y-box family member (cey-1) [Caenorhabditis elegans]
gi|3876637|emb|CAB04257.1| C. elegans protein F33A8.3, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 208
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +D+F+H++A+ + L +L + + V +D V+
Sbjct: 22 KGTVKWFNVKNGYGFINRTD---TNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEG 78
Query: 60 DANGKYSAENLK 71
A ++
Sbjct: 79 SKG--LEAASVT 88
>gi|3831558|gb|AAC70000.1| major cold shock protein [Pediococcus pentosaceus]
Length = 50
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D A N
Sbjct: 1 KGFGFITRED----GSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESDRG--PQAAN 50
>gi|88855706|ref|ZP_01130369.1| cold shock protein [marine actinobacterium PHSC20C1]
gi|88815030|gb|EAR24889.1| cold shock protein [marine actinobacterium PHSC20C1]
Length = 127
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K+Y+ +KG+GFI + G +VFLH SA+ AG + G + +
Sbjct: 1 MPTGKVKFYDDEKGFGFIMSD----EGQEVFLHASAL-PAGTTGVKAGTRLEFGIADGKK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A +++++ ++
Sbjct: 56 G--AQALSVRVMDAPAS 70
>gi|218531182|ref|YP_002421998.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|254562173|ref|YP_003069268.1| tandem cold-shock DNA-binding domain-containing protein
[Methylobacterium extorquens DM4]
gi|218523485|gb|ACK84070.1| cold-shock DNA-binding domain protein [Methylobacterium
chloromethanicum CM4]
gi|254269451|emb|CAX25417.1| putative tandem cold-shock DNA-binding domain protein
[Methylobacterium extorquens DM4]
Length = 181
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI P+ DV LH + + G +EG + + VQ
Sbjct: 18 GRIKWFDVSKGFGFIVPDD---GSADVLLHITCLRRDGHQAASEGARIVVEAVQRARG-- 72
Query: 65 YSAENLKLVPKSS 77
+ A + + +S+
Sbjct: 73 WQAFRVLSLDQST 85
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +G+GF++ T D+F+H + G+ L G+ V Y
Sbjct: 108 ERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRYGDGSKG 164
Query: 63 GKYSAENLKLVPKS 76
A ++LV +
Sbjct: 165 --AMAAEVRLVDGA 176
>gi|149278086|ref|ZP_01884225.1| cold shock protein [Pedobacter sp. BAL39]
gi|149231284|gb|EDM36664.1| cold shock protein [Pedobacter sp. BAL39]
Length = 63
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFI P ++F+H + + + + E VTYD +
Sbjct: 1 MQEGVVKFFNETKGFGFIIPNSGES---EIFVHSTGLLAD----IRENDKVTYDVEEGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|238855264|ref|ZP_04645583.1| cold-shock DNA-binding domain protein [Lactobacillus jensenii
269-3]
gi|260664623|ref|ZP_05865475.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
SJ-7A-US]
gi|282932443|ref|ZP_06337868.1| cold-shock protein CspD [Lactobacillus jensenii 208-1]
gi|313471917|ref|ZP_07812409.1| conserved domain protein [Lactobacillus jensenii 1153]
gi|238832156|gb|EEQ24474.1| cold-shock DNA-binding domain protein [Lactobacillus jensenii
269-3]
gi|239529157|gb|EEQ68158.1| conserved domain protein [Lactobacillus jensenii 1153]
gi|260561688|gb|EEX27660.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
SJ-7A-US]
gi|281303392|gb|EFA95569.1| cold-shock protein CspD [Lactobacillus jensenii 208-1]
Length = 73
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ G+GFI + F+ +A+ G +L GQ V Y Q
Sbjct: 1 MRTGTVKQFDSAAGFGFI---DDDLTKASYFVFYTAIKENGYKSLEIGQRVRYQLAQGKK 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|302131878|ref|ZP_07257868.1| cold shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 47
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EG
Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 47
>gi|296448672|ref|ZP_06890536.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
gi|296253819|gb|EFH00982.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
OB3b]
Length = 195
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KGYGF+ P+ G D+ LH + + +G EG V + +
Sbjct: 32 GAIKWFDVSKGYGFVVPDD---GGADILLHVTTLRRSGFQTAYEGARVVCEAQKRPKG-- 86
Query: 65 YSAENLKLVPKSS 77
+ + +S+
Sbjct: 87 MQVFRVVAIDEST 99
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T DD+FLH V GL L G V Y
Sbjct: 125 IVKWFNRVKGFGFLTRGD---GTDDIFLHMETVRRYGLAELKPGDSVLVRYGDGPKG--L 179
Query: 66 SAENLKLVPKS 76
A ++ + +
Sbjct: 180 MATEVRPLESA 190
>gi|94732354|emb|CAK04626.1| novel protein (zgc:55584) [Danio rerio]
Length = 179
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ EG DVF+H+S + G +L EG+ V + + ++
Sbjct: 30 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 89
Query: 61 AN 62
Sbjct: 90 KG 91
>gi|302549706|ref|ZP_07302048.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
gi|302467324|gb|EFL30417.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
Length = 164
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++ KGYGFI P+ G+DVF+H + +A G LT G V +D +
Sbjct: 1 MAQGVVVRFDDVKGYGFIAPDN---GGEDVFVHVNDLAEPG-TTLTSGTRVVFDVLDGGR 56
Query: 62 NGKYSAENLKLVPKS 76
A ++ L +
Sbjct: 57 G--LKAYDVSLAGPA 69
>gi|209966917|ref|YP_002299832.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
gi|209960383|gb|ACJ01020.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
Length = 199
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+KW+ DKG+GF+T + G DVF+H+S + AGL +L G+ V +
Sbjct: 135 GSVKWFKDDKGFGFVTTDD---GGKDVFVHKSILRRAGLESLQSGERVLMRVTEAPKG 189
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++KW+N KG+GF+ P D FLH S ++ GL +L EG V +
Sbjct: 46 TVKWFNGVKGFGFVAPAD---GTPDAFLHASVLSRVGLSDLAEGAEVMVVIGPGPKGPQ- 101
Query: 66 SAENLKLVP 74
++LV
Sbjct: 102 ---VIRLVD 107
>gi|305665589|ref|YP_003861876.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170]
gi|88710345|gb|EAR02577.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170]
Length = 64
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KGYGFIT + E+G D+F+H +A+ L EG V Y+ +
Sbjct: 2 TGTVKFFNESKGYGFITND---ETGSDIFVHATALNGV---ELKEGDKVEYEEEEGRKG- 54
Query: 64 KYSAENLKLVP 74
A +++V
Sbjct: 55 -MVAAQVQVVD 64
>gi|86130475|ref|ZP_01049075.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
gi|85819150|gb|EAQ40309.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
Length = 64
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H+G++K++N KG+GFI E+ + F+H + + + + EG V ++ +
Sbjct: 1 MHKGTVKFFNETKGFGFI---NEEEANQEHFVHVTGL----IDEVREGDAVEFELKEGKK 53
Query: 62 NGKYSAENLKLVP 74
+A N+K++
Sbjct: 54 G--LNAVNVKVID 64
>gi|51245919|ref|YP_065803.1| hypothetical protein DP2067 [Desulfotalea psychrophila LSv54]
gi|50876956|emb|CAG36796.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54]
Length = 204
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G+IK +N +KGYGFITP+ G+DVFLH A GQ+++Y D
Sbjct: 1 MNFGTIKHWNDEKGYGFITPDN---GGNDVFLHIKAFKKRPHR-PEIGQVISYGTTSGDK 56
Query: 62 NGKYSAENLKLVPKSSN 78
G+ A N++ + S+
Sbjct: 57 -GRLRACNVQYMEDKSS 72
>gi|296276802|ref|ZP_06859309.1| CSD family cold shock protein [Staphylococcus aureus subsp.
aureus MR1]
Length = 55
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D A N+
Sbjct: 1 EKGFGFIERED----GSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRG--EQAANV 52
>gi|91081961|ref|XP_966594.1| PREDICTED: similar to Y-box binding protein isoform 1 [Tribolium
castaneum]
gi|270007364|gb|EFA03812.1| hypothetical protein TcasGA2_TC013925 [Tribolium castaneum]
Length = 297
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+ + ++ +G++V + V
Sbjct: 30 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVG 86
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 87 EKGNE--AANVT 96
>gi|55822802|ref|YP_141243.1| cold shock protein A [Streptococcus thermophilus CNRZ1066]
gi|55738787|gb|AAV62428.1| cold shock protein A [Streptococcus thermophilus CNRZ1066]
Length = 72
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D
Sbjct: 4 MNKGTINWFNADKGYGFIMADD----MQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 59
Query: 62 N 62
Sbjct: 60 G 60
>gi|118344374|ref|NP_001072010.1| Y-box protein 1/2/3 [Ciona intestinalis]
gi|70571490|dbj|BAE06759.1| Y-box protein 1/2/3 [Ciona intestinalis]
Length = 320
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G +KW+N GYGF+ + + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 28 GVVKWFNVRNGYGFVNRDD---NKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGE 84
Query: 61 ANGKYSAENLK 71
+A N+
Sbjct: 85 KGLPEAA-NVT 94
>gi|268532128|ref|XP_002631192.1| C. briggsae CBR-CEY-1 protein [Caenorhabditis briggsae]
gi|187036968|emb|CAP23634.1| CBR-CEY-1 protein [Caenorhabditis briggsae AF16]
Length = 202
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G++KW+N GYGFI + +D+F+H++A+ + L +L + + V +D V+
Sbjct: 22 KGTVKWFNVKNGYGFINRTD---TNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEG 78
Query: 60 DANGKYSAENLK 71
A ++
Sbjct: 79 SKG--LEASSVT 88
>gi|189502046|ref|YP_001957763.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497487|gb|ACE06034.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus
5a2]
Length = 67
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQN 59
+ G+IK++N KGYGFIT S D F+H +A+ + L EG VT++ V+
Sbjct: 1 MKTGTIKFFNESKGYGFITDSAS----QDHFVHVTALHDE-VKELDMKEGHKVTFETVET 55
Query: 60 DANGKYSAENLKL 72
+A N++L
Sbjct: 56 SRG--SNATNVRL 66
>gi|91977002|ref|YP_569661.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
BisB5]
gi|91683458|gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
BisB5]
Length = 219
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + VQ
Sbjct: 55 GVIKWFDASKGYGFIVPDN---GAADVLLHVTVLRRDGYQTAYEGARIVVECVQRAKG-- 109
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 110 YQAFRVVSMDEST 122
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 149 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKG--MM 203
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 204 AAEIQPESGAP 214
>gi|281490767|ref|YP_003352747.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|281374536|gb|ADA64057.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147]
Length = 66
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D
Sbjct: 1 MNKGTINWFNADKGYGFIMADDR----QDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 GRY--ASNVHK 65
>gi|325918449|ref|ZP_08180573.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
gi|325535344|gb|EGD07216.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
ATCC 35937]
Length = 57
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
N KG+GFI+ E G+DVF+H A+ G +L EGQ V++ VQ A+ +
Sbjct: 1 NDAKGFGFISREN----GEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKG--LQADAV 54
Query: 71 KLV 73
++V
Sbjct: 55 QVV 57
>gi|56755411|gb|AAW25885.1| SJCHGC05173 protein [Schistosoma japonicum]
gi|226470954|emb|CAX76910.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470956|emb|CAX76911.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470958|emb|CAX76912.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470960|emb|CAX76913.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470962|emb|CAX76914.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470964|emb|CAX76915.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470966|emb|CAX76916.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226470968|emb|CAX76917.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473230|emb|CAX71301.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473232|emb|CAX71302.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473234|emb|CAX71303.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473236|emb|CAX71304.1| putative DNA-binding protein [Schistosoma japonicum]
gi|226473238|emb|CAX71305.1| putative DNA-binding protein [Schistosoma japonicum]
Length = 175
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RG +KW+N GYGFIT ++ D+F+H++A++ +L E + V + V+
Sbjct: 19 RGVVKWFNVKAGYGFITRSDTSS---DIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75
Query: 60 DANGKYSAENLK 71
D A ++
Sbjct: 76 DKG--VEASDVT 85
>gi|325106181|ref|YP_004275835.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
12145]
gi|324975029|gb|ADY54013.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
12145]
Length = 63
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFITP GDD+F+H S + + + E +V ++
Sbjct: 1 MKEGKVKFFNETKGFGFITPLN---GGDDIFVHSSGLETE----IRENDVVVFEVENGRK 53
Query: 62 NGKYSAENLKL 72
+A N++L
Sbjct: 54 G--LNAVNVRL 62
>gi|91217017|ref|ZP_01253980.1| cold shock protein [Psychroflexus torquis ATCC 700755]
gi|91184888|gb|EAS71268.1| cold shock protein [Psychroflexus torquis ATCC 700755]
Length = 63
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K++N KGYGFIT + E+G+D+F+H + + +L EG V Y+ +
Sbjct: 2 QGKVKFFNESKGYGFITND---ETGEDIFVHVTGLNGE---SLNEGDEVEYNEEEGRKG- 54
Query: 64 KYSAENLKLV 73
+A +++L+
Sbjct: 55 -MNASDVRLI 63
>gi|320591342|gb|EFX03781.1| cold-shock protein [Grosmannia clavigera kw1407]
Length = 68
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K +N KG+GFIT D + +++ + G L G+ V +
Sbjct: 1 MTTGTVKSFNEAKGFGFITASD---GSGDYYAQFASIVTHGFKTLKVGEHVNFVPSTGPH 57
Query: 62 NGKYSAENLKLVP 74
A+N++++
Sbjct: 58 G--REAKNIRIIS 68
>gi|167847488|ref|ZP_02472996.1| cold-shock domain family protein [Burkholderia pseudomallei
B7210]
Length = 78
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+GFITPEG G+D+F H S + G L E Q V ++ A N+K +
Sbjct: 26 FGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFEVKTGPKG--LQAANIKPL 78
>gi|56754487|gb|AAW25431.1| unknown [Schistosoma japonicum]
Length = 104
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
+G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83
Query: 60 DAN 62
D
Sbjct: 84 DKG 86
>gi|325286552|ref|YP_004262342.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324322006|gb|ADY29471.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
7489]
Length = 77
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K+YN KGYGFIT + E+G D+F+H +++ L EG V Y V+ +
Sbjct: 16 TGTVKFYNDSKGYGFITND---ETGKDIFVHATSLNGV---ELNEGDKVEY--VEEEGRK 67
Query: 64 KYSAENLKLV 73
A ++++
Sbjct: 68 GVVAAQVQVI 77
>gi|221116100|ref|XP_002159745.1| PREDICTED: similar to Y box binding protein 1 [Hydra
magnipapillata]
Length = 308
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+
Sbjct: 38 GTVKWFNVRNGYGFIHRNDTQ---NDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVEGV 94
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 95 KG--HEAINVT 103
>gi|197294834|ref|YP_001799375.1| cold shock protein [Candidatus Phytoplasma australiense]
gi|171854161|emb|CAM12154.1| Cold shock protein, similar to Csp of Bacteriophage bIL312
[Candidatus Phytoplasma australiense]
Length = 77
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59
+G+ +W++ DKGYGFI + G DVF+H S++ + G L + V + ++
Sbjct: 5 RQQGTCRWFSGDKGYGFIV----SAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEH 60
Query: 60 DANGKYSAENLKLV 73
D + A ++ ++
Sbjct: 61 D--NRIQAVDVVVI 72
>gi|116326594|ref|YP_796515.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
subsp. cremoris SK11]
gi|125624080|ref|YP_001032563.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris
MG1363]
gi|190571793|ref|YP_001966472.1| CSPC [Lactococcus lactis]
gi|281492699|ref|YP_003354679.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|76574949|gb|ABA47418.1| cold shock protein C [Lactococcus lactis]
gi|108736192|gb|ABG00321.1| CSPC [Lactococcus lactis]
gi|116108962|gb|ABJ74084.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
cremoris SK11]
gi|124492888|emb|CAL97847.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris
MG1363]
gi|281376356|gb|ADA65846.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
gi|300070849|gb|ADJ60249.1| cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
gi|326406196|gb|ADZ63267.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56]
gi|326407855|gb|ADZ64926.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56]
Length = 66
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D
Sbjct: 1 MNKGTINWFNADKGYGFIMADD----MQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 GRY--ASNVHK 65
>gi|332187120|ref|ZP_08388860.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
gi|332012820|gb|EGI54885.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
Length = 189
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +G+GF + T DV LH + + S G +L EG V V+
Sbjct: 25 GVVKWFDVTRGFGFAVADDLTYG--DVLLHFTVLQSHGRRSLPEGARVEMIAVERGRG-- 80
Query: 65 YSAENL 70
Y A +
Sbjct: 81 YQAREV 86
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KGYGF+ + G D+F+H + G+ + GQ + V
Sbjct: 125 VKWFNRLKGYGFLLRDS---DGADIFVHMETLRRGGIVEVEPGQPLMARIVDGPKGPLAV 181
Query: 67 AE 68
A
Sbjct: 182 AV 183
>gi|298248814|ref|ZP_06972619.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM
44963]
gi|297551473|gb|EFH85339.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM
44963]
Length = 278
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G ++W++P+ G G I E + G+++F H +A+ G + G V ++ V+ A
Sbjct: 211 AQGVVRWFDPNAGIGIIVREEA---GEEIFFHFTALPGQGYRTIRAGVPVQFEIVEGRAG 267
Query: 63 GKYSAENLKLV 73
+A N++ +
Sbjct: 268 --LAARNIQQI 276
>gi|259503042|ref|ZP_05745944.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259168908|gb|EEW53403.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 67
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ KG+GFIT ++F+H S + L G V+ VQ
Sbjct: 1 MLEGKVKSFDEQKGWGFITV----PQEGEIFVHYSGIEGQHRRVLHPGDRVSLVVVQGKR 56
Query: 62 NGKYSAENLKLVP 74
A +++++
Sbjct: 57 G--PQAAHVQVMS 67
>gi|222479737|ref|YP_002565974.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452639|gb|ACM56904.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 64
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI + + DDVF H V G +L EGQ V ++ ++D
Sbjct: 1 MATGKVDFFNDTGGYGFIETDDA---DDDVFFHMEDV---GGPDLEEGQEVEFEIEESDK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|153009253|ref|YP_001370468.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151561141|gb|ABS14639.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 193
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ +D+ LH +++ G EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRNGDRG 83
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGEGDK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|147903687|ref|NP_001080918.1| protein lin-28 homolog A [Xenopus laevis]
gi|82243501|sp|Q8JHC4|LN28A_XENLA RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|21842301|gb|AAM77750.1|AF521098_1 RNA-binding protein LIN-28A [Xenopus laevis]
gi|213623350|gb|AAI69625.1| RNA-binding protein LIN-28A [Xenopus laevis]
gi|213626540|gb|AAI69597.1| RNA-binding protein LIN-28A [Xenopus laevis]
Length = 195
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGD----DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF+T + DVF+H+S + G +L EG+ V + + ++
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 95
Query: 61 AN 62
Sbjct: 96 KG 97
>gi|145298105|ref|YP_001140946.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850877|gb|ABO89198.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 219
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYV 57
M ++G I +N +G+GFITP EG + G ++F+H SA+ S G +L G+ V+Y
Sbjct: 1 MRYQGRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDG--SLPNVGERVSYQLG 58
Query: 58 QNDANGKYSAENL 70
+ K A +
Sbjct: 59 TG-KDDKPRAVQV 70
>gi|301347534|ref|ZP_07228275.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB056]
Length = 60
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
N KG+GFI + G DVF H S + + G L EGQ V + Q A N+
Sbjct: 1 NETKGFGFIQTD----EGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG--PQASNI 54
Query: 71 KLVPKS 76
+V +
Sbjct: 55 TIVTNA 60
>gi|227821970|ref|YP_002825941.1| cold shock protein [Sinorhizobium fredii NGR234]
gi|227340970|gb|ACP25188.1| cold shock protein [Sinorhizobium fredii NGR234]
Length = 192
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KG+GFI P+ DV LH + + G + EG V + +
Sbjct: 27 TGVIKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTVLEGARVVALIQKRERG 82
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFGDGEK-GLMA 177
Query: 67 AE 68
AE
Sbjct: 178 AE 179
>gi|46202227|ref|ZP_00053533.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
MS-1]
Length = 167
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K+++ +KG+GF+ + E G DVF+H A+ +G+ L GQ V
Sbjct: 104 GVVKFFSAEKGFGFVACD---EGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG-- 158
Query: 65 YSAENLKLV 73
A+ + ++
Sbjct: 159 PQADTVAII 167
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
++KW+N KG+GF+ P D FLH SA+ AGL + EG + D +
Sbjct: 19 TVKWFNASKGFGFVAPSD---GSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 74
>gi|146197784|dbj|BAF57611.1| Y-Box factor protein [Dugesia japonica]
Length = 178
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQNDA 61
G +KWYN KGYGFI + +DVF+H+SA++ +L E + V +D V+
Sbjct: 5 GKVKWYNVKKGYGFIHRDDV---DEDVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGSK 61
Query: 62 NGKYSAENLK 71
+ A N+
Sbjct: 62 GNE--AMNVT 69
>gi|189347308|ref|YP_001943837.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM
245]
gi|189341455|gb|ACD90858.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM
245]
Length = 85
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ R +KW++ KGYGFI + G+DVF+H SA+ S L + V + +
Sbjct: 1 MERSKVKWFDGKKGYGFIV---NPNGGEDVFVHFSAIVSEQTFKVLNQDADVEFVLEKTQ 57
Query: 61 ANGKYSAENLK 71
Y A+N++
Sbjct: 58 KG--YQAKNVR 66
>gi|322368663|ref|ZP_08043230.1| cold shock protein [Haladaptatus paucihalophilus DX253]
gi|320551394|gb|EFW93041.1| cold shock protein [Haladaptatus paucihalophilus DX253]
Length = 64
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI + + DDVF H V G +L EGQ V +D Q D
Sbjct: 1 MAKGTVTFFNDTGGYGFIETDDA---DDDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A NL+ +
Sbjct: 55 GPR--ATNLQRL 64
>gi|39935591|ref|NP_947867.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris CGA009]
gi|39649444|emb|CAE27966.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009]
Length = 235
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ
Sbjct: 71 GVIKWFDASKGYGFVVPDN---GWPDVLLHVTVLRRDGYQTAYEGARIVVECVQRAKG-- 125
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 126 YQAFRIVSMDEST 138
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 165 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKG--MM 219
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 220 AAEIQPENGAP 230
>gi|296133967|ref|YP_003641214.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
gi|296032545|gb|ADG83313.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
Length = 714
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+IK P+K +GFI + G+DVF S + A EG V ++ Q +
Sbjct: 1 MTEGTIKKLFPEKQFGFIQLDN---DGEDVFFRFSLLKGA---KPYEGMRVGFEIEQGEK 54
Query: 62 NGKYSAENLKLVPKSS 77
+ A NL++V S
Sbjct: 55 GPR--ARNLRIVEDGS 68
>gi|22901742|gb|AAN10050.1| Y-box protein Ct-p50 [Chironomus tentans]
Length = 317
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + D+F+H+SA+ + ++ +G++V +D V
Sbjct: 31 TGTVKWFNVKSGYGFINRND---NKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAG 87
Query: 60 DANGKYSAENLK 71
+ A N+
Sbjct: 88 EKG--SEAANVT 97
>gi|123441859|ref|YP_001005842.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088820|emb|CAL11626.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318606254|emb|CBY27752.1| cold shock protein CspB [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 69
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++
Sbjct: 6 GRVKWFNQSEGYGFISPHDGSL---DVYVSKTAIANTKNKSLSEGQDVEFSTYRSIHG-- 60
Query: 65 YSAENL 70
SA ++
Sbjct: 61 PSAADV 66
>gi|261344285|ref|ZP_05971929.1| cold-shock DNA-binding domain protein [Providencia rustigianii
DSM 4541]
gi|282567888|gb|EFB73423.1| cold-shock DNA-binding domain protein [Providencia rustigianii
DSM 4541]
Length = 71
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +KW++ +GYGFI+P GDD+F+ ++A+ + +L+EGQ V + +N
Sbjct: 6 HMGRVKWFDAKEGYGFISPCN---GGDDIFVTTKSLANKKIKSLSEGQNVEFSVTRNSDG 62
>gi|146300393|ref|YP_001194984.1| cold-shock DNA-binding domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146154811|gb|ABQ05665.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae
UW101]
Length = 63
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N +KG+GFITP G +VF+H S ++ ++ + V YD +
Sbjct: 1 MQEGTVKFFNEEKGFGFITPNN---GGAEVFVHASGLSE----SIRQDDAVRYDIEEGRK 53
Query: 62 NGKYSAENLKL 72
+A N+ +
Sbjct: 54 G--PNAVNVVV 62
>gi|298253963|ref|ZP_06977550.1| cold shock protein [Gardnerella vaginalis 5-1]
gi|297532106|gb|EFH71081.1| cold shock protein [Gardnerella vaginalis 5-1]
Length = 124
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
+WY+ KGYGFI + G DVFL +A+ + +L +G V + ++ A
Sbjct: 2 RWYDTQKGYGFIVGDD----GKDVFLPAAALPVT-VKSLHKGTRVEFSVIEGRKG--PQA 54
Query: 68 ENLKLVPKSSN 78
L ++ + +
Sbjct: 55 MGLNVIATAPS 65
>gi|55378476|ref|YP_136326.1| cold shock protein [Haloarcula marismortui ATCC 43049]
gi|55231201|gb|AAV46620.1| cold shock protein [Haloarcula marismortui ATCC 43049]
Length = 64
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI + +S +DVF H + +L EGQ V ++ Q D
Sbjct: 1 MATGTVDFFNDTGGYGFI---DTEDSDEDVFFHMEDIDG---PDLEEGQEVEFEIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A+NL +
Sbjct: 55 GPR--AKNLTRL 64
>gi|76803160|ref|YP_331255.1| cold shock protein [Natronomonas pharaonis DSM 2160]
gi|76559025|emb|CAI50623.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
Length = 64
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + +DVF H V G +L EGQ V +D + D
Sbjct: 1 MATGTVDFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEEADK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|295134497|ref|YP_003585173.1| cold shock protein [Zunongwangia profunda SM-A87]
gi|294982512|gb|ADF52977.1| cold shock protein [Zunongwangia profunda SM-A87]
Length = 63
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K++N KG+GFIT EG D F+H + + + + EG V +D +
Sbjct: 1 MSKGTVKFFNDSKGFGFITEEGV---DKDHFVHVTGL----IDEIREGDEVKFDLQEGKR 53
Query: 62 NGKYSAENLKLV 73
+A N++++
Sbjct: 54 G--LNAVNVEVI 63
>gi|149278198|ref|ZP_01884336.1| cold shock protein [Pedobacter sp. BAL39]
gi|255529920|ref|YP_003090292.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
gi|149230964|gb|EDM36345.1| cold shock protein [Pedobacter sp. BAL39]
gi|255342904|gb|ACU02230.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
Length = 63
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P ++F+H + + + + E V YD
Sbjct: 1 MQEGTVKFFNVTKGFGFIIPAN---GDSEIFVHSTGL----IDEIRENDKVEYDVESGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAINVKVI 63
>gi|192291180|ref|YP_001991785.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
gi|192284929|gb|ACF01310.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 235
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ
Sbjct: 71 GVIKWFDASKGYGFVVPDN---GWPDVLLHVTVLRRDGYQTAYEGARIVVECVQRAKG-- 125
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 126 YQAFRIVSMDEST 138
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 165 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKG--MM 219
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 220 AAEIQPENGAP 230
>gi|91081963|ref|XP_975913.1| PREDICTED: similar to Y-box binding protein isoform 2 [Tribolium
castaneum]
Length = 286
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N GYGFI + +DVF+H+SA+ + ++ +G++V + V
Sbjct: 30 TGTVKWFNVKSGYGFINRNDTK---EDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVG 86
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 87 EKGNE--AANVT 96
>gi|238789311|ref|ZP_04633098.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641]
gi|238792392|ref|ZP_04636026.1| Cold shock-like protein [Yersinia intermedia ATCC 29909]
gi|238722643|gb|EEQ14296.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641]
gi|238728318|gb|EEQ19838.1| Cold shock-like protein [Yersinia intermedia ATCC 29909]
Length = 65
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++
Sbjct: 2 GRVKWFNQSEGYGFISPHDGSL---DVYVSKTAIANTKNKSLSEGQDVEFSTYRSIHG-- 56
Query: 65 YSAENL 70
SA ++
Sbjct: 57 PSAADV 62
>gi|118344436|ref|NP_001072039.1| Y-box protein 1/2/3 [Ciona intestinalis]
gi|70571495|dbj|BAE06760.1| Y-box protein 1/2/3 [Ciona intestinalis]
Length = 273
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G +KW+N GYGF+ + + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 28 GVVKWFNVRNGYGFVNRDD---NKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGE 84
Query: 61 ANGKYSAENLK 71
+A N+
Sbjct: 85 KGLPEAA-NVT 94
>gi|260061051|ref|YP_003194131.1| cold shock protein [Robiginitalea biformata HTCC2501]
gi|88785183|gb|EAR16352.1| cold shock protein [Robiginitalea biformata HTCC2501]
Length = 64
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KGYGFIT + +G D+F+H +A+ L +G V Y +
Sbjct: 2 TGTVKFFNESKGYGFITNDD---TGRDIFVHATALDGL---VLNQGDKVEYQETEGRKG- 54
Query: 64 KYSAENLKLV 73
A ++ ++
Sbjct: 55 -MVAADVHVI 63
>gi|331243621|ref|XP_003334453.1| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313443|gb|EFP90034.1| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 341
Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
+G K++N KG+GFI + +VF+H +++ S G +L E V Y
Sbjct: 48 KGVCKFFNSQKGFGFINDDHPEELGNQEVFVHYTSIESKGNFRSLAE---VEYVVAPGQK 104
Query: 62 NGKYSAENLK 71
+ A +
Sbjct: 105 G--FQATEVT 112
>gi|110667820|ref|YP_657631.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
gi|109625567|emb|CAJ51994.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
Length = 64
Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E S +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MAKGTVAFFNDTGGYGFIESEDSE---EDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A NL+ +
Sbjct: 55 GPR--ATNLQRL 64
>gi|3821915|gb|AAC69699.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
gi|3821919|gb|AAC69701.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
Length = 50
Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G D+F H SA+ S G L EGQ V +D + A N
Sbjct: 1 KGFGFITSE----EGKDLFAHFSAIQSDGFKTLDEGQKVEFDVEEGQRG--PQAAN 50
>gi|227544866|ref|ZP_03974915.1| major cold shock protein [Lactobacillus reuteri CF48-3A]
gi|227185140|gb|EEI65211.1| major cold shock protein [Lactobacillus reuteri CF48-3A]
Length = 81
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K ++ KG+GFIT ++F+H S + L + V+ VQ
Sbjct: 15 MLKGKVKSFDEQKGWGFITV----PHEGEIFVHYSGIEGTRRRILHPDEEVSLVIVQGQK 70
Query: 62 NGKYSAENLKLV 73
A +++++
Sbjct: 71 G--PQAAHVRVL 80
>gi|304393756|ref|ZP_07375684.1| cold shock protein [Ahrensia sp. R2A130]
gi|303294763|gb|EFL89135.1| cold shock protein [Ahrensia sp. R2A130]
Length = 216
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KG+GF+ P+ DV LH S + G EG + + V+
Sbjct: 52 GAIKWFDVSKGFGFVVPDD---DMPDVLLHVSCLRDDGFQTAHEGARIVCEVVRKARG-- 106
Query: 65 YSAENL 70
A +
Sbjct: 107 LQAFRV 112
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ V Y D
Sbjct: 146 VKWFNRTKGFGFLTQ---GEGTEDIFIHMETLRRFGLTELRPGQHVMVRYGHGDKG--LM 200
Query: 67 AENLKLVPKSS 77
A + V S
Sbjct: 201 AAEVHPVAGGS 211
>gi|86750055|ref|YP_486551.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris HaA2]
gi|86573083|gb|ABD07640.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
HaA2]
Length = 221
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ DV LH + + G EG + + VQ
Sbjct: 57 GVIKWFDASKGYGFIVPDN---GAADVLLHVTVLRRDGYQTAYEGARIVVECVQRAKG-- 111
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 112 YQAFRVVSMDEST 124
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 151 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKG--MM 205
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 206 AAEIQPENGAP 216
>gi|110667350|ref|YP_657161.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
gi|109625097|emb|CAJ51516.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
Length = 98
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI+ E + +DVF H + G +L EGQ + ++ VQ D
Sbjct: 35 MAQGTVDFFNDTGGYGFISTEDA---DEDVFFHMEDI---GGPDLEEGQDLEFEIVQADK 88
Query: 62 NGKYSAENLKLV 73
+ A+N++ +
Sbjct: 89 GPR--AKNVERL 98
>gi|11493820|gb|AAG35657.1|AF204736_1 cold shock protein C [Yersinia enterocolitica]
Length = 46
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
+G +KW+N KG+GFITP DVF+H SA+ G L EGQ
Sbjct: 2 KGQVKWFNESKGFGFITPAD---GSKDVFVHFSAIQDQGFKTLAEGQ 45
>gi|328545337|ref|YP_004305446.1| Cold-shock DNA-binding domain protein [polymorphum gilvum
SL003B-26A1]
gi|326415079|gb|ADZ72142.1| Cold-shock DNA-binding domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 66
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++KW++ +G G I P GDDV + ++ +G+ +L EGQLV +D
Sbjct: 1 MNHGNVKWFDSRRGIGAIEP----HEGDDVIVELDSLRRSGIESLKEGQLVAFDMAW--R 54
Query: 62 NGKYSAENLKLV 73
G+ AE++K++
Sbjct: 55 AGRSLAEDVKVL 66
>gi|134098539|ref|YP_001104200.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL
2338]
gi|291003245|ref|ZP_06561218.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL
2338]
gi|133911162|emb|CAM01275.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL
2338]
Length = 135
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
+ G + ++ +GYGF+ P+ + G+DVF+H + + + +L G V ++ +
Sbjct: 1 MQTGRVVRFDEVRGYGFVAPD---QGGEDVFVHANDIRAD--KHLFRPGLRVAFEVEDGE 55
Query: 61 ANGKYSAENLKLVPKSS 77
A ++ +V +
Sbjct: 56 RG--LKASDVHIVEQPG 70
>gi|307610887|emb|CBX00504.1| cold shock-like protein cspE [Legionella pneumophila 130b]
Length = 56
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
RG +KW+N KG+GFI +G D F+H SA+ G NL +G V + Q
Sbjct: 6 RGKVKWFNKAKGFGFI-----ESNGKDYFVHFSAIQGNGFKNLPDGARVLFKVGQG 56
>gi|163786612|ref|ZP_02181060.1| cold shock protein, DNA-binding [Flavobacteriales bacterium
ALC-1]
gi|159878472|gb|EDP72528.1| cold shock protein, DNA-binding [Flavobacteriales bacterium
ALC-1]
Length = 63
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KG+GFIT + E+G D+F+H S + L EG V Y +
Sbjct: 2 TGTVKFFNDSKGFGFIT---NEETGKDIFVHVSNLNGV---ELREGDNVEYTEEEGRKG- 54
Query: 64 KYSAENLKLV 73
A N++++
Sbjct: 55 -MVAANVQVL 63
>gi|116627692|ref|YP_820311.1| cold shock protein A [Streptococcus thermophilus LMD-9]
gi|116100969|gb|ABJ66115.1| cold-shock DNA-binding protein family [Streptococcus thermophilus
LMD-9]
gi|312278224|gb|ADQ62881.1| Cold shock-like protein cspA [Streptococcus thermophilus ND03]
Length = 66
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D
Sbjct: 1 MNKGTINWFNADKGYGFIMADD----MQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 56
Query: 62 N 62
Sbjct: 57 G 57
>gi|125838843|ref|XP_001340141.1| PREDICTED: protein lin-28 homolog A-like [Danio rerio]
Length = 198
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFI---TPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF+ T +G DVF+H+S + G +L EG+ V + + ++
Sbjct: 33 GVCKWFNVRMGFGFLSMNTRDGVPLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 92
Query: 61 AN 62
Sbjct: 93 KG 94
>gi|110597967|ref|ZP_01386248.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
gi|110340416|gb|EAT58905.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
Length = 70
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
+ G +KW++ KG+GFI + G+D+F+H S + + L + V ++
Sbjct: 1 MVNGKVKWFDVRKGFGFI---LNPNGGEDIFVHFSNIVSEEKFRFLNQDADVDFELEA-- 55
Query: 61 ANGKYSAENLK 71
+ A N++
Sbjct: 56 RGNRLQALNVR 66
>gi|159162382|pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding
Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1)
Determined By Nmr (10 Lowest Energy Structures)
Length = 79
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 11 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 67
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 68 KG--AEAANVT 76
>gi|224000840|ref|XP_002290092.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
gi|220973514|gb|EED91844.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
pseudonana CCMP1335]
Length = 72
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
++ KG+GFI P+ DVF+H++++ G +L E + V + + D NG+ A +
Sbjct: 1 FDTAKGFGFIVPDD---GTKDVFVHQTSIKVEGFRSLAENEAVEFRV-ETDTNGRLRALD 56
Query: 70 LK 71
+
Sbjct: 57 VT 58
>gi|38637833|ref|NP_942807.1| hypothetical protein PHG169 [Ralstonia eutropha H16]
gi|32527171|gb|AAP85921.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 191
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K ++ DKG+GFI DVF H +A+ + + T G V+++ +
Sbjct: 1 MKKAGQVKTWHADKGFGFI---DVYADMKDVFFHVTALQTRAV-TPTPGDRVSFELGKG- 55
Query: 61 ANGKYSAENLKLV 73
+G+ A N+ +V
Sbjct: 56 KDGRIQALNVAIV 68
>gi|49475595|ref|YP_033636.1| cold shock protein [Bartonella henselae str. Houston-1]
gi|49238402|emb|CAF27629.1| Cold shock protein [Bartonella henselae str. Houston-1]
Length = 191
Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ + D+ LH + + G + EG V + + K
Sbjct: 28 GVIKWFDGSKGYGFIVPDL--PNCPDILLHVTVMRRDGFQTVLEGAKVVCAVEKTERGLK 85
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 118 ERAIVKWFNRDKGFGFLSR---GQGTEDIFVHMETLRRFGLAELRSGQVVLVRFGKGEKG 174
>gi|160879311|ref|YP_001558279.1| cold-shock DNA-binding domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160427977|gb|ABX41540.1| cold-shock DNA-binding domain protein [Clostridium
phytofermentans ISDg]
Length = 70
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDA 61
+ G++KWY+ ++GYGF+ ST G DVFLH S + G + EG+ + +D ++ +
Sbjct: 4 YTGTVKWYDSERGYGFV----STNDGRDVFLHHSQIKEKGFDKEVHEGESIGFDIIEQEK 59
Query: 62 NGKYSAENLKL 72
+A N+
Sbjct: 60 G--PAAINVHK 68
>gi|217976738|ref|YP_002360885.1| cold-shock DNA-binding domain protein [Methylocella silvestris
BL2]
gi|217502114|gb|ACK49523.1| cold-shock DNA-binding domain protein [Methylocella silvestris
BL2]
Length = 189
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFITP+ G DV LH + + G EG + + +
Sbjct: 28 GEIKWFDVAKGYGFITPDD---GGPDVLLHVTILRRDGYAAAHEGARIVCEAARRAKG 82
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T +D+F+H + G+ L G+ + +
Sbjct: 119 VVKWFNRMKGFGFLTRGD---GTEDIFIHMETLRHYGIGELRPGESLLVRFGDGPKG--L 173
Query: 66 SAENLKLVPKSS 77
A ++ + ++
Sbjct: 174 MAAEVRPLNAAA 185
>gi|260428547|ref|ZP_05782526.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
gi|260423039|gb|EEX16290.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
Length = 180
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + + D
Sbjct: 17 GKVKWFDPVKGFGFVVAD---EGGPDILLHANVLRNFGQSSVADGARIEVAVQRTDRG-- 71
Query: 65 YSAENLKLVPK 75
A + +
Sbjct: 72 IQATEVHHIEP 82
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + DDVF+H + +GL +L G+ + +
Sbjct: 111 RVKWFDKAKGFGFANVFGRS---DDVFIHIEVLRRSGLADLQPGEALAIRLIDGKRG--L 165
Query: 66 SAENLKLVPKS 76
A + +
Sbjct: 166 MATEVSAWEAA 176
>gi|262203035|ref|YP_003274243.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
gi|262086382|gb|ACY22350.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
43247]
Length = 164
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + Y+ ++G+GF+ PE G DVFLH + + +L G V++D + D K
Sbjct: 9 GKVVHYDTNRGFGFLAPES---GGADVFLHINDIDIDE-SSLKPGAKVSFDVEETDRGAK 64
Query: 65 YSAENLKLVPKSS 77
A N+ + ++
Sbjct: 65 --AVNVAVTEEAP 75
>gi|238757626|ref|ZP_04618810.1| Cold shock-like protein [Yersinia aldovae ATCC 35236]
gi|238795858|ref|ZP_04639371.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969]
gi|238704131|gb|EEP96664.1| Cold shock-like protein [Yersinia aldovae ATCC 35236]
gi|238720321|gb|EEQ12124.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969]
gi|330862904|emb|CBX73040.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
Length = 77
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++
Sbjct: 14 GRVKWFNQSEGYGFISPHDGSL---DVYVSKTAIANTKNKSLSEGQDVEFSTYRSIHG-- 68
Query: 65 YSAENL 70
SA ++
Sbjct: 69 PSAADV 74
>gi|254488265|ref|ZP_05101470.1| cold shock protein [Roseobacter sp. GAI101]
gi|214045134|gb|EEB85772.1| cold shock protein [Roseobacter sp. GAI101]
Length = 182
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + +
Sbjct: 11 TTGLVKWFDPAKGFGFVVSD---EGGPDILLHVNVLRNYGQSSVADGARIELTAHETQRG 67
Query: 63 GKYSAENLKLV 73
A + +
Sbjct: 68 --VQATQVHAI 76
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + DD+FLH + +GL +L G+ + + + G
Sbjct: 107 RVKWFDKSKGFGFANVFGRS---DDIFLHIEVLRQSGLSDLQPGEALALRVIMGER-GHM 162
Query: 66 SAEN 69
+AE
Sbjct: 163 AAEV 166
>gi|148543833|ref|YP_001271203.1| cold-shock DNA-binding protein family protein [Lactobacillus
reuteri DSM 20016]
gi|184153234|ref|YP_001841575.1| cold shock protein [Lactobacillus reuteri JCM 1112]
gi|194468389|ref|ZP_03074375.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
100-23]
gi|300909914|ref|ZP_07127374.1| major cold shock protein [Lactobacillus reuteri SD2112]
gi|325682636|ref|ZP_08162153.1| major cold shock protein [Lactobacillus reuteri MM4-1A]
gi|62422038|gb|AAX82601.1| putative cold shock protein [Lactobacillus reuteri]
gi|148530867|gb|ABQ82866.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM
20016]
gi|183224578|dbj|BAG25095.1| cold shock protein [Lactobacillus reuteri JCM 1112]
gi|194453242|gb|EDX42140.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
100-23]
gi|300892562|gb|EFK85922.1| major cold shock protein [Lactobacillus reuteri SD2112]
gi|324978475|gb|EGC15425.1| major cold shock protein [Lactobacillus reuteri MM4-1A]
Length = 67
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K ++ KG+GFIT ++F+H S + L + V+ VQ
Sbjct: 1 MLKGKVKSFDEQKGWGFITV----PHEGEIFVHYSGIEGTRRRILHPDEEVSLVIVQGQK 56
Query: 62 NGKYSAENLKLV 73
A +++++
Sbjct: 57 G--PQAAHVRVL 66
>gi|92117669|ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91800563|gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
X14]
Length = 217
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ DV LH + + G + EG + + VQ
Sbjct: 53 GVIKWFDASKGYGFIIPDN---GWSDVLLHVTVLRRDGYQTVYEGARLICECVQRAKG 107
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 147 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQFVLVRFGPGSKG--MM 201
Query: 67 AENLKLVPKSS 77
A ++ +
Sbjct: 202 AAEIQPETGAP 212
>gi|255531633|ref|YP_003092005.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
gi|255344617|gb|ACU03943.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
Length = 63
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P ++F+H SA+++ + E V+Y+
Sbjct: 1 MPEGTVKFFNESKGFGFIIPSN---GDPELFVHASALSA----PVRENDRVSYEVENGKK 53
Query: 62 NGKYSAENLKLV 73
+A +K +
Sbjct: 54 G--LNATKVKKI 63
>gi|225011297|ref|ZP_03701753.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-3C]
gi|225004553|gb|EEG42519.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-3C]
Length = 63
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N KGYGFIT + S G D F+H +A+ + EG V+Y+ +++
Sbjct: 2 TGTVKFFNGSKGYGFITNDES---GKDTFVHATALNGL---QINEGDKVSYEEQESEKG- 54
Query: 64 KYSAENLKLV 73
+A ++ L+
Sbjct: 55 -MTAVDVALL 63
>gi|222085830|ref|YP_002544361.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221723278|gb|ACM26434.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 192
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +KW++ KG+GFI P+ DV LH + + G + EG + + +
Sbjct: 28 GVVKWFDVAKGFGFIVPDN---GMQDVLLHVTCLRRDGYQTILEGTRIVALIQRRERG 82
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLAELRPGQVVLVRFGPGEK-GLMA 177
Query: 67 AENLKLVPKSSN 78
AE + P + +
Sbjct: 178 AE---IHPDAPS 186
>gi|300173064|ref|YP_003772230.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
gi|299887443|emb|CBL91411.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
Length = 74
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K + ++GYG+ITP+ G+DVF+H + + G +L +G+ V Y VQ
Sbjct: 1 MKTGIVKIWQKERGYGYITPDD---GGEDVFVHFNGIDMIGFKSLIQGEKVNYVLVQGFK 57
Query: 62 NGKYSAENLKLVPKSS 77
N Y A + + K +
Sbjct: 58 N--YQAAQVSPIMKKA 71
>gi|3892588|emb|CAA76696.1| cold shock protein C [Lactococcus lactis subsp. cremoris MG1363]
Length = 66
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G I W+N DKGYGFI + DVF + ++ EGQ VT+D
Sbjct: 1 MNKGKINWFNADKGYGFIMADD----MQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSR 56
Query: 62 NGKYSAENLKL 72
A N+
Sbjct: 57 GRY--ASNVHK 65
>gi|326936337|ref|XP_003214212.1| PREDICTED: protein lin-28 homolog A-like, partial [Meleagris
gallopavo]
Length = 191
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ +S DVF+H+S + G +L EG+ V + + ++
Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSS 84
Query: 61 AN 62
Sbjct: 85 KG 86
>gi|72008824|ref|XP_785816.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus
purpuratus]
gi|115974523|ref|XP_001178393.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus
purpuratus]
Length = 326
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + + +DVF+H+SA+ ++ +G++V +D V+
Sbjct: 26 GTVKWFNVKNGYGFINRDDTK---EDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGT 82
Query: 61 AN 62
Sbjct: 83 KG 84
>gi|311899759|dbj|BAJ32167.1| putative cold shock protein [Kitasatospora setae KM-6054]
Length = 71
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYDYVQN 59
+ G++KW++ YG+ITP+G G DV ++ +V + L +GQ V YD
Sbjct: 1 METGTVKWFDVHHAYGYITPDG---GGPDVAVYYDSVLADTDEHRFLHQGQRVRYDETVQ 57
Query: 60 DANGKYSAENLKLV 73
++ + AE ++ V
Sbjct: 58 ES--RPVAERVRPV 69
>gi|1483311|emb|CAA68079.1| Y-box protein [Dugesia japonica]
Length = 266
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N +GYGF+ + +D+F+H+SA+ + ++ EG+ + +D V+
Sbjct: 30 TGKVKWFNVKRGYGFVCRND---NQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKG 86
Query: 60 DANGKYSAENLKLVP 74
+ A N+ +
Sbjct: 87 AKGNE--AANVSAID 99
>gi|61837945|ref|XP_606503.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
gi|297493193|ref|XP_002700192.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
gi|296470652|gb|DAA12767.1| cold shock domain protein A short-like [Bos taurus]
Length = 323
Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++ W+ KGYGFI+ + + +DVF+H +A+ ++ +G++V +D VQ +
Sbjct: 70 GTVVWFKEKKGYGFISRQDTQ---EDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGE 126
Query: 61 ANGKYSAENLK 71
A N+
Sbjct: 127 WG--TEAANVT 135
>gi|227202808|dbj|BAH56877.1| AT4G38680 [Arabidopsis thaliana]
Length = 204
Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
+GS+KW++ KG+GFITP+ GDD+F+H+S++ S G +L
Sbjct: 12 KGSVKWFDTQKGFGFITPDD---GGDDLFVHQSSIRSEGFRSL 51
>gi|227364737|ref|ZP_03848786.1| major cold shock protein [Lactobacillus reuteri MM2-3]
gi|227070196|gb|EEI08570.1| major cold shock protein [Lactobacillus reuteri MM2-3]
Length = 72
Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K ++ KG+GFIT ++F+H S + L + V+ VQ
Sbjct: 6 MLKGKVKSFDEQKGWGFITV----PHEGEIFVHYSGIEGTRRRILHPDEEVSLVIVQGQK 61
Query: 62 NGKYSAENLKLV 73
A +++++
Sbjct: 62 G--PQAAHVRVL 71
>gi|238063669|ref|ZP_04608378.1| DNA binding protein [Micromonospora sp. ATCC 39149]
gi|237885480|gb|EEP74308.1| DNA binding protein [Micromonospora sp. ATCC 39149]
Length = 150
Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI P+G GDDVF+H + V L G V Y+ V+N+
Sbjct: 1 MLTGRVVRFDEVRGYGFIAPDG---GGDDVFVHANTVDGDKWA-LGPGVPVEYEAVENER 56
Query: 62 NGKYSAENLKLVPKS 76
K A ++++ +
Sbjct: 57 GPK--ALTVRVLGPA 69
>gi|322368358|ref|ZP_08042927.1| cold shock protein [Haladaptatus paucihalophilus DX253]
gi|320552374|gb|EFW94019.1| cold shock protein [Haladaptatus paucihalophilus DX253]
Length = 64
Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI + +S +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MAKGTVDFFNDTGGYGFI---DTEDSDEDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A N++ +
Sbjct: 55 GPR--ATNVQRL 64
>gi|257386713|ref|YP_003176486.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
gi|257169020|gb|ACV46779.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
Length = 69
Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + DDVF H V G +L EGQ + +D Q D
Sbjct: 6 MATGTVDFFNDTGGYGFIETEDA---DDDVFFHMEDV---GGPDLEEGQEIEFDIEQADK 59
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 60 GPR--ATNVTRL 69
>gi|254293523|ref|YP_003059546.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
gi|254042054|gb|ACT58849.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
Length = 69
Score = 63.9 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K+YN ++G+G IT + DV SA+ G+ + E Q V ++ N
Sbjct: 1 MIHGTVKYYNSEQGFGLITRADNE---KDVRFTFSALKKLGITGIKERQKVKFETETNPD 57
Query: 62 NGKYSAENLKLV 73
GK A L+LV
Sbjct: 58 TGKVIAVTLELV 69
>gi|17298531|gb|AAL38166.1| putative cold shock protein [Bradyrhizobium japonicum]
Length = 56
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
G+GFITP+ DVF+H A+ + G +L EGQ V++ +A N+
Sbjct: 3 GFGFITPDD---GSKDVFVHFXAIQNDGYKSLDEGQKVSFTIESGAKG--PAAANVT 54
>gi|125526345|gb|EAY74459.1| hypothetical protein OsI_02348 [Oryza sativa Indica Group]
Length = 98
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K ++ G+ FITP+ +D+F+H+S++ G +L + ++ D +G
Sbjct: 7 KGMVKGFDATNGFSFITPDD---GSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSGD-DG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAVDVT 70
>gi|268590149|ref|ZP_06124370.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM
1131]
gi|291314424|gb|EFE54877.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM
1131]
Length = 71
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +KW++ +GYGFI+P GDDVF+ ++A+ + +L EGQ V + +N +
Sbjct: 6 HMGRVKWFDAKEGYGFISPFN---GGDDVFVTTKSIANKKIKSLFEGQNVEFSVTRNS-D 61
Query: 63 GKYSAENL 70
G +A+ +
Sbjct: 62 GITAADVI 69
>gi|147902682|ref|NP_001088341.1| cold shock domain containing C2, RNA binding [Xenopus laevis]
gi|54038112|gb|AAH84399.1| LOC495181 protein [Xenopus laevis]
Length = 152
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ KG+GFITPE G D+FLH S + + EG VTY N
Sbjct: 69 KGVCKCFSRSKGHGFITPED---GGPDIFLHISDIEGEYVP--MEGDEVTYKVCTIPPKN 123
Query: 63 GKYSAENLKLVPKSS 77
K+ A +K+ +
Sbjct: 124 EKHQAVEVKITHLAP 138
>gi|71064869|ref|YP_263596.1| guanine-specific ribonuclease [Psychrobacter arcticus 273-4]
gi|71037854|gb|AAZ18162.1| possible guanine-specific ribonuclease with a cold-shock
DNA-binding domain [Psychrobacter arcticus 273-4]
Length = 247
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IK +N DKGYGFI + + +DVF H +V A ++EGQ V ++ +ND
Sbjct: 1 MQSGKIKHWNSDKGYGFIDVDNQS---EDVFFHIKSVQMA--QPISEGQRVYFNSERNDK 55
Query: 62 NGKYSAENLK 71
N + A +
Sbjct: 56 N-QLRATEVT 64
>gi|194336044|ref|YP_002017838.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308521|gb|ACF43221.1| cold-shock DNA-binding domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 84
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
+ +KW++ KGYGF+ G+D+F+H SA+ S L + V ++ +
Sbjct: 1 MALSKVKWFDGKKGYGFLLNPD---GGEDIFVHFSAIQSEQSFKVLNQDAEVDFELDKTQ 57
Query: 61 ANGKYSAENLKLVP 74
A+N++ V
Sbjct: 58 KG--LQAKNVREVS 69
>gi|313126739|ref|YP_004037009.1| cold-shock DNA-binding protein family [Halogeometricum
borinquense DSM 11551]
gi|312293104|gb|ADQ67564.1| cold-shock DNA-binding protein family [Halogeometricum
borinquense DSM 11551]
Length = 64
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E S +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MAKGTVAFFNDTGGYGFIESEDS---DEDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A+NL+ +
Sbjct: 55 GPR--AKNLQRL 64
>gi|163753583|ref|ZP_02160706.1| cold shock protein, DNA-binding [Kordia algicida OT-1]
gi|161325797|gb|EDP97123.1| cold shock protein, DNA-binding [Kordia algicida OT-1]
Length = 64
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K++N DKG+GFIT + +G D+F+H S + L V+Y+ +
Sbjct: 2 TGTVKFFNEDKGFGFITNDD---TGKDIFVHVSNLNGL---VLNSDDRVSYEEEEGRKG- 54
Query: 64 KYSAENLKLVP 74
A ++++
Sbjct: 55 -MVATQVQIIE 64
>gi|316934326|ref|YP_004109308.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315602040|gb|ADU44575.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
DX-1]
Length = 231
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ
Sbjct: 67 GFIKWFDASKGYGFVVPDN---GWPDVLLHVTVLRRDGYQTAYEGARIVVECVQRAKG-- 121
Query: 65 YSAENLKLVPKSS 77
Y A + + +S+
Sbjct: 122 YQAFRVVSMDEST 134
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N +G+GF+T E D+F+H + G+ L GQ V +
Sbjct: 161 VKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKG--MM 215
Query: 67 AENLKL 72
A ++
Sbjct: 216 AAEIQP 221
>gi|114554895|ref|XP_513232.2| PREDICTED: protein lin-28 homolog A [Pan troglodytes]
Length = 209
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|55379017|ref|YP_136867.1| cold shock protein [Haloarcula marismortui ATCC 43049]
gi|55231742|gb|AAV47161.1| cold shock protein [Haloarcula marismortui ATCC 43049]
Length = 64
Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI + + +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MAEGTVDFFNDTGGYGFIETDDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|292654672|ref|YP_003534569.1| cold shock protein [Haloferax volcanii DS2]
gi|291371643|gb|ADE03870.1| cold shock protein [Haloferax volcanii DS2]
Length = 64
Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++N GYGFI+ + + DDVF H V G +L EGQ V +D Q
Sbjct: 1 MAKGKVDFFNDTGGYGFISTDDA---DDDVFFHMEDV---GGPDLEEGQEVEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|121601754|ref|YP_989122.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
KC583]
gi|120613931|gb|ABM44532.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
KC583]
Length = 179
Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G IKW++ KGYGF+TP+ D+ LH S + G EG V +
Sbjct: 15 TGIIKWFDSSKGYGFVTPD--FPKLPDILLHISVMQRDGFQTALEGAKVVCSVKKTKRGL 72
Query: 64 K 64
K
Sbjct: 73 K 73
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 106 ERAIVKWFNRDKGFGFLSR---GQGTEDIFIHMETLRRFGLTELRAGQVVIVRFGKGEKG 162
>gi|82654186|ref|NP_001026944.2| protein lin-28 homolog A [Gallus gallus]
gi|116248185|sp|Q45KJ5|LN28A_CHICK RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
gi|82622705|gb|AAZ38895.2| LIN28A [Gallus gallus]
Length = 202
Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ +S DVF+H+S + G +L EG+ V + + ++
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSS 95
Query: 61 AN 62
Sbjct: 96 KG 97
>gi|227509389|ref|ZP_03939438.1| possible cold-shock protein [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227512213|ref|ZP_03942262.1| possible cold-shock protein [Lactobacillus buchneri ATCC 11577]
gi|227084607|gb|EEI19919.1| possible cold-shock protein [Lactobacillus buchneri ATCC 11577]
gi|227191101|gb|EEI71168.1| possible cold-shock protein [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 93
Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K YN G+GFIT + GD++F ++A + G V+Y V+
Sbjct: 23 MLYGKVKTYNAKNGFGFITQD----QGDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQK 78
Query: 62 NGKYSAENLKLVPKSSN 78
A ++V ++
Sbjct: 79 G--PQAAKAQIVEEAGE 93
>gi|296277238|ref|ZP_06859745.1| cold shock protein [Staphylococcus aureus subsp. aureus MR1]
Length = 55
Score = 63.5 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+KG+GFI E G DVF+H S +AS G L EGQ VT++ + A N++
Sbjct: 1 EKGFGFIEQEN----GGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRGD--QAVNVQT 54
Query: 73 V 73
V
Sbjct: 55 V 55
>gi|126328607|ref|XP_001363469.1| PREDICTED: similar to RNA-binding protein LIN-28 [Monodelphis
domestica]
Length = 205
Score = 63.5 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 39 GICKWFNVRMGFGFLSMTARAGVALDQPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 98
Query: 61 AN 62
Sbjct: 99 KG 100
>gi|55378475|ref|YP_136325.1| cold shock protein [Haloarcula marismortui ATCC 43049]
gi|55231200|gb|AAV46619.1| cold shock protein [Haloarcula marismortui ATCC 43049]
Length = 64
Score = 63.5 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI + + +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MATGTVDFFNDTGGYGFIETDDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A+NL+ +
Sbjct: 55 GPR--AKNLERL 64
>gi|303289687|ref|XP_003064131.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
gi|226454447|gb|EEH51753.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
Length = 325
Score = 63.5 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
D+G+GFITP+G G+DVF H SA+ + L+EG V YD +D GK AEN+
Sbjct: 83 NDRGFGFITPDG---GGEDVFCHFSAIKDGNM--LSEGSRVDYDESFDDRKGKPRAENVT 137
>gi|332667975|ref|YP_004450763.1| cold-shock DNA-binding domain-containing protein
[Haliscomenobacter hydrossis DSM 1100]
gi|332336789|gb|AEE53890.1| cold-shock DNA-binding domain protein [Haliscomenobacter
hydrossis DSM 1100]
Length = 80
Score = 63.5 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+H G++K++N KG+GFI S ++ F+H + + + + EG VT++
Sbjct: 18 MHTGTVKFFNESKGFGFIV---DNSSNEEFFVHVTGL----VDKIREGDSVTFNVENGRK 70
Query: 62 NGKYSAENLKL 72
+A +KL
Sbjct: 71 G--MNAVEVKL 79
>gi|15789425|ref|NP_279249.1| cold shock protein [Halobacterium sp. NRC-1]
gi|10579749|gb|AAG18729.1| cold shock protein [Halobacterium sp. NRC-1]
Length = 74
Score = 63.5 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI E + +DVF H V G +L EGQ V +D Q D
Sbjct: 11 MATGEVDFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 64
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 65 GPR--ATNLTRL 74
>gi|148645032|gb|ABR01046.1| Csp [uncultured Geobacter sp.]
Length = 56
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N KG+GF+ E GDDVF H SA+ G +L EG V ++ + A N
Sbjct: 1 FNDGKGFGFLEQEN----GDDVFCHFSAITGDGFKSLAEGDKVKFEVTKGPKG--LQAAN 54
Query: 70 L 70
+
Sbjct: 55 V 55
>gi|319783223|ref|YP_004142699.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169111|gb|ADV12649.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 198
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KGYGFI P+ D+ LH + + G EG V +
Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVCLVKHGERG-- 89
Query: 65 YSAENL 70
A +
Sbjct: 90 LQAFRV 95
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G +
Sbjct: 129 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGVTELRPGQVVLVRFGRGDK-GLMA 184
Query: 67 AE 68
AE
Sbjct: 185 AE 186
>gi|3821921|gb|AAC69702.1| major cold shock protein [Lactobacillus acidophilus]
Length = 50
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G DVF+H SA+ G +L EGQ V+YD Q+D A N
Sbjct: 1 KGFGFITGED----GQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRG--PQAAN 50
>gi|319898944|ref|YP_004159037.1| cold shock protein [Bartonella clarridgeiae 73]
gi|319402908|emb|CBI76459.1| cold shock protein [Bartonella clarridgeiae 73]
Length = 193
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ S D+ LH + + G EG V Q + K
Sbjct: 30 GVIKWFDGSKGYGFIVPDFSDL--PDILLHVTVMRRDGFQTALEGAKVVCVVKQTERGLK 87
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 120 ERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGEKG 176
>gi|42521032|ref|NP_966947.1| cold-shock domain-contain protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58698415|ref|ZP_00373326.1| cold-shock domain family protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630894|ref|YP_002727685.1| cold-shock domain family protein [Wolbachia sp. wRi]
gi|225677316|ref|ZP_03788293.1| cold-shock domain family protein [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|42410773|gb|AAS14881.1| cold-shock domain family protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58535070|gb|EAL59158.1| cold-shock domain family protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225590643|gb|EEH11893.1| cold-shock domain family protein [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225592875|gb|ACN95894.1| cold-shock domain family protein [Wolbachia sp. wRi]
Length = 83
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 16/84 (19%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LT--------EGQL 51
+ G++KW+N +KGYGFI PEG G DVF+H S + +G+ L +G+
Sbjct: 1 MEFGNVKWFNAEKGYGFIKPEG---KGGDVFVHISTLERSGIRPEALKGENKEKGIKGER 57
Query: 52 VTYDY-VQNDANG--KYSAENLKL 72
V+Y+ + NG K SA NL+L
Sbjct: 58 VSYEVKEERGRNGEDKKSAINLRL 81
>gi|321477873|gb|EFX88831.1| hypothetical protein DAPPUDRAFT_311200 [Daphnia pulex]
Length = 322
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
G +KW+N GYGFI + +D+F+H++A++ + ++ +G++V +D V
Sbjct: 25 TGVVKWFNVKSGYGFINRNDTK---EDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVVVG 81
Query: 60 DANGKYSAENLK 71
+ + A N+
Sbjct: 82 EKG--HEAANVT 91
>gi|3821911|gb|AAC69697.1| major cold shock protein [Lactococcus lactis subsp. lactis]
Length = 50
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G+DVF H SA+ + G L EGQ VT+D + A N
Sbjct: 1 KGFGFITTE----EGNDVFAHFSAIQTDGFKTLDEGQKVTFDVEEGPRG--PQAAN 50
>gi|300710595|ref|YP_003736409.1| cold shock protein [Halalkalicoccus jeotgali B3]
gi|299124278|gb|ADJ14617.1| cold shock protein [Halalkalicoccus jeotgali B3]
Length = 64
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E S +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MAKGTVDFFNDTGGYGFIDSEDSE---EDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A NL+ +
Sbjct: 55 GPR--AVNLERL 64
>gi|295136384|ref|YP_003587060.1| cold shock protein [Zunongwangia profunda SM-A87]
gi|294984399|gb|ADF54864.1| cold shock protein [Zunongwangia profunda SM-A87]
Length = 64
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KGYGFIT + +G D+F+H + + L EG V Y V+ +
Sbjct: 3 GTVKFFNESKGYGFITNDD---TGRDIFVHVTGIDGE---TLNEGDKVEY--VEKEGRKG 54
Query: 65 YSAENLKLV 73
+A+ ++++
Sbjct: 55 LNADQVRVI 63
>gi|315506605|ref|YP_004085492.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|315413224|gb|ADU11341.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
Length = 165
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI P+ DDVF+H + + LT G V YD V+ +
Sbjct: 7 MLTGKVVRFDEVRGYGFIAPDD---GSDDVFVHANMLDGDKWA-LTPGVPVEYDAVETER 62
Query: 62 NGKYSAENLKLVPKSSN 78
K + V ++
Sbjct: 63 GPKAVLVRVSGVAPGAD 79
>gi|156537640|ref|XP_001607820.1| PREDICTED: similar to Y-box protein Ct-p40 [Nasonia vitripennis]
Length = 335
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW+N GYGFI S + S + ++ +G++V +D V +
Sbjct: 70 TGTVKWFNVKSGYGFINRSVFHFDIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGEKG 129
Query: 63 GKYSAENLK 71
+ A N+
Sbjct: 130 NE--AANVT 136
>gi|257454036|ref|ZP_05619310.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
gi|257448514|gb|EEV23483.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
SK60]
Length = 213
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G I + DKG+GFI + +F H S + L E V ++ Q +
Sbjct: 4 YQGKIIRWQDDKGFGFIEQTDNNWQDPAIFFHISEYRANQRPVLNE--AVVFEIGQG-RD 60
Query: 63 GKYSAENLK 71
GK A N++
Sbjct: 61 GKPCAVNVQ 69
>gi|212709797|ref|ZP_03317925.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens
DSM 30120]
gi|212687608|gb|EEB47136.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens
DSM 30120]
Length = 71
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +KW++ +GYGFI+P GDD+F+ ++A+ + +L EGQ V + +N
Sbjct: 6 HMGRVKWFDAKEGYGFISPRN---GGDDIFVTTKSLANKKIKSLFEGQNVEFSVTRNSDG 62
>gi|332292095|ref|YP_004430704.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332170181|gb|AEE19436.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 63
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KGYGFIT + +G D+F+H + + + EG V Y V+ +
Sbjct: 3 GTVKFFNESKGYGFITNDD---TGKDIFVHVTGLNGE---TINEGDKVEY--VEEEGRKG 54
Query: 65 YSAENLKLV 73
+A ++++
Sbjct: 55 LTAAQVRVL 63
>gi|284007581|emb|CBA73141.1| cold shock protein [Arsenophonus nasoniae]
Length = 80
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +GYGFI+P G D++++R A+A+ L EGQ V + +N
Sbjct: 15 GRVKWFDVKEGYGFISPVN---GGQDIYVNRRAIANTKNKWLKEGQCVEFSITRNAYG-- 69
Query: 65 YSAENL 70
+A ++
Sbjct: 70 IAAADV 75
>gi|301755044|ref|XP_002913351.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca]
gi|281351598|gb|EFB27182.1| hypothetical protein PANDA_001150 [Ailuropoda melanoleuca]
Length = 206
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ G DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97
Query: 61 AN 62
Sbjct: 98 KG 99
>gi|291045286|ref|NP_001166916.1| protein lin-28 homolog A [Felis catus]
gi|73950555|ref|XP_854985.1| PREDICTED: similar to RNA-binding protein LIN-28 [Canis
familiaris]
gi|264670123|gb|ACY72346.1| lin-28-like protein [Felis catus]
Length = 206
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ G DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97
Query: 61 AN 62
Sbjct: 98 KG 99
>gi|302866957|ref|YP_003835594.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|302569816|gb|ADL46018.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
Length = 165
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI P+ DDVF+H + + LT G V YD V+ +
Sbjct: 7 MLTGKVVRFDEVRGYGFIAPDD---GSDDVFVHANMLDGDKWA-LTPGVPVEYDAVETER 62
Query: 62 NGKYSAENLKLVPKSSN 78
K + V ++
Sbjct: 63 GPKAVLVRVSGVAPGAD 79
>gi|86130406|ref|ZP_01049006.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
gi|85819081|gb|EAQ40240.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
Length = 82
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ G +K++N KG+GFI + S ++VF+H + V L E VT++ +
Sbjct: 17 IRKEGKVKFFNTKKGFGFIAIDNS---DEEVFVHTTNVTG----RLRENDKVTFEVEDGE 69
Query: 61 ANGKYSAENLKLVPK 75
SA N+K V K
Sbjct: 70 KG--PSAVNVKRVKK 82
>gi|327482221|gb|AEA85531.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri DSM 4166]
Length = 235
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M RG++K +N DKG+GFI PE + G+++F+H SAV G V + D
Sbjct: 1 MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAVHGE--RRPLVGDRVLF-VAGRD 54
Query: 61 ANGKYSAENLKL 72
A G+ AE+++L
Sbjct: 55 AQGRLRAEHVRL 66
>gi|312892429|ref|ZP_07751924.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
DSM 18603]
gi|311295213|gb|EFQ72387.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
DSM 18603]
Length = 65
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K++N KG+GFI P ++VF+H S + + + E V Y +
Sbjct: 1 MQKEGTVKFFNETKGFGFIIPAD---GSEEVFVHSSGL----IDQIRENDKVEYGVERGK 53
Query: 61 ANGKYSAENLKLVP 74
+A N+K++
Sbjct: 54 KG--MNAVNVKVIS 65
>gi|163746554|ref|ZP_02153912.1| cold shock protein [Oceanibulbus indolifex HEL-45]
gi|161380439|gb|EDQ04850.1| cold shock protein [Oceanibulbus indolifex HEL-45]
Length = 186
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ + G DV LH + + + G ++ +G +T Q D
Sbjct: 25 GVVKWFDPVKGFGFVVAD---AGGSDVLLHVNVLRNFGQSSIADGARITIRVQQTDRG-- 79
Query: 65 YSAENLKLVPK 75
A + +
Sbjct: 80 AQAVEVLFIEP 90
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVFLH + +GL +L G+ + + D G
Sbjct: 118 RVKWFDKAKGFGFANVFGR---AEDVFLHIDVLRQSGLCDLQPGEALAMRVIVGDR-GHL 173
Query: 66 SAEN 69
+AE
Sbjct: 174 AAEV 177
>gi|222480397|ref|YP_002566634.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222453299|gb|ACM57564.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 64
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++N GYGFI + + +DVF H V G +L EGQ V +D + +
Sbjct: 1 MAKGKVDFFNDTGGYGFIESDDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEEAEK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|301620236|ref|XP_002939487.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
[Xenopus (Silurana) tropicalis]
gi|301620238|ref|XP_002939488.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
[Xenopus (Silurana) tropicalis]
gi|301620240|ref|XP_002939489.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4
[Xenopus (Silurana) tropicalis]
gi|301620242|ref|XP_002939490.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5
[Xenopus (Silurana) tropicalis]
Length = 153
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDA 61
++G K ++ KG+GFITP G D+FLH S + + EG VTY
Sbjct: 69 YKGVCKCFSRSKGHGFITPVD---GGPDIFLHISDIEGEYVP--AEGDEVTYKVCTVPPK 123
Query: 62 NGKYSAENLKLVPKSS 77
N K+ A +K+ +
Sbjct: 124 NEKHQAVEVKITHLAP 139
>gi|301620234|ref|XP_002939486.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 214
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDA 61
++G K ++ KG+GFITP G D+FLH S + + EG VTY
Sbjct: 130 YKGVCKCFSRSKGHGFITPVD---GGPDIFLHISDIEGEYVP--AEGDEVTYKVCTVPPK 184
Query: 62 NGKYSAENLKLVPKSS 77
N K+ A +K+ +
Sbjct: 185 NEKHQAVEVKITHLAP 200
>gi|159044337|ref|YP_001533131.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
gi|157912097|gb|ABV93530.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
Length = 173
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ KG+GF+ G+ +D+F+H + G +L G+ V +++
Sbjct: 100 MVPGRVKWFDKVKGFGFLNVFGA---DEDIFVHMDVLRRCGFSDLQAGEAVAVRIGESER 156
Query: 62 N 62
Sbjct: 157 G 157
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++KW++P KG+GF+ G D+ LH + + + G ++ +G + +
Sbjct: 13 GTVKWFDPKKGFGFVV---GEADGPDILLHANVLRNFGQSSVADGSQIQIRVQETPRG-- 67
Query: 65 YSAENLKLV 73
A + +
Sbjct: 68 IQAVEVVAI 76
>gi|56697005|ref|YP_167367.1| cold shock DNA-binding domain-containing protein [Ruegeria
pomeroyi DSS-3]
gi|56678742|gb|AAV95408.1| cold shock DNA-binding domain protein [Ruegeria pomeroyi DSS-3]
Length = 175
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KGYGF+ E E G D+ LH + + + G ++ +G + + D G
Sbjct: 12 RGRVKWFDPTKGYGFVVAE---EGGPDILLHVNVLRNFGQSSVADGAAIEIMTHRTDR-G 67
Query: 64 KYSAENLKLVPKS 76
+ E + +VP
Sbjct: 68 VQAVEVVSIVPPE 80
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF GS+ +DVFLH + +GL +L G+ + + + G+
Sbjct: 107 RVKWFDKGKGFGFANVFGSS---EDVFLHIEVLRQSGLSDLQPGEALAMRVI-DGKRGRM 162
Query: 66 SAENL 70
+AE L
Sbjct: 163 AAEVL 167
>gi|55379016|ref|YP_136866.1| cold shock protein [Haloarcula marismortui ATCC 43049]
gi|55231741|gb|AAV47160.1| cold shock protein [Haloarcula marismortui ATCC 43049]
Length = 64
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI + ++ +DVF H + G +L EGQ + +D Q D
Sbjct: 1 MAKGTVDFFNDTGGYGFI---DTEDADEDVFFHMEDI---GGPDLEEGQELEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ANNVTRL 64
>gi|3831556|gb|AAC69999.1| major cold shock protein [Enterococcus faecalis]
Length = 50
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFI+PE G+DVF+H SA+ G L EGQ VT+D A N
Sbjct: 1 KGFGFISPED----GNDVFVHFSAIQGDGFKTLEEGQAVTFDVEDGHRG--PQAAN 50
>gi|240850648|ref|YP_002972048.1| cold shock protein [Bartonella grahamii as4aup]
gi|240267771|gb|ACS51359.1| cold shock protein [Bartonella grahamii as4aup]
Length = 191
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ D+ LH + + G EG V + +
Sbjct: 28 GVIKWFDGSKGYGFIVPDLPHF--PDILLHVTVMRRDGFQTALEGAKVICAVEKTERG-- 83
Query: 65 YSAENLKLVPKSS 77
+K + SS
Sbjct: 84 LKCVQVKSIDCSS 96
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N DKGYGF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 118 ERAIVKWFNRDKGYGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGEKG 174
>gi|149695055|ref|XP_001504139.1| PREDICTED: RNA-binding protein LIN-28 [Equus caballus]
Length = 205
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ G DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97
Query: 61 AN 62
Sbjct: 98 KG 99
>gi|23502142|ref|NP_698269.1| cold-shock family protein [Brucella suis 1330]
gi|161619217|ref|YP_001593104.1| cold shock-like protein cspG [Brucella canis ATCC 23365]
gi|163843529|ref|YP_001627933.1| cold shock-like protein cspG [Brucella suis ATCC 23445]
gi|254704543|ref|ZP_05166371.1| cold shock-like protein cspG [Brucella suis bv. 3 str. 686]
gi|260566213|ref|ZP_05836683.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 4 str. 40]
gi|261755227|ref|ZP_05998936.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 3 str. 686]
gi|23348105|gb|AAN30184.1| cold-shock family protein [Brucella suis 1330]
gi|161336028|gb|ABX62333.1| Cold shock-like protein cspG [Brucella canis ATCC 23365]
gi|163674252|gb|ABY38363.1| Cold shock-like protein cspG [Brucella suis ATCC 23445]
gi|260155731|gb|EEW90811.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 4 str. 40]
gi|261744980|gb|EEY32906.1| cold-shock DNA-binding domain-containing protein [Brucella suis
bv. 3 str. 686]
Length = 193
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI P+ D+ LH +++ EG + + D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDEFQTALEGARIVCEVRHGDRG 83
Score = 60.4 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 122 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 177
Query: 66 SAE 68
+AE
Sbjct: 178 AAE 180
>gi|213966424|ref|ZP_03394602.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum
SK46]
gi|213950944|gb|EEB62348.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum
SK46]
Length = 143
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++WY+ D+G+GF+ S G+DV++ ++ + G+ L GQ + YDY
Sbjct: 1 MPIGKVRWYDKDRGFGFV----SNPDGEDVYIGKNVLPK-GVEELVTGQRLEYDYADGRP 55
Query: 62 NGKYSAENLKLVPK 75
A +K++ +
Sbjct: 56 G--PQALRIKVLDE 67
>gi|325104808|ref|YP_004274462.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
12145]
gi|324973656|gb|ADY52640.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
12145]
Length = 63
Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFI G + + F+H S + + ++E VT+D +
Sbjct: 1 MNNGTVKFFNATKGFGFIKENG---TDKEYFVHVSGL----IDEISENDQVTFDLKEGRK 53
Query: 62 NGKYSAENLKL 72
+A N+KL
Sbjct: 54 G--LNAVNVKL 62
>gi|320007562|gb|ADW02412.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 70
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++ ++ +KGYG+I P + G ++ +H SA+ A L GQ V++D VQ
Sbjct: 1 MAEGTVQVFSAEKGYGYIRP---STGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQRRR 57
Query: 62 NGKYSAENLKL 72
AE +++
Sbjct: 58 G--PEAERVQI 66
>gi|241813115|ref|XP_002414626.1| Y1 protein, putative [Ixodes scapularis]
gi|215508837|gb|EEC18291.1| Y1 protein, putative [Ixodes scapularis]
Length = 209
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G+++W+N GYGFI + +D+F+H++A+ ++EG+ V +D V ++
Sbjct: 27 GTVQWFNVKNGYGFINRNDTR---EDIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDE 83
Query: 61 ANGK 64
+
Sbjct: 84 ERAR 87
>gi|86138853|ref|ZP_01057425.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193]
gi|85824500|gb|EAQ44703.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193]
Length = 180
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KG+GF+ + G D+ LH + + + G ++ +G + + D
Sbjct: 12 QGLVKWFDPTKGFGFVVSD---LGGPDILLHVNVLRNFGQSSVADGTRIEIVTHRTDRG- 67
Query: 64 KYSAENL 70
A +
Sbjct: 68 -VQAVEV 73
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF +DVFLH + +GL +L G+ + + + G+
Sbjct: 107 RVKWFNKGKGFGF---ANIFGRSEDVFLHVEVLRQSGLADLQPGEALAPRVI-DGKRGQM 162
Query: 66 SAEN 69
+AE
Sbjct: 163 AAEV 166
>gi|86141013|ref|ZP_01059572.1| cold shock protein [Leeuwenhoekiella blandensis MED217]
gi|85832955|gb|EAQ51404.1| cold shock protein [Leeuwenhoekiella blandensis MED217]
Length = 63
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KGYGFIT + +G D+F+H + + L EG V Y ++ +
Sbjct: 2 KGTVKFFNESKGYGFITNDD---TGKDIFVHATGLNGE---VLEEGDQVEY--IEEEGRK 53
Query: 64 KYSAENLKLV 73
A ++++
Sbjct: 54 GMVAAQVRVL 63
>gi|329850706|ref|ZP_08265551.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
gi|328841021|gb|EGF90592.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
C19]
Length = 187
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI P+ +T S DV LH S++ G + EG +T +
Sbjct: 20 GHVKWFDAAKGYGFIVPQDATLTSTRDVLLHISSLRDLGRDSAHEGAKITCKIAKRSKG- 78
Query: 64 KYSAENLKLVPKSSN 78
+ + + +++
Sbjct: 79 -WQVIEIDHLDQAAE 92
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+IKW+N KGYGF+ D+F+H + GL ++ +G + + +
Sbjct: 122 TIKWFNRTKGYGFVVRGNDPT---DIFIHIETLRRYGLEDVQQGDTIMVRFGEGPKG 175
>gi|110638737|ref|YP_678946.1| cold-shock DNA-binding protein family protein [Cytophaga
hutchinsonii ATCC 33406]
gi|110281418|gb|ABG59604.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii
ATCC 33406]
Length = 63
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFI ESG + F+H S + + + E VT++ +
Sbjct: 1 MNNGTVKFFNNSKGFGFII---EKESGKEYFVHVSGL----VDEIRENDEVTFELEKGKK 53
Query: 62 NGKYSAENLKLV 73
+A N+KLV
Sbjct: 54 G--LNAVNVKLV 63
>gi|291399525|ref|XP_002716148.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
gi|291409216|ref|XP_002720890.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
Length = 209
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|157369959|ref|YP_001477948.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|157321723|gb|ABV40820.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
Length = 73
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ GYGFI+P D++++ R ++A+ +L EGQ V + ++
Sbjct: 10 GRVKWFDQAAGYGFISPVD---GSDEIYVSRRSIANTKNKSLNEGQNVEFSIYRSSHG-- 64
Query: 65 YSAENL 70
SA ++
Sbjct: 65 LSAADV 70
>gi|126737875|ref|ZP_01753605.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
gi|126721268|gb|EBA17972.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
Length = 178
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KGYGF+ + G D+ LH + + + G ++ +G + D
Sbjct: 12 QGLVKWFDPAKGYGFVVSDS---GGPDILLHVNVLRNFGQSSVADGTRIEVVTHNTDRG- 67
Query: 64 KYSAENL-KLVPKSSN 78
A + ++P +
Sbjct: 68 -VQAVEILSILPPERD 82
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF G DVFLH + +GL +L G+ + + + G+
Sbjct: 107 RVKWFNKGKGFGFANVFGRDA---DVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGQM 162
Query: 66 SAEN 69
+AE
Sbjct: 163 AAEV 166
>gi|296207133|ref|XP_002750510.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
Length = 209
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|159037812|ref|YP_001537065.1| cold-shock DNA-binding domain-containing protein [Salinispora
arenicola CNS-205]
gi|157916647|gb|ABV98074.1| cold-shock DNA-binding domain protein [Salinispora arenicola
CNS-205]
Length = 138
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G+I ++ +GYGFI P G GDDVF+H + + G V+Y+ VQ++
Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSER 56
Query: 62 NGKYSAENLKLVPKSS 77
K ++ L+ P S
Sbjct: 57 GLKVASVVLESAPASG 72
>gi|284041216|ref|YP_003391146.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
gi|283820509|gb|ADB42347.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
Length = 68
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KGYGFI + + D+F+H + + + E V ++ V
Sbjct: 1 MQTGVVKFFNESKGYGFIVEDD---TNRDIFVHITGLNGI---TIREKDRVQFEVVDGKK 54
Query: 62 NGKYSAENLKLVPK 75
+A +K +
Sbjct: 55 G--LNAVKVKKIDS 66
>gi|302392639|ref|YP_003828459.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
gi|302204716|gb|ADL13394.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
Length = 66
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ +KGYGFI DDVF+H SA+ G +L EG+ V ++ V+ D
Sbjct: 1 MATGTVKWFDSNKGYGFIER----PEEDDVFVHFSAIQDDGFKDLEEGEEVEFEVVEGDK 56
Query: 62 NGKYSAENLKLV 73
AEN+ +
Sbjct: 57 G--LQAENVVKL 66
>gi|15234010|ref|NP_195580.1| GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA
binding / nucleic acid binding / single-stranded DNA
binding [Arabidopsis thaliana]
gi|13430580|gb|AAK25912.1|AF360202_1 putative glycine-rich protein GRP2 [Arabidopsis thaliana]
gi|14326487|gb|AAK60289.1|AF385696_1 AT4g38680/F20M13_240 [Arabidopsis thaliana]
gi|259445|gb|AAB24074.1| glycine-rich protein [Arabidopsis thaliana]
gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
gi|7270851|emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
gi|14532850|gb|AAK64107.1| putative glycine-rich protein 2 [Arabidopsis thaliana]
gi|22137152|gb|AAM91421.1| AT4g38680/F20M13_240 [Arabidopsis thaliana]
gi|332661564|gb|AEE86964.1| glycine rich protein 2 [Arabidopsis thaliana]
Length = 203
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
+GS+KW++ KG+GFITP+ GDD+F+H+S++ S G +L
Sbjct: 12 KGSVKWFDTQKGFGFITPDD---GGDDLFVHQSSIRSEGFRSL 51
>gi|178056460|ref|NP_001116605.1| protein lin-28 homolog A [Sus scrofa]
gi|169627101|gb|ACA58282.1| LIN28 [Sus scrofa]
Length = 205
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97
Query: 61 AN 62
Sbjct: 98 KG 99
>gi|254294221|ref|YP_003060244.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
gi|254042752|gb|ACT59547.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
49814]
Length = 166
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GFI P+ G + LH S + G+ + EG L++ D V+ +
Sbjct: 20 GRVKWFDSVKGFGFIIPDDG-LDGQEALLHISILREFGVEQVVEGMLISCDVVKRERG-- 76
Query: 65 YSAENLKLVPKS 76
Y +K +
Sbjct: 77 YQVTEVKSLEGG 88
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
IKW+N KGYGF+ G +D+FLH + AGL GQ V +
Sbjct: 104 IKWFNRTKGYGFVHRVGEV---EDIFLHMVTLRKAGLEEAEPGQKVWVTIGKGPKG 156
>gi|13375938|ref|NP_078950.1| protein lin-28 homolog A [Homo sapiens]
gi|74752750|sp|Q9H9Z2|LN28A_HUMAN RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
Full=Zinc finger CCHC domain-containing protein 1
gi|21842304|gb|AAM77751.1|AF521099_1 RNA-binding protein LIN-28 [Homo sapiens]
gi|10433955|dbj|BAB14075.1| unnamed protein product [Homo sapiens]
gi|20306208|gb|AAH28566.1| LIN28 protein [Homo sapiens]
gi|56206248|emb|CAI21500.1| lin-28 homolog (C. elegans) [Homo sapiens]
gi|119628219|gb|EAX07814.1| lin-28 homolog (C. elegans), isoform CRA_a [Homo sapiens]
gi|123993445|gb|ABM84324.1| lin-28 homolog (C. elegans) [synthetic construct]
gi|124000419|gb|ABM87718.1| lin-28 homolog (C. elegans) [synthetic construct]
gi|261860154|dbj|BAI46599.1| lin-28 homolog [synthetic construct]
Length = 209
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|300796242|ref|NP_001179986.1| protein lin-28 homolog A [Bos taurus]
gi|297472202|ref|XP_002685742.1| PREDICTED: lin-28 homolog [Bos taurus]
gi|296490058|gb|DAA32171.1| lin-28 homolog [Bos taurus]
Length = 205
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97
Query: 61 AN 62
Sbjct: 98 KG 99
>gi|289580237|ref|YP_003478703.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
gi|289529790|gb|ADD04141.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
Length = 64
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E + DDVF H V G +L EGQ + +D Q D
Sbjct: 1 MAKGTVDFFNDTGGYGFIETEDA---DDDVFFHMEDV---GGPDLEEGQELEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|284163596|ref|YP_003401875.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284013251|gb|ADB59202.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 64
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E + +DVF H + G +L EGQ + +D Q
Sbjct: 1 MAKGTVDFFNDTGGYGFIETEDA---DEDVFFHMEDI---GGPDLEEGQELEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N++ +
Sbjct: 55 GPR--ATNVERL 64
>gi|300676082|gb|ADK26463.1| lin-28 [Sus scrofa]
Length = 205
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ G DV +H+S + G +L EG+ V + + ++
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVLVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97
Query: 61 AN 62
Sbjct: 98 KG 99
>gi|297665898|ref|XP_002811262.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
Length = 209
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|255263765|ref|ZP_05343107.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62]
gi|255106100|gb|EET48774.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62]
Length = 166
Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KG+GF+ + G D+ LH + + + G ++ +G + + + G
Sbjct: 2 RGLVKWFDPSKGFGFVVADD---GGPDILLHANVLRNFGQSSVADGSAIELSVIDTER-G 57
Query: 64 KYSAENLKLVPKS 76
+AE + + P
Sbjct: 58 IQAAEIITITPPE 70
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + DD+F+H + +GL +L G+ + V + G+
Sbjct: 97 RVKWFDKSKGFGFANVFGVS---DDIFIHVEVLRRSGLADLQYGEAIGVRVV-DGKRGRM 152
Query: 66 SAEN 69
+A+
Sbjct: 153 AAQV 156
>gi|227524055|ref|ZP_03954104.1| hypothetical protein HMPREF0519_1764 [Lactobacillus hilgardii
ATCC 8290]
gi|227088794|gb|EEI24106.1| hypothetical protein HMPREF0519_1764 [Lactobacillus hilgardii
ATCC 8290]
Length = 78
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K YN G+GFIT + GD++F ++A + G V+Y V+
Sbjct: 8 MLYGKVKTYNAKNGFGFITQD----QGDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQK 63
Query: 62 NGKYSAENLKLVPKSSN 78
A ++V ++
Sbjct: 64 G--PQAAKAQIVEEAGE 78
>gi|125570752|gb|EAZ12267.1| hypothetical protein OsJ_02155 [Oryza sativa Japonica Group]
Length = 98
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K ++ G+ FITP+ +D+F+H+S++ G +L + ++ +D +G
Sbjct: 7 KGMVKGFDATNGFSFITPDD---GSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSD-DG 62
Query: 64 KYSAENLK 71
+ A ++
Sbjct: 63 RTKAVDVT 70
>gi|296208902|ref|XP_002751304.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
Length = 208
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDD----VFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ D VF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARARVALDPPVNVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|292654673|ref|YP_003534570.1| cold shock protein [Haloferax volcanii DS2]
gi|17148925|gb|AAL35837.1|AF442116_1 conditioned medium-induced protein 9 [Haloferax volcanii]
gi|291371479|gb|ADE03706.1| cold shock protein [Haloferax volcanii DS2]
Length = 64
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++N GYGFI+ + + DDVF H V G +L EGQ + +D Q
Sbjct: 1 MAKGKVDFFNDTGGYGFISTDDA---DDDVFFHMEDV---GGPDLEEGQEIEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|242022944|ref|XP_002431897.1| calcium-regulated heat stable protein, putative [Pediculus humanus
corporis]
gi|212517238|gb|EEB19159.1| calcium-regulated heat stable protein, putative [Pediculus humanus
corporis]
Length = 132
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++K + +KG+GFIT S +G+D+F+H S + + G V Y
Sbjct: 48 EKGTVKMFCREKGHGFIT---SNRTGEDIFVHISDIEGEYVP--LPGDEVEYRLCPIPPK 102
Query: 63 -GKYSAENLKLVPKSSN 78
K A ++ ++ +
Sbjct: 103 FEKTQAVHVNIIHLTPE 119
>gi|332245102|ref|XP_003271702.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys]
Length = 209
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|319953293|ref|YP_004164560.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
gi|319421953|gb|ADV49062.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
Length = 64
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++K+YN KGYGFIT + +G D+F+H +++ A L EG V Y+ +
Sbjct: 2 TGTVKFYNGSKGYGFITNDN---TGKDIFVHATSLNGA---ELNEGDQVEYEEEDGEKG- 54
Query: 64 KYSAENLKLV 73
A ++++
Sbjct: 55 -IVAAQVQVI 63
>gi|300119946|gb|ADJ67998.1| Y-box protein [Samia ricini]
Length = 264
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ + ++ +G+ V + V +
Sbjct: 39 GTVKWFNVKSGYGFINRNDTK---EDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 95
Query: 61 ANGKYSAENLK 71
Y A +
Sbjct: 96 KG--YEAARVT 104
>gi|42518906|ref|NP_964836.1| cold shock protein [Lactobacillus johnsonii NCC 533]
gi|227889765|ref|ZP_04007570.1| cold-shock protein [Lactobacillus johnsonii ATCC 33200]
gi|268319696|ref|YP_003293352.1| Cold shock protein B [Lactobacillus johnsonii FI9785]
gi|41583192|gb|AAS08802.1| cold shock protein [Lactobacillus johnsonii NCC 533]
gi|227849629|gb|EEJ59715.1| cold-shock protein [Lactobacillus johnsonii ATCC 33200]
gi|262398071|emb|CAX67085.1| Cold shock protein B [Lactobacillus johnsonii FI9785]
gi|329667548|gb|AEB93496.1| cold shock protein [Lactobacillus johnsonii DPC 6026]
Length = 69
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K ++P+ YGFI + + S F+ ++ G L GQ V Y Q
Sbjct: 1 MRKGTVKQFDPNSAYGFIEDDLTHSS---YFVFYKSIKEEGYKKLNVGQRVRYQLAQGKK 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|114570048|ref|YP_756728.1| cold-shock DNA-binding protein family protein [Maricaulis maris
MCS10]
gi|114340510|gb|ABI65790.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
Length = 174
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ +GYGF+T + DVFLH + + AG ++ G + V+
Sbjct: 109 VVKWFDALRGYGFVTCDNVEG---DVFLHAATLRRAGFEDIQPGDRIEVRCVEGPKG--A 163
Query: 66 SAENLKLVPKS 76
A +K+ ++
Sbjct: 164 LAAEIKVAGQA 174
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+P +GYGFI +++ D+ LH S + G + VQ D
Sbjct: 18 GRVKWYDPARGYGFI---DASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQGDKG-- 72
Query: 65 YSAENL 70
A L
Sbjct: 73 RQAVEL 78
>gi|110598176|ref|ZP_01386453.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
gi|110340190|gb|EAT58688.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
13031]
Length = 72
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
+ + +KW++ KGYGFI G+D+F+H S + S L + V ++ +D
Sbjct: 1 MAKSVVKWFDGKKGYGFIVNPD---GGEDIFVHYSTIDSVHRFKFLNQDAEVDFEL--DD 55
Query: 61 ANGKYSAENLKLVPKSS 77
+ + A +K + +S
Sbjct: 56 SKQRLQARYVKEISIAS 72
>gi|46329818|gb|AAH68304.1| Lin-28 homolog (C. elegans) [Mus musculus]
Length = 209
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|319405712|emb|CBI79335.1| cold shock protein [Bartonella sp. AR 15-3]
Length = 191
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ D+ LH + + G EG V Q + K
Sbjct: 28 GVIKWFDGSKGYGFIIPD--FPGLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 85
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + +
Sbjct: 118 ERAIVKWFNREKGFGFLSR---GQGTEDIFIHMEILRRFGLAELRSGQVVLVRFGKGKKG 174
>gi|190571462|ref|YP_001975820.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018865|ref|ZP_03334673.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357734|emb|CAQ55185.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995816|gb|EEB56456.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 83
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 16/84 (19%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51
+ G+IKW+N +KGYGFI PEG G+DVF+H S + +G+ L +G+
Sbjct: 1 MEFGNIKWFNVEKGYGFIKPEG---KGEDVFVHVSTLERSGIRPDELRGEDKKRGMKGER 57
Query: 52 VTYDY-VQNDANG--KYSAENLKL 72
V+Y+ + NG K SA NL+L
Sbjct: 58 VSYELKEERGRNGEDKKSAINLRL 81
>gi|332261688|ref|XP_003279897.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys]
Length = 208
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF I G DVF+H+S + G ++L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMIARAGVALDPPVDVFVHQSKLHMEGFWSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|161522615|ref|YP_001585544.1| cold-shock DNA-binding domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|160346168|gb|ABX19252.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
ATCC 17616]
Length = 193
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW++ DKG+GFI ES D F H S V G EG +V +D N
Sbjct: 2 RGTVKWFSKDKGHGFI----YGESAVDYFFHVSDVV--GADAPREGDIVEFDATSNKRGP 55
Query: 64 KYSAENLKLVPK 75
+ A +++V +
Sbjct: 56 R--AATVRIVER 65
>gi|289581794|ref|YP_003480260.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
gi|289531347|gb|ADD05698.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
Length = 64
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E + DDVF H + G +L EGQ + ++ Q
Sbjct: 1 MAKGTVDFFNDTGGYGFIETEDA---DDDVFFHMEDI---GGPDLEEGQELEFEIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N++ +
Sbjct: 55 GPR--ATNVERL 64
>gi|22003878|ref|NP_665832.1| protein lin-28 homolog A [Mus musculus]
gi|81914711|sp|Q8K3Y3|LN28A_MOUSE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
Full=Testis-expressed protein 17
gi|21842298|gb|AAM77749.1|AF521097_1 RNA-binding protein LIN-28 [Mus musculus]
gi|126540562|emb|CAM46107.1| lin-28 homolog (C. elegans) [Mus musculus]
gi|148698092|gb|EDL30039.1| lin-28 homolog (C. elegans) [Mus musculus]
Length = 209
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|83814564|ref|YP_446548.1| hypothetical protein SRU_2449 [Salinibacter ruber DSM 13855]
gi|294508486|ref|YP_003572544.1| Cold shock-like protein cspC [Salinibacter ruber M8]
gi|83755958|gb|ABC44071.1| conserved domain protein [Salinibacter ruber DSM 13855]
gi|294344814|emb|CBH25592.1| Cold shock-like protein cspC [Salinibacter ruber M8]
Length = 75
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
+ +G +K+++ +G+GFI P +DVFLH + ++ +L EGQ + Y+ Q +
Sbjct: 1 MEKGKLKFFDTSRGFGFIEPLD---GSEDVFLHANNISGMTSGEDLREGQTIEYETEQTE 57
Query: 61 ANGKYSAENLKLVPKSS 77
SA N ++S
Sbjct: 58 KG--LSALNAAPADETS 72
>gi|291448330|ref|ZP_06587720.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL
15998]
gi|291351277|gb|EFE78181.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL
15998]
Length = 142
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I ++ +GYGFI P+ E +DVF+H + + G+ V Y D
Sbjct: 1 MMTGKILRFDEVRGYGFIAPD---EGDEDVFMHANDLLEEKYLY-QAGRRVEYFLESGDK 56
Query: 62 NGKYSAENLKLVPKSS 77
K A ++LV +++
Sbjct: 57 GPK--AGEIRLVRQAA 70
>gi|224457360|ref|ZP_03665833.1| cold shock DNA -binding domain-containing protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254875063|ref|ZP_05247773.1| cold shock protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254841062|gb|EET19498.1| cold shock protein [Francisella tularensis subsp. tularensis
MA00-2987]
Length = 142
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K+YN DKGYGFI E S + V L S + G V ++ Q+
Sbjct: 2 QGTVKFYNKDKGYGFIYSEESEKDFLMVKLFLSELLRNGS------DDVEFEVAQSKKGE 55
Query: 64 KYSAENLKLVPKSSN 78
K A N+KL+ + +
Sbjct: 56 K--AINIKLLKSAED 68
>gi|313674903|ref|YP_004052899.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
4126]
gi|312941601|gb|ADR20791.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
4126]
Length = 63
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFI E + D F+H S + + ++ E V Y+
Sbjct: 1 MNKGTVKFFNDSKGFGFIIDESTQ---QDYFVHVSGL----IDDIRENDEVVYELQDGKK 53
Query: 62 NGKYSAENLKL 72
+A N+KL
Sbjct: 54 G--LNAVNVKL 62
>gi|291395012|ref|XP_002713966.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
Length = 203
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG----DDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ DVF+H+S + G +L EG+ V + + ++
Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 95
Query: 61 AN 62
Sbjct: 96 KG 97
>gi|157816953|ref|NP_001102739.1| protein lin-28 homolog A [Rattus norvegicus]
gi|149024199|gb|EDL80696.1| rCG30757 [Rattus norvegicus]
Length = 209
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|312891332|ref|ZP_07750850.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
DSM 18603]
gi|311296193|gb|EFQ73344.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
DSM 18603]
Length = 63
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GFI P ++F+H S + + + E V Y+ +
Sbjct: 1 MQSGTVKFFNETKGFGFIVPSN---GDSEIFVHSSGL----IDQIRENDSVNYEVERGKK 53
Query: 62 NGKYSAENLKLV 73
++A N+K+V
Sbjct: 54 G--FNAVNVKVV 63
>gi|72170454|ref|XP_792032.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus
purpuratus]
gi|115937083|ref|XP_001186027.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus
purpuratus]
Length = 234
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+RG KW++ K YGF+TP+ DVF+H+ + G +L + V Y + ++
Sbjct: 63 YRGKCKWFSLAKCYGFLTPDD---GSGDVFVHQRVIKMVGYRSLDTNEEVEYKFQFSEKG 119
>gi|255586259|ref|XP_002533782.1| cold shock protein, putative [Ricinus communis]
gi|223526283|gb|EEF28595.1| cold shock protein, putative [Ricinus communis]
Length = 257
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG + WY+ +KGYGFI P G G DVF+H S++ S G +L G + Y+ + ++A
Sbjct: 109 RARGILIWYSNEKGYGFIKPNG---GGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNA 165
Query: 62 NGKYSAENLK 71
GK A N+
Sbjct: 166 -GKLQAINVT 174
>gi|254464203|ref|ZP_05077614.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
Y4I]
gi|206685111|gb|EDZ45593.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
Y4I]
Length = 179
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KGYGF+ + E G D+ LH + + + G ++ +G + V +
Sbjct: 12 QGLVKWFDPAKGYGFVVSD---EGGPDILLHVNVLRNFGQSSVADGARIE--IVTHQTGR 66
Query: 64 KYSAENL 70
A +
Sbjct: 67 GVQAVEV 73
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G G+DVFLH + +GL +L G+ + + + G+
Sbjct: 107 RVKWFDKGKGFGFANVFGR---GEDVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGRM 162
Query: 66 SAENL 70
+ E L
Sbjct: 163 AVEVL 167
>gi|163868307|ref|YP_001609516.1| cold shock protein [Bartonella tribocorum CIP 105476]
gi|161017963|emb|CAK01521.1| cold shock protein [Bartonella tribocorum CIP 105476]
Length = 191
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ D+ LH + + G EG V + + K
Sbjct: 28 GVIKWFDGSKGYGFIVPDLPHF--PDILLHVTVMRRDGFQTAMEGAKVICAVEKTERGLK 85
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 118 ERAIVKWFNRDKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGEKG 174
>gi|89054965|ref|YP_510416.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1]
gi|88864514|gb|ABD55391.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
Length = 181
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + +DVF+H + +G L G+ V V + G+
Sbjct: 116 RVKWFDKAKGFGFANVFGHS---EDVFVHVEVLRRSGFTELQPGEAVAMKVV-DGPRGRM 171
Query: 66 SAEN 69
+AE
Sbjct: 172 AAEV 175
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GF+ + E G D+ LH + + S G ++ EG V
Sbjct: 24 GVVKWFDTTKGFGFVLSD---EGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRG-- 78
Query: 65 YSAENLKLVPK 75
A + +
Sbjct: 79 LQAVEIIAIEA 89
>gi|3821923|gb|AAC69703.1| major cold shock protein [Lactobacillus helveticus]
Length = 50
Score = 62.0 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT DVF+H SA+ + G +L EGQ V+YD Q A N
Sbjct: 1 KGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGGRG--PQAAN 50
>gi|315501502|ref|YP_004080389.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
gi|315408121|gb|ADU06238.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
Length = 123
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KWY+ KGYGF+T + G DVFL + A+ AG+ +L GQ V + V + A
Sbjct: 2 KWYDAAKGYGFVTSD----EGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRG--AQA 54
Query: 68 ENLKLVPKSSN 78
+KL+ +
Sbjct: 55 MGVKLLEAPPS 65
>gi|302865005|ref|YP_003833642.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
gi|302567864|gb|ADL44066.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
27029]
Length = 123
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KWY+ KGYGF+T + G DVFL + A+ AG+ +L GQ V + V + A
Sbjct: 2 KWYDAAKGYGFVTSD----EGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRG--AQA 54
Query: 68 ENLKLVPKSSN 78
+KL+ +
Sbjct: 55 MGVKLLEAPPS 65
>gi|327440390|dbj|BAK16755.1| cold shock protein [Solibacillus silvestris StLB046]
Length = 77
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND--A 61
RG K ++ ++G+G+I+ E DV++H S++ G +LT G+ V++D +N
Sbjct: 6 RGVCKIFDDEEGWGWISIE----GEADVWVHFSSIQMDGFKSLTIGEAVSFDLEENPNLK 61
Query: 62 NGKYSAENLKLVPK 75
A N+K + K
Sbjct: 62 EQSRRAVNVKKLAK 75
>gi|319428067|gb|ADV56141.1| Cold-shock protein DNA-binding protein [Shewanella putrefaciens
200]
Length = 149
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G +KW++ +G+GFIT S G D + H S V + L + G VT++ +
Sbjct: 1 MRIQGVVKWFSVPQGFGFIT---SITEGTDHYFHVSDVIGSALPEI--GDKVTFETISTP 55
Query: 61 ANGKYSAENLK 71
+ LK
Sbjct: 56 KGLRGKRVELK 66
>gi|295394518|ref|ZP_06804741.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294972697|gb|EFG48549.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 120
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ +KG+GF+T + D+FLH++A+ G+ + G + +D V
Sbjct: 1 MPVGRVKWFDQEKGFGFVTSDEG-----DMFLHQTAL-PDGVK-VAPGTRLEFDVVDGRR 53
Query: 62 NGK 64
+
Sbjct: 54 GKQ 56
>gi|83594086|ref|YP_427838.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|83577000|gb|ABC23551.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
Length = 70
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
+ G++KW+N KG+GFI P+ G D F+H SAV + +
Sbjct: 1 MTTGTVKWFNVQKGFGFIAPDD---GGSDAFVHISAVERSSDRS 41
>gi|169235137|ref|YP_001688337.1| cold shock protein [Halobacterium salinarum R1]
gi|167726203|emb|CAP12980.1| putative cold shock protein [Halobacterium salinarum R1]
Length = 64
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI E + +DVF H V G +L EGQ V +D Q D
Sbjct: 1 MATGEVDFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|86132446|ref|ZP_01051040.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
gi|85817007|gb|EAQ38191.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
Length = 64
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KGYGFIT + E+G D+F+H + + + EG V Y + G
Sbjct: 3 GTVKFFNESKGYGFITND---ETGKDIFVHVTGLNGE---TINEGDKVEY-VEEEGRKGL 55
Query: 65 YSAEN 69
+A+
Sbjct: 56 TAAQV 60
>gi|319404271|emb|CBI77864.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
Length = 193
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ D+ LH + + G EG V Q + K
Sbjct: 30 GVIKWFDGSKGYGFIIPDL--PGLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 87
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 120 ERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGEKG 176
>gi|146277100|ref|YP_001167259.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145555341|gb|ABP69954.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC
17025]
Length = 180
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GF G + +DVF+H + +G +L G+ V ++ G+
Sbjct: 106 GRVKWFDKGKGFGFANVFGRS---EDVFIHVEVLRMSGFADLAAGEAVALRIIEG-RRGR 161
Query: 65 YSAENLK 71
+ + +
Sbjct: 162 MAVQVVS 168
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GFI + E+G D+ LH + + + G ++ +G +T
Sbjct: 13 GRVKWFDPAKGFGFIV---TEENGADILLHANVLRNYGQSSVADGAGITVKVQSTQRG-- 67
Query: 65 YSAENLKLVPKSS 77
A + + +
Sbjct: 68 VQAVEVVEIEPPA 80
>gi|289607243|emb|CBI60851.1| unnamed protein product [Sordaria macrospora]
Length = 194
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG IKW++ +G+GF + S+ DV +H S + G L EG +V + +
Sbjct: 34 RGVIKWFDVTRGFGFAVADDSSLG--DVLIHFSVLEPHGRRTLPEGAIVLCNAARRSRG- 90
Query: 64 KYSAENL 70
A +
Sbjct: 91 -MQAVEI 96
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KGYGF+ +G DVF+H + G+ + Q + V+
Sbjct: 132 VKWFNRLKGYGFLVRDG---QAGDVFVHMETLRRGGIEEVEPDQRLVARIVEGQKGPMAI 188
Query: 67 AEN 69
A
Sbjct: 189 AVE 191
>gi|289581257|ref|YP_003479723.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
gi|289530810|gb|ADD05161.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
Length = 64
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI E + +DVF H V G +L EGQ + +D Q D
Sbjct: 1 MAKGTVAFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGPDLEEGQELEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A N++ +
Sbjct: 55 GPR--ATNVERL 64
>gi|319407276|emb|CBI80917.1| cold shock protein [Bartonella sp. 1-1C]
Length = 191
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ + D+ LH + + G EG V Q + K
Sbjct: 28 GVIKWFDGSKGYGFIIPDLPSL--PDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 85
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 118 ERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGEKG 174
>gi|295704910|ref|YP_003597985.1| cold shock protein [Bacillus megaterium DSM 319]
gi|294802569|gb|ADF39635.1| cold shock protein [Bacillus megaterium DSM 319]
Length = 72
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
GFI E GDDVF+H S++ S G +L EGQ VT+D Q A N+ V
Sbjct: 21 GFIEIE----GGDDVFVHFSSIQSEGFKSLDEGQKVTFDIEQGQRG--AQAANVHKV 71
>gi|194750622|ref|XP_001957629.1| GF23931 [Drosophila ananassae]
gi|190624911|gb|EDV40435.1| GF23931 [Drosophila ananassae]
Length = 142
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ KG+GFITP + G+DVF H S + + G V Y
Sbjct: 54 MVTGVVKSFSRTKGHGFITP---SAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPP 108
Query: 62 N-GKYSAENLKL 72
K+ A ++++
Sbjct: 109 KYEKHQAVHVQI 120
>gi|330508303|ref|YP_004384731.1| cold shock DNA binding domain-containing protein [Methanosaeta
concilii GP-6]
gi|328929111|gb|AEB68913.1| cold shock DNA binding domain protein [Methanosaeta concilii
GP-6]
Length = 64
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N K +GFI + G D F+H + + +TEG V+++ V+ +
Sbjct: 1 MVSGTVKFFNRTKRFGFIAGDD----GKDYFVHATGLMPD--VTITEGDKVSFEVVEGEK 54
Query: 62 NGKYSAENLKL 72
K A+ +
Sbjct: 55 GPK--ADRVTK 63
>gi|255084065|ref|XP_002508607.1| predicted protein [Micromonas sp. RCC299]
gi|226523884|gb|ACO69865.1| predicted protein [Micromonas sp. RCC299]
Length = 303
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G +NP +G+GFITP+ + G+D+F H S++ + L EG V YD +D
Sbjct: 73 RKTGVAGRWNP-RGFGFITPD---QGGEDLFCHFSSITDGNM--LNEGARVEYDESFDDR 126
Query: 62 NGKYSAENLK 71
GK AE +
Sbjct: 127 KGKPRAERVT 136
>gi|195428158|ref|XP_002062141.1| GK16809 [Drosophila willistoni]
gi|194158226|gb|EDW73127.1| GK16809 [Drosophila willistoni]
Length = 143
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ KG+GFITP G+DVF H S + + G V Y
Sbjct: 54 MVTGVVKSFSRTKGHGFITP---QAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPP 108
Query: 62 N-GKYSAENLKL 72
K+ A ++++
Sbjct: 109 KYEKHQAVHVQI 120
>gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
11568]
gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
11568]
Length = 173
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW+N KGYGF+ +G D+F+H + GL +L G V + +
Sbjct: 110 VVKWFNRTKGYGFVVRDG---QAGDIFVHVETLRRCGLDDLLPGDPVNVRFAEGPKG 163
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYGFI P+ + + DV LH +++ AG EG + + +
Sbjct: 11 GRVKWFDAGKGYGFIVPDQPDLTEERDVLLHVTSLRDAGHEMAGEGAAIVCECAKRAKG- 69
Query: 64 KYSAENLKLVPKSS 77
+ N+ + S+
Sbjct: 70 -WQVINIVELEASA 82
>gi|258654047|ref|YP_003203203.1| cold-shock DNA-binding domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258557272|gb|ACV80214.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
DSM 44233]
Length = 101
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
+ RG +K++ PDKG+G IT + G D ++H S + S G L G +V +D
Sbjct: 1 MARGFVKFFKPDKGWGAITSDAL-PEGSDAWVHFSVIESDGYRALDAGDVVDFD 53
>gi|326381637|ref|ZP_08203331.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326199884|gb|EGD57064.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 161
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYDYVQ 58
M G + ++ ++G+GF+ P E GDDVFLH + V G+ L G V +D
Sbjct: 1 MAVNGKVVHFDTNRGFGFLAPA---EGGDDVFLHINDV---GIDESLLRPGAEVEFDVES 54
Query: 59 NDANGKYSAENLKLVPKSSN 78
D K A N+K+ ++
Sbjct: 55 TDRGAK--ALNVKVTKEAPE 72
>gi|227486664|ref|ZP_03916980.1| cold shock protein CspA [Anaerococcus lactolyticus ATCC 51172]
gi|227235376|gb|EEI85391.1| cold shock protein CspA [Anaerococcus lactolyticus ATCC 51172]
Length = 66
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
+ G +K+++ KG+GFI G+D+F+H S + + L G V ++ ++
Sbjct: 1 MSIGVVKFFDNKKGFGFI-----KWGGEDLFVHFSDIVSEEEFKKLETGDNVEFEKIEAP 55
Query: 61 ANGKYSAENLKLV 73
A+ +K +
Sbjct: 56 RG--PQAKKVKKI 66
>gi|86134369|ref|ZP_01052951.1| cold shock protein [Polaribacter sp. MED152]
gi|85821232|gb|EAQ42379.1| cold shock protein [Polaribacter sp. MED152]
Length = 63
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N KG+GF+ +GS + F+H S + + + EG V +D +
Sbjct: 1 MKNGTVKFFNESKGFGFVIEDGSKT---EYFVHVSGL----IDEIREGDAVEFDLKEGRK 53
Query: 62 NGKYSAENLKLV 73
+A +++++
Sbjct: 54 G--LNAVDVRVI 63
>gi|119383611|ref|YP_914667.1| cold-shock DNA-binding domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119373378|gb|ABL68971.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
PD1222]
Length = 197
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GF+T G D+ LH + + + G ++ EG V +Q G
Sbjct: 13 GVVKWFDGSKGFGFLTDPD---GGADILLHANVLRNFGQSSVAEGSHV-IAIIQKTPRGM 68
Query: 65 YSAENLKLVPKSSN 78
+ E L++ P +S
Sbjct: 69 QAVEVLEITPPASE 82
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF DVFLH + +G +L G+ + V + G
Sbjct: 107 RVKWFDKAKGFGF---ANIFADKADVFLHVEVLRHSGFADLAVGEAIALRVV-DGRRGMM 162
Query: 66 SAE 68
+A+
Sbjct: 163 AAQ 165
>gi|149369607|ref|ZP_01889459.1| cold shock protein [unidentified eubacterium SCB49]
gi|149357034|gb|EDM45589.1| cold shock protein [unidentified eubacterium SCB49]
Length = 63
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++K++N KG+GFIT + +G D+F+H + + L EG V Y V+ +
Sbjct: 3 GTVKFFNESKGFGFITNDD---TGKDIFVHITGLNG---QALNEGDKVEY--VEEEGRKG 54
Query: 65 YSAENLKLV 73
A ++++
Sbjct: 55 MVAGQVRVI 63
>gi|77462899|ref|YP_352403.1| cold-shock DNA-binding protein family protein [Rhodobacter
sphaeroides 2.4.1]
gi|126461790|ref|YP_001042904.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides ATCC 17029]
gi|221638771|ref|YP_002525033.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
KD131]
gi|332557790|ref|ZP_08412112.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
gi|77387317|gb|ABA78502.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
2.4.1]
gi|126103454|gb|ABN76132.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC
17029]
gi|221159552|gb|ACM00532.1| Cold-shock DNA-binding protein family precursor [Rhodobacter
sphaeroides KD131]
gi|332275502|gb|EGJ20817.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
sphaeroides WS8N]
Length = 180
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GF G +DVF+H + +G +L G+ V ++ G+
Sbjct: 106 GRVKWFDKGKGFGFANVFGRP---EDVFIHVEVLRMSGFADLAAGEAVALRIIEG-RRGR 161
Query: 65 YSAENLK 71
+ + +
Sbjct: 162 MAVQVVS 168
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GFI + E+G D+ LH + + + G ++ +G +T
Sbjct: 13 GRVKWFDPAKGFGFIV---TEENGADILLHANVLRNYGQSSVADGAGITVKVQSTQRG-- 67
Query: 65 YSAENLKLVPK 75
A + +
Sbjct: 68 VQAVEVIEIEP 78
>gi|227539208|ref|ZP_03969257.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
gi|300770682|ref|ZP_07080561.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33861]
gi|227240890|gb|EEI90905.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
gi|300763158|gb|EFK59975.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33861]
Length = 63
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFI P ++F+H + + + + E V+Y+ Q
Sbjct: 1 MQEGVVKFFNEAKGFGFIIPNSGEG---EIFVHVTGL----IDKIRENDNVSYEVEQGRK 53
Query: 62 NGKYSAENLKLV 73
+A N+K++
Sbjct: 54 G--LNAVNVKVI 63
>gi|257053654|ref|YP_003131487.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
gi|256692417|gb|ACV12754.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
Length = 64
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + +DVF H V G +L EGQ V +D Q +
Sbjct: 1 MATGTVDFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGPDLEEGQEVEFDIEQAEK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|159898821|ref|YP_001545068.1| cold-shock DNA-binding domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891860|gb|ABX04940.1| cold-shock DNA-binding domain protein [Herpetosiphon aurantiacus
ATCC 23779]
Length = 197
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++ W++P+K YGFIT T +G +F+HR A+ G L EG+ V++ V+
Sbjct: 6 TGTVAWFDPEKSYGFIT----THAGASLFVHRRAL-GDGRRWLVEGEEVSFVVVRGMKGD 60
Query: 64 KYSAENL---KLVPKSS 77
+ A ++ +P +
Sbjct: 61 E--ANDVLVTSALPPTP 75
>gi|323454256|gb|EGB10126.1| hypothetical protein AURANDRAFT_62693 [Aureococcus anophagefferens]
Length = 137
Score = 61.6 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
H G ++WY K YGFI E S D+F+H S + L G V++ +
Sbjct: 38 RHTGVVRWYTEKKHYGFI--ESKGASATDLFVHSSELEE----PLRAGDTVSFVI--GER 89
Query: 62 NGKYSAENLKLVPKSS 77
G+ +A +++V ++
Sbjct: 90 RGRSAATKVEVVERAP 105
>gi|260808771|ref|XP_002599180.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
gi|229284457|gb|EEN55192.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
Length = 121
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY-DYVQND 60
+ RG +K + KG+GFI P DD+F+H S + G + L +G VTY +
Sbjct: 43 MKRGIVKNFCRQKGHGFIKPHD---GSDDIFVHISDI--DGEYVLKDGDEVTYKECPIPP 97
Query: 61 ANGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 98 KNLKVQAIEVTIANLAP 114
>gi|163736548|ref|ZP_02143967.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis
BS107]
gi|161390418|gb|EDQ14768.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis
BS107]
Length = 178
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KG+GF+ + E G D+ LH + + + G ++ +G V + +
Sbjct: 12 RGLVKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAEVELVTHRTERG- 67
Query: 64 KYSAENL-KLVPKSSN 78
A + + P + +
Sbjct: 68 -VQAVEVLSITPPARD 82
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVFLH + +GL L G+ + + + G+
Sbjct: 107 RVKWFDKGKGFGFANVFGR---DEDVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRM 162
Query: 66 SAENL 70
+ E L
Sbjct: 163 AVEVL 167
>gi|148284974|ref|YP_001249064.1| cold shock-like protein [Orientia tsutsugamushi str. Boryong]
gi|189184097|ref|YP_001937882.1| cold shock protein [Orientia tsutsugamushi str. Ikeda]
gi|146740413|emb|CAM80883.1| Cold shock-like protein [Orientia tsutsugamushi str. Boryong]
gi|189180868|dbj|BAG40648.1| cold shock protein [Orientia tsutsugamushi str. Ikeda]
Length = 73
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
+ G +KWYN KGYGFI P + G +DVF+H +AV +AG+ +L EGQ V++
Sbjct: 1 MATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQI-- 58
Query: 59 NDANGKYSAENLKL 72
G+ A NL L
Sbjct: 59 GSQKGRIYATNLVL 72
>gi|56462192|gb|AAV91379.1| hypothetical protein 18 [Lonomia obliqua]
Length = 254
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ + ++ +G++V + V +
Sbjct: 31 GTVKWFNVKSGYGFINRNDTK---EDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGE 87
Query: 61 AN 62
Sbjct: 88 KG 89
>gi|182678527|ref|YP_001832673.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182634410|gb|ACB95184.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 205
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF++ +D+F+H + G+ L G+ + + Q
Sbjct: 135 KVKWFNRVKGFGFLSRGD---GTEDIFVHMEILRRHGISILHPGEELRARFGQGPKG--L 189
Query: 66 SAENLKLVPKSS 77
A ++ + +
Sbjct: 190 IAIEVRPLDAPA 201
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGF+ + DV LH +A+ G EG V + ++
Sbjct: 35 GRIKWFDLVKGYGFVVADN---GLGDVLLHVTALRKDGHSKACEGARVVCEAMRGTKG 89
>gi|93005152|ref|YP_579589.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
cryohalolentis K5]
gi|92392830|gb|ABE74105.1| cold-shock DNA-binding domain protein [Psychrobacter
cryohalolentis K5]
Length = 253
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IK +N DKGYGFI + + +DVF H +V A +++GQ V ++ +ND
Sbjct: 3 MQSGKIKHWNSDKGYGFIDVDNQS---EDVFFHIKSVRMA--QPISKGQRVYFNSERNDK 57
Query: 62 NGKYSAENLK 71
N + A +
Sbjct: 58 N-QLRATEVT 66
>gi|289643977|ref|ZP_06476078.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
gi|289506205|gb|EFD27203.1| cold-shock DNA-binding domain protein [Frankia symbiont of
Datisca glomerata]
Length = 146
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59
MV G I ++ +GYGFI P+ GDD+F+H + + +L G LV ++ ++
Sbjct: 1 MVGTGRILRFDGVRGYGFIAPD---AGGDDIFMHANDLQDE--KHLFQPGTLVEFEAEES 55
Query: 60 DANGKYSAENLKLVPKS 76
D K A ++L ++
Sbjct: 56 DRGPK--ASVVRLARRA 70
>gi|270291449|ref|ZP_06197671.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
acidilactici 7_4]
gi|270280295|gb|EFA26131.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
acidilactici 7_4]
Length = 70
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++ KGYGFI + G+ F+H SAV S L E ++V +
Sbjct: 1 METGTVTSFDKTKGYGFIELDN----GEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPK 56
Query: 62 NGKYSAENL 70
A +
Sbjct: 57 G--LVAVKV 63
>gi|309774677|ref|ZP_07669701.1| cold-shock domain family protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308917577|gb|EFP63293.1| cold-shock domain family protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 86
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+ W++ +KGYGF+ + G +H + + G L GQ VTY+ ++ +
Sbjct: 12 GTCIWFSDEKGYGFLLSDD----GVSSMVHYTDIKEPGFKRLYRGQRVTYEELETERG-- 65
Query: 65 YSAENLK 71
SA +K
Sbjct: 66 RSARRVK 72
>gi|3821913|gb|AAC69698.1| major cold shock protein [Lactococcus lactis subsp. lactis]
gi|3821917|gb|AAC69700.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
Length = 50
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G DVF H S + ++G L EGQ VT+D A N
Sbjct: 1 KGFGFITSED----GQDVFAHFSQIQTSGFKTLDEGQKVTFDVEAGQRG--PQAAN 50
>gi|323136356|ref|ZP_08071438.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
gi|322398430|gb|EFY00950.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
49242]
Length = 191
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+FLH V G+ L G V Y
Sbjct: 121 IVKWFNRVKGFGFLTR---GEGTEDIFLHMETVRRYGMTELKPGDSVLVRYGDGPKG--L 175
Query: 66 SAENLKLVPKSS 77
A ++ + S
Sbjct: 176 MAAEVRPLEAKS 187
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGF+ P+ D+ LH + + +GL EG V + +
Sbjct: 28 GRIKWFDVAKGYGFVVPDD---GSPDILLHVTILRRSGLQTAFEGARVVCEAQKRAKG 82
>gi|116629830|ref|YP_815002.1| cold shock protein [Lactobacillus gasseri ATCC 33323]
gi|238853977|ref|ZP_04644334.1| conserved domain protein [Lactobacillus gasseri 202-4]
gi|282851661|ref|ZP_06261026.1| cold-shock DNA-binding domain protein [Lactobacillus gasseri
224-1]
gi|300361466|ref|ZP_07057643.1| cold-shock protein [Lactobacillus gasseri JV-V03]
gi|311110528|ref|ZP_07711925.1| conserved domain protein [Lactobacillus gasseri MV-22]
gi|116095412|gb|ABJ60564.1| cold-shock DNA-binding protein family [Lactobacillus gasseri ATCC
33323]
gi|238833422|gb|EEQ25702.1| conserved domain protein [Lactobacillus gasseri 202-4]
gi|282557629|gb|EFB63226.1| cold-shock DNA-binding domain protein [Lactobacillus gasseri
224-1]
gi|300354085|gb|EFJ69956.1| cold-shock protein [Lactobacillus gasseri JV-V03]
gi|311065682|gb|EFQ46022.1| conserved domain protein [Lactobacillus gasseri MV-22]
Length = 69
Score = 61.2 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++K ++ + YGFI + + S F+ ++ G L GQ V Y Q
Sbjct: 1 MRKGTVKQFDSNSAYGFIEDDLTHSS---YFVFYKSIKEEGYKKLNVGQRVRYQLAQGKK 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|238897472|ref|YP_002923149.1| RNA chaperone, transcription antiterminator [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465227|gb|ACQ67001.1| RNA chaperone, transcription antiterminator [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 69
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +KW++ GYGFI+PE G D+++H++A+A+ +L GQ V + Y +
Sbjct: 4 KKGKVKWFDKIAGYGFISPED---GGLDIYVHKAAIANIKDKSLIAGQDVEFSYRVSFHG 60
Query: 63 GKYSAENL 70
SAE++
Sbjct: 61 --PSAEDV 66
>gi|110634084|ref|YP_674292.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
BNC1]
gi|110285068|gb|ABG63127.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
Length = 197
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G +
Sbjct: 128 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGVTELRPGQVVLVRFGRGDK-GLMA 183
Query: 67 AE 68
AE
Sbjct: 184 AE 185
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+IKW++ KG+GFI P+ + DV LH S + G G V + D
Sbjct: 33 GAIKWFDVAKGFGFILPDIAEFG--DVLLHVSCLRRDGFQTALSGARVVCLAKRGDKG-- 88
Query: 65 YSAENL 70
A +
Sbjct: 89 MQAFRV 94
>gi|84687162|ref|ZP_01015043.1| cold shock DNA-binding domain protein [Maritimibacter
alkaliphilus HTCC2654]
gi|84664750|gb|EAQ11233.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2654]
Length = 185
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG++KW++P KG+GF+ + + G D+ LH + + + G ++ + +
Sbjct: 21 QRGTVKWFDPAKGFGFVVAD---QGGPDILLHANVLRNFGQSSVADRAGIEIVVQDTPRG 77
Query: 63 GKYSAENLKLVPKSSN 78
A + + + +
Sbjct: 78 --MQAVEVLAIHAAES 91
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW++ KG+GF + +DVF+H + +GL +L G+ + +
Sbjct: 115 RVKWFDKGKGFGF---ANAFGKPEDVFIHVEVLRRSGLADLQPGEAIGMRAAMGERG 168
>gi|87307223|ref|ZP_01089368.1| probable cold shock protein scoF [Blastopirellula marina DSM
3645]
gi|87289963|gb|EAQ81852.1| probable cold shock protein scoF [Blastopirellula marina DSM
3645]
Length = 68
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G IK DKG+GFI T S D+F H S++ +L EGQ V+Y Q
Sbjct: 3 LMPEGKIKRL-TDKGFGFI----DTGSNKDLFFHMSSLEGCRYDDLREGQTVSYVEGQGP 57
Query: 61 ANGKYSAENLKLV 73
+ AE ++++
Sbjct: 58 KGPR--AEQVQVI 68
>gi|259507144|ref|ZP_05750044.1| cold-shock domain family protein [Corynebacterium efficiens
YS-314]
gi|259165267|gb|EEW49821.1| cold-shock domain family protein [Corynebacterium efficiens
YS-314]
Length = 122
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KWY+P++G+GF+ S G+D F+ + + G+ L +GQ + +D+ A
Sbjct: 2 KWYDPERGFGFV----SNPGGEDCFVGKQVLPK-GVTELHQGQRIEFDFAAGRKG--PQA 54
Query: 68 ENLKLVPK 75
+K++
Sbjct: 55 LRVKVLET 62
>gi|260577276|ref|ZP_05845250.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
gi|259020520|gb|EEW23842.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
Length = 177
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GFI + E G D+ LH + + + G ++ +G ++ + G+
Sbjct: 13 GHVKWFDPTKGFGFIVAD---EGGPDILLHANVLRNYGQSSVADGTAISVNVQATQR-GR 68
Query: 65 YSAENLKLVPKSS 77
+ E L++ P +
Sbjct: 69 QAVEVLEIEPPVA 81
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVF+H + +G +L G+ V + + G+
Sbjct: 107 RVKWFDKGKGFGFANVFGRP---EDVFVHVEVLRLSGFADLAAGEAVGLRIL-DGKRGRM 162
Query: 66 SAENLK 71
+ + +
Sbjct: 163 AVQVVS 168
>gi|149203726|ref|ZP_01880695.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035]
gi|149142843|gb|EDM30885.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035]
Length = 177
Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KG+GF+ + E G D+ LH + + + G ++ + V D Q +
Sbjct: 12 KGRVKWFDPVKGFGFVIAD---EGGPDILLHPNVLRNFGQSSVADRAGVELDVQQTERGR 68
Query: 64 KYSAEN 69
+ A +
Sbjct: 69 QAVAVH 74
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF + +DVF+H + +GL ++ G+ + + + G+
Sbjct: 107 RVKWFDKGKGFGF---ANTFGRDEDVFVHIEVLRRSGLADVQPGEALAIRVI-DGKRGRM 162
Query: 66 SAEN 69
+ E
Sbjct: 163 ATEV 166
>gi|83594791|ref|YP_428543.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|83577705|gb|ABC24256.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
Length = 210
Score = 60.8 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K+++ DKG+GF+ P+G G DV++ + G+ L +GQ V
Sbjct: 147 GVVKFFSADKGFGFVVPDG---GGKDVYVGSRTLQDCGVSVLEQGQRVRMSIRMGKKG-- 201
Query: 65 YSAENLKLV 73
A +L+L+
Sbjct: 202 PMAGSLELI 210
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
++KW+N KG+GF+ D FLH S + AG L EG + D
Sbjct: 6 TATVKWFNATKGFGFVRVSDGE---PDAFLHISVLQRAGYSELPEGATIVCDLAPGQKGM 62
Query: 64 KYS 66
+ S
Sbjct: 63 QVS 65
>gi|261330889|emb|CBH13874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 504
Score = 60.8 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 43/119 (36%)
Query: 1 MVHR------GSIKWYNPDKGYGF---------ITPEGSTESG----------------- 28
M+++ G +K YNP +G+GF I P+ +G
Sbjct: 209 MMYQLGEWYEGVVKRYNPMRGFGFLTATHHLQVIPPDVDNRAGSVSDADGQNSQQTASPP 268
Query: 29 -----------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
DVF+H+S + G L+ G V + + A +++L+ +
Sbjct: 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTA 327
>gi|72393617|ref|XP_847609.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62176758|gb|AAX70857.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70803639|gb|AAZ13543.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 504
Score = 60.8 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 43/119 (36%)
Query: 1 MVHR------GSIKWYNPDKGYGF---------ITPEGSTESG----------------- 28
M+++ G +K YNP +G+GF I P+ +G
Sbjct: 209 MMYQLGEWYEGVVKRYNPMRGFGFLTATHHLQVIPPDVDNRAGSVSDADGQNSQQTASPP 268
Query: 29 -----------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
DVF+H+S + G L+ G V + + A +++L+ +
Sbjct: 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTA 327
>gi|76802909|ref|YP_331004.1| cold shock protein [Natronomonas pharaonis DSM 2160]
gi|76558774|emb|CAI50367.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
Length = 64
Score = 60.8 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++N GYGFI + ES +DVF H + G +L EGQ V +D Q D
Sbjct: 1 MAKGEVDFFNDTGGYGFI---DTDESDEDVFFHMEDI---GGPDLEEGQEVEFDIEQADK 54
Query: 62 NGKYSAENLKLV 73
+ A+NL +
Sbjct: 55 GPR--AKNLTRL 64
>gi|322370080|ref|ZP_08044642.1| cold shock protein [Haladaptatus paucihalophilus DX253]
gi|320550416|gb|EFW92068.1| cold shock protein [Haladaptatus paucihalophilus DX253]
Length = 64
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++N GYGFI+ + + DDVF H V G +L EGQ + +D Q
Sbjct: 1 MAKGKVDFFNDTGGYGFISTDDA---DDDVFFHMEDV---GGADLEEGQEIEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A+N+ +
Sbjct: 55 GPR--AKNVTRL 64
>gi|294677870|ref|YP_003578485.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
capsulatus SB 1003]
gi|294476690|gb|ADE86078.1| cold-shock DNA-binding domain protein [Rhodobacter capsulatus SB
1003]
Length = 177
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVF+H + +G +L G+ V ++ G+
Sbjct: 108 RVKWFDKGKGFGFANVFGRP---EDVFIHVEVLRRSGFADLAPGEAVCLRVIEG-RRGRM 163
Query: 66 SAE 68
+A+
Sbjct: 164 AAQ 166
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GFI E G D+ LH + + + G ++ + + VQ G
Sbjct: 13 GRVKWFDAGKGFGFI---LDGEGGPDILLHANVLRNFGQSSVADNAGIRV-LVQATPRGA 68
Query: 65 YSAENLKLVPKSSN 78
+ E L++ P ++
Sbjct: 69 QAVEVLEISPPETD 82
>gi|3121924|sp|Q46051|CSPA_CITFR RecName: Full=Major cold shock protein
gi|3121925|sp|Q46664|CSPA_ENTAE RecName: Full=Major cold shock protein
gi|3121930|sp|Q53816|CSPA_SHIBO RecName: Full=Major cold shock protein
gi|3121934|sp|Q56178|CSPA_SALVI RecName: Full=Major cold shock protein
gi|1402743|gb|AAC80237.1| major cold-shock protein [Citrobacter freundii]
gi|1402745|gb|AAC80236.1| major cold-shock protein [Citrobacter freundii]
gi|1402747|gb|AAC80238.1| major cold-shock protein [Enterobacter aerogenes]
gi|1402749|gb|AAC80239.1| major cold-shock protein [Escherichia coli]
gi|1402773|gb|AAC80240.1| major cold-shock protein [Shigella boydii]
gi|1402779|gb|AAC80241.1| major cold-shock protein [Shigella flexneri]
gi|1402785|gb|AAC80252.1| major cold-shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|1402787|gb|AAC80253.1| major cold-shock protein [Salmonella enterica subsp. enterica
serovar Virchow]
Length = 46
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
DKG+GFITP+ DVF+H SA+ + G +L EGQ V++
Sbjct: 1 DKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAK 46
>gi|254477246|ref|ZP_05090632.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
gi|214031489|gb|EEB72324.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
Length = 171
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KG+GF+ + E G D+ LH + + + G ++ +G V + +
Sbjct: 5 RGLVKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAQVELVTHRTERG- 60
Query: 64 KYSAENL 70
A +
Sbjct: 61 -VQAVEV 66
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVFLH + +GL L G+ + ++ G+
Sbjct: 100 RVKWFDKGKGFGFANVFGRP---EDVFLHVEVLRQSGLSELQPGEALGMRVIEG-KRGRM 155
Query: 66 SAENL 70
+ E L
Sbjct: 156 AVEVL 160
>gi|331014236|gb|EGH94292.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 41
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V
Sbjct: 1 KWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQV 41
>gi|294084974|ref|YP_003551734.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664549|gb|ADE39650.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322]
Length = 181
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+K++N +GYGF+T E DDVF+H ++ G +L +GQ + + +
Sbjct: 117 VVKFFNDVRGYGFVTAENI---DDDVFVHSRVLSDCGFHSLLQGQKLLVKVDDSGRGPQV 173
Query: 66 SAENL 70
A L
Sbjct: 174 QAVRL 178
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G + WYN KGYGF+ + + ++FLHRS + GL L G V+ +N+
Sbjct: 32 KEGELVWYNERKGYGFVKIDDT-----EIFLHRSTLDRFGLIRLLTGDRVSVSLTENEHG 86
Query: 63 GKYS 66
Sbjct: 87 KVIQ 90
>gi|123301101|dbj|BAF45318.1| Y-box protein [Bombyx mori]
Length = 272
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+A + ++ +G+ V + V +
Sbjct: 40 GTVKWFNVKSGYGFINRNDTK---EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
Query: 61 AN 62
Sbjct: 97 KG 98
>gi|253575315|ref|ZP_04852653.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845312|gb|EES73322.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 109
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G ++ Y D+G+GFI E G DV H +AV G L G VT++ + D GK
Sbjct: 47 GYVRRYYDDRGFGFIGRED----GSDVHFHINAVQ--GADKLRTGDRVTFEIGE-DKRGK 99
Query: 65 YSAENLKL 72
+A+N++L
Sbjct: 100 PTAKNVRL 107
>gi|260770106|ref|ZP_05879039.1| integral membrane protein [Vibrio furnissii CIP 102972]
gi|260615444|gb|EEX40630.1| integral membrane protein [Vibrio furnissii CIP 102972]
gi|315182622|gb|ADT89535.1| hypothetical protein vfu_B01354 [Vibrio furnissii NCTC 11218]
Length = 195
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G I ++ DKGYGFIT +F+H SAV L + V++D Q D G
Sbjct: 2 KGKITRWHDDKGYGFITAPDGKSK---IFVHISAVKHRA-KRLAKNDTVSFDVEQ-DRKG 56
Query: 64 KYSAENLKL 72
+ +A N++L
Sbjct: 57 RLNAVNVEL 65
>gi|261314020|ref|ZP_05953217.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
gi|261303046|gb|EEY06543.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
Length = 150
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 80 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 135
Query: 66 SAE 68
+AE
Sbjct: 136 AAE 138
>gi|291529654|emb|CBK95240.1| cold-shock DNA-binding protein family [Eubacterium rectale
M104/1]
Length = 66
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
G +KW++ KGYGF+T E G D F+H SA+ S L VT+D D
Sbjct: 2 TGKVKWFSNRKGYGFVTGED----GQDYFVHFSAIESDKSFKTLHTNADVTFDVQVVD-- 55
Query: 63 GKYSAENLK 71
GK A +K
Sbjct: 56 GKQYAVKVK 64
>gi|148725317|emb|CAN88784.1| novel protein (zgc:55584) [Danio rerio]
Length = 102
Score = 60.8 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ EG DVF+H+S + G +L EG+ V + + ++
Sbjct: 41 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 100
Query: 61 AN 62
Sbjct: 101 KG 102
>gi|260433622|ref|ZP_05787593.1| cold shock DNA-binding domain protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417450|gb|EEX10709.1| cold shock DNA-binding domain protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 175
Score = 60.8 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + +DVFLH + +GL +L G+ + + + G+
Sbjct: 107 RVKWFDKAKGFGFANVFGRS---EDVFLHIEVLRRSGLADLQPGEALAMRVI-DGKRGRM 162
Query: 66 SAENL 70
+A+ L
Sbjct: 163 AAQVL 167
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KGYGF+ + E G D+ LH + + + G ++ +G + + D
Sbjct: 12 RGHVKWFDPSKGYGFVVSD---EGGPDILLHVNVLRNFGQSSVADGAGIEIMTHRTDRG- 67
Query: 64 KYSAENL 70
A +
Sbjct: 68 -VQAVEV 73
>gi|170031766|ref|XP_001843755.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870926|gb|EDS34309.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 247
Score = 60.8 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
G++KW+N G+GFIT +G+D+F+H+S++ + + ++ EG++V + +
Sbjct: 53 TGTVKWFNVKDGFGFITRHD---TGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVIAT 109
Query: 60 DANGK 64
G
Sbjct: 110 KVTGP 114
>gi|324511273|gb|ADY44699.1| Y-box factor [Ascaris suum]
Length = 269
Score = 60.8 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYDYVQ 58
G +KWY+ YGFI + + DVF+H++A+A + + +L EG+ V +D V+
Sbjct: 79 TGKVKWYSVRYHYGFIARDDDVAN--DVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVE 136
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 137 GKQG--PEAANVT 147
>gi|327404541|ref|YP_004345379.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
gi|327320049|gb|AEA44541.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
Length = 63
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G++K++N KG+GFI E D+F+H + + + E VTYD +N
Sbjct: 1 MNKGTVKFFNDAKGFGFIKGENE----QDIFVHATGLNQD----IRENDNVTYD-TENGR 51
Query: 62 NGKYSAENLKL 72
NG +A N+ L
Sbjct: 52 NG-LNAVNVSL 61
>gi|330503459|ref|YP_004380328.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01]
gi|328917745|gb|AEB58576.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01]
Length = 240
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K ++ KG+GFI PE G DVF H S + G V + D G
Sbjct: 7 KGRLKSWDDAKGFGFIQPEN---GGADVFAHISVMRGD--RRPQPGDDVLF-IEGRDQRG 60
Query: 64 KYSAENLKL 72
+ AE+L+L
Sbjct: 61 RPRAEHLRL 69
>gi|300709511|ref|YP_003735325.1| cold shock protein [Halalkalicoccus jeotgali B3]
gi|299123194|gb|ADJ13533.1| cold shock protein [Halalkalicoccus jeotgali B3]
Length = 64
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++N GYGFI+ + + DDVF H V G +L EGQ + +D Q
Sbjct: 1 MAKGEVDFFNDTGGYGFISTDDA---DDDVFFHMEDV---GGPDLEEGQEIEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|55820885|ref|YP_139327.1| cold shock protein A [Streptococcus thermophilus LMG 18311]
gi|55736870|gb|AAV60512.1| cold shock protein A [Streptococcus thermophilus LMG 18311]
Length = 69
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G+I W+N DKG GFI + DVF + ++ EGQ VT+D
Sbjct: 4 MNKGTINWFNADKGCGFIMADD----MQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 59
Query: 62 N 62
Sbjct: 60 G 60
>gi|302532749|ref|ZP_07285091.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
gi|302441644|gb|EFL13460.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
Length = 71
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
+ G++KW+N +KG+GFI+ + G DVF+H S + G
Sbjct: 1 MATGTVKWFNSEKGFGFISQDD---GGPDVFVHFSPIPGDG 38
>gi|225706812|gb|ACO09252.1| Calcium-regulated heat stable protein 1 [Osmerus mordax]
Length = 163
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G K ++ +G+GFITP G+D+F+H S + G + EG V+Y
Sbjct: 80 TGVCKCFSRSRGHGFITPSD---GGNDIFVHISDI--DGEYVPVEGDEVSYKICSLPPKC 134
Query: 63 GKYSAENLKLV 73
K A ++ ++
Sbjct: 135 DKVQAVDVTII 145
>gi|89076176|ref|ZP_01162533.1| Predicted membrane protein [Photobacterium sp. SKA34]
gi|89048126|gb|EAR53711.1| Predicted membrane protein [Photobacterium sp. SKA34]
Length = 204
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N KG+GFI P+ DVF H SA+ + VT+ + D
Sbjct: 1 MAQQGKIISWNQQKGFGFIAPDNGE---QDVFFHISALPDKQCR-PHIDEAVTFRIGK-D 55
Query: 61 ANGKYSAENLK 71
G+ SA +
Sbjct: 56 KKGRMSATTVT 66
>gi|292656120|ref|YP_003536017.1| cold shock protein [Haloferax volcanii DS2]
gi|291371726|gb|ADE03953.1| cold shock protein [Haloferax volcanii DS2]
Length = 64
Score = 60.4 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI+ + + DDVF H + G +L EG V +D Q
Sbjct: 1 MAKGNVDFFNDTGGYGFISTDDA---DDDVFFHMEDI---GGPDLEEGTDVEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|331240856|ref|XP_003333078.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312068|gb|EFP88659.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 367
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 4 RGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVTY 54
G K++N KG+GFI P + + G D+F+H S + S +L +G++V Y
Sbjct: 72 TGVCKFFNVGKGFGFIKDSRPEELPVLTGDPGTDIFVHYSCIVSCDAPYKSLLDGEVVEY 131
Query: 55 DYVQNDANGKYSAENLK 71
+++ +A +
Sbjct: 132 YLGRSNKG--LAALEIT 146
>gi|258510935|ref|YP_003184369.1| cold-shock DNA-binding domain-containing protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477661|gb|ACV57980.1| cold-shock DNA-binding domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 120
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA------GLFNLTEGQLVTYD 55
+ G +K + ++G+G+I E G+DV++H SA+ G L +GQLV +D
Sbjct: 1 MVEGIVKEWRDEEGFGWIRAED----GEDVWVHFSAILPHPDRFPRGYRFLRKGQLVEFD 56
Query: 56 YVQNDAN--GKYSAENLKL 72
V N + + SA N+ +
Sbjct: 57 LVTNPHSAEQRRSARNVVV 75
>gi|295425124|ref|ZP_06817829.1| cold-shock protein [Lactobacillus amylolyticus DSM 11664]
gi|295065183|gb|EFG56086.1| cold-shock protein [Lactobacillus amylolyticus DSM 11664]
Length = 68
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFIT ++ F+ +A+ G L GQ V Y Q
Sbjct: 1 MRLGTVKQFDEGSSYGFIT---DEQNHKSYFVFYTAIKEEGYKRLEVGQRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|297677568|ref|XP_002816670.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
Length = 277
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ +S DVF+H+S + +L EG+ V + + ++
Sbjct: 110 GICKWFNVRMGFGFLSMTARAGVTLDSPVDVFVHQSKLHMERFRSLKEGEAVEFTFKKSA 169
Query: 61 AN 62
Sbjct: 170 KG 171
>gi|3821925|gb|AAC69704.1| major cold shock protein [Streptococcus thermophilus]
Length = 50
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G D+F H S++ S G +L E Q V +D A N
Sbjct: 1 KGFGFITSED----GQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQRG--PQAAN 50
>gi|84515605|ref|ZP_01002967.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis
SKA53]
gi|84510888|gb|EAQ07343.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis
SKA53]
Length = 175
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++P KG+GF+ E G D+ LH + + + G ++ +G + VQ+ G
Sbjct: 13 QGQVKWFDPTKGFGFVIAE---LGGPDILLHANVLRNFGQGSVVDGSRIDL-MVQDTQRG 68
Query: 64 KYSAENLKLVPKSSN 78
+ E + + P ++
Sbjct: 69 LQAVEVISITPPHAD 83
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW++ KG+GF GS+ DDVF+H + +GL +L G+ + V +
Sbjct: 108 RVKWFDKAKGFGFANVFGSS---DDVFIHIEVLRRSGLSDLQSGEAIGLRLVDGERG 161
>gi|49474233|ref|YP_032275.1| cold shock protein [Bartonella quintana str. Toulouse]
gi|49239737|emb|CAF26119.1| Cold shock protein [Bartonella quintana str. Toulouse]
Length = 191
Score = 60.4 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ D+ LH + + G EG + + +
Sbjct: 28 GVIKWFDGSKGYGFIIPDLPNF--PDILLHVTVMRRDGFQTALEGAKIVCAVEKTERG-- 83
Query: 65 YSAENLKLVPKSS 77
+K + SS
Sbjct: 84 LKCVQVKSIDCSS 96
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + +
Sbjct: 118 ERAIVKWFNRDKGFGFLSR---GQGTEDIFVHMETLRRFGLAELRSGQVVLVRFGKGKKG 174
>gi|86740653|ref|YP_481053.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
gi|86567515|gb|ABD11324.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
Length = 141
Score = 60.4 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT-EGQLVTYDYVQND 60
+ G + ++ +GYGFI P GDD+FLH + + NL G ++ ++ + +
Sbjct: 1 MSTGKVLRFDHVRGYGFIAPSD---GGDDIFLHANDLLVE--KNLVIPGAVMEFEIEEGE 55
Query: 61 ANGKYSAENLKLVPKSS 77
K SA +++ +
Sbjct: 56 RGLKASAA--RILRSAP 70
>gi|146283892|ref|YP_001174045.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
stutzeri A1501]
gi|145572097|gb|ABP81203.1| cold-shock DNA-binding domain protein [Pseudomonas stutzeri
A1501]
Length = 235
Score = 60.1 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M RG++K +N DKG+GFI PE + G+++F+H SAV L G V + D
Sbjct: 1 MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAVHGE-RRPLVGG-RVLF-VAGRD 54
Query: 61 ANGKYSAENLKL 72
A G+ AE+++L
Sbjct: 55 AQGRLRAEHVRL 66
>gi|254511315|ref|ZP_05123382.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221535026|gb|EEE38014.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 168
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF GS+ +DVFLH + +GL +L G+ + + + G+
Sbjct: 100 RVKWFDKGKGFGFANVFGSS---EDVFLHIEVLRRSGLADLQPGEALAMRVI-DGKRGRM 155
Query: 66 SAENL 70
+A+ L
Sbjct: 156 AAQVL 160
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KGYGF+ + G D+ LH + + + G ++ +G + + D
Sbjct: 5 RGHVKWFDPAKGYGFVVSDD---GGPDILLHVNVLRNFGQSSVADGAGIEIMTHKTDRG- 60
Query: 64 KYSAENL 70
A +
Sbjct: 61 -VQAVEV 66
>gi|218961622|ref|YP_001741397.1| cold-shock domain family protein [Candidatus Cloacamonas
acidaminovorans]
gi|167730279|emb|CAO81191.1| cold-shock domain family protein [Candidatus Cloacamonas
acidaminovorans]
Length = 74
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60
+G +KW+N +KGYGFI + + F+H ++ + L L + +LVT+D ++ D
Sbjct: 6 KGKVKWFNKNKGYGFIITDD----NKEYFVHWKSIVTNSPRELKVLEQDELVTFDLMETD 61
Query: 61 ANGKYSAENL 70
A N+
Sbjct: 62 KG--IQAINI 69
>gi|254706561|ref|ZP_05168389.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
Length = 158
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G
Sbjct: 88 IVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEK-GLM 143
Query: 66 SAE 68
+AE
Sbjct: 144 AAE 146
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
KGYGFI P+ D+ LH +++ G EG + + D
Sbjct: 2 AKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 49
>gi|226371922|gb|ACO51586.1| Calcium-regulated heat stable protein 1 [Rana catesbeiana]
Length = 150
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K ++ KG+GFI PE G DVFLH S + + EG VT+
Sbjct: 66 YKGVCKCFSRSKGHGFIIPED---GGPDVFLHISDIEGEYVP--VEGDEVTFKICSIPPK 120
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 121 NEKRQAVEVVITNLAP 136
>gi|186471680|ref|YP_001862998.1| cold-shock DNA-binding domain-containing protein [Burkholderia
phymatum STM815]
gi|184197989|gb|ACC75952.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
STM815]
Length = 61
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
GF SGDD+F H S V + G +L EGQ V++D Q A N++ +
Sbjct: 7 GFWVHHTGRRSGDDLFAHFSEVQAQGFKSLQEGQRVSFDVKQGPKGK--QAANIQPI 61
>gi|195127535|ref|XP_002008224.1| GI13370 [Drosophila mojavensis]
gi|193919833|gb|EDW18700.1| GI13370 [Drosophila mojavensis]
Length = 142
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ KG+GFITP G+DVF H S + + G V Y
Sbjct: 54 MVAGVVKSFSRTKGHGFITPHD---GGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPP 108
Query: 62 N-GKYSAENLKL 72
K+ A ++++
Sbjct: 109 KFEKHQAVHVQI 120
>gi|259419058|ref|ZP_05742975.1| cold-shock DNA-binding protein family [Silicibacter sp.
TrichCH4B]
gi|259345280|gb|EEW57134.1| cold-shock DNA-binding protein family [Silicibacter sp.
TrichCH4B]
Length = 180
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KGYGFI +G D+ LH + + + G ++ +G + + D
Sbjct: 12 RGLVKWFDPAKGYGFIVCPD---NGPDILLHVNVLRNFGQSSIADGAGIEVVTHRTDRG- 67
Query: 64 KYSAEN-LKLVPKS 76
A + + P
Sbjct: 68 -VQAVEIVSITPPE 80
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVFLH + +GL ++ G+ + ++ G+
Sbjct: 107 RVKWFDKAKGFGFANVFGR---DEDVFLHVEVLRQSGLSDVQSGEALAMRVIEG-KRGRM 162
Query: 66 SAENLKLVPKSSN 78
A ++ +S+
Sbjct: 163 -AVDVLAWEAASS 174
>gi|256842894|ref|ZP_05548382.1| cold shock protein [Lactobacillus crispatus 125-2-CHN]
gi|256848732|ref|ZP_05554166.1| cold shock protein [Lactobacillus crispatus MV-1A-US]
gi|293381728|ref|ZP_06627709.1| cold-shock DNA-binding domain protein [Lactobacillus crispatus
214-1]
gi|295692698|ref|YP_003601308.1| cold shock protein [Lactobacillus crispatus ST1]
gi|312977588|ref|ZP_07789335.1| conserved domain protein [Lactobacillus crispatus CTV-05]
gi|256614314|gb|EEU19515.1| cold shock protein [Lactobacillus crispatus 125-2-CHN]
gi|256714271|gb|EEU29258.1| cold shock protein [Lactobacillus crispatus MV-1A-US]
gi|290921775|gb|EFD98796.1| cold-shock DNA-binding domain protein [Lactobacillus crispatus
214-1]
gi|295030804|emb|CBL50283.1| Cold shock protein [Lactobacillus crispatus ST1]
gi|310895327|gb|EFQ44394.1| conserved domain protein [Lactobacillus crispatus CTV-05]
Length = 67
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFI + + F+ A+ G L GQ V Y Q
Sbjct: 1 MRLGTVKQFDEGSSYGFIEDD---RNHKSYFVFYKAIKEEGYKTLQVGQRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|297824943|ref|XP_002880354.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
lyrata]
gi|297326193|gb|EFH56613.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
lyrata]
Length = 198
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GS+KW++ KG+GFITP GDD+F+H+S++ S G +L + V+ D G
Sbjct: 15 KGSVKWFDTQKGFGFITPND---GGDDLFVHQSSIRSEGFRSLAAEES-VEFEVEVDNTG 70
Query: 64 KYSAENLK 71
+ A +
Sbjct: 71 RPKAVEVS 78
>gi|161507323|ref|YP_001577277.1| cold shock protein [Lactobacillus helveticus DPC 4571]
gi|260102620|ref|ZP_05752857.1| conserved hypothetical protein [Lactobacillus helveticus DSM
20075]
gi|160348312|gb|ABX26986.1| Cold shock protein [Lactobacillus helveticus DPC 4571]
gi|260083574|gb|EEW67694.1| conserved hypothetical protein [Lactobacillus helveticus DSM
20075]
gi|323466795|gb|ADX70482.1| Cold shock protein [Lactobacillus helveticus H10]
gi|328468654|gb|EGF39648.1| cold shock protein [Lactobacillus helveticus MTCC 5463]
Length = 67
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFI + + F+ A+ G +L G V Y Q
Sbjct: 1 MRLGTVKQFDEGSSYGFIEDD---RNHKSYFVFYKAIKEEGYKSLRVGDRVQYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|1402757|gb|AAC80247.1| major cold-shock protein [Listeria grayi]
Length = 45
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI+ E G DVF+H SA+ G L EGQ VT+D ++D
Sbjct: 1 EKGFGFISRED----GSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESDR 45
>gi|112982792|ref|NP_001036897.1| Y-box protein [Bombyx mori]
gi|49532669|dbj|BAD26606.1| Y-box protein [Bombyx mori]
Length = 259
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+A + ++ +G+ V + V +
Sbjct: 40 GTVKWFNVKSGYGFINRNDTK---EDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
Query: 61 AN 62
Sbjct: 97 KG 98
>gi|117164652|emb|CAJ88198.1| putative DNA-binding protein [Streptomyces ambofaciens ATCC
23877]
Length = 172
Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I ++ +GYGFI P+ G+DVF+H + +A L G V +D + D
Sbjct: 9 GKIIRFDEFRGYGFIAPDN---GGEDVFIHVNDLAFDK-RLLGPGMKVEFDVEEGDRG-- 62
Query: 65 YSAENLKL 72
A +++
Sbjct: 63 LKASRVRI 70
>gi|85716488|ref|ZP_01047459.1| cold shock DNA binding protein [Nitrobacter sp. Nb-311A]
gi|85696677|gb|EAQ34564.1| cold shock DNA binding protein [Nitrobacter sp. Nb-311A]
Length = 77
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+RG++ +N ++G+GF+ + ++F+H S V A +L GQ + ++ +++
Sbjct: 10 YRGTVVHWNAERGFGFVQRDTDQ---REIFVHISEVDEA-YESLVLGQRIEFEIAESERK 65
Query: 63 -GKYSAENLKLV 73
G N+ +V
Sbjct: 66 PGHPKCVNVDVV 77
>gi|298209155|ref|YP_003717334.1| cold shock protein, putative DNA-binding protein [Croceibacter
atlanticus HTCC2559]
gi|83849082|gb|EAP86951.1| cold shock protein, putative DNA-binding protein [Croceibacter
atlanticus HTCC2559]
Length = 63
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K++N KG+GFIT +E+ ++ F+H S + + ++EG V +D
Sbjct: 1 MKNGRVKFFNDTKGFGFIT---DSETSEEYFVHVSGL----IDRISEGDHVAFDLKDGKK 53
Query: 62 NGKYSAENLKLV 73
+A ++++V
Sbjct: 54 G--LNAIDVRVV 63
>gi|319408547|emb|CBI82200.1| cold shock protein [Bartonella schoenbuchensis R1]
Length = 191
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KGYGFI P+ D+ LH + + G EG + + +
Sbjct: 28 GVIKWFDGSKGYGFIVPDLC--GLPDILLHVTVMRRDGFQTALEGAKIICVVKKTERG-- 83
Query: 65 YSAENLKLVPKSS 77
+K V SS
Sbjct: 84 LKCVQVKSVDLSS 96
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
R +KW++ DKG+GF++ + +D+F+H + GL L GQ+V + + +
Sbjct: 118 ERAIVKWFDRDKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVIVRFGKGEKG 174
>gi|170572609|ref|XP_001892171.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
malayi]
gi|158602705|gb|EDP39010.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
malayi]
Length = 244
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ YGFI + G+DVF+H++A+A + L L +G+ V +D VQ
Sbjct: 7 KGKVKWYSVRYHYGFIARDD--NKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQ 64
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 65 GKQG--PEAANVT 75
>gi|124267217|ref|YP_001021221.1| cold shock DNA-binding domain-containing protein [Methylibium
petroleiphilum PM1]
gi|124259992|gb|ABM94986.1| cold-shock DNA-binding domain [Methylibium petroleiphilum PM1]
Length = 203
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +K +N ++G+GFI G D+F+H A +G T GQ VT++ +
Sbjct: 1 MRLDGKLKSWNDERGFGFI---DPVHGGQDIFVHIKAF-PSGTGRPTVGQAVTFEV-ELG 55
Query: 61 ANGKYSAENLK 71
NGK A +++
Sbjct: 56 PNGKKRARSVQ 66
>gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
TM1040]
gi|99037270|gb|ABF63882.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
Length = 179
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG +KW++P KGYGFI G D+ LH + + + G ++ +G + + D
Sbjct: 12 RGLVKWFDPAKGYGFIVCPD---DGPDILLHVNVLRNFGQSSVADGAGIEVVTHRTDRG- 67
Query: 64 KYSAEN-LKLVPKS 76
A + + P
Sbjct: 68 -VQAVEIVSITPPE 80
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVFLH + +GL ++ G+ + + + G+
Sbjct: 107 RVKWFDKAKGFGFANVFGR---DEDVFLHVEVLRQSGLSDVQSGEALAMRVI-DGKRGRM 162
Query: 66 SAENLKLVPKSSN 78
A ++ +S+
Sbjct: 163 -AVDVLAWEAASS 174
>gi|1402755|gb|AAC80244.1| major cold-shock protein [Lactobacillus casei]
Length = 45
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
DKGYGFIT E G DVF+H SA+ G +L EGQ V+YD Q+D
Sbjct: 1 DKGYGFITGED----GQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDR 45
>gi|3121921|sp|Q44078|CSPA_AERHY RecName: Full=Major cold-shock protein
gi|1402731|gb|AAC80230.1| major cold-shock protein [Aeromonas hydrophila]
Length = 46
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI+P DVF+H SA+ + G L EGQ V + Q
Sbjct: 1 EKGFGFISPTD---GSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQGQK 46
>gi|237804204|ref|ZP_04591789.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331026185|gb|EGI06241.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 41
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 4/45 (8%)
Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
W+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V+
Sbjct: 1 WFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVS 41
>gi|322511335|gb|ADX06644.1| putative cold-shock protein CspD [Organic Lake phycodnavirus]
Length = 88
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
+KW+N KG+GF+ E +G + F H S + + G L G+ V+ + + D N K
Sbjct: 4 VKWFNKRKGFGFVLDE----TGTEYFCHHSDICNDGYKYLRAGEYVSGEVINMDGNKK 57
>gi|332233044|ref|XP_003265713.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A-like, partial
[Nomascus leucogenys]
Length = 362
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+ + ++ V
Sbjct: 81 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGENLNFEAVFLF 137
Query: 61 ANGKYSAENLK 71
++ A N+
Sbjct: 138 SSQGAEAANVT 148
>gi|312083329|ref|XP_003143816.1| hypothetical protein LOAG_08235 [Loa loa]
gi|307761020|gb|EFO20254.1| hypothetical protein LOAG_08235 [Loa loa]
Length = 310
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ YGFI + G+DVF+H++A+ + L L +G+ V +D V+
Sbjct: 77 KGRVKWYSVRFHYGFIARDD---KGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVE 133
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 134 GKQG--PEAANVT 144
>gi|85813673|emb|CAG44466.1| putative cold shock protein [Streptomyces rimosus subsp.
paromomycinus]
Length = 76
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
+ G +KW++ ++G G + G G DV +RSA+ LT G+ V+++ V++
Sbjct: 1 MPHGVVKWFDHERGAGLVAQTG---GGPDVLAYRSAIQGDEPARTLTTGERVSFNLVEDF 57
Query: 61 ANGKYSAENLKLVP 74
+ AEN+ +P
Sbjct: 58 EGIR--AENIYRLP 69
>gi|269217410|ref|ZP_06161264.1| cold-shock domain protein [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269213136|gb|EEZ79476.1| cold-shock domain protein [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 141
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K+++ KG+GFI + G +VF SA+ + G V +
Sbjct: 19 PTGRVKFFDEKKGFGFIAGDD----GTEVFFSGSALPVG--SRVKAGTRVEFSVADTRRG 72
Query: 63 GKYSAENLKLVPKS 76
A L + PK+
Sbjct: 73 --PQA--LTVAPKA 82
>gi|225719590|gb|ACO15641.1| Cold shock domain-containing protein C2 [Caligus clemensi]
Length = 171
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G++K++ +G+GFITP S + F+H S + + V +
Sbjct: 68 HEGTVKYFCRSRGFGFITPNKSVNDNQEFFMHISDIEGEFVP--RRNDSVQFKVCPIPPR 125
Query: 63 -GKYSAENLKLVPKSSN 78
K+ A ++++ +
Sbjct: 126 FEKFQAVQVRIINFTPE 142
>gi|254461278|ref|ZP_05074694.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2083]
gi|206677867|gb|EDZ42354.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 173
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++KW++P KG+GF+ E E G D+ LH + + + G ++ EG ++ + D
Sbjct: 11 RGAVKWFDPAKGFGFVVAE---EGGADILLHANVLRNFGQNSVAEGAVIEILSQETDRG- 66
Query: 64 KYSAENL 70
A +
Sbjct: 67 -LQAVEV 72
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF GS D+F+H + +GL +L G+ + +
Sbjct: 106 RVKWFDKGKGFGFANVFGSDA---DIFVHVEVLRRSGLADLAPGEALALRVIDGKRG--L 160
Query: 66 SAENLKLVPKS 76
A + +
Sbjct: 161 MAIEVSAWEAA 171
>gi|153872773|ref|ZP_02001567.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
gi|152070763|gb|EDN68435.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
Length = 189
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + ++ +G+GFI + + +DVF+H + +L+ GQ V +D Q D
Sbjct: 3 GIVVKFDKKRGFGFIRSDKFS---EDVFVHLKNIREQ--QSLSPGQKVEFDTEQTDKG-- 55
Query: 65 YSAENL 70
SA N+
Sbjct: 56 LSAINV 61
>gi|83942584|ref|ZP_00955045.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36]
gi|83953825|ref|ZP_00962546.1| cold shock DNA-binding domain protein [Sulfitobacter sp.
NAS-14.1]
gi|83841770|gb|EAP80939.1| cold shock DNA-binding domain protein [Sulfitobacter sp.
NAS-14.1]
gi|83846677|gb|EAP84553.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36]
Length = 169
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+KW++P KG+GF+ + G D+ LH + + + G ++ +G + + +
Sbjct: 2 VKWFDPAKGFGFVVSD---AGGPDILLHVNVLRNYGQSSVADGARIDLTVQKTERG--VQ 56
Query: 67 AENLKLVPKSS 77
A + V +
Sbjct: 57 ATQVHAVHPPA 67
Score = 58.1 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G + DD+FLH + +GL +L G+ + + + G+
Sbjct: 94 RVKWFDKSKGFGFANVFGKS---DDIFLHIEVLRQSGLSDLQPGEALALRVINGER-GQM 149
Query: 66 SAEN 69
+AE
Sbjct: 150 AAEV 153
>gi|227877332|ref|ZP_03995405.1| cold-shock protein [Lactobacillus crispatus JV-V01]
gi|227863188|gb|EEJ70634.1| cold-shock protein [Lactobacillus crispatus JV-V01]
Length = 67
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFI + + F+ A+ G L GQ V Y Q
Sbjct: 1 MRLGTVKQFDEGSSYGFIEDD---RNHKSYFVFYKAIKEEGYKTLQIGQRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|301170784|dbj|BAJ12006.1| y box protein [Samia cynthia walkeri]
Length = 139
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60
G++KW+N GYGFI + +DVF+H++A+ + ++ +G+ V + V +
Sbjct: 15 GTVKWFNVKSGYGFINRNDTK---EDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 71
Query: 61 AN 62
Sbjct: 72 KG 73
>gi|84503413|ref|ZP_01001473.1| cold shock DNA-binding domain protein [Oceanicola batsensis
HTCC2597]
gi|84388200|gb|EAQ01152.1| cold shock DNA-binding domain protein [Oceanicola batsensis
HTCC2597]
Length = 179
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N DKG+GF G DDVF+H + ++GL +L G+ V + + GK
Sbjct: 107 RVKWFNKDKGFGFANVFG---GTDDVFIHVEVLRASGLADLQPGEAVALRVI-DGRRGKM 162
Query: 66 SAEN 69
++E
Sbjct: 163 ASEV 166
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++KW++P +G+GF+ E G D+ LH + + + G ++ +G ++
Sbjct: 13 GTVKWFDPGRGFGFVVSED---GGPDILLHANVLRNFGQSSVADGAKISILAQTTQRG 67
>gi|1402759|gb|AAC80246.1| major cold-shock protein [Listeria innocua]
Length = 45
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI E GDDVF+H SA+ G +L EGQ VT+D +
Sbjct: 1 EKGFGFIEREN----GDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQR 45
>gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus]
Length = 305
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G+++W N GY FI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 60 GTVRWINVRNGYSFINRNDTK---EDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVEGE 116
Query: 61 AN 62
Sbjct: 117 KG 118
>gi|47114837|emb|CAE48342.1| unnamed protein product [Methylocystis sp. SC2]
Length = 183
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW+N KG+GF+T E +D+FLH V G+ L G V Y
Sbjct: 113 IVKWFNRMKGFGFLTR---GEGTEDIFLHMETVRRYGMTELKPGDSVLVRYGGGPKG--L 167
Query: 66 SAENLKLVPKSS 77
A ++ + S
Sbjct: 168 MAAEVRPLDAKS 179
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGF+ P+ DD+ LH + + +G+ EG V + +
Sbjct: 20 GRIKWFDVAKGYGFVVPDD---GSDDILLHVTILRRSGMQTAFEGARVVCEAQKRVKG 74
>gi|301057017|gb|ADK54842.1| transcriptional regulator [uncultured soil bacterium]
Length = 146
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
+ G + ++ +GYGFI P+ G+DVFLH + + + + + G V ++
Sbjct: 1 MASGRVVRFDGARGYGFIAPD---HGGEDVFLHVNEMLIPESYVRS---GTAVEFEVEDG 54
Query: 60 DANGKYSAENLKLVP 74
D A +++L
Sbjct: 55 DRG--LKASSVRLAE 67
>gi|256422955|ref|YP_003123608.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
2588]
gi|256037863|gb|ACU61407.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
2588]
Length = 67
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++K++N KG+GFI E S + F+H + + + + V ++ +
Sbjct: 6 QGTVKFFNETKGFGFIIHEES---DKETFVHVNGL----IHEIQADDRVEFELQEGRKG- 57
Query: 64 KYSAENLKLVP 74
+A N++ +
Sbjct: 58 -MNAVNVRRID 67
>gi|222478487|ref|YP_002564724.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222451389|gb|ACM55654.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 64
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI + + DDVF H V +L EGQ + +D +
Sbjct: 1 MATGKVDFFNDTGGYGFIETDDA---DDDVFFHMEDVEG---PDLEEGQELEFDIESSPK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ASNV 61
>gi|227893345|ref|ZP_04011150.1| cold-shock protein [Lactobacillus ultunensis DSM 16047]
gi|227864760|gb|EEJ72181.1| cold-shock protein [Lactobacillus ultunensis DSM 16047]
Length = 67
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFI + ++ F+ A+ G L G V Y Q
Sbjct: 1 MRLGTVKQFDEGSSYGFIEDD---QNHKSYFVFYKAIKEEGYKTLRVGDRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|158294527|ref|XP_315660.4| AGAP005641-PA [Anopheles gambiae str. PEST]
gi|157015604|gb|EAA11357.4| AGAP005641-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K ++ KG+GFITP GDD+F+H S + + G V+Y
Sbjct: 68 EEGKVKSFSRSKGHGFITP---NAGGDDIFVHISDIEGEYVP--LPGDEVSYRLCSIPPK 122
Query: 63 -GKYSAENLKLVPKSSN 78
K A ++++ +
Sbjct: 123 YEKVQAIHVQITHLTPE 139
>gi|325921527|ref|ZP_08183380.1| cold shock protein [Xanthomonas gardneri ATCC 19865]
gi|325547997|gb|EGD18998.1| cold shock protein [Xanthomonas gardneri ATCC 19865]
Length = 197
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++ +NPD+G+GFITP + GD+VF+H SA + G+L++++ +
Sbjct: 4 MRTHGTLTRWNPDRGFGFITPA---QPGDEVFVHISAFPRSA-DAPRIGELISFEI-EPS 58
Query: 61 ANGKYSAENL 70
+G+ A +
Sbjct: 59 KDGRQQAVRV 68
>gi|296140435|ref|YP_003647678.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
gi|296028569|gb|ADG79339.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 152
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +G+GF+ P G+DVFLH + + L G VT+D + D
Sbjct: 1 MTSGKVVHFDTQRGFGFLAPAD---GGEDVFLHVNDIDFDE-SALRPGTEVTFDVEKGDK 56
Query: 62 NGKYSAEN 69
A N
Sbjct: 57 G--LKAVN 62
>gi|259501538|ref|ZP_05744440.1| cold shock domain family protein [Lactobacillus iners DSM 13335]
gi|302191488|ref|ZP_07267742.1| cold shock protein [Lactobacillus iners AB-1]
gi|309804239|ref|ZP_07698316.1| cold shock-like protein CspG [Lactobacillus iners LactinV 11V1-d]
gi|309805465|ref|ZP_07699510.1| cold shock-like protein CspG [Lactobacillus iners LactinV 09V1-c]
gi|309806572|ref|ZP_07700572.1| cold shock-like protein CspG [Lactobacillus iners LactinV 03V1-b]
gi|309808598|ref|ZP_07702490.1| cold shock-like protein CspG [Lactobacillus iners LactinV 01V1-a]
gi|309809513|ref|ZP_07703371.1| cold shock-like protein CspG [Lactobacillus iners SPIN 2503V10-D]
gi|312871855|ref|ZP_07731939.1| cold shock-like protein CspG [Lactobacillus iners LEAF 3008A-a]
gi|312872457|ref|ZP_07732526.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2062A-h1]
gi|312874456|ref|ZP_07734486.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2052A-d]
gi|312874558|ref|ZP_07734583.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2053A-b]
gi|315653382|ref|ZP_07906304.1| cold shock domain family protein [Lactobacillus iners ATCC 55195]
gi|325911790|ref|ZP_08174194.1| cold shock-like protein CspG [Lactobacillus iners UPII 143-D]
gi|325913429|ref|ZP_08175795.1| cold shock-like protein CspG [Lactobacillus iners UPII 60-B]
gi|329921167|ref|ZP_08277689.1| cold shock-like protein CspG [Lactobacillus iners SPIN 1401G]
gi|259167056|gb|EEW51551.1| cold shock domain family protein [Lactobacillus iners DSM 13335]
gi|308163642|gb|EFO65912.1| cold shock-like protein CspG [Lactobacillus iners LactinV 11V1-d]
gi|308165116|gb|EFO67354.1| cold shock-like protein CspG [Lactobacillus iners LactinV 09V1-c]
gi|308167051|gb|EFO69230.1| cold shock-like protein CspG [Lactobacillus iners LactinV 03V1-b]
gi|308168072|gb|EFO70198.1| cold shock-like protein CspG [Lactobacillus iners LactinV 01V1-a]
gi|308170185|gb|EFO72220.1| cold shock-like protein CspG [Lactobacillus iners SPIN 2503V10-D]
gi|311089949|gb|EFQ48368.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2053A-b]
gi|311090068|gb|EFQ48482.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2052A-d]
gi|311092039|gb|EFQ50414.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2062A-h1]
gi|311092577|gb|EFQ50937.1| cold shock-like protein CspG [Lactobacillus iners LEAF 3008A-a]
gi|315489307|gb|EFU78947.1| cold shock domain family protein [Lactobacillus iners ATCC 55195]
gi|325476296|gb|EGC79458.1| cold shock-like protein CspG [Lactobacillus iners UPII 143-D]
gi|325477198|gb|EGC80344.1| cold shock-like protein CspG [Lactobacillus iners UPII 60-B]
gi|328934805|gb|EGG31296.1| cold shock-like protein CspG [Lactobacillus iners SPIN 1401G]
Length = 72
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ YGFI + +G F+ ++ +G L GQ V Y Q
Sbjct: 1 MRTGIVKQFDSRSPYGFIEDD---LTGASYFVFYKSIKESGYKRLEVGQRVRYQLAQGKK 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|311748237|ref|ZP_07722022.1| cold shock protein [Algoriphagus sp. PR1]
gi|126576729|gb|EAZ80977.1| cold shock protein [Algoriphagus sp. PR1]
Length = 63
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K+YN KG+GFI + + D+F+H + + + + + VTYD
Sbjct: 1 MFTGTVKFYNDAKGFGFIVDDETQS---DIFVHATGL----VDKVAQNDKVTYDIKDGKK 53
Query: 62 NGKYSAENLKL 72
+A N+K+
Sbjct: 54 G--PNAINVKI 62
>gi|17555742|ref|NP_499393.1| Y-box family member (cey-4) [Caenorhabditis elegans]
gi|3874932|emb|CAA97783.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence
[Caenorhabditis elegans]
gi|3880813|emb|CAA19509.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 294
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KW++ YGF+ + T+ +D F+H++A+ + L L + + V +D V+
Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 150 GLKG--PEAANVT 160
>gi|323456576|gb|EGB12443.1| hypothetical protein AURANDRAFT_61070 [Aureococcus anophagefferens]
Length = 789
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 5 GSIKWYNPD-KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ + K YGF+ P G D+F+H V L G V + Y +G
Sbjct: 596 GRVKWFDVERKQYGFLAPADH---GPDLFVHAGDVVGCARR-LAPGDAVEFAYGIQAQSG 651
Query: 64 KYSAEN-LKLVPKS 76
+ A + ++LVP +
Sbjct: 652 RPKALDVVRLVPAA 665
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 5 GSIKWYNPDKGYGFITP-------EGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYD 55
G + W++ K YG I P +G VF+H + V + G L V +
Sbjct: 451 GRVLWFDARKNYGAIQPDRPLPGCDGGDGGAPYVFVHGNDVEAGGGPGAALRTNDAVEF- 509
Query: 56 YVQNDANGKYSAENLKLVPKSS 77
G+ A ++ +V +
Sbjct: 510 CRGTCPRGRAKAAHVTVVATAP 531
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G + ++ +GFI P+ G++ FLH V G + GQ V + V++
Sbjct: 695 GVVVRFDAQHRWGFIRPDDPACQPEAGGENFFLHGLDVL-DGGGPVVAGQAVEFAVVRSA 753
Query: 61 ANGKYSAEN-LKLVPKSS 77
A + A + ++L P
Sbjct: 754 AR-RCKAVHCVRLEPPPP 770
>gi|157126269|ref|XP_001654567.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
gi|108882539|gb|EAT46764.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
Length = 192
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDYVQN 59
G++KW+N G+GFIT +G+D+F+H+S + ++ +G++V + + +
Sbjct: 35 TGTVKWFNAKDGFGFITRHD---TGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIAS 91
Query: 60 DANGK 64
G
Sbjct: 92 KVTGP 96
>gi|289828079|ref|ZP_06546191.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 45
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
+G++KW+N KG+GFITPE DVF+H SA+ + G L
Sbjct: 5 KGNVKWFNESKGFGFITPED---GSKDVFVHFSAIQTNGFKTL 44
>gi|157373787|ref|YP_001472387.1| cold-shock DNA-binding domain-containing protein [Shewanella
sediminis HAW-EB3]
gi|157316161|gb|ABV35259.1| cold-shock DNA-binding domain protein [Shewanella sediminis
HAW-EB3]
Length = 217
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++ +N +KG+GFI PE +G DVF+H SA+ + G + Y + A
Sbjct: 1 MERGTLVRWNDEKGFGFIKPEAG--NGKDVFIHISALKHMARKPMV-GDAIQY-LTEQQA 56
Query: 62 NGKYSAE 68
+GK A
Sbjct: 57 DGKVKAI 63
>gi|17507385|ref|NP_491645.1| Y-box family member (cey-2) [Caenorhabditis elegans]
gi|13384447|gb|AAK21380.1| C. elegans y-box protein 2, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 267
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ D+F+H++A+A + L L + + V +D V+
Sbjct: 67 QGKVKWYSVLRRYGFISRNDGE---KDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVE 123
Query: 59 NDANGKYSAENLK 71
NG +A N+
Sbjct: 124 G-KNGPEAA-NVT 134
>gi|58337126|ref|YP_193711.1| cold-shock protein [Lactobacillus acidophilus NCFM]
gi|227903701|ref|ZP_04021506.1| cold-shock protein [Lactobacillus acidophilus ATCC 4796]
gi|58254443|gb|AAV42680.1| putative cold-shock protein [Lactobacillus acidophilus NCFM]
gi|227868588|gb|EEJ76009.1| cold-shock protein [Lactobacillus acidophilus ATCC 4796]
Length = 67
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFI + ++ F+ A+ G +L G V Y Q
Sbjct: 1 MRLGTVKQFDDGSSYGFIEDD---KNHKSYFVFYKAIKEEGYKSLRVGDRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|3121929|sp|Q52287|CSPA_PHOPO RecName: Full=Major cold shock protein
gi|1402767|gb|AAC80250.1| major cold-shock protein [Photobacterium phosphoreum]
Length = 46
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q
Sbjct: 1 EKGFGFITQDN---GGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQK 46
>gi|238763346|ref|ZP_04624310.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638]
gi|238698445|gb|EEP91198.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638]
Length = 62
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ SA
Sbjct: 2 KWFNQSEGYGFISPHDGSL---DVYVSKTAIANTKNKSLSEGQDVEFSTYRSIHG--PSA 56
Query: 68 ENL 70
++
Sbjct: 57 ADV 59
>gi|315038058|ref|YP_004031626.1| cold shock protein [Lactobacillus amylovorus GRL 1112]
gi|325956510|ref|YP_004291922.1| cold shock protein [Lactobacillus acidophilus 30SC]
gi|312276191|gb|ADQ58831.1| cold shock protein [Lactobacillus amylovorus GRL 1112]
gi|325333075|gb|ADZ06983.1| cold shock protein [Lactobacillus acidophilus 30SC]
gi|327183338|gb|AEA31785.1| cold shock protein [Lactobacillus amylovorus GRL 1118]
Length = 67
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K ++ YGFI + ++ F+ A+ G L G V Y Q
Sbjct: 1 MRLGTVKQFDDGSSYGFIEDD---KNHKSYFVFYKAIKEEGYKTLKVGDRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|308498439|ref|XP_003111406.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
gi|308240954|gb|EFO84906.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
Length = 264
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ + DVF+H++A+A + L L + + V +D V+
Sbjct: 63 QGKVKWYSVLRRYGFISRDDGE---KDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVE 119
Query: 59 NDANGKYSAEN 69
NG +A
Sbjct: 120 G-KNGPEAANV 129
>gi|239944867|ref|ZP_04696804.1| putative DNA binding protein [Streptomyces roseosporus NRRL
15998]
gi|239991333|ref|ZP_04711997.1| putative DNA binding protein [Streptomyces roseosporus NRRL
11379]
Length = 141
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I ++ +GYGFI P+ E +DVF+H + + G+ V Y D
Sbjct: 2 TGKILRFDEVRGYGFIAPD---EGDEDVFMHANDLLEEKYLY-QAGRRVEYFLESGDKGP 57
Query: 64 KYSAENLKLVPKSS 77
K A ++LV +++
Sbjct: 58 K--AGEIRLVRQAA 69
>gi|227356797|ref|ZP_03841182.1| cold shock protein Csp [Proteus mirabilis ATCC 29906]
gi|227163087|gb|EEI48022.1| cold shock protein Csp [Proteus mirabilis ATCC 29906]
Length = 88
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYG I + D+++++ A+A+ LTEGQ V + ++ A
Sbjct: 25 GRVKWFDNNKGYGLIVAKDLE---QDIYVNKKAIANTKNKALTEGQDVEFSVIKTAAG-- 79
Query: 65 YSAENL 70
A ++
Sbjct: 80 LEAADV 85
>gi|195495012|ref|XP_002095086.1| GE19874 [Drosophila yakuba]
gi|194181187|gb|EDW94798.1| GE19874 [Drosophila yakuba]
Length = 143
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G +K ++ KG+GFITP G+DVF H S + + G V Y
Sbjct: 56 TGIVKSFSRTKGHGFITP---HAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPPKY 110
Query: 63 GKYSAENLKL 72
K+ A ++++
Sbjct: 111 EKHQAVHVQI 120
>gi|194872357|ref|XP_001973013.1| GG13577 [Drosophila erecta]
gi|190654796|gb|EDV52039.1| GG13577 [Drosophila erecta]
Length = 143
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G +K ++ KG+GFITP G+DVF H S + + G V Y
Sbjct: 56 TGIVKSFSRTKGHGFITP---HAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPPKY 110
Query: 63 GKYSAENLKL 72
K+ A ++++
Sbjct: 111 EKHQAVHVQI 120
>gi|37520057|ref|NP_923434.1| hypothetical protein gsr0488 [Gloeobacter violaceus PCC 7421]
gi|35211049|dbj|BAC88429.1| gsr0488 [Gloeobacter violaceus PCC 7421]
Length = 65
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
++W++ GYG I + +G++VFL +A+ G + V ++ Q +
Sbjct: 2 VRWFDLQAGYGAIARDD---TGEEVFLLFTAIPGEGYRTIAPSTAVHFELAQGPSG--PV 56
Query: 67 AENLKLVPK 75
A N++
Sbjct: 57 ARNVQKSEP 65
>gi|126735666|ref|ZP_01751411.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
gi|126714853|gb|EBA11719.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
Length = 190
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ S E G D+ LH + + + G ++ +G ++ VQ+ G
Sbjct: 29 GQVKWFDPTKGFGFVV---SEEGGPDILLHANVLRNYGQGSVVDGSAISI-MVQDTQRGL 84
Query: 65 YSAENLKLVPKSSN 78
+ E L + P +
Sbjct: 85 QATEVLSITPPETE 98
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+KW++ KG+GF G + +DVF+H + +GL +L G+ + V +
Sbjct: 123 RVKWFDKAKGFGFANVFG---NNEDVFVHVEVLRRSGLSDLQSGEAIGIRMVDGERG 176
>gi|322815184|gb|EFZ23897.1| mitochondrial RNA binding protein, putative [Trypanosoma cruzi]
Length = 142
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
++G + + +G+GFI + F+H SA+ + G +LT GQ V ++
Sbjct: 18 NKGKVISWMSGRGFGFIEDDTDK---KQHFVHFSALQTETGGFRSLTVGQEVEFEVA--S 72
Query: 61 ANGKYSAENLK-----LVPKSS 77
+G+ AEN+ +P
Sbjct: 73 QDGRTRAENVTAPGGSKLPSGP 94
>gi|307332445|ref|ZP_07611509.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881914|gb|EFN13036.1| cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 134
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I ++ +GYGFI P+ G+DVF+H + + G V + D
Sbjct: 1 MTTTGKILRFDEFRGYGFIAPDD---GGEDVFMHANDLLDEKHLF-QPGSKVRFVPEYGD 56
Query: 61 ANGKYSAENLKLVPKSS 77
K A ++++ +++
Sbjct: 57 KGPK--ASEVRVLERAA 71
>gi|297521145|ref|ZP_06939531.1| major cold shock protein [Escherichia coli OP50]
Length = 51
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
FITP+ DVF+H SA+ + G +L EGQ V++ +A N+
Sbjct: 1 FITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG--PAAGNVT 49
>gi|71422058|ref|XP_812012.1| mitochondrial RNA binding protein [Trypanosoma cruzi strain CL
Brener]
gi|70876741|gb|EAN90161.1| mitochondrial RNA binding protein, putative [Trypanosoma cruzi]
Length = 142
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
++G + + +G+GFI + F+H SA+ + G +LT GQ V ++
Sbjct: 18 NKGKVISWMSGRGFGFIEDDTDK---KQHFVHFSALQTETGGFRSLTVGQEVEFEVA--S 72
Query: 61 ANGKYSAENLK-----LVPKSS 77
+G+ AEN+ +P
Sbjct: 73 QDGRTRAENVTAPGGSKLPSGP 94
>gi|327404743|ref|YP_004345581.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
gi|327320251|gb|AEA44743.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
Length = 63
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G+IK++N KG+GF+ + E+ + F+H S + + + E VT+D +
Sbjct: 1 MNKGTIKFFNETKGFGFVKED---ETNKEYFVHVSGL----VDKVNENDAVTFDLEEGRK 53
Query: 62 NGKYSAENLK 71
A N+K
Sbjct: 54 G--LMAVNVK 61
>gi|219130830|ref|XP_002185558.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402966|gb|EEC42923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 297
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA----VASAGLFNL--TEGQLVTYDY 56
G +K+Y DKGYGFIT +G D+FLHR+A V L + E + V++D
Sbjct: 33 KTGKVKFYLRDKGYGFITADG--AGDGDIFLHRTAFVTHVPPEHLRHPFAREHERVSFDT 90
Query: 57 VQNDANGKYSAENLKLVPKSS 77
+ ++G+ A N+ +
Sbjct: 91 QVDASSGQTRAVNVTWINGEP 111
>gi|332638444|ref|ZP_08417307.1| Cold-shock protein [Weissella cibaria KACC 11862]
Length = 73
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ + G +K +N D G+GFI + +DVF+H SA+ + + +L G+ V VQ
Sbjct: 1 MEKIEGYVKTWNADNGFGFIE----LKGEEDVFVHFSAIETPRVRDLEVGEPVKLVVVQG 56
Query: 60 DANGKYSAENLKLVPKS 76
+ +A +K+ ++
Sbjct: 57 VRGPQAAAVEVKVTGEA 73
>gi|37675872|ref|NP_936268.1| hypothetical protein VVA0212 [Vibrio vulnificus YJ016]
gi|37200411|dbj|BAC96238.1| predicted membrane protein [Vibrio vulnificus YJ016]
Length = 198
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N +KGYGFI+ G VF H S+V + G VT++ + D
Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYR-PKIKDNVTFNVAE-D 55
Query: 61 ANGKYSAENLKLV 73
G+++AEN+ ++
Sbjct: 56 KKGRFNAENVVVL 68
>gi|3121922|sp|Q44317|CSPA_AERSA RecName: Full=Major cold-shock protein
gi|1402733|gb|AAC80231.1| major cold-shock protein [Aeromonas salmonicida]
Length = 46
Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI+P DVF+H SA+ S L EGQ V + Q
Sbjct: 1 EKGFGFISPAD---GSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQK 46
>gi|320158020|ref|YP_004190398.1| membrane protein [Vibrio vulnificus MO6-24/O]
gi|319933332|gb|ADV88195.1| membrane protein [Vibrio vulnificus MO6-24/O]
Length = 198
Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N +KGYGFI+ G VF H S+V + G VT++ + D
Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYR-PKIKDNVTFNVAE-D 55
Query: 61 ANGKYSAENLKLV 73
G+++AEN+ ++
Sbjct: 56 KKGRFNAENVVVL 68
>gi|1402771|gb|AAC80254.1| major cold-shock protein [Staphylococcus aureus RN4220]
gi|1402781|gb|AAC80256.1| major cold-shock protein [Staphylococcus intermedius]
Length = 45
Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 EKGFGFIEVEGEN----DVFVHFSAINQDGYKSLEEGQAVEFEVVEGDR 45
>gi|324518130|gb|ADY47012.1| Y-box-binding protein 2-B [Ascaris suum]
Length = 323
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
G +KWY+ YGFI + + DVF+H++A+A + L L +G+ V +D V+
Sbjct: 48 TGKVKWYSVRYHYGFIARDDDRAN--DVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVE 105
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 106 GKQG--PEAANVT 116
>gi|298113034|gb|ADI58623.1| AsuR4 [Streptomyces nodosus subsp. asukaensis]
Length = 141
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
+ G + ++ +GYGFI+P+ G+DVFLH + + + G V ++ D
Sbjct: 1 MVSGRVVRFDGTRGYGFISPD---HGGEDVFLHVNDMLIPESY--VHTGTAVEFEIEDGD 55
Query: 61 ANGKYSAENLKLVP 74
A +++L
Sbjct: 56 RG--LKASSVRLAE 67
>gi|317506969|ref|ZP_07964738.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316254727|gb|EFV14028.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 166
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYDYVQN 59
+ G + ++ +G+GF+ P+ G+DVF+H + A + L G ++ ++ +
Sbjct: 1 MSSGKLVHFDAVRGFGFVAPD---VGGEDVFIHVNDFEEAIVDERLLRPGAVLEFEVERG 57
Query: 60 DANGKYSAENLKLVPKS 76
A N++ V ++
Sbjct: 58 GRG--LKAVNVRFVREA 72
>gi|302392725|ref|YP_003828545.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
gi|302204802|gb|ADL13480.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
DSM 5501]
Length = 67
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G++KW++ +KG+GFI DDVF+H SA+A G +L EG V ++ V+ +
Sbjct: 1 MILSGTVKWFDSNKGFGFIERPDE----DDVFVHYSAIAEDGFKDLDEGAEVEFEVVEGE 56
Query: 61 ANGKYSAENLKLV 73
AEN+ +
Sbjct: 57 KG--PQAENVVKL 67
>gi|126731269|ref|ZP_01747076.1| cold shock DNA-binding domain protein [Sagittula stellata E-37]
gi|126708180|gb|EBA07239.1| cold shock DNA-binding domain protein [Sagittula stellata E-37]
Length = 175
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++P KG+GF+ + G D+ LH + + + G ++ +G L+ + D
Sbjct: 13 GKVKWFDPVKGFGFVVSD---AGGPDILLHANVLRNFGQSSVADGALIEIFVQRTDRG-- 67
Query: 65 YSAENLKLVPK 75
A + +
Sbjct: 68 VQATQVLSIEP 78
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G DDVF+H + +GL +L G+ + + + G+
Sbjct: 107 RVKWFDKAKGFGFANVFGKP---DDVFIHIEVLRRSGLSDLQPGEALAIRVI-DGRRGRM 162
Query: 66 S 66
+
Sbjct: 163 A 163
>gi|260904269|ref|ZP_05912591.1| cold shock protein [Brevibacterium linens BL2]
Length = 126
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +KW++ DKG+GF+ E G FLH S + +T+G + YD V +
Sbjct: 1 MPTGRVKWFDVDKGFGFVIAED----GSQAFLHSSVLPED--AEVTKGTRLDYDVVDSRR 54
Query: 62 NGKYSAENLK 71
A+ LK
Sbjct: 55 G----AQVLK 60
>gi|312092494|ref|XP_003147356.1| cold-shock DNA-binding domain-containing protein [Loa loa]
gi|307757478|gb|EFO16712.1| cold-shock DNA-binding domain-containing protein [Loa loa]
Length = 227
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKY 65
+N GYGFI +GDD+F+H++AV L +L +G+ V +D V+
Sbjct: 1 FNVKNGYGFINRAD---TGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQKG--P 55
Query: 66 SAENLK 71
A N+
Sbjct: 56 EAANVT 61
>gi|3831560|gb|AAC70001.1| major cold shock protein [Bifidobacterium animalis]
Length = 50
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
KG+GFIT E G DVF+H SA+ G +L +GQ V+Y+ Q+D A N
Sbjct: 1 KGFGFITGED----GQDVFVHFSAINGEGYKSLDKGQAVSYNVKQSDRG--PQAAN 50
>gi|229523137|ref|ZP_04412546.1| hypothetical protein VIF_003708 [Vibrio cholerae TM 11079-80]
gi|229339833|gb|EEO04846.1| hypothetical protein VIF_003708 [Vibrio cholerae TM 11079-80]
Length = 196
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + N KGYGFI+ VFLH S V S V ++ ++
Sbjct: 1 MIKGKVVERNDSKGYGFISALNGEL---RVFLHVSTVQSKSRR-PKVDDEVEFEVNEDQK 56
Query: 62 NGKYSAENLKLV 73
G+Y+A N+ ++
Sbjct: 57 -GRYNATNVTIL 67
>gi|27367741|ref|NP_763268.1| membrane protein [Vibrio vulnificus CMCP6]
gi|27359314|gb|AAO08258.1| membrane protein [Vibrio vulnificus CMCP6]
Length = 198
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N +KGYGFI+ G VF H S+V + G VT++ + D
Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYR-PKIKDNVTFNVAE-D 55
Query: 61 ANGKYSAENLKLV 73
G+++AEN+ ++
Sbjct: 56 KKGRFNAENVVVL 68
>gi|268574654|ref|XP_002642306.1| C. briggsae CBR-CEY-4 protein [Caenorhabditis briggsae]
gi|187025308|emb|CAP35775.1| CBR-CEY-4 protein [Caenorhabditis briggsae AF16]
Length = 286
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KW++ YGF+ E + + +D F+H++A++ + L L E + V +D V+
Sbjct: 90 KGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIVE 149
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 150 GRKG--PEAANVT 160
>gi|218196316|gb|EEC78743.1| hypothetical protein OsI_18955 [Oryza sativa Indica Group]
Length = 66
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+KW++ KG+GFIT E +D+F+ +S++ G ++ +G ++ D
Sbjct: 2 VKWFDTTKGFGFITLED---GSEDLFVRQSSLKFDGYQSINDGDVIDLSVGSGD 52
>gi|297157600|gb|ADI07312.1| putative DNA binding protein [Streptomyces bingchenggensis BCW-1]
Length = 137
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I ++ +GYGFI P+ G+DVF+H + + G V + D
Sbjct: 1 MTITGKILRFDEFRGYGFIAPDD---GGEDVFMHANDLVDEKHLF-QPGSKVEFVPEYGD 56
Query: 61 ANGKYSAENLKLVPKSS 77
K A +++V +S+
Sbjct: 57 KGPK--ASEVRIVQRSA 71
>gi|114798263|ref|YP_760667.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
gi|114738437|gb|ABI76562.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
Length = 175
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESG--DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IKW++ KGYGFI E S+E+ DV LH S + G EG + D V+ +
Sbjct: 23 GRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKERG 82
Query: 63 GKYS 66
+ +
Sbjct: 83 WQTA 86
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+N +GYGF+ +G D+F+H A AG ++ G +
Sbjct: 112 TLKWFNRTRGYGFVLRDGQET---DIFVHAVAFRKAGYEDIEPGTRIDVIIEVGAKG 165
>gi|1402751|gb|AAC80242.1| major cold-shock protein [Enterococcus faecalis]
Length = 45
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI+ E G DVF+H SA+ G L EGQ VT+D +D
Sbjct: 1 EKGFGFISRED----GSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDR 45
>gi|332240252|ref|XP_003269303.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1
[Nomascus leucogenys]
gi|332240254|ref|XP_003269304.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
[Nomascus leucogenys]
gi|332240256|ref|XP_003269305.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3
[Nomascus leucogenys]
gi|332240258|ref|XP_003269306.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4
[Nomascus leucogenys]
gi|332240260|ref|XP_003269307.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 5
[Nomascus leucogenys]
gi|332240262|ref|XP_003269308.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 6
[Nomascus leucogenys]
gi|332240264|ref|XP_003269309.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 7
[Nomascus leucogenys]
gi|332240266|ref|XP_003269310.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 8
[Nomascus leucogenys]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|311251533|ref|XP_003124655.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1
[Sus scrofa]
gi|311251535|ref|XP_003124658.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4
[Sus scrofa]
gi|311251537|ref|XP_003124656.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
[Sus scrofa]
Length = 146
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 62 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 116
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 117 NEKLQAVEVVITHLAP 132
>gi|311251531|ref|XP_003124657.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3
[Sus scrofa]
Length = 183
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 99 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 153
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 154 NEKLQAVEVVITHLAP 169
>gi|296224861|ref|XP_002758248.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
jacchus]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|296219544|ref|XP_002755926.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
jacchus]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|301768643|ref|XP_002919738.1| PREDICTED: calcium-regulated heat stable protein 1-like [Ailuropoda
melanoleuca]
gi|281342656|gb|EFB18240.1| hypothetical protein PANDA_008393 [Ailuropoda melanoleuca]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|149725937|ref|XP_001492855.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
24kDa [Equus caballus]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|109127552|ref|XP_001102514.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
[Macaca mulatta]
gi|109127554|ref|XP_001102603.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
[Macaca mulatta]
gi|109127556|ref|XP_001102694.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
[Macaca mulatta]
gi|297283445|ref|XP_002802430.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
gi|297283448|ref|XP_002802431.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
gi|297283450|ref|XP_002802432.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
gi|297283452|ref|XP_002802433.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|4583307|gb|AAD25021.1|AF115345_1 calcium-regulated heat stable protein CRHSP-24 [Homo sapiens]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|74213976|dbj|BAE29409.1| unnamed protein product [Mus musculus]
Length = 148
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 64 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 118
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 119 NEKLQAVEVVITHLAP 134
>gi|109715854|ref|NP_001035941.1| calcium-regulated heat stable protein 1 [Homo sapiens]
gi|109715858|ref|NP_055131.2| calcium-regulated heat stable protein 1 [Homo sapiens]
gi|114660916|ref|XP_001137922.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 6 [Pan
troglodytes]
gi|114660918|ref|XP_001138007.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7 [Pan
troglodytes]
gi|114660920|ref|XP_001137407.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 1 [Pan
troglodytes]
gi|114660922|ref|XP_001137655.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Pan
troglodytes]
gi|114660924|ref|XP_001137742.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Pan
troglodytes]
gi|114660926|ref|XP_523291.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 9 [Pan
troglodytes]
gi|114660928|ref|XP_001137575.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Pan
troglodytes]
gi|114660930|ref|XP_001138086.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8 [Pan
troglodytes]
gi|114660932|ref|XP_001137823.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 5 [Pan
troglodytes]
gi|332845244|ref|XP_003315008.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|332845246|ref|XP_003315009.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|332845248|ref|XP_003315010.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|332845251|ref|XP_003315011.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
troglodytes]
gi|41016932|sp|Q9Y2V2|CHSP1_HUMAN RecName: Full=Calcium-regulated heat stable protein 1; AltName:
Full=Calcium-regulated heat-stable protein of 24 kDa;
Short=CRHSP-24
gi|315364426|pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24
gi|315364427|pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24
gi|315364428|pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24
gi|315364429|pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24
gi|13097198|gb|AAH03366.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
gi|82568913|gb|AAI08284.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
gi|119605602|gb|EAW85196.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|119605603|gb|EAW85197.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|119605604|gb|EAW85198.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|119605605|gb|EAW85199.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
sapiens]
gi|189053098|dbj|BAG34720.1| unnamed protein product [Homo sapiens]
gi|190689713|gb|ACE86631.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
construct]
gi|190691077|gb|ACE87313.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
construct]
gi|307686115|dbj|BAJ20988.1| calcium regulated heat stable protein 1, 24kDa [synthetic
construct]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|13385290|ref|NP_080097.1| calcium-regulated heat stable protein 1 [Mus musculus]
gi|309264712|ref|XP_003086339.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus
musculus]
gi|41016923|sp|Q9CR86|CHSP1_MOUSE RecName: Full=Calcium-regulated heat stable protein 1; AltName:
Full=Calcium-regulated heat-stable protein of 24 kDa;
Short=CRHSP-24
gi|15778558|gb|AAL07470.1|AF414101_1 calcineurin substrate CRHSP-24 [Mus musculus]
gi|12833143|dbj|BAB22408.1| unnamed protein product [Mus musculus]
gi|12834885|dbj|BAB23077.1| unnamed protein product [Mus musculus]
gi|12836086|dbj|BAB23495.1| unnamed protein product [Mus musculus]
gi|15029979|gb|AAH11225.1| Calcium regulated heat stable protein 1 [Mus musculus]
gi|56541222|gb|AAH86754.1| Calcium regulated heat stable protein 1 [Mus musculus]
gi|74140430|dbj|BAE42365.1| unnamed protein product [Mus musculus]
gi|74150621|dbj|BAE25463.1| unnamed protein product [Mus musculus]
gi|74196650|dbj|BAE34427.1| unnamed protein product [Mus musculus]
gi|74199323|dbj|BAE33186.1| unnamed protein product [Mus musculus]
gi|74208059|dbj|BAE29139.1| unnamed protein product [Mus musculus]
gi|74213308|dbj|BAE41777.1| unnamed protein product [Mus musculus]
gi|74214291|dbj|BAE40388.1| unnamed protein product [Mus musculus]
gi|74222561|dbj|BAE38151.1| unnamed protein product [Mus musculus]
gi|148664880|gb|EDK97296.1| mCG123718 [Mus musculus]
gi|148703087|gb|EDL35034.1| mCG1049436 [Mus musculus]
Length = 148
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 64 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 118
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 119 NEKLQAVEVVITHLAP 134
>gi|22758142|ref|NP_690003.1| calcium-regulated heat stable protein 1 [Rattus norvegicus]
gi|41016763|sp|Q9WU49|CHSP1_RAT RecName: Full=Calcium-regulated heat stable protein 1; AltName:
Full=Calcium-regulated heat-stable protein of 24 kDa;
Short=CRHSP-24
gi|4583309|gb|AAD25022.1|AF115346_1 calcium-regulated heat stable protein CRHSP-24 [Rattus sp.]
gi|49522734|gb|AAH71173.1| Calcium regulated heat stable protein 1 [Rattus norvegicus]
gi|149042602|gb|EDL96239.1| calcium regulated heat stable protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 147
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|304385163|ref|ZP_07367509.1| CspA family cold shock transcriptional regulator [Pediococcus
acidilactici DSM 20284]
gi|304329357|gb|EFL96577.1| CspA family cold shock transcriptional regulator [Pediococcus
acidilactici DSM 20284]
Length = 73
Score = 58.1 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G++ ++ KGYGFI + G+ F+H SAV S L E ++V +
Sbjct: 5 ETGTVTSFDKTKGYGFIELDN----GEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPKG 60
Query: 63 GKYSAENL 70
A +
Sbjct: 61 --LVAVKV 66
>gi|308497891|ref|XP_003111132.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
gi|308240680|gb|EFO84632.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
Length = 263
Score = 58.1 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ E DVF+H++A+A + L L + + V +D V+
Sbjct: 63 QGKVKWYSVLRRYGFISREDGE---KDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVE 119
Query: 59 NDANGKYSAENLK 71
NG +A N+
Sbjct: 120 G-KNGPEAA-NVT 130
>gi|224070003|ref|XP_002194726.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
Length = 152
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+F+H S + + G VTY
Sbjct: 68 YKGVCKCFCRSKGHGFITPAD---GGPDIFVHISDIEGEYVP--VAGDEVTYKMCTIPPK 122
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 123 NEKLQAVEVVITHLAP 138
>gi|110636506|ref|YP_676713.1| cold-shock DNA-binding protein family protein [Cytophaga
hutchinsonii ATCC 33406]
gi|110279187|gb|ABG57373.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii
ATCC 33406]
Length = 63
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
++ G++K++N KG+GFI + S ++F+H S + +T+ V ++ V+
Sbjct: 1 MNTGTVKFFNETKGFGFI---LDSASNKEIFVHVSGLKE----QITKDDKVQFEIVEGKK 53
Query: 62 NGKYSAENLKLV 73
+A +K +
Sbjct: 54 G--VNAVEVKKI 63
>gi|47216902|emb|CAG02074.1| unnamed protein product [Tetraodon nigroviridis]
Length = 151
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G K ++ KG+GFITP G D+F+H S + + EG V+Y
Sbjct: 69 TGVCKCFSRSKGHGFITPSD---GGKDIFVHISDIEGEYVP--IEGDEVSYKICSIPPKC 123
Query: 64 K-YSAENLKL 72
+ A + +
Sbjct: 124 QAVQAVEVTI 133
>gi|242246995|ref|NP_001156264.1| calcium-regulated heat stable protein 1 [Acyrthosiphon pisum]
gi|239789112|dbj|BAH71202.1| ACYPI008400 [Acyrthosiphon pisum]
Length = 135
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G +K++ KG+GFITP+ D F+H S + L G V Y
Sbjct: 55 GKVKYFCKSKGHGFITPDN---GDPDTFVHISDIEGE-FVPL-PGDTVHYRLCPIPPKLE 109
Query: 64 KYSAENLKLV 73
K A ++++V
Sbjct: 110 KCQAVHVEIV 119
>gi|83591523|ref|YP_425275.1| cold-shock DNA-binding protein family protein [Rhodospirillum
rubrum ATCC 11170]
gi|83574437|gb|ABC20988.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
11170]
Length = 882
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++K Y+P KG G+I P+G G D+ + ++ + + G+ L + V + D G
Sbjct: 819 RGTVKHYDPIKGRGYIIPDG---KGSDILIEKAVLKACGMGRLKKNDRVV--VITKDQGG 873
Query: 64 KYSAENLK 71
K A +++
Sbjct: 874 KPVAIDVR 881
>gi|167946065|ref|ZP_02533139.1| Cold-shock DNA-binding protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 61
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
G++KW++ KGYGFI E G D+F+H A+ G +L +G
Sbjct: 1 TGTVKWFDSGKGYGFIERE----GGKDLFVHFRAIVGEGHVSLEDG 42
>gi|313125894|ref|YP_004036164.1| cold-shock DNA-binding protein family [Halogeometricum
borinquense DSM 11551]
gi|312292259|gb|ADQ66719.1| cold-shock DNA-binding protein family [Halogeometricum
borinquense DSM 11551]
Length = 64
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI+ + + DDVF H + G +L EG V ++
Sbjct: 1 MAKGNVDFFNDTGGYGFISTDDA---DDDVFFHMEDI---GGEDLEEGTDVEFEIEDAPK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|149176013|ref|ZP_01854630.1| Cold-shock DNA-binding domain [Planctomyces maris DSM 8797]
gi|148845167|gb|EDL59513.1| Cold-shock DNA-binding domain [Planctomyces maris DSM 8797]
Length = 195
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I ++ +KG+GFI+ S VF+H SA + + G V+Y+ +
Sbjct: 1 MRSQGKITDWDDEKGFGFIS---SQNDDSSVFVHISAFSGSARR-PQAGDPVSYETAHEE 56
Query: 61 ANGKYSAENLK 71
NGK AEN++
Sbjct: 57 -NGKVRAENVR 66
>gi|257386410|ref|YP_003176183.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
gi|257168717|gb|ACV46476.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
Length = 64
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + DDVF H V G +L EG V +D Q D
Sbjct: 1 MANGTVDFFNDTGGYGFIETEDA---DDDVFFHMEDV---GGPDLEEGTDVEFDIEQADK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|239834349|ref|ZP_04682677.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
gi|239822412|gb|EEQ93981.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
Length = 69
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 19 ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
I PE D F+H SAV AG+ L EGQ V+++ V + +GK +A+NL+ +
Sbjct: 18 IQPED---GSPDEFVHISAVERAGMHTLNEGQKVSFELVADRRSGKKAADNLQAL 69
>gi|254439666|ref|ZP_05053160.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter
antarcticus 307]
gi|198255112|gb|EDY79426.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter
antarcticus 307]
Length = 181
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ KG+GFI + G D+ LH + + + G ++ +G + Q +
Sbjct: 17 GHIKWFDAVKGFGFILVQD---GGADILLHANVLRNFGQSSVADGTGIEVWVAQTERG-- 71
Query: 65 YSAENL 70
A +
Sbjct: 72 LQAVEI 77
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G DVF+H + AGL +L G+ + +Q G
Sbjct: 111 RVKWFDKGKGFGFANVFG---DDADVFVHNEVLRLAGLADLFSGEAIALRAMQG-KRGLM 166
Query: 66 SAENL 70
+AE L
Sbjct: 167 AAEVL 171
>gi|3121931|sp|Q53984|CSPA_STRDY RecName: Full=Major cold shock protein
gi|1402775|gb|AAC80257.1| major cold-shock protein [Streptococcus dysgalactiae]
Length = 45
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 1 EKGFGFISTEN----GQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 45
>gi|296225904|ref|XP_002758696.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
Length = 207
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+GF++ ST + DVF+H+S + G +L + + V + + ++
Sbjct: 42 GICKWFNVRMGFGFLSMTASTGVALDPAVDVFMHQSKLHMEGFRSLKKDEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|284163722|ref|YP_003402001.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284013377|gb|ADB59328.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 64
Score = 57.7 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI + ++ +DVF H V G +L EG + +D Q
Sbjct: 1 MAKGNVDFFNDTGGYGFI---DTEDADEDVFFHMEDV---GGPDLEEGTEIEFDIEQAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|197284614|ref|YP_002150486.1| cold shock protein [Proteus mirabilis HI4320]
gi|194682101|emb|CAR41685.1| putative cold shock protein [Proteus mirabilis HI4320]
Length = 71
Score = 57.7 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ +KGYG I + D+++++ A+A+ LTEGQ V + ++ A
Sbjct: 8 GRVKWFDNNKGYGLIVAKDLE---QDIYVNKKAIANTKNKALTEGQDVEFSVIKTAAG-- 62
Query: 65 YSAENL 70
A ++
Sbjct: 63 LEAADV 68
>gi|331009020|gb|EGH89076.1| cold shock domain-containing protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 53
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A+ ++
Sbjct: 1 FGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQKG--MQADEVQ 50
>gi|32473251|ref|NP_866245.1| cold shock protein scoF [Rhodopirellula baltica SH 1]
gi|32397930|emb|CAD73931.1| probable cold shock protein scoF [Rhodopirellula baltica SH 1]
gi|327540425|gb|EGF27010.1| Cold shock, CspA [Rhodopirellula baltica WH47]
Length = 65
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+IK DKG+GFI T D+F H + V A L EGQ VTY +
Sbjct: 1 MAEGTIKRL-TDKGFGFI----DTGGPKDLFFHCTNVEGASYDELQEGQKVTYTEGRGPK 55
Query: 62 NGKYSAENLKL 72
AEN+
Sbjct: 56 G--PCAENVTP 64
>gi|288961931|ref|YP_003452241.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
gi|288914211|dbj|BAI75697.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
Length = 204
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
++KW+ P+KG+GF+ + FLH S +A+A L N EG V D Q
Sbjct: 10 TATVKWFKPEKGFGFVRLAD---GSGEAFLHASVLAAASLPNPVEGTTVVCDLAQGAKGP 66
Query: 64 KYSAEN 69
+ A +
Sbjct: 67 QVVAIH 72
Score = 41.6 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++WYN D G I P E G V+ R+ + +GL + +G+ V Y V ++
Sbjct: 138 MAYGTVRWYNLDSQSGLIEP---WEDGATVYFDRATLRQSGLDIVADGEDVRYLAVGSE- 193
Query: 62 NGKYSAENLKLV 73
A+ ++L+
Sbjct: 194 -DAPVAQRVELI 204
>gi|1402761|gb|AAC80245.1| major cold-shock protein [Lactococcus lactis subsp. cremoris]
gi|1402777|gb|AAC80255.1| major cold-shock protein [Staphylococcus epidermidis]
Length = 45
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 EKGFGFIEVEGEN----DVFVHFSAINQEGYKSLEEGQSVEFEVVEGDR 45
>gi|86136205|ref|ZP_01054784.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193]
gi|85827079|gb|EAQ47275.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193]
Length = 463
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
+G IK + DKG+GFI +G + +DVF H + V + + G++V +D ++
Sbjct: 2 QGKIKAFIHDKGFGFIEVDGQS---EDVFFHITTVKDSSVR-CAVGEIVDFDAAESKRKP 57
Query: 63 GKYSAENLKL 72
G A N++L
Sbjct: 58 GTLEARNVRL 67
>gi|225712740|gb|ACO12216.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
gi|225713682|gb|ACO12687.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
gi|290561012|gb|ADD37908.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus
salmonis]
Length = 188
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +K++ +G+GFITP + F+H S + + V +
Sbjct: 85 HEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVP--RRDDQVKFKVCPIPPR 142
Query: 63 -GKYSAENLKLVPKSSN 78
K+ A ++++ +
Sbjct: 143 FEKFQAVQVRIINFTPE 159
>gi|124003277|ref|ZP_01688127.1| conserved domain protein [Microscilla marina ATCC 23134]
gi|123991375|gb|EAY30806.1| conserved domain protein [Microscilla marina ATCC 23134]
Length = 64
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +K++ DKGYGFIT +G+D+F H S L E VTY+ +
Sbjct: 1 MNKGVVKFFKEDKGYGFITNSD---TGEDIFFHVSDTQ----DQLFENDNVTYEETRGKK 53
Query: 62 NGKYSAENLKL 72
A ++KL
Sbjct: 54 G--MQATDVKL 62
>gi|90578025|ref|ZP_01233836.1| Predicted membrane protein [Vibrio angustum S14]
gi|90441111|gb|EAS66291.1| Predicted membrane protein [Vibrio angustum S14]
Length = 204
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N KG+GFI P+ DVF H SA+ + +T+ + D
Sbjct: 1 MAQQGKIISWNQQKGFGFIAPDNGE---QDVFFHVSALPDKQCR-PRINEAITFCIGK-D 55
Query: 61 ANGKYSAENLK 71
G+ SA +
Sbjct: 56 KKGRMSATTVT 66
>gi|114051954|ref|NP_001039416.1| calcium-regulated heat stable protein 1 [Bos taurus]
gi|84201642|gb|AAI11638.1| Calcium regulated heat stable protein 1, 24kDa [Bos taurus]
gi|296473437|gb|DAA15552.1| calcium regulated heat stable protein 1, 24kDa [Bos taurus]
Length = 147
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--MEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 118 NEKLQAVEVVITHLAP 133
>gi|149409245|ref|XP_001506560.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 3 [Ornithorhynchus anatinus]
Length = 154
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 70 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 124
Query: 62 NGKYSAENLKL 72
N K A + +
Sbjct: 125 NEKLQAVEVVI 135
>gi|104773833|ref|YP_618813.1| cold shock protein B [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116513840|ref|YP_812746.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|103422914|emb|CAI97576.1| Cold shock protein B [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116093155|gb|ABJ58308.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325125497|gb|ADY84827.1| Putative cold-shock protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 69
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K + +GFI + ++ F+ +A+ G L GQ V Y Q
Sbjct: 1 MRTGLVKQFAEKASFGFIEDD---QNHKSYFVFYTAIKEEGYKRLEVGQRVRYQLAQGKH 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|195328232|ref|XP_002030820.1| GM25657 [Drosophila sechellia]
gi|195590920|ref|XP_002085192.1| GD14664 [Drosophila simulans]
gi|194119763|gb|EDW41806.1| GM25657 [Drosophila sechellia]
gi|194197201|gb|EDX10777.1| GD14664 [Drosophila simulans]
Length = 143
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G +K ++ KG+GFITP G+DVF H S + + G V Y
Sbjct: 56 TGMVKSFSRTKGHGFITP---NAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPPKY 110
Query: 63 GKYSAENLKL 72
K+ A ++++
Sbjct: 111 EKHQAVHVQI 120
>gi|1402765|gb|AAC80248.1| major cold-shock protein [Pediococcus pentosaceus]
Length = 45
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI EG DVF+H SA+ G +L EGQ V ++ V+ D
Sbjct: 1 EKGFGFIEVEGEN----DVFVHVSAINQDGYKSLEEGQSVEFEVVEGDR 45
>gi|21356601|ref|NP_648920.1| CG9705, isoform A [Drosophila melanogaster]
gi|24665520|ref|NP_730197.1| CG9705, isoform B [Drosophila melanogaster]
gi|75027588|sp|Q9VVA0|Y9705_DROME RecName: Full=Cold shock domain-containing protein CG9705
gi|7294059|gb|AAF49414.1| CG9705, isoform A [Drosophila melanogaster]
gi|16648430|gb|AAL25480.1| LD47312p [Drosophila melanogaster]
gi|23093318|gb|AAN11740.1| CG9705, isoform B [Drosophila melanogaster]
gi|220956110|gb|ACL90598.1| CG9705-PA [synthetic construct]
Length = 143
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G +K ++ KG+GFITP G+DVF H S + + G V Y
Sbjct: 56 TGMVKSFSRTKGHGFITP---NAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPPKY 110
Query: 63 GKYSAENLKL 72
K+ A ++++
Sbjct: 111 EKHQAVHVQI 120
>gi|261327789|emb|CBH10766.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 505
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 44/120 (36%)
Query: 1 MVH------RGSIKWYNPDKGYGFITP----------------EGSTESGD--------- 29
M++ G +K YNP +G+GF+T G
Sbjct: 207 MMYGLGEWYEGIVKRYNPMRGFGFLTATHHLQVTSPSGGSGTFSDGNADGRSRQQQQATP 266
Query: 30 -------------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
DVF+H+S + G L+ G V + + A +++L+ +
Sbjct: 267 PQPTLERTPVAVGDVFVHQSYIRMHGFRALSAGDRVAFRVGKLPGKDANQAVSVQLLATA 326
>gi|213512442|ref|NP_001133414.1| cold shock domain-containing protein C2 [Salmo salar]
gi|209153912|gb|ACI33188.1| Cold shock domain-containing protein C2 [Salmo salar]
Length = 159
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K + +G+GFI P GDD+F+H S + + EG VTY + N
Sbjct: 72 KGVCKSFCRSQGHGFIRPTN---GGDDIFVHISDIEGEYVP--VEGDEVTYKVSRIPPKN 126
Query: 63 GKYSAENLKLV 73
K A +K+V
Sbjct: 127 LKIQAVEVKIV 137
>gi|72388354|ref|XP_844601.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62360097|gb|AAX80518.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801134|gb|AAZ11042.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 504
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 44/120 (36%)
Query: 1 MVH------RGSIKWYNPDKGYGFITP----------------EGSTESGD--------- 29
M++ G +K YNP +G+GF+T G
Sbjct: 206 MMYGLGEWYEGIVKRYNPMRGFGFLTATHHLQVTSPSGGSGTFSDGNADGRSQQQQQTTP 265
Query: 30 -------------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
DVF+H+S + G L+ G V + + A +++L+ +
Sbjct: 266 PQPTLERTPVAVGDVFVHQSYIRMHGFRALSAGDRVAFRVGKLPGKDANQAVSVQLLATA 325
>gi|290463071|gb|ADD24583.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus
salmonis]
Length = 179
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +K++ +G+GFITP + F+H S + + V +
Sbjct: 85 HEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVP--RRDDQVKFKVCPIPPR 142
Query: 63 -GKYSAENLKLV 73
K+ A ++++
Sbjct: 143 FEKFQAVQVRII 154
>gi|17508335|ref|NP_491631.1| Y-box family member (cey-3) [Caenorhabditis elegans]
gi|1707071|gb|AAB37828.1| C.elegans y-box protein 3 [Caenorhabditis elegans]
Length = 265
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ DVF+H++A++ + L L + + V +D V
Sbjct: 65 QGKVKWYSVLRRYGFISRSDGE---KDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLV- 120
Query: 59 NDANGKYSAENLK 71
+ NG +A N+
Sbjct: 121 DGKNGPEAA-NVT 132
>gi|149250840|ref|XP_001474936.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus
musculus]
Length = 148
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 64 YKGVCKCFCRSKGHGFITPGD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 118
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 119 NEKLQAVEVVITHLAP 134
>gi|118098085|ref|XP_414938.2| PREDICTED: hypothetical protein [Gallus gallus]
Length = 152
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFI+P G D+F+H S + + G VTY
Sbjct: 68 YKGVCKCFCRSKGHGFISPAD---GGPDIFVHISDIEGEYVP--VSGDEVTYKVCTIPPK 122
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 123 NEKLQAVEVVITHLAP 138
>gi|157093143|gb|ABV22226.1| cold shock protein-like [Karlodinium micrum]
gi|157093145|gb|ABV22227.1| cold shock protein-like [Karlodinium micrum]
Length = 210
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G IK + KGYGFIT + G D+F +S V+ L L+ Q T+ D
Sbjct: 73 YKGRIKSFVQQKGYGFITCDA--LQGQDIFFMKSDVSERALPILSANQDCTFTLHLGDRG 130
Query: 63 GKYSAENLKLVPKSSN 78
A+++ LV + N
Sbjct: 131 --PQAKDITLVGAAGN 144
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ G++K YN KG+GF+ +G DVFL + G ++ G +
Sbjct: 1 MATRVGTVKSYNVHKGWGFVEC-----NGTDVFLMHKEL---GGKVVSPGDKLKLTITTG 52
Query: 60 DANGKYSAENLKLVPKSSN 78
+ GK A N+ ++ +
Sbjct: 53 EK-GKPQASNVSVISSAGE 70
>gi|195014627|ref|XP_001984048.1| GH16224 [Drosophila grimshawi]
gi|193897530|gb|EDV96396.1| GH16224 [Drosophila grimshawi]
Length = 142
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G +K ++ KG+GFITP G G+DVF H S + + EG V Y
Sbjct: 57 GVVKSFSRTKGHGFITPNG---GGEDVFCHVSDIEGEYVP--MEGDEVKYRLCAIPPKFE 111
Query: 64 KYSAENLKL 72
K+ A ++ +
Sbjct: 112 KHQAVHVHI 120
>gi|149176125|ref|ZP_01854741.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM
8797]
gi|148844992|gb|EDL59339.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM
8797]
Length = 66
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G IK D+G+GFI E D+F H S V L L EGQ+V Y+ Q
Sbjct: 1 MPQGKIKRIVSDRGFGFIEGERG-----DLFFHYSEVQGVTLEELQEGQMVEYEVGQGRK 55
Query: 62 NGKYSAENLKLVP 74
A +K+V
Sbjct: 56 G--PCATGVKVVD 66
>gi|91789211|ref|YP_550163.1| cold-shock DNA-binding protein family protein [Polaromonas sp.
JS666]
gi|91698436|gb|ABE45265.1| cold-shock DNA-binding protein family [Polaromonas sp. JS666]
Length = 193
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++K +N ++G GFI + + G ++F+H SA G G+ ++++ + D
Sbjct: 6 MRFDGTLKKWNAERGLGFIVAD---QGGQEIFVHISAFPRDG-RLPAVGEPLSFEV-EPD 60
Query: 61 ANGKYSAENL 70
+GK A +
Sbjct: 61 RDGKKCAVRI 70
>gi|149176767|ref|ZP_01855378.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
gi|148844408|gb|EDL58760.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
Length = 65
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+IK KG+GFI TESG D+F H S + L EGQ V++ + +
Sbjct: 1 MAEGTIKKV-TQKGFGFI----DTESGKDLFFHSSNLEGVSFEQLYEGQRVSFTEGRGEK 55
Query: 62 NGKYSAENLKLV 73
+ AEN+K +
Sbjct: 56 GPR--AENVKPI 65
>gi|146307203|ref|YP_001187668.1| hypothetical protein Pmen_2176 [Pseudomonas mendocina ymp]
gi|145575404|gb|ABP84936.1| protein of unknown function DUF1294 [Pseudomonas mendocina ymp]
Length = 240
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G ++ ++ KG+GFI P+ G +VF H SA+ G V + D G
Sbjct: 7 KGRLRSWDDAKGFGFIQPQD---GGAEVFAHISAMRGD--RRPQPGDEVLF-VAGRDPRG 60
Query: 64 KYSAENLKL 72
+ AE+L+L
Sbjct: 61 RPRAEHLRL 69
>gi|282866184|ref|ZP_06275231.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
gi|282558968|gb|EFB64523.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
Length = 143
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI PE G+DVF+H + + + G +V ++ D
Sbjct: 1 MAAGRVIRFDGMRGYGFIAPE---HGGEDVFMHVNDLLIPE-SAVRAGLMVEFEIEDGDR 56
Query: 62 NGKYSAENLKLVPKS 76
A ++L ++
Sbjct: 57 G--LKASEVRLASEA 69
>gi|189066655|dbj|BAG36202.1| unnamed protein product [Homo sapiens]
Length = 153
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
+ +G K ++ +G+GFITPE +D+F+H S + + EG VTY
Sbjct: 68 MFKGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPP 122
Query: 61 ANGKYSAENLKLVPKSS 77
N K+ A + L +
Sbjct: 123 KNQKFQAVEVVLTQLAP 139
>gi|1402737|gb|AAC80232.1| major cold-shock protein [Bacillus cereus]
Length = 45
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q +
Sbjct: 1 EKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 45
>gi|12862280|dbj|BAB32397.1| unnamed protein product [Mus musculus]
gi|148685263|gb|EDL17210.1| mCG147570 [Mus musculus]
Length = 199
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
G++K + GYGFI + +D+F+H++A+ L ++ +G+ +D V+ +
Sbjct: 55 GTVKGFKVRNGYGFINRNDTK---EDIFVHQTAIKKNNPRKYLRSVGDGETEEFDVVEGE 111
Query: 61 ANGKYSAENLK 71
+ A N+
Sbjct: 112 SG--AEAANVT 120
>gi|195376475|ref|XP_002047022.1| GJ13199 [Drosophila virilis]
gi|194154180|gb|EDW69364.1| GJ13199 [Drosophila virilis]
Length = 142
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G +K ++ KG+GFITP G G+DVF H S + + G V Y
Sbjct: 57 GVVKSFSRTKGHGFITPHG---GGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPPKFE 111
Query: 64 KYSAENLKL 72
K+ A ++++
Sbjct: 112 KHQAVHVQI 120
>gi|73540243|ref|YP_294763.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
JMP134]
gi|72117656|gb|AAZ59919.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
Length = 195
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 1 MVHR---GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
+++ G++K +N DKG+GFI P G D+F+H S G G+ +T+ V
Sbjct: 7 LMNTRISGTLKSWNKDKGFGFIAPSN---GGRDIFVHISDYPRQG-GMPKIGESLTF-LV 61
Query: 58 QNDANGKYSAENLK 71
+ +GK A N++
Sbjct: 62 TLNQDGKNKAINVQ 75
>gi|1402739|gb|AAC80233.1| major cold-shock protein [Bacillus subtilis]
Length = 45
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 EKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNR 45
>gi|87308022|ref|ZP_01090164.1| probable cold shock protein scoF [Blastopirellula marina DSM
3645]
gi|87289104|gb|EAQ80996.1| probable cold shock protein scoF [Blastopirellula marina DSM
3645]
Length = 65
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+IK DKG+GFI T D+F H A+ +L EGQ VT+ Q
Sbjct: 1 MADGTIKKL-TDKGFGFIN----TGGSKDLFFHSKALQGVSFDDLHEGQNVTFTEAQGPK 55
Query: 62 NGKYSAENLKL 72
AEN++
Sbjct: 56 G--PCAENVRP 64
>gi|149178825|ref|ZP_01857406.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
gi|148842366|gb|EDL56748.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
Length = 65
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+IK +KG+GFI + D+F H S++ L EGQ V ++ ++D
Sbjct: 1 MATGTIKKI-TEKGFGFIN-----DGQQDIFFHLSSLDGVTFDQLVEGQTVEFETEKSDR 54
Query: 62 NGKYSAENLK 71
A +
Sbjct: 55 G--LRAVRVT 62
>gi|54113555|gb|AAV29411.1| NT02FT1329 [synthetic construct]
Length = 143
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
+G++K+YN DKGYGFI E S D F + + + G V ++ Q+
Sbjct: 2 QGTVKFYNKDKGYGFIYSEESE---KDFFFSINDWKN---PTVPNGSDDVEFEVAQSKKG 55
Query: 63 GKYSAENLKLVPKSSN 78
K A N+KL+ + +
Sbjct: 56 EK--AINIKLLKSAED 69
>gi|302542842|ref|ZP_07295184.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460460|gb|EFL23553.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC
53653]
Length = 136
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I ++ +GYGFI P+ G+DVF+H + + G V + D
Sbjct: 1 MTTTGKILRFDEFRGYGFIAPDD---GGEDVFMHANDLLDEKHLF-QPGSKVRFIPEYGD 56
Query: 61 ANGKYSAENLKLVPKSS 77
K A ++++ + +
Sbjct: 57 KGPK--ASEVRILERGA 71
>gi|300811331|ref|ZP_07091828.1| cold-shock DNA-binding domain protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|313123449|ref|YP_004033708.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|300497695|gb|EFK32720.1| cold-shock DNA-binding domain protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|312280012|gb|ADQ60731.1| Cold-shock DNA-binding protein family [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325684359|gb|EGD26528.1| major cold shock protein [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 69
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K + +GFI + ++ F+ +A+ G L GQ V Y Q
Sbjct: 1 MRTGLVKQFAEKASFGFIEDD---QNHKLYFVFYTAIKEEGYKRLEVGQRVRYQLAQGKH 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCINV 64
>gi|86143394|ref|ZP_01061796.1| cold shock protein, putative DNA-binding protein [Leeuwenhoekiella
blandensis MED217]
gi|85830299|gb|EAQ48759.1| cold shock protein, putative DNA-binding protein [Leeuwenhoekiella
blandensis MED217]
Length = 154
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +++ KG+GFI TE+ + F+H S + + E V+++ +
Sbjct: 93 KGKVSFFDHSKGFGFII---DTENQEKYFVHVSGILED---AIDENDKVSFELERGQKG- 145
Query: 64 KYSAENLKLV 73
+A +K +
Sbjct: 146 -MNAVQVKKI 154
>gi|126334673|ref|XP_001367062.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
24kDa [Monodelphis domestica]
Length = 147
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 63 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--MEGDEVTYKMCSIPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N K+ A + + +
Sbjct: 118 NEKHQAVEVVITHLAP 133
>gi|326803763|ref|YP_004321581.1| putative transcriptional repressor activity CueR [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650444|gb|AEA00627.1| putative transcriptional repressor activity CueR [Aerococcus
urinae ACS-120-V-Col10a]
Length = 67
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +K Y+ +GYGFI +VF+HR+A+ +A + L+ ++
Sbjct: 1 MYQGILKSYDEKRGYGFIQVLHPYFE-KEVFIHRTALQAADYEKMLVNDLLAFEIAWGQR 59
Query: 62 NGKYSAENLK 71
A N++
Sbjct: 60 G--PQAVNVQ 67
>gi|254453709|ref|ZP_05067146.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus
238]
gi|198268115|gb|EDY92385.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus
238]
Length = 177
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +KW++ KG+GFI + E G D+ LH + + + G ++ + + + +
Sbjct: 12 KGHVKWFDAGKGFGFI---LAQEGGADILLHANVLRNFGQSSVADDTGIEVLVAETERG- 67
Query: 64 KYSAENLKLVPK 75
A + + +
Sbjct: 68 -LQAIEVLSIEQ 78
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G D+F+H + AGL +L G+ + ++ G
Sbjct: 107 RVKWFDKGKGFGFANVFG---DDADIFVHVEVLRLAGLADLFPGEAIALRAMEG-KRGLM 162
Query: 66 SAENL 70
+AE L
Sbjct: 163 AAEVL 167
>gi|289581524|ref|YP_003479990.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
gi|289531077|gb|ADD05428.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
Length = 64
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI+ + + DDVF H V G +L EGQ + +D Q
Sbjct: 1 MANGNVDFFNDTGGYGFISTDDA---DDDVFFHMEDV---GGPDLEEGQDIEFDIEQAPK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|76798540|ref|ZP_00780773.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus
agalactiae 18RS21]
gi|76586104|gb|EAO62629.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus
agalactiae 18RS21]
Length = 53
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
+GFI+ E +G DVF H S + G L EGQ VT+D A N+ LV
Sbjct: 1 FGFISSE----TGTDVFAHFSEIKVDGFKTLEEGQKVTFDIQDGQRG--PQATNINLVK 53
>gi|293396764|ref|ZP_06641040.1| cold shock protein [Serratia odorifera DSM 4582]
gi|291421028|gb|EFE94281.1| cold shock protein [Serratia odorifera DSM 4582]
Length = 73
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +GYG I+P D++++ R A+A+ +L EGQ V + ++
Sbjct: 10 GRVKWYDQAEGYGVISPVD---GSDEIYVSRRAIANTKNKSLNEGQNVEFSIYRSSHG-- 64
Query: 65 YSAENL 70
SA ++
Sbjct: 65 LSAADV 70
>gi|55379499|ref|YP_137349.1| cold shock protein [Haloarcula marismortui ATCC 43049]
gi|55232224|gb|AAV47643.1| cold shock protein [Haloarcula marismortui ATCC 43049]
Length = 64
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ E + DDVF H V G +L EG+ + +D Q D
Sbjct: 1 MANGKVDFFNDTGGYGFISTEDA---DDDVFFHMEDV---GGPDLEEGEEIEFDIEQADK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|237653147|ref|YP_002889461.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
gi|237624394|gb|ACR01084.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
Length = 204
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59
M H+G I + DKG+GFITP G G+ VF+H S++A+ EG V+Y+
Sbjct: 1 MRHQGKITTWKDDKGFGFITPNG---GGEPVFVHVSSLANRQRRP--EGTELVSYELA-T 54
Query: 60 DANGKYSAENLKLVPK 75
DA G+ A+ + V +
Sbjct: 55 DAKGRLQAKAVAFVGE 70
>gi|222480048|ref|YP_002566285.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452950|gb|ACM57215.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 68
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + D+ + G +L EGQ V +D +
Sbjct: 1 MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFH--MEDVGGPDLEEGQEVEFDIESSPK 58
Query: 62 NGKYSAENLK 71
+ A NL
Sbjct: 59 GPR--ATNLT 66
>gi|311899342|dbj|BAJ31750.1| hypothetical protein KSE_59800 [Kitasatospora setae KM-6054]
Length = 344
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
+ G + ++ +GYGFI P+ + G+DVFLH + + + + G V ++
Sbjct: 211 MVAGRVVRFDGSRGYGFIAPD---QGGEDVFLHVNDLLIPESYIRT---GLSVVFEIEDG 264
Query: 60 DANGKYSAENLKLVP 74
D K A +++L P
Sbjct: 265 DRGPK--ASSVQLAP 277
>gi|323451383|gb|EGB07260.1| hypothetical protein AURANDRAFT_64934 [Aureococcus anophagefferens]
Length = 1057
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 1 MVHR----GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
M+H G++ W+ K +GFI P+ G+D+F+H S + +G V YD
Sbjct: 570 MMHMTSCAGTVLWF--SKSHGFIKPDD---GGEDIFVHGSDIFQ---KYANDGDRVLYDV 621
Query: 57 VQNDANGKYSAENLKLVPKSS 77
G+ A +++V +
Sbjct: 622 --GTLKGRPKAVAVEIVDGGA 640
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGST---ESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQ 58
+RG KW+N +GFITP S DVF + + ++T G V Y
Sbjct: 675 YRGVCKWFNSKNMHGFITPSESHALDPGETDVFCYAEDLAPGTTHADMTTGDPVEYGLGT 734
Query: 59 NDANGKYSAENLKLVPK 75
+G+ A ++ +
Sbjct: 735 T-KSGRVKAVDVARLDA 750
>gi|91794216|ref|YP_563867.1| hypothetical protein Sden_2865 [Shewanella denitrificans OS217]
gi|91716218|gb|ABE56144.1| protein of unknown function DUF1294 [Shewanella denitrificans
OS217]
Length = 196
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + ++ DKG+GFI P +G +VFLH SA+ +A E ++TY V D
Sbjct: 1 MRVKGKLVRWDDDKGFGFIRP---NLTGPEVFLHISALRNASRR-PQEDDVITYALVA-D 55
Query: 61 ANGKYSAENLKL 72
G+ +A N L
Sbjct: 56 KQGRPTAANATL 67
>gi|1402741|gb|AAC80234.1| major cold-shock protein [Bacillus subtilis]
Length = 45
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI E DDVF+H SA+ G L EGQ V+++ V+ +
Sbjct: 1 EKGFGFIEVE----GQDDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGNR 45
>gi|74181788|dbj|BAE32601.1| unnamed protein product [Mus musculus]
Length = 148
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 64 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 118
Query: 62 NGKYSAENLKLVPKSS 77
N K A L + +
Sbjct: 119 NEKLQAVELVITHLAP 134
>gi|85713421|ref|ZP_01044416.1| Cold shock protein [Idiomarina baltica OS145]
gi|85692757|gb|EAQ30760.1| Cold shock protein [Idiomarina baltica OS145]
Length = 40
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44
+ G +KW+N KG+GFI E D+F H S + G
Sbjct: 1 MATGKVKWFNNSKGFGFIESEDREG---DIFAHYSTIDMEGYR 40
>gi|222085261|ref|YP_002543791.1| cold shock protein [Agrobacterium radiobacter K84]
gi|221722709|gb|ACM25865.1| cold shock protein [Agrobacterium radiobacter K84]
Length = 68
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G +K ++ +KGYGFI P + +F+H V +GL L +GQ + ++ Q+
Sbjct: 1 MFNGIVKNFDLEKGYGFIQPTDGSV---AIFVHAKIVVKSGLETLKKGQKLIFEIEQDGM 57
Query: 62 N 62
Sbjct: 58 G 58
>gi|242247447|ref|NP_001156041.1| protein lin-28 homolog A [Ovis aries]
gi|239736495|gb|ACS12986.1| RNA-binding protein LIN-28 [Ovis aries]
Length = 209
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+G ++ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 42 GICKWFNVRMGFGSLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|56708242|ref|YP_170138.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670713|ref|YP_667270.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
tularensis FSC198]
gi|134302159|ref|YP_001122128.1| cold shock DNA -binding domain-containing protein [Francisella
tularensis subsp. tularensis WY96-3418]
gi|254370729|ref|ZP_04986734.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC033]
gi|56604734|emb|CAG45805.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321046|emb|CAL09188.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
tularensis FSC198]
gi|134049936|gb|ABO47007.1| cold shock DNA -binding domain protein [Francisella tularensis
subsp. tularensis WY96-3418]
gi|151568972|gb|EDN34626.1| cold shock protein [Francisella tularensis subsp. tularensis
FSC033]
gi|282159468|gb|ADA78859.1| cold shock DNA -binding domain protein [Francisella tularensis
subsp. tularensis NE061598]
Length = 143
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
+G++K+YN DKGYGFI E S D F + + + G V ++ Q+
Sbjct: 2 QGTVKFYNKDKGYGFIYSEESE---KDFFFSINDWKN---PTVPNGSDDVEFEVAQSKKG 55
Query: 63 GKYSAENLKLVPKSSN 78
K A N+KL+ + +
Sbjct: 56 EK--AINIKLLKSAED 69
>gi|227514815|ref|ZP_03944864.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931]
gi|227086805|gb|EEI22117.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931]
Length = 70
Score = 57.0 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ + +IK Y+P KG+G+IT T DV+ HR A+ + +GQ V VQ
Sbjct: 1 MIQATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQR 56
Query: 62 NGKYSAENLKLVPKS 76
A ++ ++ +
Sbjct: 57 G--PQAAHVTIIQRE 69
>gi|47226133|emb|CAG04507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K ++ +G+GFI P + G+D+F+H S + + EG VTY
Sbjct: 82 YKGVCKNFSRSQGHGFIRP---SHGGEDIFVHVSDIEGEYVPT--EGDEVTYKVCPIPPK 136
Query: 62 NGKYSAENLKL 72
N K+ A ++ +
Sbjct: 137 NQKFQAVDVVI 147
>gi|218676684|ref|YP_002395503.1| hypothetical protein VS_II0921 [Vibrio splendidus LGP32]
gi|218324952|emb|CAV26780.1| Hypothetical protein VS_II0921 [Vibrio splendidus LGP32]
Length = 81
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG I W++ + G+GF P+ DV +H S + G NL EGQ V + +
Sbjct: 4 TRGYITWFHLENGFGFAKPD---HGDIDVLIHISIIEFDGEINLEEGQRVYLELEEVKDK 60
Query: 63 GKYSAENLKLVP 74
++A +K++P
Sbjct: 61 PHWNA--VKVLP 70
>gi|73959197|ref|XP_852743.1| PREDICTED: similar to calcium-regulated heat-stable protein (24kD)
[Canis familiaris]
Length = 224
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FLH S V + EG VTY
Sbjct: 140 YKGVCKCFCRSKGHGFITPAD---GGPDIFLHISDVEGEYVP--VEGDEVTYKMCSIPPK 194
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 195 NEKLQAVEVVITHLAP 210
>gi|71755901|ref|XP_828865.1| mitochondrial RNA-binding protein [Trypanosoma brucei TREU927]
gi|4757566|gb|AAD29082.1| RNA binding protein precursor [Trypanosoma brucei]
gi|70834251|gb|EAN79753.1| mitochondrial RNA binding protein [Trypanosoma brucei]
gi|261334788|emb|CBH17782.1| RBP16 [Trypanosoma brucei gambiense DAL972]
Length = 141
Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
++G + + +G+GFI + F+H SA+ + G LT GQ V ++
Sbjct: 18 NKGKVISWMSGRGFGFIEDDADK---KQHFVHFSALQTETGGFRALTVGQEVEFEVA--S 72
Query: 61 ANGKYSAENLK-----LVPKSS 77
+G+ AEN+ +P
Sbjct: 73 QDGRTRAENVTSPGGAKLPSGP 94
>gi|53804338|ref|YP_114060.1| cold-shock DNA-binding domain-containing protein [Methylococcus
capsulatus str. Bath]
gi|53758099|gb|AAU92390.1| cold-shock DNA-binding domain protein [Methylococcus capsulatus
str. Bath]
Length = 305
Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ + +KG+GFITP+ GD+ F H S + ++ G ++++ +ND
Sbjct: 239 GTVLSFFHEKGFGFITPDN---GGDNFFFHVSDLTGIEASDVCAGLRISFNAGRNDKG-- 293
Query: 65 YSAENLKLV 73
+A N++ +
Sbjct: 294 LAAHNIRKL 302
>gi|47206294|emb|CAF93182.1| unnamed protein product [Tetraodon nigroviridis]
Length = 158
Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFI P G+D+F+H S + + EG VTY + N
Sbjct: 75 KGVCKNFSRSQGHGFIRPSN---GGEDIFVHISDIEGEYVP--VEGDEVTYKVSRIPPKN 129
Query: 63 GKYSAENLKL 72
K A +K+
Sbjct: 130 LKVQAVEVKI 139
>gi|28201200|dbj|BAC56735.1| cold shock protein [Janthinobacterium sp. J3]
Length = 174
Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + +N ++G+GFI G++ + FLH SA+ L G LVTY+ ++D
Sbjct: 1 MRLQGRVIEWNDERGFGFIIQNGTS---ERTFLHISALRKTKGRPLL-GSLVTYEIRRDD 56
Query: 61 ANGKYSAENLKLVPKSS 77
G+ A +L+ S
Sbjct: 57 K-GRLQAVAAELIGTKS 72
>gi|284166801|ref|YP_003405080.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284016456|gb|ADB62407.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 64
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI + S DDVF H V G +LTEG + +D Q
Sbjct: 1 MANGKVDFFNDTGGYGFIETDDS---DDDVFFHMEDV---GGEDLTEGTEIEFDIEQAPK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|322510909|gb|ADX06222.1| cold-shock DNA-binding domain-containing protein [Organic Lake
phycodnavirus 2]
Length = 88
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
+KW+N KG+GF+ E +G + F H S ++ G L G+ V+ V D N K
Sbjct: 4 VKWFNKRKGFGFVVDE----TGSEYFCHHSDISITGYKYLRAGEYVSGTVVNMDGNKK 57
>gi|289581096|ref|YP_003479562.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
gi|289530649|gb|ADD05000.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
43099]
Length = 64
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + DDVF H V G +LTEG + +D Q
Sbjct: 1 MANGTVDFFNDTGGYGFIETEDA---DDDVFFHMEDV---GGEDLTEGTEIEFDIEQAPK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|119628220|gb|EAX07815.1| lin-28 homolog (C. elegans), isoform CRA_b [Homo sapiens]
Length = 214
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHR-----SAVASAGLFNLTEGQLVTYD 55
G KW+N G+GF++ + DVF+H+ S + G +L EG+ V +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQVRLIPSKLHMEGFRSLKEGEAVEFT 101
Query: 56 YVQNDAN 62
+ ++
Sbjct: 102 FKKSAKG 108
>gi|308806684|ref|XP_003080653.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri]
gi|116059114|emb|CAL54821.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri]
Length = 141
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE------GQLVTYDYVQND 60
+ W+N +GYG++ P +DVF+H+S + G ++ E G + ++ ++
Sbjct: 44 VTWFNCVRGYGYVRPHD---GSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDE 100
Query: 61 ANGKYSAENLK 71
A+N+
Sbjct: 101 RR---RAKNVT 108
>gi|157121173|ref|XP_001659860.1| hypothetical protein AaeL_AAEL009235 [Aedes aegypti]
gi|108874689|gb|EAT38914.1| conserved hypothetical protein [Aedes aegypti]
Length = 159
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K ++ KG+GFI+P T GDD+F+H S + + G V+Y
Sbjct: 65 EEGKVKSFSRSKGHGFISP---TAGGDDIFVHISDIEGEYVP--LPGDEVSYRLCSIPPK 119
Query: 63 -GKYSAENLKLVPKSSN 78
K A ++ + +
Sbjct: 120 FEKVQAIHVHITHLTPE 136
>gi|41056167|ref|NP_956856.1| calcium-regulated heat stable protein 1 [Danio rerio]
gi|33989487|gb|AAH56576.1| Calcium regulated heat stable protein 1 [Danio rerio]
Length = 155
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG- 63
G K ++ KG+GFITP G+D+F+H S + G + EG V Y
Sbjct: 73 GVCKCFSRSKGHGFITPSD---GGNDIFVHISDI--DGEYVPVEGDEVCYKICSIPPKHE 127
Query: 64 KYSAENLKLVPKSS 77
K A + + +
Sbjct: 128 KIQAVEVTITHLAP 141
>gi|326929252|ref|XP_003210782.1| PREDICTED: calcium-regulated heat stable protein 1-like, partial
[Meleagris gallopavo]
Length = 102
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFI+P G D+F+H S + + G VTY
Sbjct: 18 YKGVCKCFCRSKGHGFISPAD---GGPDIFVHISDIEGEYVP--VSGDEVTYKVCTIPPK 72
Query: 62 NGKYSAENLKLVPKSS 77
N K A + + +
Sbjct: 73 NEKLQAVEVVITHLAP 88
>gi|330862902|emb|CBX73039.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
Length = 50
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V
Sbjct: 6 GRVKWFNQSEGYGFISPHDGSL---DVYVSKTAIANTKNKSLSEGQDV 50
>gi|111025370|ref|YP_707790.1| cold shock protein CspA [Rhodococcus jostii RHA1]
gi|110824349|gb|ABG99632.1| probable cold shock protein CspA [Rhodococcus jostii RHA1]
Length = 79
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
N +KG+GF P+G VF+H S +A G L EGQ + Y+ Q AEN
Sbjct: 25 NGEKGFGFTAPDGG------VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKG--VQAEN 75
>gi|259479879|tpe|CBF70506.1| TPA: cold shock NA binding domain protein (JCVI) [Aspergillus
nidulans FGSC A4]
Length = 111
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G++KWYN +G+GFIT + G+ + +S L EG V+Y+ V
Sbjct: 49 GTVKWYNDAQGFGFITSD---FGGELILRRQSITEHT--QRLKEGMKVSYEAV 96
>gi|317491464|ref|ZP_07949900.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316921011|gb|EFV42334.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 69
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +G+G I+P G+D++++RS +A++ LTEGQ V +
Sbjct: 6 GLVKWYSQSEGFGIISPLD---GGNDIYVNRSGIANSRKKLLTEGQRVEFSTYLGSRG-- 60
Query: 65 YSAENL 70
+AE++
Sbjct: 61 LTAEDV 66
>gi|313127432|ref|YP_004037702.1| cold-shock DNA-binding protein family [Halogeometricum
borinquense DSM 11551]
gi|312293797|gb|ADQ68257.1| cold-shock DNA-binding protein family [Halogeometricum
borinquense DSM 11551]
Length = 64
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI E +DVF H V G +L EG + ++
Sbjct: 1 MAEGKVDFFNDTGGYGFIETEDH---DEDVFFHMEDV---GGPDLEEGTEIEFEIEDAPK 54
Query: 62 NGKYSAENLKLV 73
+ A+N+ +
Sbjct: 55 GPR--AKNVTRL 64
>gi|76802502|ref|YP_327510.1| cold shock protein [Natronomonas pharaonis DSM 2160]
gi|76558367|emb|CAI49958.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
Length = 64
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + +DVF H V G +LTEG + +D +
Sbjct: 1 MATGTVDFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGEDLTEGTDLEFDIDEAPK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ V
Sbjct: 55 GPR--ATNVVRV 64
>gi|268562898|ref|XP_002638697.1| Hypothetical protein CBG11894 [Caenorhabditis briggsae]
gi|187029975|emb|CAP30963.1| hypothetical protein CBG_11894 [Caenorhabditis briggsae AF16]
Length = 258
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ DVF+H++A+A + L L + + + +D V+
Sbjct: 62 QGKVKWYSVLRRYGFISRNDGE---KDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVE 118
Query: 59 NDANGKYSAENLK 71
NG +A N+
Sbjct: 119 G-KNGPEAA-NVT 129
>gi|116003971|ref|NP_001070345.1| cold shock domain-containing protein C2 [Bos taurus]
gi|115305132|gb|AAI23466.1| Cold shock domain containing C2, RNA binding [Bos taurus]
gi|296486964|gb|DAA29077.1| RNA-binding protein pippin [Bos taurus]
Length = 153
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 70 KGICKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKVCPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTQLAP 139
>gi|110637372|ref|YP_677579.1| cold-shock DNA-binding protein family protein [Cytophaga
hutchinsonii ATCC 33406]
gi|110280053|gb|ABG58239.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii ATCC
33406]
Length = 151
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + ++N KGYGFI + + +F+H + + + ++ E VT++
Sbjct: 90 KGIVTFFNDSKGYGFIKDMDTQ---ESIFVHINGL----VDSIKENNKVTFEVEMGPKGP 142
Query: 64 KYSAENLKL 72
A L
Sbjct: 143 NAVAVKLSK 151
>gi|289770129|ref|ZP_06529507.1| cold-shock DNA-binding domain-containing protein [Streptomyces
lividans TK24]
gi|289700328|gb|EFD67757.1| cold-shock DNA-binding domain-containing protein [Streptomyces
lividans TK24]
Length = 60
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 28 GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
G DVF+H SA+ G L EGQ V ++ Q A+ ++L
Sbjct: 16 GADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQKG--PQADMVRL 58
>gi|3121935|sp|Q56922|CSPA_YEREN RecName: Full=Major cold shock protein
gi|1402789|gb|AAC80259.1| major cold-shock protein [Yersinia enterocolitica]
Length = 46
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
DKG+GFITP DVF+H SA+ S L EGQ V +
Sbjct: 1 DKGFGFITPAD---GSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAK 46
>gi|268566689|ref|XP_002639788.1| Hypothetical protein CBG02238 [Caenorhabditis briggsae]
gi|187037584|emb|CAP23334.1| hypothetical protein CBG_02238 [Caenorhabditis briggsae AF16]
Length = 263
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ DVF+H++A+A + L L + + V +D V
Sbjct: 62 QGKVKWYSVLRRYGFISRNDGE---KDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLV- 117
Query: 59 NDANGKYSAENLK 71
+ NG +A N+
Sbjct: 118 DGKNGPEAA-NVT 129
>gi|163750506|ref|ZP_02157745.1| cold shock domain family protein [Shewanella benthica KT99]
gi|161329827|gb|EDQ00815.1| cold shock domain family protein [Shewanella benthica KT99]
Length = 198
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + + DKG+GFI PE T +G DVF+H S + + G + Y Q A
Sbjct: 3 MEKGILVRWKNDKGFGFIEPE--TANGKDVFIHISELKHMARKPIV-GDSIEYR-TQQQA 58
Query: 62 NGKYSAEN-----LKLVPKSS 77
+GK+ A N + ++ S+
Sbjct: 59 DGKFKAINASIKGVAVISAST 79
>gi|268564326|ref|XP_002639074.1| C. briggsae CBR-CEY-2 protein [Caenorhabditis briggsae]
Length = 256
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
+G +KWY+ + YGFI+ D+F+H++A+A + L L + + + +D V+
Sbjct: 62 QGKVKWYSVLRRYGFISRNDGE---KDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVE 118
Query: 59 NDANGKYSAENLK 71
NG +A N+
Sbjct: 119 G-KNGPEAA-NVT 129
>gi|76364244|sp|P0C0F0|CSPA_STRPY RecName: Full=Major cold shock protein
gi|1402783|gb|AAC80258.1| major cold-shock protein [Streptococcus pyogenes]
Length = 45
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GFI+ E G DVF H SA+ + G L EGQ V +D +
Sbjct: 1 EKGFGFISTEN----GQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 45
>gi|241895732|ref|ZP_04783028.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313]
gi|241871099|gb|EER74850.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313]
Length = 69
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 2 VHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+ + G +K + DKG+GFI + DDVF+H SA+ + + +LT GQ V VQ
Sbjct: 1 MEKISGYVKTWQSDKGFGFIE----LKGEDDVFVHFSAIQTPRVRDLTVGQEVKLVVVQG 56
Query: 60 DANGKYSAENL 70
+ +A +
Sbjct: 57 IRGPQAAAVEV 67
>gi|262045860|ref|ZP_06018824.1| cold shock protein [Lactobacillus crispatus MV-3A-US]
gi|260573819|gb|EEX30375.1| cold shock protein [Lactobacillus crispatus MV-3A-US]
Length = 67
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++ ++ YGFI + + F+ A+ G L GQ V Y Q
Sbjct: 1 MRLGTVEQFDEGSSYGFIEDD---RNHKSYFVFYKAIKEEGYKTLQVGQRVKYQLAQGKN 57
Query: 62 NGKYSAENL 70
N+
Sbjct: 58 G--LQCVNV 64
>gi|313675263|ref|YP_004053259.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
4126]
gi|312941961|gb|ADR21151.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
4126]
Length = 63
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N DKG+GFI + + +++F+H S + + + VT++
Sbjct: 1 MSTGTVKFFNEDKGFGFIIEDETE---NEIFVHVSGLEDD----IEKNDKVTFETTDGKK 53
Query: 62 NGKYSAENLKLV 73
+A ++ V
Sbjct: 54 G--LNAIGVRRV 63
>gi|322369491|ref|ZP_08044056.1| cold-shock DNA-binding domain protein [Haladaptatus
paucihalophilus DX253]
gi|320551223|gb|EFW92872.1| cold-shock DNA-binding domain protein [Haladaptatus
paucihalophilus DX253]
Length = 64
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + S DDVF H V G +LTEG + +D Q
Sbjct: 1 MANGKVDFFNDTGGYGFISTDDS---DDDVFFHMEDV---GGEDLTEGTDIEFDIEQAPK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|257387381|ref|YP_003177154.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
gi|257169688|gb|ACV47447.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
DSM 12286]
Length = 64
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + DDVF H V G +L EG V +D Q D
Sbjct: 1 MANGTVDFFNDTGGYGFIETEDA---DDDVFFHMEDV---GGPDLEEGTDVDFDIEQADK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|212636761|ref|YP_002313286.1| hypothetical protein swp_4029 [Shewanella piezotolerans WP3]
gi|212558245|gb|ACJ30699.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 251
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFI--TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
M+ +G I +N KGYGFI +GS ++ DVF+H SA+ G G +V + +
Sbjct: 1 MIKKGQIVRWNDSKGYGFIRCEVQGSEQATQDVFMHMSALEPMGRR-PQVGDVVDFQI-E 58
Query: 59 NDANGKYSA 67
A+GK A
Sbjct: 59 VQADGKQRA 67
>gi|6911694|emb|CAB72144.1| cold-shock protein A [Streptococcus thermophilus]
Length = 45
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
KG+GFIT E G D+F H S++ S G +L E Q V +D
Sbjct: 1 TKGFGFITSED----GQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQR 45
>gi|330507709|ref|YP_004384137.1| cold shock DNA binding domain-containing protein [Methanosaeta
concilii GP-6]
gi|328928517|gb|AEB68319.1| cold shock DNA binding domain protein [Methanosaeta concilii
GP-6]
Length = 64
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++K++N K +GFI + G D F+H + + + EG V++D ++ +
Sbjct: 1 MVDGTVKFFNRVKNFGFIAGDD----GKDYFVHVTGLKPG--VAIDEGDKVSFDVIEGEK 54
Query: 62 NGKYSAENLKLV 73
K A+ ++ V
Sbjct: 55 GPK--ADKVEKV 64
>gi|254369157|ref|ZP_04985169.1| hypothetical protein FTAG_00096 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122107|gb|EDO66247.1| hypothetical protein FTAG_00096 [Francisella tularensis subsp.
holarctica FSC022]
Length = 143
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
+G++K+YN DKGYGFI E S D F + + + G V ++ Q+ +
Sbjct: 2 QGTVKFYNKDKGYGFIYSEESE---KDFFFSINDWKN---PTVPNGSDDVEFEVAQSKKD 55
Query: 63 GKYSAENLKLVPKSSN 78
K A N+KL+ + +
Sbjct: 56 EK--AINIKLLKSAED 69
>gi|118082706|ref|XP_422970.2| PREDICTED: hypothetical protein [Gallus gallus]
gi|326912009|ref|XP_003202347.1| PREDICTED: cold shock domain-containing protein C2-like [Meleagris
gallopavo]
Length = 153
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K ++ +G+GFITPE +D+F+H S + + EG VTY
Sbjct: 69 YKGVCKQFSRSQGHGFITPEN---GTEDIFVHVSDIEGEYVP--VEGDEVTYKVCPIPPK 123
Query: 62 NGKYSAENLKLVPKSS 77
N K+ A + L +
Sbjct: 124 NQKFQAVEVVLTNLAP 139
>gi|269914112|ref|NP_663448.2| cold shock domain-containing protein C2 [Mus musculus]
gi|26324880|dbj|BAC26194.1| unnamed protein product [Mus musculus]
gi|74208901|dbj|BAE21201.1| unnamed protein product [Mus musculus]
Length = 154
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 71 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKICPIPPKN 125
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 126 QKFQAVEVVLTQLAP 140
>gi|284166114|ref|YP_003404393.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284015769|gb|ADB61720.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 65
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI+ E + +DVF H V G +L EG+ + +D Q
Sbjct: 1 MANGNVDFFNDTGGYGFISTEDA---DEDVFFHMEDV---GGPDLEEGEEIEFDIEQAPK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|91094659|ref|XP_972255.1| PREDICTED: similar to CG9705 CG9705-PA [Tribolium castaneum]
gi|270016464|gb|EFA12910.1| hypothetical protein TcasGA2_TC006980 [Tribolium castaneum]
Length = 121
Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G IK + +KG+GFITPE +D+F+H S + + G V Y
Sbjct: 44 GEIKSFCREKGHGFITPED---GSEDIFVHISDIEDEYIP--IPGDRVKYQLCPIPPKFE 98
Query: 64 KYSAENLKLVPKSSN 78
K+ A ++ +V
Sbjct: 99 KHQAVHVHIVNLKPE 113
>gi|163755666|ref|ZP_02162785.1| hypothetical protein KAOT1_05877 [Kordia algicida OT-1]
gi|161324579|gb|EDP95909.1| hypothetical protein KAOT1_05877 [Kordia algicida OT-1]
Length = 154
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +++ KG+GFI E+ + F H S + + + E V+++
Sbjct: 92 KGKVSFFDSSKGFGFII---DAENNEKYFTHVSGI----IDTIVENDKVSFELEMGKKG- 143
Query: 64 KYSAENLKLVPK 75
+A + L+ +
Sbjct: 144 -MNAVKVTLIKE 154
>gi|154340327|ref|XP_001566120.1| RNA binding protein rbp16 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063439|emb|CAM39618.1| putative RNA binding protein rbp16 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 143
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
+++ G + + +G+GFI F+H SA+ + G L Q V ++
Sbjct: 16 LLNTGKVVSWMSGRGFGFIE---DNADKKQHFVHFSALQTETGGYRALAVDQEVEFEVAS 72
Query: 59 NDANGKYSAENLK-----LVPKSS 77
D G+ AEN+ +P
Sbjct: 73 QD--GRTRAENVTAPGGAKLPSGP 94
>gi|158315982|ref|YP_001508490.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
EAN1pec]
gi|158111387|gb|ABW13584.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
Length = 146
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
+ G + ++ +GYGF+ P G+DVFLH + + +L G ++ ++ ++D
Sbjct: 1 MSTGKVLRFDHVRGYGFLAPSD---GGEDVFLHANDLLVE--KSLVVPGVVMEFEVEESD 55
Query: 61 ANGKYSAENL 70
K SA +
Sbjct: 56 RGRKASAARI 65
>gi|125977582|ref|XP_001352824.1| GA21978 [Drosophila pseudoobscura pseudoobscura]
gi|195169856|ref|XP_002025730.1| GL20690 [Drosophila persimilis]
gi|54641575|gb|EAL30325.1| GA21978 [Drosophila pseudoobscura pseudoobscura]
gi|194109223|gb|EDW31266.1| GL20690 [Drosophila persimilis]
Length = 142
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G +K ++ KG+GFI P T G+DVF H S + + G V Y
Sbjct: 56 TGVVKSFSRSKGHGFIIP---TAGGEDVFCHVSDIEGEYVP--MPGDEVKYRLCAIPPKY 110
Query: 63 GKYSAENLKL 72
K+ A ++++
Sbjct: 111 EKHQAVHVQI 120
>gi|32129843|sp|Q91YQ3|CSDC2_MOUSE RecName: Full=Cold shock domain-containing protein C2; AltName:
Full=RNA-binding protein PIPPin
gi|16359300|gb|AAH16109.1| Cold shock domain containing C2, RNA binding [Mus musculus]
gi|148672599|gb|EDL04546.1| cold shock domain containing C2, RNA binding [Mus musculus]
Length = 154
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 71 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKICPIPPKN 125
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 126 QKFQAVEVVLTQLAP 140
>gi|163742804|ref|ZP_02150189.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis
2.10]
gi|161384059|gb|EDQ08443.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis
2.10]
Length = 164
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW++P KG+GF+ + E G D+ LH + + + G ++ +G V + + A
Sbjct: 2 KWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAEVELVTHRTERG--VQA 56
Query: 68 ENL-KLVPKSSN 78
+ + P + +
Sbjct: 57 VEVLSITPPARD 68
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF G +DVFLH + +GL L G+ + + + G+
Sbjct: 93 RVKWFDKGKGFGFANVFGR---DEDVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRM 148
Query: 66 SAENL 70
+ E L
Sbjct: 149 AVEVL 153
>gi|327402091|ref|YP_004342929.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
gi|327317599|gb|AEA42091.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
16823]
Length = 148
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++ +YN KGYGFI + SGD +F+H + + +TEG V+++ +
Sbjct: 88 QGTVTFYNDSKGYGFIK---DSTSGDSIFVHANQLTE----TITEGNRVSFEVEKGQRG- 139
Query: 64 KYSAENLKL 72
+A +K
Sbjct: 140 -PTAVRVKK 147
>gi|240170464|ref|ZP_04749123.1| cold-shock DNA-binding protein family protein [Mycobacterium
kansasii ATCC 12478]
Length = 99
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I W++ ++G+GF+ P DVF+ S + + EGQ V+Y +
Sbjct: 36 GVINWFDDERGFGFVHPAD---GDRDVFIDSSEIVDWPAGGVHEGQHVSYQTGGTRHWPR 92
Query: 65 YSAENL 70
A ++
Sbjct: 93 AQAVHI 98
>gi|83951849|ref|ZP_00960581.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM]
gi|83836855|gb|EAP76152.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM]
Length = 129
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
IKW++ KG+GF + +DVF+H + +GL +L G+ + ++ G+
Sbjct: 57 RIKWFDKGKGFGF---ANTFGREEDVFVHIEVLRRSGLADLQPGEALAIRVIEG-KRGRM 112
Query: 66 SAENLKLVPKSS 77
A ++ ++
Sbjct: 113 -ATEVRGWESAA 123
>gi|86133588|ref|ZP_01052170.1| conserved hypothetical protein [Polaribacter sp. MED152]
gi|85820451|gb|EAQ41598.1| conserved hypothetical protein [Polaribacter sp. MED152]
Length = 150
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +++ KG+GFI +G+ F H S + + + E VT++ +
Sbjct: 90 KGKVNFFDSSKGFGFIIDSD---NGEKYFTHVSGL----IDTIAENDKVTFELEKGMRG- 141
Query: 64 KYSAENLKLV 73
+A +K V
Sbjct: 142 -MNAVKVKKV 150
>gi|294636900|ref|ZP_06715228.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC
23685]
gi|291089891|gb|EFE22452.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC
23685]
Length = 69
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+P G G I+P GDD+++ R+A+AS+ L EGQ V + + +
Sbjct: 6 GFVKWYDPSAGLGVISPLD---GGDDLYVSRTAIASSRNKLLREGQRVEFSTPRGRRS-- 60
Query: 65 YSAENL 70
AE++
Sbjct: 61 QIAEDV 66
>gi|224095055|ref|XP_002197370.1| PREDICTED: similar to cold shock domain containing C2, RNA binding
[Taeniopygia guttata]
Length = 161
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 78 KGVCKQFSRSQGHGFITPEN---GTEDIFVHVSDIEGEYVP--VEGDEVTYKVCPIPPKN 132
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 133 QKFQAVEVVLTNLAP 147
>gi|322493898|emb|CBZ29189.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 529
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 42/115 (36%)
Query: 3 HRGSIKWYNPDKGYGFIT--------------------------------PEGSTESGD- 29
+ G +K YNP++G+GF+T P E
Sbjct: 335 YEGFVKRYNPNRGFGFLTATAHVTMVNDGSNSDSAAGTPIASVNATAKAVPTTGEEKNPK 394
Query: 30 ---------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
D+F+H+S++ G L G V + D A N++L+P+
Sbjct: 395 KHLTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRIGYKDGQQTLQAVNVELLPQ 449
>gi|297493195|ref|XP_002700194.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
gi|296470653|gb|DAA12768.1| cold shock domain protein A short-like [Bos taurus]
Length = 261
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
GS+ + KGYGFI+ + +DVF+H +A+ ++ G+ V +D VQ +
Sbjct: 70 GSVVRFKEKKGYGFIS---MHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 126
Query: 61 ANGKYS 66
K +
Sbjct: 127 QGTKAA 132
>gi|329925038|ref|ZP_08279982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5]
gi|328940157|gb|EGG36489.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5]
Length = 80
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G+++ +N KGYGF+ +G +G+ +F H + GL L+ G+ ++++ + DA G
Sbjct: 11 TGTVRKFNDPKGYGFVDVDG---TGERLFFHINESIEPGLGWLSYGERISFEIGE-DAKG 66
Query: 64 KYSAENLKLV 73
+ A +KL+
Sbjct: 67 RNHAVKIKLI 76
>gi|315126645|ref|YP_004068648.1| cold shock DNA-binding domain-containing protein
[Pseudoalteromonas sp. SM9913]
gi|315015159|gb|ADT68497.1| cold shock DNA-binding domain-containing protein
[Pseudoalteromonas sp. SM9913]
Length = 192
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G +K +N +KG+GFI D F+H S++ G ++ ++ D
Sbjct: 1 MNKGLLKSWNDEKGFGFIKSTTLQH---DTFIHISSLKHMSRK-PKVGDIIYFEVA-TDP 55
Query: 62 NGKYSAENLKL 72
NGK A N ++
Sbjct: 56 NGKTKAVNCRI 66
>gi|170728619|ref|YP_001762645.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|169813966|gb|ACA88550.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
Length = 206
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++ +N +KG+GFI PE +G DVF+H SA+ + G + + +
Sbjct: 1 MERGTLVRWNDEKGFGFIKPETG--NGKDVFIHISALKHMARKPVI-GDGILF-LTEQQT 56
Query: 62 NGKYSAE 68
+GK A
Sbjct: 57 DGKIKAI 63
>gi|225712200|gb|ACO11946.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
Length = 188
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G +K++ +G+GFITP + F+H S + + V +
Sbjct: 85 HEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVP--RRDCQVKFKVCPIPPR 142
Query: 63 -GKYSAENLKLVPKSSN 78
K+ A ++++ +
Sbjct: 143 FEKFQAVQVRIINFTPE 159
>gi|296394224|ref|YP_003659108.1| cold-shock DNA-binding domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296181371|gb|ADG98277.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
44985]
Length = 167
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQ 58
M G + ++ +G+GF+ P+ G+DVF+H + A L G ++ +D +
Sbjct: 1 MTSSGKLVHFDAVRGFGFVAPD---AGGEDVFIHVNDFEEAVADERLLRPGAVLEFDVER 57
Query: 59 NDANGKYSAENLKLVPKS 76
A +++L ++
Sbjct: 58 GGRG--LKAVHVRLAHRA 73
>gi|330448523|ref|ZP_08312171.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328492714|dbj|GAA06668.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 204
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N KG+GFI+P+ GDDVF H SA+ + + V + D
Sbjct: 1 MTQKGKIISWNQQKGFGFISPDN---GGDDVFFHVSAL-ADKQSRPRIQEPVNFKLG-TD 55
Query: 61 ANGKYSAENLKLV 73
+ G+ SA + V
Sbjct: 56 SKGRLSASKVTFV 68
>gi|257095960|ref|YP_003169601.1| cold-shock DNA-binding domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257048484|gb|ACV37672.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 203
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59
M G++K +N D+G+GFI P + G ++F+H A G + GQ +T++ N
Sbjct: 1 MRIDGTLKSWNDDRGFGFIEP---SLGGQEIFVHIKAFETRLGRPQI--GQRLTFEIEMN 55
Query: 60 DANGKYSAENLKLVPKSSN 78
K A+ ++ V + +
Sbjct: 56 AEGKK-RAKRVQPVQVARS 73
>gi|322369014|ref|ZP_08043581.1| cold-shock DNA-binding domain protein [Haladaptatus
paucihalophilus DX253]
gi|320551745|gb|EFW93392.1| cold-shock DNA-binding domain protein [Haladaptatus
paucihalophilus DX253]
Length = 64
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI + + +DVF H V G +LTEG + +D Q
Sbjct: 1 MANGKVDFFNDTGGYGFIETDDA---DEDVFFHMEDV---GGEDLTEGTEIEFDIEQAPK 54
Query: 62 NGKYSAENL 70
+ A+N+
Sbjct: 55 GPR--AKNV 61
>gi|224370464|ref|YP_002604628.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
gi|223693181|gb|ACN16464.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
Length = 217
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ RG+I ++N KG+GFITP G +F H + + L Q +TY D
Sbjct: 1 MLRRGTITFWNDGKGFGFITP---NAGGKQLFFHIKSCSPHNLR-PEINQSITYSLSV-D 55
Query: 61 ANGKYSAENLKLVPK 75
G+ A + ++P
Sbjct: 56 KQGRPCAVKV-ILPD 69
>gi|312887572|ref|ZP_07747166.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM
18603]
gi|311299942|gb|EFQ77017.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM
18603]
Length = 155
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++ ++N KG+GFI + S + +F+H A+ A + E VT++ Q
Sbjct: 90 KGTVTFFNESKGFGFIQ---DSVSQESIFVHVKALEEA----IKENDKVTFETEQGLKG- 141
Query: 64 KYSAENLKL 72
SA +K
Sbjct: 142 -LSAIKVKK 149
>gi|326799533|ref|YP_004317352.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
gi|326550297|gb|ADZ78682.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
Length = 59
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+K++N KG+GFITP T G + F+H + + + V++D Q +
Sbjct: 2 VKFFNETKGFGFITP---TYGGHEFFVHSPGLK----DRIRKNDDVSFDVEQGQKG--LN 52
Query: 67 AENLKLV 73
A ++KL+
Sbjct: 53 AVDVKLI 59
>gi|76802455|ref|YP_327463.1| cold shock protein [Natronomonas pharaonis DSM 2160]
gi|76558320|emb|CAI49909.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
Length = 68
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + D+ + G +LTEG V +D +
Sbjct: 1 MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFH--MEDVGGEDLTEGTEVEFDIESSPK 58
Query: 62 NGKYSAENLKL 72
+ +A ++L
Sbjct: 59 GPR-AANVVRL 68
>gi|3121928|sp|Q51929|CSPA_PHOMO RecName: Full=Major cold shock protein
gi|1402763|gb|AAC80249.1| major cold-shock protein [Photobacterium leiognathi subsp.
mandapamensis]
Length = 46
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+KG+GF+T G DVF+H A+AS G LTEGQ V++D Q
Sbjct: 1 EKGFGFLTQNN---GGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQK 46
>gi|256545437|ref|ZP_05472799.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
gi|256398833|gb|EEU12448.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
Length = 68
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59
M G +K+++ KG+GFI E D F H S + S + G V +D
Sbjct: 1 MKMEGKVKFFDNKKGFGFIESESG-----DYFFHYSEIISDKVYKTIENGARVEFDVKDF 55
Query: 60 DANGKYSAENLKL 72
+A N+K
Sbjct: 56 GRGD--TAFNVKK 66
>gi|226953537|ref|ZP_03824001.1| cold-shock DNA-binding protein family protein [Acinetobacter sp.
ATCC 27244]
gi|226835715|gb|EEH68098.1| cold-shock DNA-binding protein family protein [Acinetobacter sp.
ATCC 27244]
Length = 232
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G IK YN D+G+GFI E D+F H + G G+LV + V++
Sbjct: 1 MFLTGKIKNYNSDRGFGFIEVE---HDRSDIFFHITDFPKIG-GEPKTGELVKFLIVED- 55
Query: 61 ANGKYSAENLKLVP 74
GK+ A N+ +
Sbjct: 56 -KGKFKATNIVRID 68
>gi|293610661|ref|ZP_06692961.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827005|gb|EFF85370.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 209
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYRVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|120435929|ref|YP_861615.1| cold shock-like protein [Gramella forsetii KT0803]
gi|117578079|emb|CAL66548.1| cold shock-like protein [Gramella forsetii KT0803]
Length = 152
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G + +++ KG+GFI +G+ F+H S + + + E V+++ Q
Sbjct: 91 TEGKVSFFDHSKGFGFII---GKTTGEKYFVHVSGL----IDEIDENDKVSFELEQGMKG 143
Query: 63 GKYSAENLKLV 73
+A +K +
Sbjct: 144 --LNAVRVKKI 152
>gi|126337665|ref|XP_001363238.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
24kDa [Monodelphis domestica]
Length = 146
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K + KG+GFITP G D+FL S V + EG VTY
Sbjct: 62 YKGVCKCFYRSKGHGFITPAD---GGPDIFLLISDVEGEYMP--MEGDEVTYKMCSIPPK 116
Query: 62 NGKYSAENLKLVPKSS 77
N K+ A + + +
Sbjct: 117 NEKHQAVEVVITHLAP 132
>gi|61680881|pdb|2BH8|A Chain A, Combinatorial Protein 1b11
gi|61680882|pdb|2BH8|B Chain B, Combinatorial Protein 1b11
Length = 101
Score = 55.4 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVT 53
G +KW+N DKG+GFITP+ DVF+H SA +S N +G V
Sbjct: 18 TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAGSSGAAVRGNPQQGDRVE 66
>gi|225709220|gb|ACO10456.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
gi|225711724|gb|ACO11708.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
Length = 189
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G++K++ +G+GF+TP + F+H S + + V +
Sbjct: 88 GTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIEGEFVP--RRNDTVQFKVCPIPPRFE 145
Query: 64 KYSAENLKL 72
K+ A +++
Sbjct: 146 KFQAVQVRI 154
>gi|225708686|gb|ACO10189.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
Length = 189
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G++K++ +G+GF+TP + F+H S + + V +
Sbjct: 88 GTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIEGEFVP--RRNDTVQFKVCPIPPRFE 145
Query: 64 KYSAENLKL 72
K+ A +++
Sbjct: 146 KFQAVQVRI 154
>gi|149913750|ref|ZP_01902282.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
gi|149812034|gb|EDM71865.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
Length = 135
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF + +DVF+H + +GL +L G+ + ++ G+
Sbjct: 65 RVKWFDKGKGFGF---ANTFGRDEDVFVHVEVLRRSGLADLQPGEALAMRVIEG-KRGRM 120
Query: 66 SAEN 69
+ E
Sbjct: 121 ATEV 124
>gi|325123771|gb|ADY83294.1| hypothetical protein BDGL_002708 [Acinetobacter calcoaceticus
PHEA-2]
Length = 209
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYRVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|333030557|ref|ZP_08458618.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
gi|332741154|gb|EGJ71636.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
Length = 147
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + ++N KG+GFI + S + F H S + E VT++ Q
Sbjct: 86 TGRVDFFNDAKGFGFIKDQASVNT---YFFHISNAPED----IKENNKVTFELEQGPRG- 137
Query: 64 KYSAENLKLV 73
+A N+K++
Sbjct: 138 -MNAVNIKII 146
>gi|330943369|gb|EGH45738.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 41
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
G++KW+N +KG+GFITP+G GDD+F+H A+ S G
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDG 41
>gi|238920339|ref|YP_002933854.1| cold-shock DNA-binding domain, [Edwardsiella ictaluri 93-146]
gi|238869908|gb|ACR69619.1| cold-shock DNA-binding domain, putative [Edwardsiella ictaluri
93-146]
Length = 69
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KWY+P G G I+P GDD+++ R+ +ASA L EGQ V +
Sbjct: 2 ILKMGFVKWYDPTAGLGVISPLD---GGDDLYVSRTGIASAHNKLLREGQRVEFSTPCGR 58
Query: 61 ANGKYSAENL 70
+ AE++
Sbjct: 59 RS--QMAEDV 66
>gi|54024530|ref|YP_118772.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54016038|dbj|BAD57408.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 130
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + ++ +G+GFI PE G DVF+H + + L +G++ +D + D K
Sbjct: 6 GKLVSFDSSRGFGFIRPED---GGPDVFVHVNDIGLDE-DELRQGRVFEFDVTEGDRGPK 61
Query: 65 YSAENLKLV 73
A NL V
Sbjct: 62 --AINLSAV 68
>gi|325108943|ref|YP_004270011.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
DSM 5305]
gi|324969211|gb|ADY59989.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
DSM 5305]
Length = 66
Score = 55.4 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IK DKG+GFI + D+F H SA+ L GQ V Y+ +
Sbjct: 1 MPEGKIKKLVADKGFGFIQGDRG-----DLFFHLSALQDFQFEALQVGQAVNYEEEEGPK 55
Query: 62 NGKYSAENLKLV 73
+ A ++ +V
Sbjct: 56 GPR--AVSVMVV 65
>gi|114564799|ref|YP_752313.1| cold-shock DNA-binding domain-containing protein [Shewanella
frigidimarina NCIMB 400]
gi|114336092|gb|ABI73474.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
NCIMB 400]
Length = 204
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++ +N +KG+GFI PE DVF+H S + + G + + +N
Sbjct: 1 MERGTLIRWNTEKGFGFIKPETG--DNQDVFIHISTLKHMARKPIV-GDEILFH-RENQP 56
Query: 62 NGKYSAE 68
+GK A
Sbjct: 57 DGKVKAV 63
>gi|307823633|ref|ZP_07653862.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307735618|gb|EFO06466.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 107
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G +K + D+G+GFI+P+ G D+F+H SA+ +T G ++ Y +++
Sbjct: 1 MIKGVLKTWKEDRGFGFISPDD---GGKDIFIHISALKGTSRRPVT-GDVIYYQVARDNR 56
Query: 62 NGKYSAEN-----LKLVPKSS 77
GKY A N ++++ +
Sbjct: 57 -GKYKAINAHIEGVEILEDKA 76
>gi|330937547|gb|EGH41489.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 40
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
G++KW+N +KG+GFITP +SGDD+F+H A+ S G
Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDG 40
>gi|118615949|ref|YP_904281.1| DNA-binding protein [Mycobacterium ulcerans Agy99]
gi|118568059|gb|ABL02810.1| DNA-binding protein [Mycobacterium ulcerans Agy99]
Length = 135
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I ++ +GYGFI P+ G+DVFLH + + L G V++D
Sbjct: 1 MRGTGRIVRFDDVRGYGFIAPDS---GGEDVFLHANDLDFDRLLA-KRGTRVSFDIEDGP 56
Query: 61 ANGKYSAENLK 71
+A +
Sbjct: 57 RGKFATAVLIT 67
>gi|116492939|ref|YP_804674.1| cold-shock DNA-binding protein family protein [Pediococcus
pentosaceus ATCC 25745]
gi|116103089|gb|ABJ68232.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus
ATCC 25745]
Length = 69
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+++ ++ +KGYGFI T SGD VF H + + S L G+ V
Sbjct: 1 METGTVESFDKEKGYGFIE----TASGDKVFAHYTVIQSEDYKTLEVGEKVKLMLADGPK 56
Query: 62 N 62
Sbjct: 57 G 57
>gi|184155059|ref|YP_001843399.1| putative cold shock protein [Lactobacillus fermentum IFO 3956]
gi|183226403|dbj|BAG26919.1| putative cold shock protein [Lactobacillus fermentum IFO 3956]
Length = 70
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ + +IK Y+P KG+G+IT T DV+ HR A+ + +GQ V VQ
Sbjct: 1 MIQATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQR 56
Query: 62 NGKYSAENLKLVPKS 76
A ++ ++ +
Sbjct: 57 G--PQAAHVTIMQRG 69
>gi|296237954|ref|XP_002763968.1| PREDICTED: hypothetical protein LOC100400889 [Callithrix jacchus]
Length = 297
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 214 KGVCKQFSRAQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 268
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 269 QKFQAVEVVLTQLAP 283
>gi|260663603|ref|ZP_05864492.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
gi|260551829|gb|EEX24944.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length = 70
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ + +IK Y+P KG+G+IT T DV+ HR A+ + +GQ V VQ
Sbjct: 1 MIQATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQR 56
Query: 62 NGKYSAENLKLVPKS 76
A ++ ++ +
Sbjct: 57 G--PQAAHVTIMQRE 69
>gi|56477051|ref|YP_158640.1| cold shock family protein [Aromatoleum aromaticum EbN1]
gi|56313094|emb|CAI07739.1| probable cold shock family protein [Aromatoleum aromaticum EbN1]
Length = 189
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G++ KW N D+G+GFI P+ G +VF+H SA G G+ ++++ +
Sbjct: 1 MRIEGTLGKW-NDDRGFGFIVPKD---GGPEVFVHVSAFPRDGRR-PQIGEPLSFEI-EL 54
Query: 60 DANGKYSAENLK 71
D + K A +
Sbjct: 55 DKDRKKRAVGVS 66
>gi|86145147|ref|ZP_01063478.1| hypothetical protein MED222_04500 [Vibrio sp. MED222]
gi|85836724|gb|EAQ54844.1| hypothetical protein MED222_04500 [Vibrio sp. MED222]
Length = 84
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG I W++ + G+GF P+ DV +H S + G N+ EGQ V + +
Sbjct: 7 TRGYITWFHLENGFGFAKPD---HGDIDVLIHISVIEFDGEINVEEGQRVYMELEEVKGK 63
Query: 63 GKYSAENLKLVP 74
++A +K++P
Sbjct: 64 PHWNA--VKVLP 73
>gi|15790740|ref|NP_280564.1| cold shock protein [Halobacterium sp. NRC-1]
gi|169236482|ref|YP_001689682.1| cold shock protein [Halobacterium salinarum R1]
gi|10581282|gb|AAG20044.1| cold shock protein [Halobacterium sp. NRC-1]
gi|167727548|emb|CAP14336.1| putative cold shock protein [Halobacterium salinarum R1]
Length = 69
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + D+ + G +L EGQ V +D +
Sbjct: 1 MASGKVDFFNDTGGYGFISTDADDVDDDEDVFFH--MEDVGGPDLEEGQEVEFDIESSPK 58
Query: 62 NGKYSAENL 70
+ A NL
Sbjct: 59 GPR--ATNL 65
>gi|332184237|gb|AEE26491.1| Cold shock protein [Francisella cf. novicida 3523]
Length = 143
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
+G++K+YN DKGYGFI E S D F + + + G V ++ Q+
Sbjct: 2 QGTVKFYNKDKGYGFIYSEESE---KDFFFSINDWKN---PTVPNGSDDVEFEVAQSKKG 55
Query: 63 GKYSAENLKLVPKSSN 78
K A ++KL+ + +
Sbjct: 56 EK--AISIKLLKSAED 69
>gi|110667237|ref|YP_657048.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
gi|109624984|emb|CAJ51397.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
Length = 64
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + + + VF H V G +L EGQ V ++ Q+
Sbjct: 1 MAEGKVDFFNDTGGYGFISTDDTDDD---VFFHMEDV---GGPDLEEGQEVEFEIEQSPK 54
Query: 62 NGKYS 66
+ +
Sbjct: 55 GPRAA 59
>gi|197336120|ref|YP_002156153.1| cold-shock DNA-binding domain protein [Vibrio fischeri MJ11]
gi|197317610|gb|ACH67057.1| cold-shock DNA-binding domain protein [Vibrio fischeri MJ11]
Length = 195
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +N KGYGFI+ VFLH S + + G V++D + G
Sbjct: 2 KGRVVEWNDSKGYGFISALNGELK---VFLHISKLKNKNRR-PKIGDEVSFDINEEIK-G 56
Query: 64 KYSAENLKLV 73
+++A N+ +V
Sbjct: 57 RFNANNVSIV 66
>gi|183980071|ref|YP_001848362.1| DNA-binding protein [Mycobacterium marinum M]
gi|183173397|gb|ACC38507.1| DNA-binding protein [Mycobacterium marinum M]
Length = 135
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I ++ +GYGFI P+ G+DVFLH + + L G V++D
Sbjct: 1 MRGTGRIVRFDDVRGYGFIAPDS---GGEDVFLHANDLDFDRLLA-KRGTRVSFDIEDGP 56
Query: 61 ANGKYSAENLK 71
+A +
Sbjct: 57 RGKFATAVLIT 67
>gi|89256155|ref|YP_513517.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
holarctica LVS]
gi|156502190|ref|YP_001428255.1| cold shock DNA-binding domain-containing protein [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|167010573|ref|ZP_02275504.1| cold shock protein [Francisella tularensis subsp. holarctica
FSC200]
gi|254367479|ref|ZP_04983505.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
holarctica 257]
gi|290953272|ref|ZP_06557893.1| cold shock DNA-binding domain-containing protein [Francisella
tularensis subsp. holarctica URFT1]
gi|295313478|ref|ZP_06804074.1| cold shock DNA-binding domain-containing protein [Francisella
tularensis subsp. holarctica URFT1]
gi|89143986|emb|CAJ79219.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
holarctica LVS]
gi|134253295|gb|EBA52389.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
holarctica 257]
gi|156252793|gb|ABU61299.1| cold shock DNA-binding domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 143
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
+G +K+YN DKGYGFI E S D F + + + G V ++ Q+
Sbjct: 2 QGIVKFYNKDKGYGFIYSEESE---KDFFFSINDWKN---PTVPNGSDDVEFEVAQSKKG 55
Query: 63 GKYSAENLKLVPKSSN 78
K A N+KL+ + +
Sbjct: 56 EK--AINIKLLKSAED 69
>gi|261379495|ref|ZP_05984068.1| cold shock protein [Neisseria subflava NJ9703]
gi|284797958|gb|EFC53305.1| cold shock protein [Neisseria subflava NJ9703]
Length = 198
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +KW++ KGYG+I E G + + + A L G VT++ +
Sbjct: 2 NGKVKWFSESKGYGYIVSE----EGKEYYFTVKHIQGAELP--HNGDAVTFEARTSKRG- 54
Query: 64 KYSAENLKLVPKSSN 78
A + + K+S
Sbjct: 55 -PVAGTVVITEKASE 68
>gi|297709000|ref|XP_002831236.1| PREDICTED: cold shock domain-containing protein C2-like isoform 1
[Pongo abelii]
Length = 222
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 139 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 193
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 194 QKFQAVEVVLTQLAP 208
>gi|119580846|gb|EAW60442.1| cold shock domain containing C2, RNA binding [Homo sapiens]
Length = 222
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 139 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 193
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 194 QKFQAVEVVLTQLAP 208
>gi|6114756|emb|CAA62001.2| PIPPin protein [Rattus norvegicus]
Length = 227
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 144 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 198
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 199 QKFQAVEVVLTQLAP 213
>gi|157871626|ref|XP_001684362.1| RNA binding protein rbp16 [Leishmania major strain Friedlin]
gi|68127431|emb|CAJ05173.1| putative RNA binding protein rbp16 [Leishmania major strain
Friedlin]
Length = 142
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
+++ G + + +G+GFI F+H SA+ + G L Q V ++
Sbjct: 16 LLNTGKVVSWMSGRGFGFIE---DNADKKQHFVHFSALQTETGGYRALAVDQEVEFEVAS 72
Query: 59 NDANGKYSAENLK-----LVPKSS 77
D G+ AEN+ +P
Sbjct: 73 QD--GRTRAENVTAPGGGKLPSGP 94
>gi|83749695|ref|ZP_00946674.1| Cold shock protein [Ralstonia solanacearum UW551]
gi|83723620|gb|EAP70819.1| Cold shock protein [Ralstonia solanacearum UW551]
Length = 82
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTES 27
+ G++KW+N KG+GFITP+G
Sbjct: 43 MATGTVKWFNETKGFGFITPDGGGAD 68
>gi|327272546|ref|XP_003221045.1| PREDICTED: cold shock domain-containing protein C2-like [Anolis
carolinensis]
Length = 153
Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG +VTY N
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GTEDIFVHVSDIEGEYVP--VEGDVVTYKICPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTHLAP 139
>gi|120612145|ref|YP_971823.1| cold-shock DNA-binding domain-containing protein [Acidovorax
citrulli AAC00-1]
gi|120590609|gb|ABM34049.1| cold-shock DNA-binding domain protein [Acidovorax citrulli
AAC00-1]
Length = 224
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I +N +G+GFI P + GD VF+H A G GQ V + V+
Sbjct: 1 MQFDGVIASWNDARGFGFIEPL---QGGDPVFVHIKAFQG-GAPRPQAGQRVRF-AVEAG 55
Query: 61 ANGKYSAENLK 71
G+ A ++
Sbjct: 56 PGGRKRACRVE 66
>gi|28493015|ref|NP_787176.1| cold shock protein B [Tropheryma whipplei str. Twist]
gi|28572227|ref|NP_789007.1| cold shock protein B [Tropheryma whipplei TW08/27]
gi|28410358|emb|CAD66744.1| cold shock protein B [Tropheryma whipplei TW08/27]
gi|28476055|gb|AAO44145.1| cold shock protein B [Tropheryma whipplei str. Twist]
Length = 125
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++++YN ++G+GF+ + G+ VFL A+ G+ +L+ G V Y
Sbjct: 1 MPLGTVRFYNKERGFGFVVSDD----GESVFLPAKAL-PDGVSDLSPGTRVDYGAALGKK 55
Query: 62 NGKYSAENLKLVPKSS 77
+L+++ K
Sbjct: 56 G--SQVLSLRVLRKPP 69
>gi|317419174|emb|CBN81211.1| Cold shock domain-containing protein C2 [Dicentrarchus labrax]
Length = 157
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFI P + G+D+F+H S + + EG VTY N
Sbjct: 74 KGVCKNFSRSQGHGFIRP---SHGGEDIFVHISDIEGEYVP--MEGDEVTYKVCPIPPKN 128
Query: 63 GKYSAENLKL 72
K A ++ +
Sbjct: 129 QKIQAVDVVI 138
>gi|114046090|ref|YP_736640.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-7]
gi|113887532|gb|ABI41583.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
Length = 197
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG + +N +KG+GFI PE S G DVF+H + + L G + Y +
Sbjct: 1 MERGILVRWNDEKGFGFIQPEDS--KGKDVFIHITVLKHMARKPLV-GDSILYR-TEIQN 56
Query: 62 NGKYSAE 68
+GK A
Sbjct: 57 DGKVKAI 63
>gi|291410316|ref|XP_002721452.1| PREDICTED: cold shock domain containing C2, RNA binding-like
[Oryctolagus cuniculus]
Length = 200
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 117 KGICKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 171
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 172 QKFQAVEVVLTQLAP 186
>gi|292655387|ref|YP_003535284.1| cold shock protein [Haloferax volcanii DS2]
gi|291371490|gb|ADE03717.1| cold shock protein [Haloferax volcanii DS2]
Length = 64
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + ++ GYGFI + + DDVF H + +L EGQ V +D + D
Sbjct: 1 MAKGKVAFFKSSGGYGFIE---TDDHDDDVFFHMEDIEG---PDLEEGQEVEFDIEEADK 54
Query: 62 NGKYSAENLKLV 73
+ A N+ +
Sbjct: 55 GPR--ATNVTRL 64
>gi|154147690|ref|NP_001093718.1| cold shock domain containing C2, RNA binding [Xenopus (Silurana)
tropicalis]
gi|134025813|gb|AAI35982.1| csdc2 protein [Xenopus (Silurana) tropicalis]
Length = 151
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K ++ +G+GFITPE +D+F+H S + + EG VT+
Sbjct: 67 YKGVCKQFSRSQGHGFITPEN---GTEDIFVHISDIEGEYVP--VEGDEVTFKMCPIPPK 121
Query: 62 NGKYSAENL 70
N K+ A +
Sbjct: 122 NQKFQAVEV 130
>gi|126662142|ref|ZP_01733141.1| cold shock protein [Flavobacteria bacterium BAL38]
gi|126625521|gb|EAZ96210.1| cold shock protein [Flavobacteria bacterium BAL38]
Length = 148
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+I ++N KG+GFI E+G+ F+H S + L ++ EG LVTYD +
Sbjct: 89 GTIDFFNDSKGFGFIKA---VETGEKYFVHISGL----LDDVKEGNLVTYDLEKGAKG-- 139
Query: 65 YSAENLKLV 73
+A N+K +
Sbjct: 140 MNAVNVKKI 148
>gi|291235125|ref|XP_002737496.1| PREDICTED: calcium-regulated heat-stable protein (24kD)-like
[Saccoglossus kowalevskii]
Length = 130
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY-DYVQNDA 61
+G++K++ KG+GFIT E+ +++F+H S + + + G VTY + +
Sbjct: 46 KKGTVKYFCRHKGHGFITQA--EENAEELFVHISDIEGEYIPVV--GDQVTYKECLIPPK 101
Query: 62 NGKYSAENLKLVPKSSN 78
K A + + + +
Sbjct: 102 KTKTQAVEVIITHLAPD 118
>gi|149743340|ref|XP_001500375.1| PREDICTED: similar to RNA-binding protein pippin [Equus caballus]
Length = 153
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTQLAP 139
>gi|327280107|ref|XP_003224795.1| PREDICTED: calcium-regulated heat stable protein 1-like [Anolis
carolinensis]
Length = 149
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K ++ KG+GFITPE E G DVF+H S + + G +TY
Sbjct: 63 YKGVCKCFSRAKGHGFITPE---EGGLDVFVHISDIEGEYVP--VAGDEMTYKLTTVPPK 117
Query: 62 NGKYSAENLKLVPKSS 77
N + A + + +
Sbjct: 118 NDRLQAVEVVITHLAP 133
>gi|310815595|ref|YP_003963559.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
vulgare Y25]
gi|308754330|gb|ADO42259.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
vulgare Y25]
Length = 176
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ KG+GFI + D+ LH + + GL ++ EG +T +
Sbjct: 14 GHVKWYDATKGFGFIV---DPQGRSDILLHANVLRRFGLNSVGEGIEITVLVSRTPKG-- 68
Query: 65 YSAENL 70
A +
Sbjct: 69 AQAIEI 74
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+K ++ +G+GF GS DDVF+H + G +L +G+ + +
Sbjct: 107 RVKRFDRTRGFGFANVFGS---ADDVFIHIEVMREGGFSDLRQGEAICLRLIAGKRGPMA 163
Query: 66 SAE 68
A
Sbjct: 164 VAV 166
>gi|256784096|ref|ZP_05522527.1| DNA-binding protein [Streptomyces lividans TK24]
Length = 142
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
+ G + ++ +GYGFI PE G+DVFLH + + + + G +V ++
Sbjct: 1 MVAGRVVRFDGTRGYGFIAPED---GGEDVFLHVNDLLIPEESVRS---GLVVEFEVETG 54
Query: 60 DANGKYS 66
+ K S
Sbjct: 55 ERGLKAS 61
>gi|281485622|ref|NP_001164013.1| cold shock domain-containing protein C2 [Rattus norvegicus]
gi|293348837|ref|XP_001077363.2| PREDICTED: cold shock domain containing C2, RNA binding [Rattus
norvegicus]
gi|293360735|ref|XP_345861.4| PREDICTED: cold shock domain-containing protein C2 [Rattus
norvegicus]
gi|32129826|sp|Q63430|CSDC2_RAT RecName: Full=Cold shock domain-containing protein C2; AltName:
Full=RNA-binding protein PIPPin
gi|149065816|gb|EDM15689.1| cold shock domain containing C2, RNA binding [Rattus norvegicus]
Length = 154
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 71 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 125
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 126 QKFQAVEVVLTQLAP 140
>gi|292654154|ref|YP_003534052.1| cold shock protein [Haloferax volcanii DS2]
gi|291369791|gb|ADE02019.1| cold shock protein [Haloferax volcanii DS2]
Length = 68
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + D+ + G +LTEG V +D +
Sbjct: 1 MAHGKVDFFNDTGGYGFISTDDGDLDDDEDVFFH--MEDVGGDDLTEGTEVEFDIESSPK 58
Query: 62 NGKYSAENLK 71
+ +A ++
Sbjct: 59 GPR-AANVVR 67
>gi|322500418|emb|CBZ35495.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 143
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
+++ G + + +G+GFI F+H SA+ + G L Q V ++
Sbjct: 16 LLNTGKVVSWMSGRGFGFIE---DNADKRQHFVHFSALQTETGGYRALAVDQEVEFEVAS 72
Query: 59 NDANGKYSAENLK-----LVPKSS 77
D G+ AEN+ +P
Sbjct: 73 QD--GRTRAENVTAPGGGKLPSGP 94
>gi|301787827|ref|XP_002929327.1| PREDICTED: cold shock domain-containing protein C2-like [Ailuropoda
melanoleuca]
gi|281340937|gb|EFB16521.1| hypothetical protein PANDA_019484 [Ailuropoda melanoleuca]
Length = 153
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTQLAP 139
>gi|1402769|gb|AAC80251.1| major cold-shock protein [Proteus vulgaris]
Length = 47
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
DKG+GFITP+ ++ DVF+H SA+ S +L EGQ V++
Sbjct: 1 DKGFGFITPKDGSKD--DVFVHFSAIQSDSFKSLKEGQEVSFSIENGAK 47
>gi|148645028|gb|ABR01044.1| Csp [uncultured Geobacter sp.]
Length = 48
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
FI + G+DVF+H SA+ G +L EG VT++ V+ A N+
Sbjct: 1 FIEQDN----GEDVFVHFSAIQGEGFKSLAEGDTVTFEVVKGPKG--LQAANV 47
>gi|24307959|ref|NP_055275.1| cold shock domain-containing protein C2 [Homo sapiens]
gi|297709002|ref|XP_002831237.1| PREDICTED: cold shock domain-containing protein C2-like isoform 2
[Pongo abelii]
gi|32129852|sp|Q9Y534|CSDC2_HUMAN RecName: Full=Cold shock domain-containing protein C2; AltName:
Full=RNA-binding protein PIPPin
gi|5304854|emb|CAB46024.1| cold shock domain containing C2, RNA binding [Homo sapiens]
gi|5931606|dbj|BAA84704.1| RNA-binding protein PIPPin [Homo sapiens]
gi|45501284|gb|AAH67113.1| CSDC2 protein [Homo sapiens]
gi|47678445|emb|CAG30343.1| dJ347H13.2 [Homo sapiens]
gi|57997216|emb|CAD39079.2| hypothetical protein [Homo sapiens]
gi|109451154|emb|CAK54438.1| CSDC2 [synthetic construct]
gi|109451732|emb|CAK54737.1| CSDC2 [synthetic construct]
gi|190689775|gb|ACE86662.1| cold shock domain containing C2, RNA binding protein [synthetic
construct]
gi|190691143|gb|ACE87346.1| cold shock domain containing C2, RNA binding protein [synthetic
construct]
gi|306921241|dbj|BAJ17700.1| cold shock domain containing C2, RNA binding [synthetic construct]
Length = 153
Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTQLAP 139
>gi|223992615|ref|XP_002285991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977306|gb|EED95632.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 50
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G++KWYN ++G+GFI + G D+++H + + G L E + V +
Sbjct: 2 TGTVKWYNAERGFGFIAIDD---GGADMYVHATGLTFDG--PLIENERVGFTTE 50
>gi|88803163|ref|ZP_01118689.1| cold shock protein, putative DNA-binding protein [Polaribacter
irgensii 23-P]
gi|88780729|gb|EAR11908.1| cold shock protein, putative DNA-binding protein [Polaribacter
irgensii 23-P]
Length = 150
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +++ KG+GFI E+ + F H S + + ++ E V+++ +
Sbjct: 90 KGKVSFFDSSKGFGFII---DMENNEKYFTHVSGL----IDDIVENDKVSFELERGMRG- 141
Query: 64 KYSAENLKLV 73
+A + +
Sbjct: 142 -MNAVKVTKI 150
>gi|262373694|ref|ZP_06066972.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262311447|gb|EEY92533.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 205
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ KGYGFI P + VFLH A G L G + Y + +
Sbjct: 1 MRDQGRLVEWFDD-KGYGFIQPNDKHKD--RVFLHIKDFARTGPRPLV-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G+Y A+ + + +
Sbjct: 57 ER-GRYRAQQVSYLKAA 72
>gi|161611902|gb|AAI55634.1| LOC557375 protein [Danio rerio]
Length = 162
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFI P GDD+F H S + + EG VTY N
Sbjct: 79 KGVCKDFSRSQGHGFIKPA---HGGDDIFFHISDIEGEYVP--VEGDEVTYKVCLIPPKN 133
Query: 63 GKYSAENLKL 72
K A + +
Sbjct: 134 VKVQAVEVTI 143
>gi|331701069|ref|YP_004398028.1| Cold-shock protein DNA-binding protein [Lactobacillus buchneri
NRRL B-30929]
gi|329128412|gb|AEB72965.1| Cold-shock protein DNA-binding protein [Lactobacillus buchneri
NRRL B-30929]
Length = 69
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G IK YNP +GFIT + DD+F ++A + G+ V Y V
Sbjct: 1 MLKGKIKSYNPQNAFGFITQDSGE---DDLFFFKNAFPEDQYGTIQVGKPVEYVVVAGQK 57
Query: 62 NGKYSAENLKLVPK 75
A ++
Sbjct: 58 G--PQAAKAHVIED 69
>gi|126343688|ref|XP_001363729.1| PREDICTED: similar to Cold shock domain containing C2, RNA binding
[Monodelphis domestica]
Length = 154
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 71 KGVCKQFSRSQGHGFITPEN---GTEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 125
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 126 QKFQAVEVVLTHLAP 140
>gi|90075002|dbj|BAE87181.1| unnamed protein product [Macaca fascicularis]
Length = 153
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTQLAP 139
>gi|255965396|gb|ACU45003.1| cold shock protein [Pfiesteria piscicida]
Length = 80
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G++K YNP KG+GFI G DVF+H V G G +V+++ ++
Sbjct: 1 MSCQGTVKSYNPAKGWGFI-----DYEGQDVFIH---VKDCGGAAPVAGDVVSFEVEKDP 52
Query: 61 -ANGKYSAENLK 71
G A ++
Sbjct: 53 VRGGAMKASSVT 64
>gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
Length = 311
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G ++++ ++G+G+ITP +G+D+F+H S V + +G VTY
Sbjct: 218 GRVRYFCRERGHGYITPLDQNPAGEDIFVHISDVEGD--YAPHDGDEVTYKLCPIPPKFE 275
Query: 64 KYSAENLKL 72
K A ++ L
Sbjct: 276 KMQAVHVVL 284
>gi|296313742|ref|ZP_06863683.1| cold-shock DNA-binding domain protein [Neisseria polysaccharea
ATCC 43768]
gi|296839665|gb|EFH23603.1| cold-shock DNA-binding domain protein [Neisseria polysaccharea
ATCC 43768]
Length = 191
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDANGK 64
+KW + +KGYGFI +G ++F H S + L E V+++ V + G+
Sbjct: 5 IVKW-DDEKGYGFIRIDG---GNKEIFCHISDFLQRNPRPGLDE--QVSFEVVSDGK-GR 57
Query: 65 YSAENLKLV 73
+SA+ ++ +
Sbjct: 58 FSAKQIRYL 66
>gi|146091785|ref|XP_001470120.1| RNA binding protein rbp16 [Leishmania infantum]
gi|134084914|emb|CAM69312.1| putative RNA binding protein rbp16 [Leishmania infantum JPCM5]
Length = 143
Score = 54.3 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
+++ G + + +G+GFI F+H SA+ + G L Q V ++
Sbjct: 16 LLNTGKVVSWMSGRGFGFIE---DNADKRQHFVHFSALQTETGGYRALAVDQEVEFEVA- 71
Query: 59 NDANGKYSAENLK-----LVPKSS 77
+G+ AEN+ +P
Sbjct: 72 -SQDGRTRAENVTAPGGGKLPSGP 94
>gi|239981577|ref|ZP_04704101.1| putative DNA binding protein [Streptomyces albus J1074]
Length = 159
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G I ++ +GYGFI P E G+DVF+H + + G+ V + +
Sbjct: 1 MLKTGKILRFDEVRGYGFIVP---NEGGEDVFMHANDLVDEKYLY-QSGREVEFFEEMGE 56
Query: 61 ANGKYSAENLKLVPKSS 77
K A ++LV +SS
Sbjct: 57 KGPK--ASQIRLVYRSS 71
>gi|170045455|ref|XP_001850324.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167868493|gb|EDS31876.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 120
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G ++ ++ KG+GFI P GDD+F+H S V + G V+Y
Sbjct: 23 EEGKVRSFSRSKGHGFIEPAS---GGDDIFVHISDVEGEYVP--LPGDEVSYRLCFIPPK 77
Query: 63 -GKYSAENLKLVPKSSN 78
K A ++++ +
Sbjct: 78 FEKTQAIHVQITHLTPE 94
>gi|269139514|ref|YP_003296215.1| cold shock-like protein [Edwardsiella tarda EIB202]
gi|267985175|gb|ACY85004.1| cold shock-like protein [Edwardsiella tarda EIB202]
gi|304559403|gb|ADM42067.1| Cold shock protein CspI [Edwardsiella tarda FL6-60]
Length = 69
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+P G G I+P GDD++++R+ +ASA L EGQ V + + +
Sbjct: 6 GFVKWYDPSAGLGVISPLD---GGDDLYVNRTGIASARNKLLREGQRVEFSTPRGRRS-- 60
Query: 65 YSAENL 70
AE++
Sbjct: 61 QMAEDV 66
>gi|257051473|ref|YP_003129306.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
gi|256690236|gb|ACV10573.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
Length = 78
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + D+ + G +LTEG V +D +
Sbjct: 11 MANGKVDFFNDTGGYGFISTDDGDLDEDEDVFFH--MEDVGGEDLTEGTEVEFDIESSPK 68
Query: 62 NGKYSAENL 70
+ A NL
Sbjct: 69 GPR--AANL 75
>gi|212697052|ref|ZP_03305180.1| hypothetical protein ANHYDRO_01617 [Anaerococcus hydrogenalis DSM
7454]
gi|212675827|gb|EEB35434.1| hypothetical protein ANHYDRO_01617 [Anaerococcus hydrogenalis DSM
7454]
Length = 68
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDANG 63
G +K+++ KG+GFI E D F H S + S + G V +D
Sbjct: 3 GKVKFFDEKKGFGFIESESG-----DYFFHYSEIISDKDYKTIENGARVEFDVKDLGRGD 57
Query: 64 KYSAENLKL 72
+A N+K
Sbjct: 58 --TAFNVKK 64
>gi|332293352|ref|YP_004431961.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332171438|gb|AEE20693.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 148
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +++++ KG+GFI + + F+H S V L EG V+Y+ +
Sbjct: 86 TGFVEFFDSSKGFGFIKDAD---TPEKYFVHISEVRDG---ELKEGNKVSYEIERGQKG- 138
Query: 64 KYSAENLKLV 73
+A + V
Sbjct: 139 -MNAVRVSKV 147
>gi|69246243|ref|ZP_00603856.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
gi|68195344|gb|EAN09793.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
Length = 35
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
+ G++KW+N +KG+GFI+ E G DVF+H SA+
Sbjct: 1 MENGTVKWFNAEKGFGFISRED----GSDVFVHFSAIPR 35
>gi|300709891|ref|YP_003735705.1| cold-shock DNA-binding domain protein [Halalkalicoccus jeotgali
B3]
gi|299123574|gb|ADJ13913.1| cold-shock DNA-binding domain protein [Halalkalicoccus jeotgali
B3]
Length = 68
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++N GYGFI+ + D+ + G +LTEG V +D +
Sbjct: 1 MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFH--MEDVGGEDLTEGTEVEFDIESSPK 58
Query: 62 NGKYSAENLK 71
+ +A ++
Sbjct: 59 GPR-AANVVR 67
>gi|50540448|ref|NP_001002690.1| cold shock domain-containing protein C2 [Danio rerio]
gi|49903205|gb|AAH76447.1| Cold shock domain containing C2, RNA binding [Danio rerio]
gi|182891632|gb|AAI64903.1| Csdc2 protein [Danio rerio]
Length = 153
Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDA 61
++G K ++ +G+GFI P + G+D+F+H S + + EG VTY
Sbjct: 69 YKGICKNFSRSQGHGFIRP---SHGGEDIFVHISDIEGEYVP--MEGDEVTYKVCPVPPK 123
Query: 62 NGKYSAENLKL 72
N K+ A + +
Sbjct: 124 NIKFQAVEVVI 134
>gi|291220834|ref|XP_002730428.1| PREDICTED: cold shock domain containing E1, RNA binding-like
[Saccoglossus kowalevskii]
Length = 816
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GFI E +F H S V L G V + VQN +GKYSA N
Sbjct: 701 DSVKGQFGFIDYEVGE-DNKKLFFHMSEVQEG--TELQPGDEVEFVIVQNQRSGKYSACN 757
Query: 70 LKLVPK 75
++ + K
Sbjct: 758 VRRISK 763
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +F H S + N+ G V +D + GK A ++ + +
Sbjct: 52 YGFIQCAERDT---RLFFHYSQYDGN-IENMNIGDEVEFDTSVDRRTGKPIACHIVKLRQ 107
Query: 76 SS 77
S
Sbjct: 108 GS 109
>gi|225011114|ref|ZP_03701577.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-3C]
gi|225004748|gb|EEG42707.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
MS024-3C]
Length = 152
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + +++ KG+GFI S + F+H S + + + E V+++ +
Sbjct: 92 TGKVSFFDASKGFGFIIDAVSQ---EKHFVHVSGL----IDEIMENDKVSFELERGQKG- 143
Query: 64 KYSAENLKL 72
+A +
Sbjct: 144 -MNAVKVTK 151
>gi|239994473|ref|ZP_04714997.1| integral membrane protein [Alteromonas macleodii ATCC 27126]
Length = 165
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G I+ ++ KGYGF+ P G G F H A + G ++ Y+ Q D
Sbjct: 1 MKYQGRIQQWDDAKGYGFVEPNG---GGTRAFTHIKAFKQRSRRPVN-GDIIVYEVEQ-D 55
Query: 61 ANGKYSAENLKLVPK 75
NG + A N+ L+
Sbjct: 56 RNGNHRACNISLLKD 70
>gi|330466661|ref|YP_004404404.1| putative DNA binding protein [Verrucosispora maris AB-18-032]
gi|328809632|gb|AEB43804.1| putative DNA binding protein [Verrucosispora maris AB-18-032]
Length = 135
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I ++ +GYGFI P + G+DVF+H + + G V ++ V +D
Sbjct: 2 GKIIRFDEVRGYGFIAP---SAGGEDVFVHANDF-GEHRHLVRVGLPVEFEAVDSDRG-- 55
Query: 65 YSAENLKLVPKSS 77
A ++++V
Sbjct: 56 LKAASVRIVESEP 68
>gi|323452903|gb|EGB08776.1| hypothetical protein AURANDRAFT_63880 [Aureococcus anophagefferens]
Length = 2082
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K ++ K YGFI + G ++F+H + V G L G VTY G+
Sbjct: 243 GMVKSFD--KVYGFIAEDA----GGEMFVHIADVR--GRRELKRGDRVTYSVA--PFRGR 292
Query: 65 YSAENLKL 72
A N+++
Sbjct: 293 PKAVNVEV 300
>gi|297668993|ref|XP_002812703.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
Length = 254
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW+N G+G + T ++ DVF+H+S + +L EG+ V + + ++
Sbjct: 94 GICKWFNLFMGFGLLYVTACTVVALDTPVDVFVHQSKLHMEDFRSLKEGEAVEFTFKKSA 153
Query: 61 AN 62
Sbjct: 154 KG 155
>gi|85703578|ref|ZP_01034682.1| cold shock DNA-binding domain protein [Roseovarius sp. 217]
gi|85672506|gb|EAQ27363.1| cold shock DNA-binding domain protein [Roseovarius sp. 217]
Length = 151
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW++ KG+GF + +DVF+H + +GL ++ G+ + + + G+
Sbjct: 81 RVKWFDKGKGFGF---ANTFGREEDVFVHVEVLRRSGLADVQPGEALAIRVI-DGKRGRM 136
Query: 66 SAEN 69
+ E
Sbjct: 137 ATEV 140
>gi|331698343|ref|YP_004334582.1| Cold-shock protein DNA-binding protein [Pseudonocardia
dioxanivorans CB1190]
gi|326953032|gb|AEA26729.1| Cold-shock protein DNA-binding protein [Pseudonocardia
dioxanivorans CB1190]
Length = 66
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ W++P + G IT + G +V + + + G +L G VT+ V+
Sbjct: 1 MVDGTVTWFDPRRRIGVITLDD----GTEVSVSGAQIDGGGQQSLCPGDRVTFTLVEGPD 56
Query: 62 NG 63
Sbjct: 57 GP 58
>gi|157376410|ref|YP_001475010.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3]
gi|157318784|gb|ABV37882.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3]
Length = 274
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 4 RGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G++ + DKG+GFI PE T+S D+F+H S + L EG + + ++
Sbjct: 7 KGTLVRWKDDKGFGFIEPETGSGTDSHTDIFIHVSQLRHMSRRPL-EGDTIFFQI-EHKP 64
Query: 62 NGKYSAENLKL 72
GK +A ++
Sbjct: 65 GGKLNAIEARI 75
>gi|311255011|ref|XP_001928274.2| PREDICTED: cold shock domain-containing protein C2-like [Sus
scrofa]
Length = 153
Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 124
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 125 QKFQAVEVVLTQLAP 139
>gi|289767977|ref|ZP_06527355.1| DNA-binding protein [Streptomyces lividans TK24]
gi|289698176|gb|EFD65605.1| DNA-binding protein [Streptomyces lividans TK24]
Length = 162
Score = 53.5 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI PE G+DVFLH + + ++ G +V ++ +
Sbjct: 21 MVAGRVVRFDGTRGYGFIAPED---GGEDVFLHVNDLLIPE-ESVRSGLVVEFEVETGER 76
Query: 62 NGKYS 66
K S
Sbjct: 77 GLKAS 81
>gi|3121926|sp|Q48493|CSPA_KLEPN RecName: Full=Major cold shock protein
gi|1402753|gb|AAC80243.1| major cold-shock protein [Klebsiella pneumoniae]
Length = 46
Score = 53.5 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
KG+GFI+P+ DVF+H SA+ S L EGQ V++
Sbjct: 1 SKGFGFISPKD---GSKDVFVHFSAIQSDSFKTLNEGQEVSFTIENGAK 46
>gi|322493163|emb|CBZ28448.1| putative RNA binding protein rbp16 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 142
Score = 53.5 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
+++ G + + +G+GFI F+H SA+ + G L Q V ++
Sbjct: 16 LLNTGKVVSWMSGRGFGFIE---DNADKRQHFVHFSALQTETGGYRALAVDQEVEFEVAS 72
Query: 59 NDANGKYSAENLK-----LVPKSS 77
D G+ AEN+ +P
Sbjct: 73 QD--GRTRAENVTAPGGGKLPSGP 94
>gi|254703775|ref|ZP_05165603.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 3
str. 686]
Length = 72
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
+ G++K++N KG+GFI P+ DVF+H S
Sbjct: 1 MANGTVKFFNSTKGFGFIQPDD---GSSDVFVHIS 32
>gi|332874259|ref|ZP_08442179.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6014059]
gi|323519689|gb|ADX94070.1| hypothetical protein ABTW07_3653 [Acinetobacter baumannii
TCDC-AB0715]
gi|332737543|gb|EGJ68450.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6014059]
Length = 209
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|260556872|ref|ZP_05829089.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
baumannii ATCC 19606]
gi|260409478|gb|EEX02779.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
baumannii ATCC 19606]
Length = 209
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|184159755|ref|YP_001848094.1| hypothetical protein ACICU_03438 [Acinetobacter baumannii ACICU]
gi|239502018|ref|ZP_04661328.1| hypothetical protein AbauAB_06855 [Acinetobacter baumannii AB900]
gi|183211349|gb|ACC58747.1| predicted membrane protein [Acinetobacter baumannii ACICU]
gi|193078601|gb|ABO13633.2| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|322509668|gb|ADX05122.1| Putative cold shock protein [Acinetobacter baumannii 1656-2]
Length = 209
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|169794439|ref|YP_001712232.1| putative cold shock protein [Acinetobacter baumannii AYE]
gi|213158987|ref|YP_002320985.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
AB0057]
gi|215482028|ref|YP_002324210.1| hypothetical protein ABBFA_000271 [Acinetobacter baumannii
AB307-0294]
gi|301345651|ref|ZP_07226392.1| hypothetical protein AbauAB0_05388 [Acinetobacter baumannii
AB056]
gi|301512340|ref|ZP_07237577.1| hypothetical protein AbauAB05_12182 [Acinetobacter baumannii
AB058]
gi|301596165|ref|ZP_07241173.1| hypothetical protein AbauAB059_10134 [Acinetobacter baumannii
AB059]
gi|332851923|ref|ZP_08433809.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013150]
gi|332868841|ref|ZP_08438434.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013113]
gi|169147366|emb|CAM85227.1| putative cold shock protein [Acinetobacter baumannii AYE]
gi|213058147|gb|ACJ43049.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
AB0057]
gi|213987995|gb|ACJ58294.1| conserved hypothetical protein [Acinetobacter baumannii
AB307-0294]
gi|332729616|gb|EGJ60953.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013150]
gi|332733094|gb|EGJ64293.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013113]
Length = 209
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|255513631|gb|EET89896.1| cold-shock DNA-binding domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 57
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N ++G+GFIT E G D+++H +A+ G L G V Y+ Q + + A+
Sbjct: 2 FNSERGFGFITGED----GKDIYVHSTAI--EGGATLAVGDAVEYEVEQAERGPR--AKK 53
Query: 70 LKLV 73
+K +
Sbjct: 54 VKKI 57
>gi|157873211|ref|XP_001685119.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68128190|emb|CAJ08321.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 461
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 42/115 (36%)
Query: 3 HRGSIKWYNPDKGYGFIT-------PEGSTESG--------------------------- 28
+ G +K YNP++G+GF+T + S
Sbjct: 335 YEGFVKRYNPNRGFGFLTATTHVTVVNDGSNSDSATGTPIASLNNTTTAVPTTGEAETPK 394
Query: 29 --------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
D+F+H+S++ G L G V + D A N++L+P+
Sbjct: 395 EYRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFCIGYKDGQQTLQAVNVELLPQ 449
>gi|294649475|ref|ZP_06726899.1| cold-shock DNA-binding protein family protein [Acinetobacter
haemolyticus ATCC 19194]
gi|292824645|gb|EFF83424.1| cold-shock DNA-binding protein family protein [Acinetobacter
haemolyticus ATCC 19194]
Length = 231
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G IK YN D+G+GFI E D+F H + G G+LV + V++
Sbjct: 1 MFLTGKIKNYNSDRGFGFIEVE---HDRSDIFFHITDFPKIG-GEPKTGELVKFLIVED- 55
Query: 61 ANGKYSAENLKLVP 74
GK+ A ++ +
Sbjct: 56 -KGKFKATDIVRLD 68
>gi|260566972|ref|ZP_05837442.1| LOW QUALITY PROTEIN: ATP/GTP-binding site-containing protein A
[Brucella suis bv. 4 str. 40]
gi|261754421|ref|ZP_05998130.1| LOW QUALITY PROTEIN: cold shock protein cspA [Brucella suis bv. 3
str. 686]
gi|260156490|gb|EEW91570.1| LOW QUALITY PROTEIN: ATP/GTP-binding site-containing protein A
[Brucella suis bv. 4 str. 40]
gi|261744174|gb|EEY32100.1| LOW QUALITY PROTEIN: cold shock protein cspA [Brucella suis bv. 3
str. 686]
Length = 69
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
+ G++K++N KG+GFI P+ DVF+H S
Sbjct: 1 MANGTVKFFNSTKGFGFIQPDD---GSSDVFVHIS 32
>gi|16125636|ref|NP_420200.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
gi|13422744|gb|AAK23368.1| cold-shock domain family protein [Caulobacter crescentus CB15]
Length = 64
Score = 53.5 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
KW+N KGYGF+ + D+F+H + GL +L G V + +
Sbjct: 2 KWFNRTKGYGFVIRD---AEPGDIFVHIETLRRGGLEDLQPGDDVLVRFARGPKG 53
>gi|257051748|ref|YP_003129581.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
gi|256690511|gb|ACV10848.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
Length = 64
Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + +++ GYGFI + DDVF H V+ +L EGQ + +D Q +
Sbjct: 1 MANGKVDFFHDTGGYGFIETADA---DDDVFFHMEDVSG---PDLEEGQDIEFDIEQAEK 54
Query: 62 NGKYSAENL 70
+ A N+
Sbjct: 55 GPR--ATNV 61
>gi|297261183|ref|XP_001100705.2| PREDICTED: cold shock domain-containing protein C2-like [Macaca
mulatta]
Length = 116
Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S + + EG VTY N
Sbjct: 33 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDIEGEYVP--VEGDEVTYKMCPIPPKN 87
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 88 QKFQAVEVVLTQLAP 102
>gi|111221830|ref|YP_712624.1| putative DNA binding protein [Frankia alni ACN14a]
gi|111149362|emb|CAJ61051.1| putative DNA binding protein [Frankia alni ACN14a]
Length = 137
Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI P GDD+FLH + + + G + ++ + +
Sbjct: 1 MSTGKVLRFDHVRGYGFIAPSD---GGDDIFLHANDLLVEK-NLVVPGTFMEFEVEEGER 56
Query: 62 NGKYSAENLKLV 73
A + ++V
Sbjct: 57 G--LKASSARIV 66
>gi|260550786|ref|ZP_05824993.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
gi|260406096|gb|EEW99581.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
Length = 209
Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|192360925|ref|YP_001982618.1| Cold-shock' DNA-binding domain-containing protein [Cellvibrio
japonicus Ueda107]
gi|190687090|gb|ACE84768.1| 'Cold-shock' DNA-binding domain protein [Cellvibrio japonicus
Ueda107]
Length = 106
Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ ++K + DKGYGF+ E D+ +H S + + L G+ V +D N
Sbjct: 1 MKT-TVKCWFADKGYGFLN--NGGEFSKDIMVHVSELKNCEY--LKPGRTVEFDCDFNQK 55
Query: 62 NGKYSAENLKLVPKSSN 78
A+N+ LV + +
Sbjct: 56 G--LIAKNVHLVYEEQS 70
>gi|253566037|ref|ZP_04843491.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251945141|gb|EES85579.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 146
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I+++N KGYGF+ +G+ F H S+ + EG VT++ +
Sbjct: 85 GRIEYFNAAKGYGFVKDAD---NGEKYFFHISSAP----TTIAEGDRVTFEIERGMRG-- 135
Query: 65 YSAENLKLVPK 75
+A + +V +
Sbjct: 136 MNAVRISIVTE 146
>gi|53714928|ref|YP_100920.1| putative DNA-binding protein [Bacteroides fragilis YCH46]
gi|52217793|dbj|BAD50386.1| putative DNA-binding protein [Bacteroides fragilis YCH46]
Length = 146
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I+++N KGYGF+ +G+ F H S+ + + EG VT++ +
Sbjct: 85 GRIEYFNAAKGYGFVKDAD---NGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG-- 135
Query: 65 YSAENLKLVPK 75
+A + +V +
Sbjct: 136 MNAVRISIVTE 146
>gi|116621692|ref|YP_823848.1| cold-shock DNA-binding protein family protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116224854|gb|ABJ83563.1| cold-shock DNA-binding protein family [Candidatus Solibacter
usitatus Ellin6076]
Length = 144
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
GS+ Y KG+GF+ P+ G D+F H S ++ +L G V Y+ D
Sbjct: 69 QSGSVVTYFEAKGFGFLRPDD---GGRDIFFHVSRLSEGLATDLRPGTRVLYELGM-DRT 124
Query: 63 GKYSAENLKL 72
GK +A +L++
Sbjct: 125 GKMAASSLRI 134
>gi|265766785|ref|ZP_06094614.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263253162|gb|EEZ24638.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 146
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I+++N KGYGF+ G+ F H S+ + + EG VT++ +
Sbjct: 85 GRIEYFNAAKGYGFVKDADC---GEKYFFHISSAPA----TIAEGDRVTFEIERGMRG-- 135
Query: 65 YSAENLKLVPK 75
+A + +V +
Sbjct: 136 MNAVRISIVTE 146
>gi|146329050|ref|YP_001209092.1| cold-shock DNA-binding domain-containing protein [Dichelobacter
nodosus VCS1703A]
gi|146232520|gb|ABQ13498.1| cold-shock DNA-binding domain protein [Dichelobacter nodosus
VCS1703A]
Length = 210
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++ ++N DKG+GFI + E +VF H S A G V++ +G
Sbjct: 12 TGTVVYWNDDKGFGFI---DTNEKQANVFFHISHFAYENRR-PQRGDKVSFLRSPEQTSG 67
Query: 64 KYSAENLKL 72
K SA+ + +
Sbjct: 68 KPSAKRVVI 76
>gi|254381040|ref|ZP_04996405.1| hypothetical protein SSAG_00707 [Streptomyces sp. Mg1]
gi|194339950|gb|EDX20916.1| hypothetical protein SSAG_00707 [Streptomyces sp. Mg1]
Length = 95
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G +KW++ +G G I+ EG+ G D+ SA+ L +G+ V +D +
Sbjct: 1 MSPCGVVKWFDLGRGIGLISQEGA---GPDIRAEASAIHGRDGR-LRQGEEVLFDVTLDS 56
Query: 61 ANGKYSAENLK 71
A A+N++
Sbjct: 57 AG--LRADNIR 65
>gi|326318173|ref|YP_004235845.1| cold-shock DNA-binding domain-containing protein [Acidovorax
avenae subsp. avenae ATCC 19860]
gi|323375009|gb|ADX47278.1| cold-shock DNA-binding domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 224
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I +N +G+GFI P + GD VF+H A G GQ V + V+
Sbjct: 1 MQFDGMIASWNDARGFGFIEPL---QGGDPVFVHIKAFQG-GASRPQAGQRVRF-AVEAG 55
Query: 61 ANGKYSAENLK 71
G+ A ++
Sbjct: 56 PGGRKRACRVE 66
>gi|21224745|ref|NP_630524.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
gi|4158185|emb|CAA22748.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
Length = 162
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G + ++ +GYGFI PE G+DVFLH + + ++ G +V ++ +
Sbjct: 21 MVAGRVVRFDGTRGYGFIAPED---GGEDVFLHVNDLLIPE-ESVRSGLVVEFEVESGER 76
Query: 62 NGKYS 66
K S
Sbjct: 77 GLKAS 81
>gi|120601923|ref|YP_966323.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio
vulgaris DP4]
gi|120562152|gb|ABM27896.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris
DP4]
Length = 177
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQN 59
M+ +G I +N +G+GFITP+ +T VF+H SA G+ V Y
Sbjct: 1 MLKQGKIAQWNDARGFGFITPDDAT---RRVFVHISAFRHR-YPLPQAGERVFYYLGAPT 56
Query: 60 DANGKYSAEN 69
D + A
Sbjct: 57 DKGPRAEAVQ 66
>gi|288918018|ref|ZP_06412376.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
gi|288350536|gb|EFC84755.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
Length = 142
Score = 52.7 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
+ G + ++ +GYGFI P G+DVFLH + + +L G ++ +D +D
Sbjct: 1 MSTGKVLRFDHVRGYGFIAPSD---GGEDVFLHANDLLVE--KSLVVPGVVMEFDVEDSD 55
Query: 61 ANGKYSAENLKLVPKSS 77
K A + ++V S+
Sbjct: 56 RGRK--ASSARIVRGSA 70
>gi|1402735|gb|AAC80235.1| major cold-shock protein [Bacillus atrophaeus]
Length = 45
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
KG GFI E GDDVF+H SA+ G +L EG+ V++D Q
Sbjct: 1 KKGSGFIEREA----GDDVFVHFSAIQGEGFKSLEEGESVSFDVEQGQR 45
>gi|198466716|ref|XP_002135245.1| GA23356 [Drosophila pseudoobscura pseudoobscura]
gi|198150727|gb|EDY73872.1| GA23356 [Drosophila pseudoobscura pseudoobscura]
Length = 1036
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 925 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 981
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 982 VVKINDRPD 990
Score = 42.7 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 347 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSATVPPQGREFACNI 401
Query: 71 KLVPKSS 77
+P S
Sbjct: 402 TRLPPGS 408
Score = 41.2 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 188 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 243
Query: 76 S 76
Sbjct: 244 E 244
>gi|71909055|ref|YP_286642.1| cold-shock protein, DNA-binding:protein of unknown function
DUF1294 [Dechloromonas aromatica RCB]
gi|71848676|gb|AAZ48172.1| Cold-shock protein, DNA-binding:Protein of unknown function
DUF1294 [Dechloromonas aromatica RCB]
Length = 206
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I + D+GYGFITP G G+ VFLH A + E ++VTY+ Q D
Sbjct: 1 MRLQGRITSWKDDQGYGFITPNG---GGNPVFLHIKAFTRRQPRPVGE-EIVTYELQQ-D 55
Query: 61 ANGKYSAENLKLV 73
G++ AE+++ V
Sbjct: 56 KRGRWRAESVEFV 68
>gi|109898941|ref|YP_662196.1| cold-shock DNA-binding domain-containing protein
[Pseudoalteromonas atlantica T6c]
gi|109701222|gb|ABG41142.1| cold-shock DNA-binding domain protein [Pseudoalteromonas
atlantica T6c]
Length = 237
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + +N DKG+GF+ P G G+ VF+H A + +G ++TY+ V+
Sbjct: 1 MRFQGKVFNWNDDKGFGFVEPNG---GGERVFVHIKAFTPRSRRPV-DGDVITYELVRES 56
Query: 61 ANGKYSAENLK 71
N + AEN++
Sbjct: 57 HN-RCKAENIQ 66
>gi|86130352|ref|ZP_01048952.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
gi|85819027|gb|EAQ40186.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
Length = 148
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +++++ KG+GFI + + F+H S V L EG V+Y+ +
Sbjct: 85 KTGFVEFFDSSKGFGFIKDAD---TPEKYFVHISEVIEG---ELKEGNKVSYEIERGQKG 138
Query: 63 GKYSAENLKLV 73
+A + +
Sbjct: 139 --MNAVRVNKI 147
>gi|326203825|ref|ZP_08193687.1| Cold-shock protein DNA-binding [Clostridium papyrosolvens DSM 2782]
gi|325985923|gb|EGD46757.1| Cold-shock protein DNA-binding [Clostridium papyrosolvens DSM 2782]
Length = 436
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G +K Y ++G+GFI + + + H S V N+ EG VT+ ++
Sbjct: 371 KGKVKKYVSERGFGFI-----KDREKEFYFHISDVYQTHQKNVCEGADVTFSIQESTKG- 424
Query: 64 KYSAENLKLV 73
A+ +K+V
Sbjct: 425 -PVAKQIKVV 433
>gi|255011084|ref|ZP_05283210.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12]
gi|313148891|ref|ZP_07811084.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137658|gb|EFR55018.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 146
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H G I+++N KGYGF+ +G+ F H S+ + + EG VT++ +
Sbjct: 83 HMGRIEYFNAAKGYGFVKDTD---NGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG 135
Query: 63 GKYSAENLKLVPK 75
+A + +V +
Sbjct: 136 --MNAVRISVVTE 146
>gi|322501459|emb|CBZ36538.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 535
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 42/115 (36%)
Query: 3 HRGSIKWYNPDKGYGFIT-------PEGSTESG--------------------------- 28
+ G +K YNP++G+GF+T + S
Sbjct: 335 YEGFVKRYNPNRGFGFLTATAHVTMVNDGSNSDSVTGTPIASLNATTTAVPTTREAETPK 394
Query: 29 --------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
D+F+H+S++ G L G V + D A +++L+P+
Sbjct: 395 EHRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRIGYKDGQQTLQAVSVELLPQ 449
>gi|301164374|emb|CBW23932.1| putative cold-shock-like protein [Bacteroides fragilis 638R]
Length = 69
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I+++N KGYGF+ G+ F H S+ + + EG VT++ +
Sbjct: 8 GRIEYFNAAKGYGFVKDTDC---GEKYFFHISSAPA----TIAEGDRVTFEIERGMRG-- 58
Query: 65 YSAENLKLVPK 75
+A + +V +
Sbjct: 59 MNAVRISIVTE 69
>gi|260770385|ref|ZP_05879318.1| predicted membrane protein [Vibrio furnissii CIP 102972]
gi|260615723|gb|EEX40909.1| predicted membrane protein [Vibrio furnissii CIP 102972]
Length = 197
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I +N KGYGFIT + +F H S V G + V + + +
Sbjct: 1 MAISGKISEWNDAKGYGFITVDNYRGK---IFFHISDVQGHGRR-PKINEAVHFKLAK-E 55
Query: 61 ANGKYSAENLK 71
+NG A +++
Sbjct: 56 SNGSLRAIDIE 66
>gi|146094941|ref|XP_001467429.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134071794|emb|CAM70487.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 535
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 42/115 (36%)
Query: 3 HRGSIKWYNPDKGYGFITP--------EGSTESG-------------------------- 28
+ G +K YNP++G+GF+T +GS
Sbjct: 335 YEGFVKRYNPNRGFGFLTATAHVTMANDGSNSDSVTGTPIASLNATTTAVPTTREAETPK 394
Query: 29 --------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
D+F+H+S++ G L G V + D A +++L+P+
Sbjct: 395 EHRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRIGYKDGQQTLQAVSVELLPQ 449
>gi|297517468|ref|ZP_06935854.1| cold shock-like protein CspC [Escherichia coli OP50]
Length = 42
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
DVF+H SA+ G L EGQ V ++ +A N+ +
Sbjct: 1 DVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG--PAAVNVTAI 42
>gi|60682910|ref|YP_213054.1| cold shock-like protein [Bacteroides fragilis NCTC 9343]
gi|60494344|emb|CAH09140.1| cold shock-like protein [Bacteroides fragilis NCTC 9343]
Length = 69
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I+++N KGYGF+ +G+ F H S+ + + EG VT++ +
Sbjct: 8 GRIEYFNAAKGYGFVKDAD---NGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG-- 58
Query: 65 YSAENLKLVPK 75
+A + +V +
Sbjct: 59 MNAVRISIVTE 69
>gi|218263152|ref|ZP_03477371.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii
DSM 18315]
gi|218222937|gb|EEC95587.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii
DSM 18315]
Length = 154
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + ++N KGYGFI GS G+ F H S + L +++E +VT++ +
Sbjct: 88 KGRVDYFNESKGYGFIKDLGS---GEKYFFHVS---NNTLTDISETDIVTFELERGLRG- 140
Query: 64 KYSAENLKLVPKSSN 78
+A N++ +S N
Sbjct: 141 -MNAINIRNESESPN 154
>gi|315181452|gb|ADT88365.1| predicted membrane protein [Vibrio furnissii NCTC 11218]
Length = 197
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I +N KGYGFIT + +F H S V G + V + + +
Sbjct: 1 MAISGKISEWNDAKGYGFITVDNYRGK---IFFHISDVQGHGRR-PKINEAVHFKLAK-E 55
Query: 61 ANGKYSAENLK 71
+NG A +++
Sbjct: 56 SNGSLRAIDIE 66
>gi|269138656|ref|YP_003295357.1| putative cold shock protein [Edwardsiella tarda EIB202]
gi|267984317|gb|ACY84146.1| putative cold shock protein [Edwardsiella tarda EIB202]
gi|304558666|gb|ADM41330.1| Cold shock protein CspH [Edwardsiella tarda FL6-60]
Length = 70
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +++++ G GFI+P DV +H SA+ L+ G V + + G
Sbjct: 6 TGIVRFFDYRSGKGFISPSD---GRKDVQVHISALHLKDEETLSAGLRVEF-CRMHGRQG 61
Query: 64 KYSAEN 69
+A
Sbjct: 62 PTAANV 67
>gi|154342412|ref|XP_001567154.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134064483|emb|CAM42577.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 525
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 39/112 (34%)
Query: 3 HRGSIKWYNPDKGYGFITP--------EGSTESGD------------------------- 29
+ G +K YNP++G+GF+T G + +G
Sbjct: 332 YEGFVKRYNPNRGFGFLTATTHVTVSANGDSATGTPPTSLSAPATAVPPTAEAEAPEKRR 391
Query: 30 ------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
D+F+H+S++ G L G V + D A +++L+P+
Sbjct: 392 TPVHLGDIFVHQSSMQMEGFRALPVGGRVRFRIGYKDGQQTLQAVDVELLPQ 443
>gi|88855543|ref|ZP_01130207.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1]
gi|88815450|gb|EAR25308.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1]
Length = 246
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
+N ++G+GFIT E SGD +F H SA L E V++ V++ ++GK A
Sbjct: 45 WNDERGFGFITLE----SGDRIFAHISAFPPRDARPTLDE--RVSF-AVEHTSDGKVRAR 97
Query: 69 NLKLVPKSS 77
N++ + +
Sbjct: 98 NIRYLAAAP 106
>gi|126726386|ref|ZP_01742227.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126704249|gb|EBA03341.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
HTCC2150]
Length = 178
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
IKW++ KG+GF S DD+F+H + GL +L G+ + +
Sbjct: 111 RIKWFDKSKGFGF---ANEFGSSDDIFVHVETLRRYGLADLMPGEAICLKIADGERGK-- 165
Query: 66 SAENLK 71
A ++
Sbjct: 166 MAVEVR 171
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KW++ KG+GF+ + E G D+ LH + + + G ++ + + VQ+ A G
Sbjct: 18 GKVKWFDQAKGFGFVVSD---EGGSDILLHANVLRNFGQSSIADATPLVI-AVQDTARGI 73
Query: 65 YSAENLKL 72
+ E + +
Sbjct: 74 QATEVISI 81
>gi|226953687|ref|ZP_03824151.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|226835559|gb|EEH67942.1| cold shock protein [Acinetobacter sp. ATCC 27244]
Length = 205
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ KGYGFI P + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFDD-KGYGFIQPNDAFKDH--VFLHIKDFARPGPRPIV-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G+Y A+ + + S
Sbjct: 57 ER-GRYRAQQVTYLKAS 72
>gi|307171903|gb|EFN63545.1| Cold shock domain-containing protein E1 [Camponotus floridanus]
Length = 885
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V L G V + V N GK SA N
Sbjct: 770 DAVKGPFGFLAYEVDE--GKKLFFHISEVRD--HATLQPGDQVEFVLVTNQRTGKSSACN 825
Query: 70 LKLVPKS 76
+ + +
Sbjct: 826 VTRLSDA 832
Score = 41.6 bits (97), Expect = 0.040, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S S L G V + +Q NGK A N+ +P
Sbjct: 285 FGFIERADVV---KEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 338
Query: 76 SS 77
S
Sbjct: 339 GS 340
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 190
Query: 76 SS 77
+
Sbjct: 191 VA 192
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN----DANGKYSAENL 70
G+GFI ++F H S L G + + + G +A+++
Sbjct: 616 GFGFIETVNH---DREIFFHYSNFEGDA-NTLELGADIECTISSSNNGRGSGGCVAADHV 671
Query: 71 KLVPKSS 77
KLVP+ S
Sbjct: 672 KLVPRGS 678
Score = 33.5 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 21 PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G+ FL + G L G V++ N G A N++L +
Sbjct: 215 RISYENRGECFFLPYTKDDVEGNVTLRAGDKVSFQIATNQR-GNLGACNVRLENPA 269
>gi|307213494|gb|EFN88903.1| Cold shock domain-containing protein E1 [Harpegnathos saltator]
Length = 887
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V L G V + V N GK SA N
Sbjct: 772 DAVKGPFGFLAYEVDE--GKKLFFHISEVRD--HATLQPGDSVEFVLVTNQRTGKSSACN 827
Query: 70 LKLVPKS 76
+ + +
Sbjct: 828 VTRLSDA 834
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S S L G V + +Q NGK A N+ +P
Sbjct: 286 FGFIERADVV---KEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339
Query: 76 SS 77
S
Sbjct: 340 GS 341
Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 136 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 191
Query: 76 SS 77
+
Sbjct: 192 VA 193
Score = 36.9 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAENL 70
G+GFI +F H + V ++ G V + +Q+ +N + SA L
Sbjct: 452 GFGFIRCVDRDA---RLFFHFNEVLDVD-REISVGDEVEFTIIQDPSSSFSNNRQSAIRL 507
Query: 71 KLVPKSS 77
K +P +
Sbjct: 508 KHLPAGT 514
>gi|323488056|ref|ZP_08093309.1| hypothetical protein GPDM_01905 [Planococcus donghaensis MPA1U2]
gi|323398324|gb|EGA91117.1| hypothetical protein GPDM_01905 [Planococcus donghaensis MPA1U2]
Length = 68
Score = 52.0 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K ++ +KG G IT + G+D F + G L GQ V + + A+ +
Sbjct: 3 GKVKSFDENKGIGMITGDN----GEDFFFEEININVDGFRKLMPGQPVKFTTYEGVADKE 58
Query: 65 YSAENLKLV 73
A N+ L+
Sbjct: 59 RVATNVTLI 67
>gi|262280387|ref|ZP_06058171.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
gi|262258165|gb|EEY76899.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
Length = 209
Score = 52.0 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLIILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 ER-GRFRAQQVTYLKAS 72
>gi|313202310|ref|YP_004040968.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. MP688]
gi|312441626|gb|ADQ85732.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
Length = 201
Score = 52.0 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59
M ++G I + +G+GFITP G G+ VFLH SA + EG V+Y+
Sbjct: 1 MRYQGRITTWKDKQGFGFITPNG---GGEPVFLHISAFSHRKRRP--EGDELVSYERTL- 54
Query: 60 DANGKYSAENLKLV 73
DA G+ A + V
Sbjct: 55 DAKGRPQALKVAFV 68
>gi|127511419|ref|YP_001092616.1| cold-shock DNA-binding domain-containing protein [Shewanella
loihica PV-4]
gi|126636714|gb|ABO22357.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
Length = 205
Score = 52.0 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG++ +N DKG+GFI P +T + DVF+H SA+ + G + Y Q +
Sbjct: 1 MERGTLVRWNDDKGFGFIKP--NTPNAQDVFIHISALKQMARKPVV-GDEIIYQ-SQQQS 56
Query: 62 NGKYSAE 68
+GK A
Sbjct: 57 DGKIKAV 63
>gi|113971703|ref|YP_735496.1| cold-shock DNA-binding protein family protein [Shewanella sp.
MR-4]
gi|113886387|gb|ABI40439.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
Length = 185
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG + +N +KG+GFI PE S G DVF+H + + G + Y +
Sbjct: 1 MERGILVRWNDEKGFGFIQPEDS--KGKDVFIHITVLKHMARK-PQVGDSILYR-TEIQN 56
Query: 62 NGKYSAE 68
+GK A
Sbjct: 57 DGKVKAI 63
>gi|24372324|ref|NP_716366.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
gi|24346266|gb|AAN53811.1|AE015518_8 cold shock domain family protein [Shewanella oneidensis MR-1]
Length = 203
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N +KG+GFI PE S DVF+H SA+ G + Y +
Sbjct: 2 LMDRGVLVRWNEEKGFGFIQPEQS--GARDVFIHISALKMMARK-PKVGDSILYH-AEVQ 57
Query: 61 ANGKYSAE 68
+GK A
Sbjct: 58 HDGKIKAV 65
>gi|294635685|ref|ZP_06714157.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
gi|291090966|gb|EFE23527.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
Length = 50
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
DVF+H SA+ S L EGQ V + + SA N+ +
Sbjct: 5 GSKDVFVHFSAIQSNEFRTLDEGQKVEFSVENSPKG--PSAVNVVAI 49
>gi|325849753|ref|ZP_08170900.1| cold shock protein CspB [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325479982|gb|EGC83062.1| cold shock protein CspB [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 66
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDANG 63
G +++++ KG+GFI E D F H S + S + G V +D
Sbjct: 3 GKVRFFDEKKGFGFIESESG-----DYFFHYSEIISDKDYKTIENGARVEFDVKDLGRGD 57
Query: 64 KYSAENLKL 72
+A N+K
Sbjct: 58 --TAFNVKK 64
>gi|256424147|ref|YP_003124800.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
2588]
gi|256039055|gb|ACU62599.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
2588]
Length = 147
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + ++N KG+GFI + S + VF H + +A + E V++ +
Sbjct: 83 TGVVSFFNLSKGFGFINDDSSK---ESVFFHMNQLAH----PVKEKDRVSFLREKGPRG- 134
Query: 64 KYSAENLKLVPKS 76
++A N+ + +
Sbjct: 135 -FNAINVTKITSA 146
>gi|308497192|ref|XP_003110783.1| CRE-CEY-4 protein [Caenorhabditis remanei]
gi|308242663|gb|EFO86615.1| CRE-CEY-4 protein [Caenorhabditis remanei]
Length = 289
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
G +KW++ YGF+ + +D F+H++A+A + L L + + V +D V+
Sbjct: 95 NGIVKWFSVRGRYGFVARASDEK--EDFFVHQTAIAKSSTIKYYLRTLDDEEPVVFDIVE 152
Query: 59 NDANGKYSAENLK 71
A N+
Sbjct: 153 GRKG--PEAANVT 163
>gi|152964323|ref|YP_001360107.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
SRS30216]
gi|151358840|gb|ABS01843.1| putative cold-shock DNA-binding domain protein [Kineococcus
radiotolerans SRS30216]
Length = 156
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G ++ ++ +G+GFIT ++VF H V +L EG V + Q D
Sbjct: 5 AKGKVRSFDDGRGFGFITSPDCP---ENVFFHVKDVVDLEAEDL-EGASVQFTLDQGDRG 60
Query: 63 GKYSAENLKLVPKSS 77
Y A +++ + +
Sbjct: 61 --YKATDVRPLGSAG 73
>gi|195016139|ref|XP_001984348.1| GH16406 [Drosophila grimshawi]
gi|193897830|gb|EDV96696.1| GH16406 [Drosophila grimshawi]
Length = 1062
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + + L G V + V N NGK SA N
Sbjct: 951 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQRNGKSSACN 1007
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 1008 VLKINDRPD 1016
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 365 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 419
Query: 71 KLVPKSS 77
+P S
Sbjct: 420 TRLPPGS 426
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 206 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 261
Query: 76 S 76
Sbjct: 262 E 262
>gi|260752615|ref|YP_003225508.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283856365|ref|YP_162660.2| cold-shock DNA-binding domain-containing protein [Zymomonas
mobilis subsp. mobilis ZM4]
gi|258551978|gb|ACV74924.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283775364|gb|AAV89549.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 189
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW++ KG+GF+ ++ D+ +H S + G L EG V ++
Sbjct: 26 ILITGYVKWFDIIKGFGFLI---GSKGEGDILIHFSLLQEYGKRFLPEGSWVKCLARRSR 82
Query: 61 ANGK 64
K
Sbjct: 83 QGWK 86
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+N KGYGF+ D+F+H A +AG+ G+ + Q+D
Sbjct: 123 TVKWFNRTKGYGFLIR---NADQQDIFVHAEAFHAAGIKKFEAGKSLYACLRQSDKG 176
>gi|313205948|ref|YP_004045125.1| colD-shock DNA-binding protein family [Riemerella anatipestifer DSM
15868]
gi|312445264|gb|ADQ81619.1| cold-shock DNA-binding protein family [Riemerella anatipestifer DSM
15868]
gi|315022261|gb|EFT35289.1| cold-shock DNA-binding domain protein [Riemerella anatipestifer
RA-YM]
gi|325336612|gb|ADZ12886.1| cold shock protein, putative DNA-binding protein [Riemerella
anatipestifer RA-GD]
Length = 145
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G++ +YN +KGYGFI S + +F+H + ++ L + V+Y+ +
Sbjct: 83 NKGTVTFYNEEKGYGFI---NDHRSKESIFVHANQLSE----VLKKDDKVSYEKEKGPKG 135
Query: 63 GKYSAENLKLVP 74
Y A N+ +
Sbjct: 136 --YVATNVIKIK 145
>gi|294651837|ref|ZP_06729130.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
gi|292822268|gb|EFF81178.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
Length = 205
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ KGYGFI P + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFDD-KGYGFIQPNDAFKD--RVFLHIKDFARPGPRPIV-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G+Y A+ + + S
Sbjct: 57 ER-GRYRAQQVTYLKAS 72
>gi|301782271|ref|XP_002926552.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca]
Length = 232
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 18/58 (31%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G KW+N G+GF+T + G +L EG+ V + + ++
Sbjct: 87 GVCKWFNVRVGFGFLT------------------RTEGFRSLKEGEAVEFTFKKSAKG 126
>gi|119776235|ref|YP_928975.1| cold-shock DNA-binding domain-containing protein [Shewanella
amazonensis SB2B]
gi|119768735|gb|ABM01306.1| cold-shock DNA-binding protein family [Shewanella amazonensis
SB2B]
Length = 186
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG + +N ++G+GFI PE + DDVF+H S++ G ++ + Q +
Sbjct: 1 MQRGKLIRWNDERGFGFIKPE--QDGADDVFIHISSLKQMS-RAPRIGDIIVFQL-QTSS 56
Query: 62 NGKYSA 67
+GK A
Sbjct: 57 DGKQQA 62
>gi|332306019|ref|YP_004433870.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173348|gb|AEE22602.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 236
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N DKG+GF+ P G G+ F+H A + +G ++ Y+ V+ D
Sbjct: 1 MRFQGKIFNWNDDKGFGFVEPNG---GGERAFVHIKAFNPRSRRPI-DGDIIIYELVRED 56
Query: 61 ANGKYSAENLK 71
N + A N++
Sbjct: 57 -NHRAKAINIQ 66
>gi|213648751|ref|ZP_03378804.1| putative cold-shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 39
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
G +KW+NP+KG+GFITP+ DVF+H SA+ S
Sbjct: 6 TGLVKWFNPEKGFGFITPKD---GSKDVFVHFSAIQS 39
>gi|90408574|ref|ZP_01216730.1| Cold-shock DNA-binding domain protein [Psychromonas sp. CNPT3]
gi|90310328|gb|EAS38457.1| Cold-shock DNA-binding domain protein [Psychromonas sp. CNPT3]
Length = 208
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N DKG+GF+ S G F+H + + G ++TY+ VQ +
Sbjct: 1 MRSQGKILNWNDDKGFGFVV---SNAGGVSAFVHIKSFQVNARRPVN-GDVITYELVQGN 56
Query: 61 ANGKYSAENLKLVPKSSN 78
+ +Y A+ +K + + N
Sbjct: 57 -DQRYQAKQVKFLNDAVN 73
>gi|313226675|emb|CBY21820.1| unnamed protein product [Oikopleura dioica]
Length = 277
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDANG 63
G IK++N ++ +GFI +G + ++++++ + G + +L G+ V ++ + G
Sbjct: 157 GKIKFFNHERDFGFIIEDG---NQAEIYMNKINIVQIGKILSLRTGERVEFNVKRG-HQG 212
Query: 64 KYSAENLK 71
+ A +
Sbjct: 213 RLEAVQIT 220
>gi|296207137|ref|XP_002750515.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
Length = 209
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 5 GSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
G KW N G+GF I G + +VF+H+ + G +L EG+ + + + ++
Sbjct: 42 GICKWLNVHMGFGFLSMIARAGDALNPPVEVFVHQGKLHMKGFRSLKEGEAMEFTFKKSA 101
Query: 61 AN 62
Sbjct: 102 KG 103
>gi|162985|gb|AAA21677.1| transcription factor EF1(A) [Bos taurus]
Length = 110
Score = 51.6 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQ 50
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+
Sbjct: 61 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGE 107
>gi|261856418|ref|YP_003263701.1| cold-shock DNA-binding domain protein [Halothiobacillus
neapolitanus c2]
gi|261836887|gb|ACX96654.1| cold-shock DNA-binding domain protein [Halothiobacillus
neapolitanus c2]
Length = 204
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I + KG+GFI P G DVF+H + + + +G++VTY V++D
Sbjct: 1 MRAKGKIVRWQDAKGFGFIHPLD---GGADVFVHIRSFTNRQRRPV-DGEIVTY-TVEHD 55
Query: 61 ANGKYSAENLKLVPKSS 77
A + A ++ ++
Sbjct: 56 AQNRKRASDIVFAGEAP 72
>gi|195125563|ref|XP_002007247.1| GI12487 [Drosophila mojavensis]
gi|193918856|gb|EDW17723.1| GI12487 [Drosophila mojavensis]
Length = 1037
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 926 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 982
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 983 VLKINDRPD 991
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 338 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSATVPPQGREFACNI 392
Query: 71 KLVPKSS 77
+P S
Sbjct: 393 TRLPPGS 399
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + +L G V ++ + GK A + +
Sbjct: 179 YGFIQ---CCERQARLFFHFSQFTGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 234
Query: 76 S 76
Sbjct: 235 E 235
>gi|194748709|ref|XP_001956787.1| GF10107 [Drosophila ananassae]
gi|190624069|gb|EDV39593.1| GF10107 [Drosophila ananassae]
Length = 1043
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + + L G V + V N NGK SA N
Sbjct: 932 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQRNGKSSACN 988
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 989 VLKINDRPD 997
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 355 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREYACNI 409
Query: 71 KLVPKSS 77
+P S
Sbjct: 410 TRLPPGS 416
Score = 41.2 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 196 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 251
Query: 76 S 76
Sbjct: 252 E 252
>gi|221114043|ref|XP_002157672.1| PREDICTED: similar to Cold shock domain-containing protein E1,
partial [Hydra magnipapillata]
Length = 425
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 14 KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
KG +GFI+ + G +F H S + +L G V++ V N NGK SA ++
Sbjct: 307 KGQFGFISYDNDE--GKRIFFHMSELIDIHSSDLRTGDEVSFAIVNNHKNGKKSAIRVQK 364
Query: 73 V 73
+
Sbjct: 365 I 365
>gi|220934585|ref|YP_002513484.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995895|gb|ACL72497.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
HL-EbGR7]
Length = 204
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I + D+G+GFI P G +VF+H + + + ++VTYD V +D
Sbjct: 1 MRAKGRIYDWKDDRGFGFIRP---NVGGKEVFVHIRSFNNRTRRPVR-NEIVTYDLVIDD 56
Query: 61 ANGKYSAENL 70
G+ AE +
Sbjct: 57 Q-GRPRAEKV 65
>gi|241761855|ref|ZP_04759941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373769|gb|EER63329.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 189
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G +KW++ KG+GF+ ++ D+ +H S + G L EG V ++
Sbjct: 26 ILITGYVKWFDIIKGFGFLI---GSKGEGDILIHFSLLQEYGKRFLPEGSWVKCLARKSR 82
Query: 61 ANGK 64
K
Sbjct: 83 QGWK 86
Score = 47.7 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++KW+N KGYGF+ D+F+H A +AG+ G+ + Q+D
Sbjct: 123 TVKWFNRTKGYGFLIR---NADQQDIFVHAEAFHAAGIKKFEAGKSLYACLRQSDKG 176
>gi|195442396|ref|XP_002068944.1| GK17751 [Drosophila willistoni]
gi|194165029|gb|EDW79930.1| GK17751 [Drosophila willistoni]
Length = 1053
Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 942 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 998
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 999 VLKINDRPD 1007
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN------DANGKYSAEN 69
+GFI ++F H S + G L G V + G+ A N
Sbjct: 370 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSQSASVPPQGREFACN 424
Query: 70 LKLVPKSS 77
+ +P S
Sbjct: 425 ITRLPPGS 432
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 211 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 266
Query: 76 S 76
Sbjct: 267 E 267
>gi|215432621|ref|ZP_03430540.1| cold shock protein A cspA [Mycobacterium tuberculosis EAS054]
Length = 61
Score = 51.2 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
FI PE DVF+H + + G L E Q V ++ + A ++
Sbjct: 11 FIAPED---GSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKG--PQATGVR 59
>gi|218458034|ref|ZP_03498125.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5]
Length = 57
Score = 51.2 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGS 24
+ G++KW+N KG+GFI P+
Sbjct: 35 MSTGTVKWFNATKGFGFIQPDDG 57
>gi|254491496|ref|ZP_05104675.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010]
gi|224462974|gb|EEF79244.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010]
Length = 207
Score = 51.2 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G IK +N KGYGFI PE G D+FLH +V S G G+ + Y + D
Sbjct: 6 KGKIKTWNEGKGYGFIIPES---GGKDIFLHIKSVQSRG-RVPKLGETIAYTLSK-DKQN 60
Query: 64 KYSAEN 69
+ A +
Sbjct: 61 RLCAID 66
>gi|222035900|emb|CAP78645.1| cold shock protein [Escherichia coli LF82]
gi|312948773|gb|ADR29600.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli O83:H1 str. NRG 857C]
Length = 148
Score = 51.2 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IKW++ +KGYGFIT D + H S + + L +GQ ++ +
Sbjct: 3 GVIKWFSEEKGYGFITAAN----NIDYYFHVSDIKGSLLP--EKGQNAHFNAESTSKGHR 56
Query: 65 YSAENLKL 72
A+N+ L
Sbjct: 57 --AKNITL 62
>gi|302668611|ref|YP_003833059.1| cold shock domain protein CspD3 [Butyrivibrio proteoclasticus
B316]
gi|302397575|gb|ADL36477.1| cold shock domain protein CspD3 [Butyrivibrio proteoclasticus
B316]
Length = 286
Score = 51.2 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G IK Y D+G+GFI + D F H S V + G ++ G V +D N+ K
Sbjct: 3 GIIKKYYDDRGFGFIKADD-----RDFFFHVSDVVN-GTNSIVTGIRVRFDVGSNNKGEK 56
Query: 65 YSAENLKLVPKS 76
AEN+K++ S
Sbjct: 57 --AENVKIISDS 66
>gi|30248726|ref|NP_840796.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
europaea ATCC 19718]
gi|30180321|emb|CAD84628.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
Length = 204
Score = 51.2 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
M ++G I + DKG+GF+TP G G+ +F+H ++ +S EG +LVTY+ +
Sbjct: 1 MRYQGRITTWKDDKGFGFVTPNG---GGEQIFVHINSFSSRQRRP--EGNELVTYELTVD 55
Query: 60 DANGKYSAENLKLVPKSS 77
G+ A+ + V +
Sbjct: 56 SK-GRSQAKAVAFVGEQP 72
>gi|195491191|ref|XP_002093456.1| GE21305 [Drosophila yakuba]
gi|194179557|gb|EDW93168.1| GE21305 [Drosophila yakuba]
Length = 1044
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + + L G V + V N NGK SA N
Sbjct: 933 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQRNGKSSACN 989
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 990 VLKINDRPD 998
Score = 41.2 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 203 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 258
Query: 76 S 76
Sbjct: 259 E 259
Score = 40.0 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 362 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 416
Query: 71 KLVPKSS 77
+ S
Sbjct: 417 TRLAPGS 423
>gi|24660935|ref|NP_648226.2| upstream of N-ras, isoform A [Drosophila melanogaster]
gi|23093910|gb|AAF50415.2| upstream of N-ras, isoform A [Drosophila melanogaster]
Length = 1039
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 928 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 984
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 985 VLKINDRPD 993
Score = 41.2 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253
Query: 76 S 76
Sbjct: 254 E 254
Score = 40.4 bits (94), Expect = 0.090, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 357 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 411
Query: 71 KLVPKSS 77
+ S
Sbjct: 412 TRLAPGS 418
>gi|47026413|gb|AAT08469.1| RE66582p [Drosophila melanogaster]
Length = 1057
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 946 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 1002
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 1003 VLKINDRPD 1011
Score = 41.2 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253
Query: 76 S 76
Sbjct: 254 E 254
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
+GFI ++F H S + G L G V +
Sbjct: 357 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTI 392
>gi|221330989|ref|NP_001137912.1| upstream of N-ras, isoform B [Drosophila melanogaster]
gi|220902519|gb|ACL83267.1| upstream of N-ras, isoform B [Drosophila melanogaster]
Length = 1057
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 946 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 1002
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 1003 VLKINDRPD 1011
Score = 41.2 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253
Query: 76 S 76
Sbjct: 254 E 254
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
+GFI ++F H S + G L G V +
Sbjct: 357 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTI 392
>gi|323446578|gb|EGB02690.1| hypothetical protein AURANDRAFT_72835 [Aureococcus anophagefferens]
Length = 411
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
+W ++G+GFI P+ GDD+F H S + L+EG V + V ++ GK
Sbjct: 249 CRW--NERGFGFIKPDD---GGDDLFCHVSQITDGN--ALSEGATVHFVKVFDERRGKDR 301
Query: 67 AENLK 71
AE +
Sbjct: 302 AEQVT 306
>gi|289665743|ref|ZP_06487324.1| integral membrane protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289671247|ref|ZP_06492322.1| integral membrane protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 204
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D
Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPNG---GGDRAFVHISAFAQQSRR-PRDGEIITY-AIERD 55
Query: 61 ANGKYSAENLK 71
A + +A ++
Sbjct: 56 AQKRLNATQVR 66
>gi|195326013|ref|XP_002029725.1| GM24938 [Drosophila sechellia]
gi|194118668|gb|EDW40711.1| GM24938 [Drosophila sechellia]
Length = 1036
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 925 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 981
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 982 VLKINDRPD 990
Score = 41.2 bits (96), Expect = 0.051, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 195 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 250
Query: 76 S 76
Sbjct: 251 E 251
Score = 40.0 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 354 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 408
Query: 71 KLVPKSS 77
+ S
Sbjct: 409 TRLAPGS 415
>gi|194865892|ref|XP_001971655.1| GG15082 [Drosophila erecta]
gi|190653438|gb|EDV50681.1| GG15082 [Drosophila erecta]
Length = 1035
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 924 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 980
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 981 VLKINDRPD 989
Score = 41.2 bits (96), Expect = 0.051, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 194 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 249
Query: 76 S 76
Sbjct: 250 E 250
Score = 40.0 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 353 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 407
Query: 71 KLVPKSS 77
+ S
Sbjct: 408 TRLAPGS 414
>gi|47222740|emb|CAG01707.1| unnamed protein product [Tetraodon nigroviridis]
Length = 834
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFIT E +F H V GL L G V + V N GK+SA N++ + +
Sbjct: 646 FGFITYEVGES--KKLFFHVKEVQ-DGL-ELQTGDEVEFTVVLNQRTGKFSACNVRRISE 701
Query: 76 SS 77
+
Sbjct: 702 AP 703
Score = 38.1 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G IT + G + + +L G V + + G+ SA +++L+ ++
Sbjct: 419 GMITYDDC---GMKISVPYHTKDLEAGIHLQAGDKVEFSISEVKRTGQQSAVSVRLLNRT 475
Query: 77 SN 78
+
Sbjct: 476 VS 477
Score = 37.7 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVAPDRRTGKPIAVKLLKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|15292067|gb|AAK93302.1| LD37025p [Drosophila melanogaster]
Length = 806
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N NGK SA N
Sbjct: 695 DSIKGQFGFLNFEVE--DGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 751
Query: 70 LKLVPKSSN 78
+ + +
Sbjct: 752 VLKINDRPD 760
Score = 40.0 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 124 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 178
Query: 71 KLVPKSS 77
+ S
Sbjct: 179 TRLAPGS 185
>gi|281341041|gb|EFB16625.1| hypothetical protein PANDA_016210 [Ailuropoda melanoleuca]
Length = 183
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 18/58 (31%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G KW+N G+GF+T + G +L EG+ V + + ++
Sbjct: 38 GVCKWFNVRVGFGFLT------------------RTEGFRSLKEGEAVEFTFKKSAKG 77
>gi|330983247|gb|EGH81350.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 36
Score = 50.8 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
G++KW+N +KG+GFITP +SGDD+F+H A+
Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAI 36
>gi|148673096|gb|EDL05043.1| lin-28 homolog B (C. elegans), isoform CRA_a [Mus musculus]
Length = 233
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 15 GYGFITPEGSTESG----DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
G+GFI+ + DVF+H+S + G +L EG+ V + + ++ E++
Sbjct: 2 GFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKGL----ESI 57
Query: 71 KLVPKSSN 78
++ +
Sbjct: 58 RVTGPGGS 65
>gi|85717414|ref|ZP_01048364.1| cold shock protein [Nitrobacter sp. Nb-311A]
gi|85695769|gb|EAQ33677.1| cold shock protein [Nitrobacter sp. Nb-311A]
Length = 62
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
FI PE G DVF+H SAV AGL +L+EG V+++ VQN GK SAE
Sbjct: 10 FIEPES---GGKDVFVHISAVERAGLSSLSEGDKVSHEVVQN--RGKESAE 55
>gi|262373360|ref|ZP_06066639.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262313385|gb|EEY94470.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 235
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G IK Y+ ++G+GFI +G DVF H A G+ + + V+++
Sbjct: 1 MFVEGKIKKYDTERGFGFIKVDGHQT---DVFFHIKDFPKAS-GEPKIGEKLKFLIVEDN 56
Query: 61 ANGKYSAENLKLVPK 75
NGK+ A N+ + +
Sbjct: 57 -NGKFKAANIVRLDQ 70
>gi|256828357|ref|YP_003157085.1| cold-shock DNA-binding domain-containing protein
[Desulfomicrobium baculatum DSM 4028]
gi|256577533|gb|ACU88669.1| cold-shock DNA-binding domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 168
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I + D+G+GFITP G G VF+H SA+ G++VTY+ +
Sbjct: 1 MRFHGEISEWRDDRGFGFITPTG---GGTRVFVHISALQKG--RRPRAGEMVTYEVGNSG 55
Query: 61 ANGKYSAENLKLV 73
G A N+ V
Sbjct: 56 DKG-PRALNVNFV 67
>gi|325287710|ref|YP_004263500.1| Cold-shock protein DNA-binding protein [Cellulophaga lytica DSM
7489]
gi|324323164|gb|ADY30629.1| Cold-shock protein DNA-binding protein [Cellulophaga lytica DSM
7489]
Length = 149
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + +++ KG+GFI E+ + F+H S + + ++E V+Y+ +
Sbjct: 89 NGKVSFFDTSKGFGFII---DAENNEKYFVHVSGL----IDEISENDKVSYELERGMKG- 140
Query: 64 KYSAENLKLV 73
+A +K +
Sbjct: 141 -MNAVRVKRI 149
>gi|299768495|ref|YP_003730521.1| hypothetical protein AOLE_01225 [Acinetobacter sp. DR1]
gi|298698583|gb|ADI89148.1| hypothetical protein AOLE_01225 [Acinetobacter sp. DR1]
Length = 209
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P+ + + + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEK--ERVFLHIKDFARPGPRPII-GCALEYLIILD 56
Query: 60 DANGKYSAENLKLVPKS 76
+ G++ A+ + + S
Sbjct: 57 EQ-GRFRAQQVTYLKAS 72
>gi|154494222|ref|ZP_02033542.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC
43184]
gi|154086084|gb|EDN85129.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC
43184]
Length = 152
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + ++N KGYGFI GS G+ F H S + L +++E +VT++ +
Sbjct: 88 KGRVDYFNESKGYGFIKDLGS---GEKYFFHVS---NNTLTDISETDIVTFELERGLRG- 140
Query: 64 KYSAENLKLVPK 75
+A N+++ +
Sbjct: 141 -MNAINIRIESE 151
>gi|170769977|ref|ZP_02904430.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
gi|170121161|gb|EDS90092.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
Length = 70
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA++ L G V + V
Sbjct: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISALSLRDAETLIPGVRVEFCRVNGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|221115367|ref|XP_002163744.1| PREDICTED: similar to RNA-binding protein pippin [Hydra
magnipapillata]
Length = 147
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G++ + +KG+GF+ P+ + VFLH S + + + G V + +
Sbjct: 65 NGTVVSFCREKGHGFVKPDNEERN---VFLHISDIEDEYV--VQSGDRVEFRTIPMPPKC 119
Query: 63 GKYSAENLKLVP 74
+ A ++L+
Sbjct: 120 VERMAVEVRLIE 131
>gi|78048088|ref|YP_364263.1| hypothetical protein XCV2532 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036518|emb|CAJ24209.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 204
Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D
Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFARQTRR-PRDGEIITY-AIERD 55
Query: 61 ANGKYSAENLK 71
A+ + +A ++
Sbjct: 56 AHKRLNATQVR 66
>gi|313159124|gb|EFR58499.1| cold-shock DNA-binding domain protein [Alistipes sp. HGB5]
Length = 145
Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++ +N DKGYGFI ST + F H S + + EG LVT++ +
Sbjct: 84 RGRVEHFNTDKGYGFIKDLDST---EKYFFHISNAPAD----IAEGALVTFETERGQRG- 135
Query: 64 KYSAENL 70
+A N+
Sbjct: 136 -LNAVNI 141
>gi|213646239|ref|ZP_03376292.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
Length = 45
Score = 50.4 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
DVF+H SA+ S L E Q V + Q SA N+ +
Sbjct: 1 GSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKG--PSAVNVVAL 45
>gi|300115369|ref|YP_003761944.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus
watsonii C-113]
gi|299541306|gb|ADJ29623.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii
C-113]
Length = 229
Score = 50.4 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I +N +KGYGFI+P GD VF H A + G G VT+ D
Sbjct: 1 MRMKGEIASWNDEKGYGFISP---MRGGDRVFAHIKAFVNRGRR-PAVGDAVTFSMS-TD 55
Query: 61 ANGKYSA 67
A G++ A
Sbjct: 56 ARGRHCA 62
>gi|148675659|gb|EDL07606.1| cold shock domain containing E1, RNA binding, isoform CRA_b [Mus
musculus]
Length = 854
Score = 50.4 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 252 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 305
Query: 76 SS 77
+
Sbjct: 306 GT 307
Score = 42.3 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 741 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 796
Query: 76 SS 77
Sbjct: 797 GP 798
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 92 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147
Query: 76 S 76
Sbjct: 148 E 148
Score = 33.5 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 513 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRN 569
Query: 77 SN 78
SN
Sbjct: 570 SN 571
>gi|57098733|ref|XP_533016.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein)
(N-ras upstream gene protein) isoform 5 [Canis
familiaris]
Length = 844
Score = 50.4 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 243 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 296
Query: 76 SS 77
+
Sbjct: 297 GT 298
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 786
Query: 76 SS 77
Sbjct: 787 GP 788
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.5 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 503 GVIAYDDC---GVKLTIAFQAKDVEGSASPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 559
Query: 77 SN 78
SN
Sbjct: 560 SN 561
>gi|332526887|ref|ZP_08402980.1| cold-shock DNA-binding domain-containing protein [Rubrivivax
benzoatilyticus JA2]
gi|332111329|gb|EGJ11313.1| cold-shock DNA-binding domain-containing protein [Rubrivivax
benzoatilyticus JA2]
Length = 210
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + +N D+G+G I ST+ G +F+H S Q V+++ Q +
Sbjct: 10 GKLTRWNDDRGFGTIE---STQGGKPIFMHISEWPRDAPR-PRVDQRVSFEIEQGPKGKR 65
Query: 65 YSAENLKLV 73
A ++ +
Sbjct: 66 --ATRIQPL 72
>gi|91805298|gb|ABE65380.1| CspC [Escherichia coli]
Length = 41
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
VF+H SA+ G L EGQ V ++ +A N+ +
Sbjct: 1 VFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG--PAAVNVTAI 41
>gi|40788973|dbj|BAA74908.2| KIAA0885 protein [Homo sapiens]
Length = 826
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 225 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 278
Query: 76 SS 77
+
Sbjct: 279 GT 280
Score = 42.0 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 713 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 768
Query: 76 SS 77
Sbjct: 769 GP 770
Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 65 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 120
Query: 76 S 76
Sbjct: 121 E 121
Score = 34.3 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 485 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 541
Query: 77 SN 78
SN
Sbjct: 542 SN 543
>gi|312129178|ref|YP_003996518.1| cold-shock DNA-binding protein family [Leadbetterella byssophila
DSM 17132]
gi|311905724|gb|ADQ16165.1| cold-shock DNA-binding protein family [Leadbetterella byssophila
DSM 17132]
Length = 146
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+G + ++ DKGYGFIT + + +F+H + + L EG VT++ ++D
Sbjct: 83 RKKGVVAYF-SDKGYGFIT---EERTKERIFVHTNDLKVE----LREGDKVTFETERSDR 134
Query: 62 NGKYSAENLKLV 73
A N++ V
Sbjct: 135 G--LKAINVEKV 144
>gi|156537407|ref|XP_001606818.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
Length = 893
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V L G V + V N +GK SA N
Sbjct: 778 DAVKGPFGFLAYEVDE--GKKLFFHMSEVCDD--AKLKPGDQVEFVLVTNQRSGKSSACN 833
Query: 70 LKLVPKS 76
+ + ++
Sbjct: 834 VVRLSEA 840
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV----QNDANGKYSAENL 70
G+GFI ++F H S L G V + + A G +AE++
Sbjct: 624 GFGFIETINH---DKEIFFHYSNFDGDA-STLELGADVECNISTGNNRGGAGGCTAAESV 679
Query: 71 KLVPKSS 77
+L+ K S
Sbjct: 680 RLLEKGS 686
Score = 41.2 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S S L G V + +Q NGK A N+ +P
Sbjct: 286 FGFIERADVV---KEIFFHFSEAKSMK-DELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339
Query: 76 SS 77
S
Sbjct: 340 GS 341
Score = 40.0 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKISP 190
Query: 76 S 76
Sbjct: 191 E 191
>gi|71896273|ref|NP_001026089.1| cold shock domain-containing protein E1 [Gallus gallus]
gi|60098943|emb|CAH65302.1| hypothetical protein RCJMB04_16d21 [Gallus gallus]
Length = 794
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+GFI E +F H V G+ L G V + + N GK SA N+
Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNV 733
Score = 39.3 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 37.3 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+GFI ++F H S + +L G V Y + K SAE +
Sbjct: 528 FGFIETANH---DKEIFFHYSEYCGD-IDSLELGDTVEYSLSKG-KGNKVSAEKVNK 579
>gi|217971871|ref|YP_002356622.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS223]
gi|217497006|gb|ACK45199.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
Length = 219
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N +KG+GFI PE + DVF+H S + + G + + +
Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEVQ 57
Query: 61 ANGKYSAE 68
+GK A
Sbjct: 58 NDGKRKAV 65
>gi|254670958|emb|CBA07630.1| hypothetical cold-shock protein [Neisseria meningitidis alpha153]
Length = 204
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW + +KGYGFI +G ++F H S + + V ++ V + G++
Sbjct: 18 IVKW-DDEKGYGFIRIDG---GNKEIFCHISDFSPRNPR-PEINEAVGFEVVSDGK-GRF 71
Query: 66 SAENLKLV 73
SA+ ++ +
Sbjct: 72 SAKQIRYL 79
>gi|73981071|ref|XP_856473.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 6 [Canis
familiaris]
gi|73981079|ref|XP_856637.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 10 [Canis
familiaris]
gi|73981085|ref|XP_856758.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 13 [Canis
familiaris]
Length = 767
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.5 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GVIAYDDC---GVKLTIAFQAKDVEGSASPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|73981073|ref|XP_856513.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 7 [Canis
familiaris]
gi|73981081|ref|XP_856679.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 11 [Canis
familiaris]
Length = 813
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 212 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 265
Query: 76 SS 77
+
Sbjct: 266 GT 267
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 755
Query: 76 SS 77
Sbjct: 756 GP 757
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 138
Query: 76 S 76
Sbjct: 139 E 139
>gi|50086376|ref|YP_047886.1| putative cold shock protein [Acinetobacter sp. ADP1]
gi|49532352|emb|CAG70064.1| putative cold shock protein [Acinetobacter sp. ADP1]
Length = 208
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ KGYGFI P S + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFDD-KGYGFIQPNDSQKG--RVFLHIRDFARKGPRPIV-GCALEYLVILD 56
Query: 60 DANGKYSAENLKLVPK 75
+ G++ A + +
Sbjct: 57 EQ-GRHRAIQVVYLKA 71
>gi|157963490|ref|YP_001503524.1| cold-shock DNA-binding domain-containing protein [Shewanella
pealeana ATCC 700345]
gi|157848490|gb|ABV88989.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
700345]
Length = 188
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N ++G+GFI PE T + DVF+H SA+ + G + + +
Sbjct: 2 LMERGVLVRWNEERGFGFIKPE--TTNAKDVFIHISALKHMARKPVV-GDQILFH-SERQ 57
Query: 61 ANGKYSA--ENLKLVPKSSN 78
A+GK A N++ V +N
Sbjct: 58 ADGKLKASKANIEGVAVVAN 77
>gi|319786851|ref|YP_004146326.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465363|gb|ADV27095.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 198
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I +N ++G+GFI G VF+H + G VTY+ Q D
Sbjct: 1 MRLAGKIIEWNDERGFGFIAQNG---GSQRVFVHVRDFEGRARRPVV-GDPVTYEPGQ-D 55
Query: 61 ANGKYSAENLK 71
A G+ A ++
Sbjct: 56 ARGRPMATRVR 66
>gi|145480845|ref|XP_001426445.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393520|emb|CAK59047.1| unnamed protein product [Paramecium tetraurelia]
Length = 415
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD-- 55
+ G +K+++ K YGFI + D+F+H + AG L +G + +
Sbjct: 327 YTGRLKFFDEQKNYGFIVMDEDKS---DIFVHLDDLQKAGVTKEVLKTAKQGSQIRFQFN 383
Query: 56 --YVQNDANGKYSAENLKLV 73
A LKL+
Sbjct: 384 CMVYVGKYKKSRKAVELKLL 403
>gi|296489462|gb|DAA31575.1| cold shock domain containing E1, RNA-binding [Bos taurus]
Length = 767
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L +L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LESLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|148675658|gb|EDL07605.1| cold shock domain containing E1, RNA binding, isoform CRA_a [Mus
musculus]
Length = 823
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 221 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 274
Query: 76 SS 77
+
Sbjct: 275 GT 276
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 710 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 765
Query: 76 SS 77
Sbjct: 766 GP 767
Score = 38.5 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 92 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147
Query: 76 S 76
Sbjct: 148 E 148
Score = 33.5 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 482 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRN 538
Query: 77 SN 78
SN
Sbjct: 539 SN 540
>gi|95929682|ref|ZP_01312424.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
gi|95134379|gb|EAT16036.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
DSM 684]
Length = 214
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M RG+I +N DKGYGFI P +F+H ++ QLV Y D
Sbjct: 8 MRKRGTITSWNKDKGYGFILP---NSGSKQIFVHIKDFSNR-HRQPEVEQLVNYS-ESVD 62
Query: 61 ANGKYSAENLKLVPKSSN 78
G+ A N V +
Sbjct: 63 RQGRPCAINATRVGDGTE 80
>gi|311254534|ref|XP_003125880.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
[Sus scrofa]
Length = 798
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.5 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 457 GVIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|148227486|ref|NP_001091494.1| cold shock domain-containing protein E1 [Bos taurus]
gi|146186480|gb|AAI40515.1| CSDE1 protein [Bos taurus]
Length = 767
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L +L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LESLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|17980576|gb|AAL50653.1| major cold shock protein [Lactobacillus crispatus]
Length = 50
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
G GFITP+ DVF+H SA+ G +L EGQ V++ + N+
Sbjct: 1 GXGFITPDD---GSKDVFVHFSAI--NGYKSLDEGQKVSFTIESGAKG--PAXANVT 50
>gi|321475491|gb|EFX86454.1| hypothetical protein DAPPUDRAFT_7593 [Daphnia pulex]
Length = 114
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G IK + KG+GFI + G+D+F+H S + G + G V++ +Q
Sbjct: 35 EHGVIKSFCRVKGHGFIKKDD----GEDIFVHVSDI--DGEYVPRVGDQVSFRKLQIPPK 88
Query: 63 -GKYSAENLKL 72
K+ A ++++
Sbjct: 89 MEKFQAVHVQI 99
>gi|160873811|ref|YP_001553127.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS195]
gi|160859333|gb|ABX47867.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
gi|315266036|gb|ADT92889.1| Excalibur domain protein [Shewanella baltica OS678]
Length = 219
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N +KG+GFI PE + DVF+H S + + G + + +
Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEVQ 57
Query: 61 ANGKYSAE 68
+GK A
Sbjct: 58 NDGKRKAV 65
>gi|284038911|ref|YP_003388841.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
gi|283818204|gb|ADB40042.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
Length = 148
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + ++N KGYGFI ++ + +F+H + + + E VT+
Sbjct: 86 QGVVTFFNDSKGYGFIR---DLQTQESIFVHINGLKE----PIGEQDKVTFSTEMTPKG- 137
Query: 64 KYSAENLKLV 73
+A ++K +
Sbjct: 138 -PNAVDVKKL 146
>gi|194210946|ref|XP_001917794.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 5
[Equus caballus]
gi|194210954|ref|XP_001917800.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 6
[Equus caballus]
Length = 798
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.5 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 457 GVIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|149030463|gb|EDL85500.1| upstream of NRAS, isoform CRA_b [Rattus norvegicus]
Length = 799
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 686 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 741
Query: 76 SS 77
Sbjct: 742 GP 743
Score = 38.1 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|332237743|ref|XP_003268067.1| PREDICTED: cold shock domain-containing protein E1 isoform 2
[Nomascus leucogenys]
gi|332237749|ref|XP_003268070.1| PREDICTED: cold shock domain-containing protein E1 isoform 5
[Nomascus leucogenys]
Length = 798
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 457 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|120602350|ref|YP_966750.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio
vulgaris DP4]
gi|120562579|gb|ABM28323.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris
DP4]
Length = 201
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59
M +G I +N ++G+GFI+P+ VF+H SA S L E G+ V Y
Sbjct: 24 MFDQGKIAQWNDERGFGFISPDD---GSPRVFVHISAFRS--RHPLPEVGERVLYYLGPL 78
Query: 60 DANGKYSAENLKLVPK 75
G A ++ + +
Sbjct: 79 SPKG-PRASVVRYIDR 93
>gi|28972443|dbj|BAC65675.1| mKIAA0885 protein [Mus musculus]
Length = 822
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 221 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 274
Query: 76 SS 77
+
Sbjct: 275 GT 276
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 709 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 764
Query: 76 SS 77
Sbjct: 765 GP 766
Score = 38.1 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 92 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147
Query: 76 S 76
Sbjct: 148 E 148
>gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
Length = 203
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDD 30
M G++KW+NP+KGYGF+ E + +
Sbjct: 1 MKVTGTVKWFNPEKGYGFVKQENGNKENKN 30
>gi|296208928|ref|XP_002751324.1| PREDICTED: cold shock domain-containing protein E1 [Callithrix
jacchus]
Length = 776
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 663 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 718
Query: 76 SS 77
Sbjct: 719 GP 720
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 34.3 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 457 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSVSDKQRPGQQVATCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|293357482|ref|XP_002729159.1| PREDICTED: cold shock domain containing E1, RNA binding [Rattus
norvegicus]
Length = 727
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 614 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 669
Query: 76 SS 77
Sbjct: 670 GP 671
Score = 38.1 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|194210948|ref|XP_001917791.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 4
[Equus caballus]
Length = 838
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 237 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 290
Query: 76 SS 77
+
Sbjct: 291 GT 292
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 725 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 780
Query: 76 SS 77
Sbjct: 781 GP 782
Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 77 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 132
Query: 76 S 76
Sbjct: 133 E 133
Score = 33.5 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 497 GVIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRN 553
Query: 77 SN 78
SN
Sbjct: 554 SN 555
>gi|109014489|ref|XP_001111655.1| PREDICTED: cold shock domain-containing protein E1 isoform 1
[Macaca mulatta]
gi|119577020|gb|EAW56616.1| cold shock domain containing E1, RNA-binding, isoform CRA_d [Homo
sapiens]
Length = 844
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 243 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 296
Query: 76 SS 77
+
Sbjct: 297 GT 298
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 786
Query: 76 SS 77
Sbjct: 787 GP 788
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 503 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 559
Query: 77 SN 78
SN
Sbjct: 560 SN 561
>gi|51476482|emb|CAH18231.1| hypothetical protein [Homo sapiens]
Length = 844
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 243 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 296
Query: 76 SS 77
+
Sbjct: 297 GT 298
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 786
Query: 76 SS 77
Sbjct: 787 GP 788
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 503 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 559
Query: 77 SN 78
SN
Sbjct: 560 SN 561
>gi|56117852|ref|NP_001007554.1| cold shock domain-containing protein E1 isoform 1 [Homo sapiens]
gi|297279637|ref|XP_002801760.1| PREDICTED: cold shock domain-containing protein E1 isoform 2
[Macaca mulatta]
gi|297279639|ref|XP_002801761.1| PREDICTED: cold shock domain-containing protein E1 isoform 3
[Macaca mulatta]
gi|332809923|ref|XP_001160588.2| PREDICTED: cold shock domain-containing protein E1 isoform 1 [Pan
troglodytes]
gi|332809929|ref|XP_003308349.1| PREDICTED: cold shock domain-containing protein E1 isoform 5 [Pan
troglodytes]
gi|12643993|sp|O75534|CSDE1_HUMAN RecName: Full=Cold shock domain-containing protein E1; AltName:
Full=N-ras upstream gene protein; AltName: Full=Protein
UNR
gi|56203365|emb|CAI18825.1| cold shock domain containing E1, RNA-binding [Homo sapiens]
gi|119577016|gb|EAW56612.1| cold shock domain containing E1, RNA-binding, isoform CRA_a [Homo
sapiens]
gi|119577019|gb|EAW56615.1| cold shock domain containing E1, RNA-binding, isoform CRA_a [Homo
sapiens]
gi|158261315|dbj|BAF82835.1| unnamed protein product [Homo sapiens]
gi|168269522|dbj|BAG09888.1| cold shock domain-containing protein E1 [synthetic construct]
Length = 798
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 457 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|16758924|ref|NP_446458.1| cold shock domain-containing protein E1 [Rattus norvegicus]
gi|137045|sp|P18395|CSDE1_RAT RecName: Full=Cold shock domain-containing protein E1; AltName:
Full=Protein UNR
gi|57455|emb|CAA36549.1| unnamed protein product [Rattus norvegicus]
Length = 798
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 38.1 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|21450287|ref|NP_659150.1| cold shock domain-containing protein E1 isoform 1 [Mus musculus]
gi|73620670|sp|Q91W50|CSDE1_MOUSE RecName: Full=Cold shock domain-containing protein E1
gi|16877280|gb|AAH16898.1| Cold shock domain containing E1, RNA binding [Mus musculus]
gi|38328232|gb|AAH62097.1| Cold shock domain containing E1, RNA binding [Mus musculus]
gi|74144797|dbj|BAE27372.1| unnamed protein product [Mus musculus]
gi|74212957|dbj|BAE33417.1| unnamed protein product [Mus musculus]
Length = 798
Score = 50.0 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 38.1 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|332520329|ref|ZP_08396791.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
gi|332043682|gb|EGI79877.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
Length = 150
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +Y+ KG+GFI TE + F H S + + +TE V ++ +
Sbjct: 90 KGKVSFYDSSKGFGFII---DTEDQEKYFCHVSGL----IDEITENDKVQFELEKGMKG- 141
Query: 64 KYSAENLKLV 73
+A +K +
Sbjct: 142 -LNAVRVKKI 150
>gi|254992513|ref|ZP_05274703.1| major cold-shock protein [Listeria monocytogenes FSL J2-064]
Length = 39
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 33 LHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+H SA+ G L EGQ V ++ V+ AE + +
Sbjct: 1 VHFSAIEGEGFKTLDEGQSVEFEIVEGQRG--PQAEKVTKL 39
>gi|167622917|ref|YP_001673211.1| cold-shock DNA-binding domain-containing protein [Shewanella
halifaxensis HAW-EB4]
gi|167352939|gb|ABZ75552.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 209
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I ++ KG+GFI + VFLH SA AS G+ G V + V+ D GK
Sbjct: 10 GVIDSWDDAKGFGFIQ---IAKQKQQVFLHISAFASKGIH-PQAGNRVQFHLVK-DKQGK 64
Query: 65 YSAENLKLVPKSS 77
+ A+N +L+ +
Sbjct: 65 WRADNAQLLSGGA 77
>gi|126175891|ref|YP_001052040.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS155]
gi|125999096|gb|ABN63171.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
Length = 203
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N +KG+GFI PE + DVF+H S + + G + + +
Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEVQ 57
Query: 61 ANGKYSAE 68
+GK A
Sbjct: 58 NDGKRKAV 65
>gi|47563679|dbj|BAD20296.1| cold shock protein like [Pseudomonas fluorescens]
Length = 37
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
G++KW+N KGYGFI E G DVF+H A+
Sbjct: 4 RETGNVKWFNDAKGYGFIQRED----GKDVFVHYRAIR 37
>gi|311254536|ref|XP_003125879.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1
[Sus scrofa]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|288941832|ref|YP_003444072.1| cold-shock DNA-binding domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288897204|gb|ADC63040.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
180]
Length = 264
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ ++ KG+GFI P G DVF+H SA+ + ++ G + + +
Sbjct: 13 GTLVRWDDAKGFGFIRPND---GGKDVFVHISALPMRPVPDI--GTRLIFSATDDPQGRG 67
Query: 65 YS 66
Sbjct: 68 PR 69
>gi|74180377|dbj|BAE32354.1| unnamed protein product [Mus musculus]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.1 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|332237741|ref|XP_003268066.1| PREDICTED: cold shock domain-containing protein E1 isoform 1
[Nomascus leucogenys]
gi|332237747|ref|XP_003268069.1| PREDICTED: cold shock domain-containing protein E1 isoform 4
[Nomascus leucogenys]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|293350407|ref|XP_002727448.1| PREDICTED: cold shock domain-containing protein E1-like, partial
[Rattus norvegicus]
Length = 742
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 38.1 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|194210950|ref|XP_001917786.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 1
[Equus caballus]
gi|194210956|ref|XP_001917789.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 3
[Equus caballus]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|164518139|emb|CAP49095.1| putative integron gene cassette protein [uncultured bacterium]
Length = 185
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++ +N D+G+GFI G+ +++F+H S + GQLV++ D
Sbjct: 6 MQIHGNVTKWNDDRGFGFIEAAGTR---EELFVHISEFPRGERPQV--GQLVSFTVAVKD 60
Query: 61 ANGKYSAENL 70
+ A +L
Sbjct: 61 GKKRAIAVSL 70
>gi|149030462|gb|EDL85499.1| upstream of NRAS, isoform CRA_a [Rattus norvegicus]
Length = 768
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 655 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 710
Query: 76 SS 77
Sbjct: 711 GP 712
Score = 38.1 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|117646050|emb|CAL38492.1| hypothetical protein [synthetic construct]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|332237745|ref|XP_003268068.1| PREDICTED: cold shock domain-containing protein E1 isoform 3
[Nomascus leucogenys]
Length = 813
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 212 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 265
Query: 76 SS 77
+
Sbjct: 266 GT 267
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 755
Query: 76 SS 77
Sbjct: 756 GP 757
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 472 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 528
Query: 77 SN 78
SN
Sbjct: 529 SN 530
>gi|224367842|ref|YP_002602005.1| CspG [Desulfobacterium autotrophicum HRM2]
gi|223690558|gb|ACN13841.1| CspG [Desulfobacterium autotrophicum HRM2]
Length = 217
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ RG+I +N +KG+GFITP G +F H + + Q +TY D
Sbjct: 1 MLRRGNITLWNDEKGFGFITP---NAGGKQLFFHIKSCSPHNRR-PAINQSITYSLSV-D 55
Query: 61 ANGKYSAENLKLVPK 75
G+ A + ++P
Sbjct: 56 KQGRPCAVKV-ILPD 69
>gi|117645778|emb|CAL38356.1| hypothetical protein [synthetic construct]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|56117850|ref|NP_009089.4| cold shock domain-containing protein E1 isoform 2 [Homo sapiens]
gi|297279643|ref|XP_002801763.1| PREDICTED: cold shock domain-containing protein E1 isoform 5
[Macaca mulatta]
gi|297279645|ref|XP_002801764.1| PREDICTED: cold shock domain-containing protein E1 isoform 6
[Macaca mulatta]
gi|332809921|ref|XP_003308346.1| PREDICTED: cold shock domain-containing protein E1 isoform 2 [Pan
troglodytes]
gi|332809927|ref|XP_003308348.1| PREDICTED: cold shock domain-containing protein E1 isoform 4 [Pan
troglodytes]
gi|21619086|gb|AAH32446.1| Cold shock domain containing E1, RNA-binding [Homo sapiens]
gi|56203366|emb|CAI18826.1| cold shock domain containing E1, RNA-binding [Homo sapiens]
gi|117646066|emb|CAL38500.1| hypothetical protein [synthetic construct]
gi|119577017|gb|EAW56613.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo
sapiens]
gi|119577022|gb|EAW56618.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo
sapiens]
gi|119577023|gb|EAW56619.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo
sapiens]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|240255574|ref|NP_001155326.1| cold shock domain-containing protein E1 isoform 2 [Mus musculus]
gi|20987700|gb|AAH29688.1| Csde1 protein [Mus musculus]
gi|21619512|gb|AAH31404.1| Csde1 protein [Mus musculus]
gi|74139915|dbj|BAE31796.1| unnamed protein product [Mus musculus]
gi|74150943|dbj|BAE27606.1| unnamed protein product [Mus musculus]
gi|74196030|dbj|BAE30568.1| unnamed protein product [Mus musculus]
gi|74198827|dbj|BAE30641.1| unnamed protein product [Mus musculus]
gi|74204741|dbj|BAE35437.1| unnamed protein product [Mus musculus]
gi|74207308|dbj|BAE30839.1| unnamed protein product [Mus musculus]
gi|74219259|dbj|BAE26763.1| unnamed protein product [Mus musculus]
gi|74220216|dbj|BAE31288.1| unnamed protein product [Mus musculus]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.1 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|197100292|ref|NP_001126684.1| cold shock domain-containing protein E1 [Pongo abelii]
gi|55732349|emb|CAH92877.1| hypothetical protein [Pongo abelii]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|194210952|ref|XP_001917787.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 2
[Equus caballus]
Length = 807
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 206 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 259
Query: 76 SS 77
+
Sbjct: 260 GT 261
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 694 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 749
Query: 76 SS 77
Sbjct: 750 GP 751
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 77 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 132
Query: 76 S 76
Sbjct: 133 E 133
>gi|117644482|emb|CAL37736.1| hypothetical protein [synthetic construct]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|74192859|dbj|BAE34939.1| unnamed protein product [Mus musculus]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 37.7 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI + +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQCSERQAT---LFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|51476573|emb|CAH18269.1| hypothetical protein [Homo sapiens]
Length = 813
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 212 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 265
Query: 76 SS 77
+
Sbjct: 266 GT 267
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 755
Query: 76 SS 77
Sbjct: 756 GP 757
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 472 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 528
Query: 77 SN 78
SN
Sbjct: 529 SN 530
>gi|332809925|ref|XP_003308347.1| PREDICTED: cold shock domain-containing protein E1 isoform 3 [Pan
troglodytes]
Length = 813
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 212 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 265
Query: 76 SS 77
+
Sbjct: 266 GT 267
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 755
Query: 76 SS 77
Sbjct: 756 GP 757
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 472 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 528
Query: 77 SN 78
SN
Sbjct: 529 SN 530
>gi|323166493|gb|EFZ52256.1| cold shock-like protein cspI [Shigella sonnei 53G]
Length = 41
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+F+H SA+ G L EGQ V ++ +A N+ +
Sbjct: 1 MFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG--PAAVNVTAI 41
>gi|194473720|ref|NP_001123995.1| cold shock domain-containing protein E1 isoform 3 [Homo sapiens]
gi|297279641|ref|XP_002801762.1| PREDICTED: cold shock domain-containing protein E1 isoform 4
[Macaca mulatta]
Length = 813
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 212 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 265
Query: 76 SS 77
+
Sbjct: 266 GT 267
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 755
Query: 76 SS 77
Sbjct: 756 GP 757
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138
Query: 76 S 76
Sbjct: 139 E 139
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 472 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 528
Query: 77 SN 78
SN
Sbjct: 529 SN 530
>gi|117645156|emb|CAL38044.1| hypothetical protein [synthetic construct]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|10433950|dbj|BAB14073.1| unnamed protein product [Homo sapiens]
gi|10433969|dbj|BAB14080.1| unnamed protein product [Homo sapiens]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|117921981|ref|YP_871173.1| cold-shock DNA-binding protein family protein [Shewanella sp.
ANA-3]
gi|117614313|gb|ABK49767.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
Length = 192
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ RG + +N +KG+GFI PE + G DVF+H + + G + Y +
Sbjct: 1 MERGILVRWNDEKGFGFIQPE---QQGKDVFIHITVLKHMARK-PQVGDSILYR-TEIQN 55
Query: 62 NGKYSAE 68
+GK A
Sbjct: 56 DGKVKAI 62
>gi|55731729|emb|CAH92569.1| hypothetical protein [Pongo abelii]
Length = 767
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSDFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|152999199|ref|YP_001364880.1| cold-shock DNA-binding domain-containing protein [Shewanella
baltica OS185]
gi|151363817|gb|ABS06817.1| putative cold-shock DNA-binding domain protein [Shewanella
baltica OS185]
Length = 217
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N +KG+GFI PE + DVF+H S + + G + Y +
Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILYQ-TEVQ 57
Query: 61 ANGKYSAE 68
+GK A
Sbjct: 58 NDGKRKAV 65
>gi|119577021|gb|EAW56617.1| cold shock domain containing E1, RNA-binding, isoform CRA_e [Homo
sapiens]
Length = 555
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 160 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 213
Query: 76 SS 77
+
Sbjct: 214 GT 215
Score = 33.9 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 420 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 476
Query: 77 SN 78
SN
Sbjct: 477 SN 478
>gi|16041096|dbj|BAB69715.1| hypothetical protein [Macaca fascicularis]
Length = 531
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|73981075|ref|XP_856559.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 8 [Canis
familiaris]
gi|73981077|ref|XP_856596.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 9 [Canis
familiaris]
Length = 668
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 67 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 120
Query: 76 SS 77
+
Sbjct: 121 GT 122
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 555 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 610
Query: 76 SS 77
Sbjct: 611 GP 612
>gi|124006449|ref|ZP_01691282.1| cold shock protein, putative DNA-binding protein [Microscilla
marina ATCC 23134]
gi|123987862|gb|EAY27542.1| cold shock protein, putative DNA-binding protein [Microscilla
marina ATCC 23134]
Length = 150
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + ++N DKGYGFI +++ + +F+H + V + E +VTY+ V
Sbjct: 89 KGIVTYFNDDKGYGFIK---DSKTKEKIFVHINNVLED----IKENNVVTYEVVMGQKG- 140
Query: 64 KYSAENLKL 72
+A +K+
Sbjct: 141 -PAATEVKV 148
>gi|325926682|ref|ZP_08187995.1| putative membrane protein [Xanthomonas perforans 91-118]
gi|325542917|gb|EGD14367.1| putative membrane protein [Xanthomonas perforans 91-118]
Length = 204
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D
Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTRR-PRDGEIITY-AIERD 55
Query: 61 ANGKYSAENLK 71
A+ + +A ++
Sbjct: 56 AHKRLNATQVR 66
>gi|294625429|ref|ZP_06704060.1| integral membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600252|gb|EFF44358.1| integral membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 204
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D
Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTRR-PRDGEIITY-AIERD 55
Query: 61 ANGKYSAENLK 71
A+ + +A ++
Sbjct: 56 AHKRLNATQVR 66
>gi|21243068|ref|NP_642650.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
306]
gi|21108581|gb|AAM37186.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
306]
Length = 206
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D
Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTRR-PRDGEIITY-AIERD 57
Query: 61 ANGKYSAENLK 71
A+ + +A ++
Sbjct: 58 AHKRLNATQVR 68
>gi|269214459|ref|ZP_05986599.2| cold-shock DNA-binding domain protein [Neisseria lactamica ATCC
23970]
gi|269209733|gb|EEZ76188.1| cold-shock DNA-binding domain protein [Neisseria lactamica ATCC
23970]
Length = 204
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW + +KGYGFI +G ++F H S + + V ++ V + G++
Sbjct: 18 IVKW-DDEKGYGFIRIDG---GNKEIFCHISDFSPRNPR-PEINEAVGFEVVSDGK-GRF 71
Query: 66 SAENLKLV 73
SA+ ++ +
Sbjct: 72 SAKQIRYL 79
>gi|3387902|gb|AAC28634.1| unknown [Homo sapiens]
Length = 467
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|333008660|gb|EGK28126.1| cold shock-like protein cspG [Shigella flexneri K-272]
Length = 70
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA + L G V + V
Sbjct: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRDVEVLIPGLRVEFCRVNGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|261252691|ref|ZP_05945264.1| cold shock domain family protein [Vibrio orientalis CIP 102891]
gi|260936082|gb|EEX92071.1| cold shock domain family protein [Vibrio orientalis CIP 102891]
Length = 155
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++W + +G+GFI + D+F+H S G G V + N NGK
Sbjct: 5 IVRWVDD-RGFGFINSDAYPG---DIFVHVSKFKK-GYRRPKIGDKVEFQIEVN--NGKT 57
Query: 66 SAENLKLVPKSS 77
SA N+ LV
Sbjct: 58 SAHNVLLVGVEP 69
>gi|225076846|ref|ZP_03720045.1| hypothetical protein NEIFLAOT_01897 [Neisseria flavescens
NRL30031/H210]
gi|224951832|gb|EEG33041.1| hypothetical protein NEIFLAOT_01897 [Neisseria flavescens
NRL30031/H210]
Length = 108
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G+I +N +G+G T E + + + + EGQ ++++ +
Sbjct: 1 MRYYGTITRWNSKRGFGAATIEDTGQEIFLALAAFTTLT----RLPAEGQHISFNITEG- 55
Query: 61 ANGKYSAENL 70
G+ AEN+
Sbjct: 56 RRGRKEAENV 65
>gi|304411240|ref|ZP_07392855.1| Excalibur domain protein [Shewanella baltica OS183]
gi|307306535|ref|ZP_07586278.1| Excalibur domain protein [Shewanella baltica BA175]
gi|304350433|gb|EFM14836.1| Excalibur domain protein [Shewanella baltica OS183]
gi|306910826|gb|EFN41254.1| Excalibur domain protein [Shewanella baltica BA175]
Length = 219
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ RG + +N +KG+GFI PE + DVF+H S + + G + + +
Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEVQ 57
Query: 61 ANGKYSAE 68
+GK A
Sbjct: 58 NDGKRKAV 65
>gi|326669944|ref|XP_002663141.2| PREDICTED: cold shock domain-containing protein E1 [Danio rerio]
Length = 836
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFIT E +F H V + L G V + + N GK SA N++ V +
Sbjct: 723 FGFITYEVGES--KKLFFHVKEVQDS--LELQAGDEVEFSVILNQRTGKCSACNVRRVSE 778
Query: 76 SS 77
Sbjct: 779 GP 780
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + + NGK A +++L+P+
Sbjct: 214 FGFIERGDVV---KEIFFHYSEFKGD-LEALQAGDDVEFTIKE--RNGKEVATDVRLLPQ 267
Query: 76 SS 77
+
Sbjct: 268 GT 269
Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 1 MVHRGSIKWYNPDK---GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
+ G + +K YGFI +E +F H S L L G V ++
Sbjct: 24 IRETGVV-----EKLLTSYGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVS 74
Query: 58 QNDANGKYSAENLKLVPKS 76
+ GK A L +
Sbjct: 75 SDRRTGKPIAVKLVKIKAE 93
>gi|16356661|gb|AAL15445.1| NRAS-related protein [Homo sapiens]
Length = 708
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 40.8 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+GFI E +F H V G+ L G V + + N GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNV 704
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.5 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 426 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|262370718|ref|ZP_06064043.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
johnsonii SH046]
gi|262314518|gb|EEY95560.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
johnsonii SH046]
Length = 209
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P ++ VFLH A G + G + Y+ +
Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPNDDSKD--RVFLHIKDFARQGPRPIL-GCALEYNVLV- 55
Query: 60 DANGKYSAENLKLVPKS 76
DA G+Y A+ + + S
Sbjct: 56 DAQGRYRAQQVSYLKAS 72
>gi|294664904|ref|ZP_06730221.1| integral membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605335|gb|EFF48669.1| integral membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 206
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D
Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTRR-PRDGEIITY-AIERD 57
Query: 61 ANGKYSAENLK 71
A+ + +A ++
Sbjct: 58 AHKRLNAAQVR 68
>gi|46580267|ref|YP_011075.1| cold shock domain-containing protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449684|gb|AAS96334.1| cold shock domain protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233750|gb|ADP86604.1| Excalibur domain protein [Desulfovibrio vulgaris RCH1]
Length = 178
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59
M +G I +N ++G+GFI+P+ VF H SA S L E G+ V Y
Sbjct: 1 MFDQGKIAQWNDERGFGFISPDD---GSPRVFAHISAFRS--RHPLPEVGERVLYYLGPP 55
Query: 60 DANGKYSAENLKLVPK 75
G A ++ + +
Sbjct: 56 SPKG-SRASVVRYIDR 70
>gi|254000354|ref|YP_003052417.1| cold-shock DNA-binding domain-containing protein [Methylovorus
sp. SIP3-4]
gi|253987033|gb|ACT51890.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
Length = 201
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59
M ++G I + +G+GFITP G GD VFLH SA + EG VTY+
Sbjct: 1 MRYQGRITTWKDKQGFGFITPNG---GGDPVFLHISAFSHRKRRP--EGDELVTYERTL- 54
Query: 60 DANGKYSAENLKLV 73
DA G+ A + V
Sbjct: 55 DAKGRPHALKVAFV 68
>gi|66566223|ref|XP_397449.2| PREDICTED: cold shock domain-containing protein E1 [Apis mellifera]
Length = 890
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + + N GK SA N
Sbjct: 775 DAVKGPFGFLAYEVDE--GKKLFFHMSEVRDHAI--LQPGDQVEFVLITNQRTGKSSACN 830
Query: 70 LKLVPKS 76
+ + +
Sbjct: 831 VTRLSDA 837
Score = 41.2 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S S L G V + +Q NGK A N+ +P
Sbjct: 286 FGFIERADVV---KEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339
Query: 76 SS 77
S
Sbjct: 340 GS 341
Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 190
Query: 76 S 76
Sbjct: 191 E 191
Score = 36.9 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAENL 70
G+GFI +F H + V ++ G V + +Q+ +N + SA L
Sbjct: 453 GFGFIRCVDRDT---RLFFHFNEVLDVD-REISVGDEVEFTVIQDPSSSFSNNRQSAIRL 508
Query: 71 KLVPKSS 77
K +P +
Sbjct: 509 KHLPAGT 515
>gi|74142169|dbj|BAE31853.1| unnamed protein product [Mus musculus]
gi|74220547|dbj|BAE31489.1| unnamed protein product [Mus musculus]
Length = 622
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 21 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 74
Query: 76 SS 77
+
Sbjct: 75 GT 76
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 509 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 564
Query: 76 SS 77
Sbjct: 565 GP 566
>gi|19354137|gb|AAH24826.1| Csde1 protein [Mus musculus]
Length = 689
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 88 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 141
Query: 76 SS 77
+
Sbjct: 142 GT 143
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 576 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 631
Query: 76 SS 77
Sbjct: 632 GP 633
>gi|262369347|ref|ZP_06062675.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
johnsonii SH046]
gi|262315415|gb|EEY96454.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
johnsonii SH046]
Length = 97
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G +K YN DKG+GFI+ DVF H S + + V ++ V+N
Sbjct: 6 YQGKVKQYNADKGFGFISSPEG-----DVFFHISDFPADS-GEPKRNERVKFNVVEN--G 57
Query: 63 GKYSAENLKLVPKSS 77
+Y A ++ V +S
Sbjct: 58 DRYKAIKIERVEDNS 72
>gi|163788507|ref|ZP_02182953.1| cold shock protein [Flavobacteriales bacterium ALC-1]
gi|159876827|gb|EDP70885.1| cold shock protein [Flavobacteriales bacterium ALC-1]
Length = 151
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + +Y+ KG+GFI TE+ + F H S + + + E VT++ +
Sbjct: 91 NGKVSFYDSSKGFGFII---DTETNEKHFTHVSGI----IDEIMENDKVTFELEKGQRG- 142
Query: 64 KYSAENLKL 72
+A +K
Sbjct: 143 -MNAVKVKK 150
>gi|149577832|ref|XP_001517851.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding
[Ornithorhynchus anatinus]
Length = 687
Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 39.6 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 34.6 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G G V + + G+ A ++L+ ++
Sbjct: 457 GVIVYDDC---GVKLTIAYQAKDLEGSTPPQIGDKVEFSISETKRTGQQIAHCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|197104106|ref|YP_002129483.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
gi|196477526|gb|ACG77054.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
HLK1]
Length = 189
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G I D+GYGF+ + G +++ HR+A+ + G +L G V + +
Sbjct: 119 PQGRIARLFTDEGYGFLESDD----GREIYFHRNALVNGGFEHLAVGDRVRFAESEGVKG 174
Query: 63 GKYSAENLKLVPKSS 77
A + LV ++
Sbjct: 175 --PQASTVHLVKGAA 187
>gi|71281569|ref|YP_266916.1| cold shock DNA-binding domain-containing protein [Colwellia
psychrerythraea 34H]
gi|71147309|gb|AAZ27782.1| cold-shock DNA-binding domain family protein [Colwellia
psychrerythraea 34H]
Length = 201
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G + +N DK +GFITP GS GD +F+H++A+ + ++++ +Q++
Sbjct: 1 MRLTGKLIRWNTDKAFGFITPNGS---GDTIFIHKTALKNRN-RTPKINDIISFSVIQDN 56
Query: 61 AN 62
Sbjct: 57 QG 58
>gi|241758644|ref|ZP_04756758.1| cold-shock DNA-binding domain protein [Neisseria flavescens
SK114]
gi|241321155|gb|EER57351.1| cold-shock DNA-binding domain protein [Neisseria flavescens
SK114]
Length = 169
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G+I +N +G+G T E + + + + EGQ ++++ +
Sbjct: 1 MRYYGTITRWNSKRGFGAATIEDTGQEIFLALAAFTTLT----RLPAEGQHISFNITEG- 55
Query: 61 ANGKYSAENL 70
G+ AEN+
Sbjct: 56 RRGRKEAENV 65
>gi|218463829|ref|ZP_03503920.1| cold-shock DNA-binding domain-containing protein [Rhizobium etli
Kim 5]
Length = 54
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48
M G++K++N DKG+GFI PE +G F + GL LTE
Sbjct: 1 MAETGTVKFFNTDKGFGFIKPEPGAAAGYISFHNFCRPRPPGLAGLTE 48
>gi|72116887|ref|XP_788134.1| PREDICTED: similar to snEchinoidin [Strongylocentrotus purpuratus]
gi|115950839|ref|XP_001185543.1| PREDICTED: similar to snEchinoidin [Strongylocentrotus purpuratus]
Length = 768
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G +K YN + +GFI + VF H SAV + G V +D
Sbjct: 222 TGVVKQYNDKRRFGFIRVNDTYNK---VFFHISAVPE---KYIEVGDEVRFDLFVGPKG 274
Score = 34.3 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G + Y + +GFI + + VF H S V+ + V ++
Sbjct: 308 ATGVVTRYLNRRRFGFIKVDETYSK---VFFHVSEVS---FKPVAVQDQVVFNLYVGPKG 361
>gi|224587820|gb|ACN58720.1| Cold shock domain-containing protein E1 [Salmo salar]
Length = 196
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFIT E +F H V GL L G V + + N GK SA N++ V +
Sbjct: 83 FGFITYEVGES--KKLFFHVKEVH-DGL-ELQTGDEVEFSVILNQRTGKCSACNVRRVSE 138
Query: 76 SS 77
Sbjct: 139 GP 140
>gi|152986409|ref|YP_001348696.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
gi|150961567|gb|ABR83592.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
Length = 238
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G+++FLH SA +G V + D
Sbjct: 12 MEKPGMISRWYDDKGFGFIQP---KAGGEEIFLHISAFRGD--RRPLQGDQVWF-LASQD 65
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 66 ARGRLRAERARL 77
>gi|330885139|gb|EGH19288.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
4]
Length = 36
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
+N +KG+GFITP +SGDD+F+H A+ S G +L EG
Sbjct: 1 FNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 36
>gi|167625421|ref|YP_001675715.1| cold-shock DNA-binding domain-containing protein [Shewanella
halifaxensis HAW-EB4]
gi|167355443|gb|ABZ78056.1| putative cold-shock DNA-binding domain protein [Shewanella
halifaxensis HAW-EB4]
Length = 258
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGST------ESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
M+H+G + +N KG+GFI E + + +VF+H SA+ L G + +
Sbjct: 1 MIHKGQLVRWNDAKGFGFIRIEQAHDINQPANANHEVFIHVSALGLIPRRPLV-GDTLFF 59
Query: 55 DYVQNDANGKYSAENLKLVPKSSN 78
+ +GK A ++ +
Sbjct: 60 QIL-TQKDGKQRAVEARIEGMGGS 82
>gi|91791805|ref|YP_561456.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
gi|91713807|gb|ABE53733.1| cold-shock DNA-binding protein family [Shewanella denitrificans
OS217]
Length = 239
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 2 VHRGSIKWYNPDKGYGFITPEG----------STESGDDVFLHRSAVASAGLFNLTEGQL 51
+ G++ +N KG+GFI PE DVF+H S + G
Sbjct: 1 MENGTLVRWNEGKGFGFIQPEQKITCLLNNKPDEALNIDVFIHISTLKHMARK-PKVGDN 59
Query: 52 VTYDYVQNDANGKYSA 67
+ ++ + A+GK A
Sbjct: 60 IEFE-RELQADGKVRA 74
>gi|195998678|ref|XP_002109207.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens]
gi|190587331|gb|EDV27373.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens]
Length = 116
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G ++ DKG+GFI PE S D +F+H S + + L G V +
Sbjct: 41 GVCHDFHRDKGHGFIKPEDS---NDLIFVHISDINGEYV--LKAGDAVKFKTCPLPPKCD 95
Query: 64 KYSAENLKLVPK 75
K A ++ +V
Sbjct: 96 KLQAVDVTIVDA 107
>gi|319637794|ref|ZP_07992560.1| cold-shock DNA-binding domain-containing protein [Neisseria
mucosa C102]
gi|317400949|gb|EFV81604.1| cold-shock DNA-binding domain-containing protein [Neisseria
mucosa C102]
Length = 169
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G+I +N +G+G T E + + + + EGQ ++++ +
Sbjct: 1 MRYYGTITRWNSKRGFGAATIEDTGQEIFLALAAFTTLT----RLPAEGQHISFNITEG- 55
Query: 61 ANGKYSAENL 70
G+ AEN+
Sbjct: 56 RRGRKEAENV 65
>gi|313225295|emb|CBY06769.1| unnamed protein product [Oikopleura dioica]
Length = 834
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 3 HRGSIKWYNPD-------------KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48
G+++ YN KG YGFI + +VF H + + + +L
Sbjct: 649 KTGTVRAYNVQLKRKQQQSTIESIKGEYGFINYQEGEGDSKNVFFHATNLIEVSIADLGV 708
Query: 49 GQLVTYDYVQNDANGKYSAENLKLVPKSS 77
G +V + + N +G A ++LV K++
Sbjct: 709 GDIVKFSVIHNKRSGNTCAAGIRLVKKAA 737
Score = 41.2 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
YGFI S +F H S VA+ G L V ++ + ++ NG+ A + +P
Sbjct: 64 YGFIDVLDSRG---RIFFHFSQVANGGNNEQLRVADEVEFEMIMDERNGRIVASKVVRLP 120
Query: 75 KSS 77
+ +
Sbjct: 121 RGT 123
Score = 40.4 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S VA+ + +L G V + + K A N+ L+P
Sbjct: 221 FGFIKRAEVAV---EIFFHYSQVAAD-VPDLRVGNDVEFSIE--NRKDKEVAINVSLLPD 274
Query: 76 SS 77
S
Sbjct: 275 GS 276
>gi|330993460|ref|ZP_08317395.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1]
gi|329759490|gb|EGG75999.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1]
Length = 49
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 25 TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+ G DVF+H +AV +AGL L E Q V+YD GK +A NLK +
Sbjct: 3 DDGGKDVFVHITAVQAAGLRGLNEDQAVSYDIAME--RGKAAATNLKAL 49
>gi|313669281|ref|YP_004049565.1| cold-shock dna-binding domain protein [Neisseria lactamica
ST-640]
gi|313006743|emb|CBN88213.1| putative cold-shock dna-binding domain protein [Neisseria
lactamica 020-06]
Length = 191
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDAN 62
+G I ++ DKGYGFI E ++F H S + L E V+++ V +
Sbjct: 2 KGKIVRWHDDKGYGFIRTESGEG---EIFCHISDFLQRNPRPGLDE--QVSFEVVSDGK- 55
Query: 63 GKYSAENLKLV 73
G++SA+ ++ +
Sbjct: 56 GRFSAKQIRYL 66
>gi|213023272|ref|ZP_03337719.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213609835|ref|ZP_03369661.1| cold shock protein CspE [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 38
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
H SA+ + G L EGQ V ++ SA N+ +
Sbjct: 1 HFSAIQTNGFKTLAEGQRVEFEITNGAKG--PSAANVTAL 38
>gi|288575211|ref|ZP_05976526.2| cold shock domain protein [Neisseria mucosa ATCC 25996]
gi|288568179|gb|EFC89739.1| cold shock domain protein [Neisseria mucosa ATCC 25996]
Length = 221
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G+I +N ++ +G I E G ++F SA + EGQ V+++ ++
Sbjct: 1 MRHFGTIIRWNDNRRFGAIREENM---GKEIFAPLSAFTTLPHP-PAEGQRVSFEIIKG- 55
Query: 61 ANGKYSAENL 70
G+ AEN+
Sbjct: 56 RRGRDEAENI 65
>gi|331004619|ref|ZP_08328084.1| hypothetical protein HMPREF0491_02946 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410488|gb|EGG89918.1| hypothetical protein HMPREF0491_02946 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 737
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
++G+GFI E D F H S V L EG+++ ++ D GK A N++
Sbjct: 10 KERGFGFILGEDK----KDYFFHISQVKYCSWGELAEGEVLEFETK--DVKGKLQAFNIR 63
Query: 72 L 72
Sbjct: 64 K 64
>gi|293404282|ref|ZP_06648276.1| cold shock-like protein cspH [Escherichia coli FVEC1412]
gi|298380065|ref|ZP_06989670.1| cold shock-like protein cspH [Escherichia coli FVEC1302]
gi|312971119|ref|ZP_07785298.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|291428868|gb|EFF01893.1| cold shock-like protein cspH [Escherichia coli FVEC1412]
gi|298279763|gb|EFI21271.1| cold shock-like protein cspH [Escherichia coli FVEC1302]
gi|310336880|gb|EFQ02047.1| cold shock-like protein cspG [Escherichia coli 1827-70]
gi|323158183|gb|EFZ44277.1| cold shock-like protein cspG [Escherichia coli E128010]
gi|323175878|gb|EFZ61472.1| cold shock-like protein cspG [Escherichia coli 1180]
gi|323190645|gb|EFZ75915.1| cold shock-like protein cspG [Escherichia coli RN587/1]
gi|332767783|gb|EGJ97974.1| cold shock protein CspG [Shigella flexneri 2930-71]
Length = 66
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA L G V + V
Sbjct: 2 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 57
Query: 64 KYSAENL 70
+A N+
Sbjct: 58 -PTAANV 63
>gi|225077021|ref|ZP_03720220.1| hypothetical protein NEIFLAOT_02073 [Neisseria flavescens
NRL30031/H210]
gi|224951578|gb|EEG32787.1| hypothetical protein NEIFLAOT_02073 [Neisseria flavescens
NRL30031/H210]
Length = 191
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG I ++ +KGYGFI +G ++F H S + + V ++ V + G
Sbjct: 2 RGVIAKWDDEKGYGFIRIDG---GNKEIFCHISNFSPRNPR-PEINEAVGFEVVSDGK-G 56
Query: 64 KYSAENLKLV 73
++SA+ ++ +
Sbjct: 57 RFSAKQIRYL 66
>gi|313661504|ref|NP_001186365.1| cold shock domain-containing protein E1 [Danio rerio]
Length = 798
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFIT E +F H V + L G V + + N GK SA N++ V +
Sbjct: 685 FGFITYEVGES--KKLFFHVKEVQDS--LELQAGDEVEFSVILNQRTGKCSACNVRRVSE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + + NGK A +++L+P+
Sbjct: 195 FGFIERGDVV---KEIFFHYSEFKGD-LEALQAGDDVEFTIKE--RNGKEVATDVRLLPQ 248
Query: 76 SS 77
+
Sbjct: 249 GT 250
Score = 37.7 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 1 MVHRGSIKWYNPDK---GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
+ G + +K YGFI +E +F H S L L G V ++
Sbjct: 24 IRETGVV-----EKLLTSYGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVS 74
Query: 58 QNDANGKYSAENLKLVPKS 76
+ GK A L +
Sbjct: 75 SDRRTGKPIAVKLVKIKAE 93
>gi|226953538|ref|ZP_03824002.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|294649474|ref|ZP_06726898.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
gi|226835716|gb|EEH68099.1| cold shock protein [Acinetobacter sp. ATCC 27244]
gi|292824644|gb|EFF83423.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
Length = 97
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G +K YNPDKG+GFI + DVF H S SA + V + V+N
Sbjct: 6 YQGKVKQYNPDKGFGFI-----GTTEGDVFFHISDFPSAE-GEPKRNEKVKFAVVENQ-- 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ V +
Sbjct: 58 GKFKAVQIERVDPNP 72
>gi|323976632|gb|EGB71720.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TW10509]
Length = 70
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA L G V + V
Sbjct: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|26987372|ref|NP_742797.1| cold shock DNA-binding domain-containing protein [Pseudomonas
putida KT2440]
gi|24982026|gb|AAN66261.1|AE016254_8 cold shock DNA-binding domain protein [Pseudomonas putida KT2440]
Length = 246
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G ++ + P+KG+GFI + G F+H V L +GQ V ++
Sbjct: 14 GVVRSFMPEKGFGFIQGDD----GRSYFVHIKNVEGG---ELFDGQSVAFEGQPGPKG-- 64
Query: 65 YSAENLKLVPKSS 77
Y A +K +
Sbjct: 65 YRAVKVKPGERPP 77
>gi|221052274|ref|XP_002257713.1| cold-shock protein [Plasmodium knowlesi strain H]
gi|193807544|emb|CAQ38049.1| cold-shock protein, putative [Plasmodium knowlesi strain H]
Length = 144
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 47/111 (42%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---------------------- 41
G++ ++ KGYGFI P G D+F+H + + A
Sbjct: 33 TGTVIKFDRRKGYGFIKPND---GGPDIFVHYTDICQARTFSLTTEEKKKLSWCSRVDMP 89
Query: 42 ----------------------GLFNLTEGQLVTYDYVQNDANGKYSAENL 70
L G+ V + + + A N+
Sbjct: 90 PRQEEYNYGNDNPSAKKEQIKTEFKYLVPGERVKFYVTYDQQSHSTKAINV 140
>gi|307823226|ref|ZP_07653456.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
gi|307736001|gb|EFO06848.1| cold-shock DNA-binding domain protein [Methylobacter
tundripaludum SV96]
Length = 190
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +N DKG+GFI PE ++VF+H SA+ + + G ++ Y + +G
Sbjct: 6 KGKLNRWNDDKGFGFIIPEN---GNNEVFIHISALKNMSRRPVV-GDVILYQLHVGN-DG 60
Query: 64 KYSAENLKL 72
K A N K+
Sbjct: 61 KNKAINAKI 69
>gi|255065802|ref|ZP_05317657.1| putative cold shock DNA-binding membrane protein [Neisseria sicca
ATCC 29256]
gi|255050120|gb|EET45584.1| putative cold shock DNA-binding membrane protein [Neisseria sicca
ATCC 29256]
Length = 429
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+I ++ KGYGFI +++ +F H SA GQ V++ + +
Sbjct: 215 GTITTWDDAKGYGFIRFGDESQN---IFFHISAYHYNTCR-PQTGQRVSFYCNRPIEGNR 270
Query: 65 YSAENLKLVPKSS 77
A + + +
Sbjct: 271 QQAVKVVRLGDEA 283
>gi|209735380|gb|ACI68559.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|209738580|gb|ACI70159.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
Length = 111
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEG 49
G++KW+N GYGFI + +DVF+H++A+ L ++ +G
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPKKYLRSVGDG 86
>gi|126313513|ref|XP_001362186.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding,
isoform 1 [Monodelphis domestica]
Length = 798
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.3 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G G V + + G+ +A ++L+ ++
Sbjct: 457 GIIVYDDC---GVKLTIAYQAKDLEGSTPPQIGDKVEFSVSEAKRTGQQTATCVRLLGRN 513
Query: 77 SN 78
SN
Sbjct: 514 SN 515
>gi|332827423|gb|EGK00175.1| hypothetical protein HMPREF9455_03507 [Dysgonomonas gadei ATCC
BAA-286]
Length = 150
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G ++++NPDKGYGFI GST D F H S+ + ++T+G +VT++ +
Sbjct: 85 NGRVEYFNPDKGYGFIKHTGST---DKYFFHISSAPA----SITDGNMVTFELERGQKG- 136
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 137 -MNAVRITL 144
>gi|148232966|ref|NP_001090026.1| cold shock domain containing E1, RNA-binding [Xenopus laevis]
gi|63101211|gb|AAH94485.1| MGC114719 protein [Xenopus laevis]
Length = 781
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + D NGK A +++++P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-IEALQPGDDVEFTIK--DRNGKEVATDVRILPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK S N+ L+ K
Sbjct: 668 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSGCNVTLISK 723
Query: 76 SSN 78
Sbjct: 724 GPE 726
Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 36 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSADRRTGKPIAVKLVKIKT 91
Query: 76 S 76
Sbjct: 92 E 92
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 45 NLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
L EG V+++ + + A N++ +P +
Sbjct: 309 TLLEGDRVSFNISTDRRDKLERATNIEFLPDT 340
>gi|316967791|gb|EFV52174.1| DNA-binding protein A [Trichinella spiralis]
Length = 377
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 55/118 (46%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR--------------SAVASAG------- 42
+G +KW+N GYGFI +G+D+F+H+ +A+ G
Sbjct: 122 KGKVKWFNVKNGYGFINRLD---TGEDIFVHQVSCSSESLFVCRRRNALVRLGLPAGDGT 178
Query: 43 -----------------------------LFNLTEGQLVTYDYVQNDANGKYSAENLK 71
L +L + ++V +D V A N+
Sbjct: 179 RCTGSAVWMVNKLGWANSTAIIKNNPNKFLRSLGDEEMVEFDVVDGSKG--PEAANVT 234
>gi|294886195|ref|XP_002771604.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC
50983]
gi|239875310|gb|EER03420.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC
50983]
Length = 624
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 16/88 (18%)
Query: 4 RGSIKWYNPDKGYGFITP-------------EGSTESGDDVFLHRSAVASAG-LFNLTEG 49
+G IK+Y+P + +G+IT E ++ S DD++ +R + A + L G
Sbjct: 136 KGRIKFYSPQRHFGYITVVGSPEGAEENEEDEDTSASQDDLYFNRRDLLDANEIEKLDTG 195
Query: 50 QLVTYDYVQNDANGKYSAENLKLVPKSS 77
VT+D ++ NG++SA N+K+ +
Sbjct: 196 MPVTFDIAED--NGQFSAVNVKVRTEEP 221
>gi|71895719|ref|NP_001025700.1| cold shock domain containing E1, RNA-binding [Xenopus (Silurana)
tropicalis]
gi|63100223|gb|AAH95920.1| cold shock domain containing E1, RNA-binding [Xenopus (Silurana)
tropicalis]
Length = 799
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK S N+ L+ K
Sbjct: 686 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSGCNVTLISK 741
Query: 76 SSN 78
Sbjct: 742 GPE 744
Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 36 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSADRRTGKPIAVKLVKIKT 91
Query: 76 S 76
Sbjct: 92 E 92
Score = 34.3 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
F+ P+ D L EG V ++ + + A N++ +P +
Sbjct: 291 FVIPKELPFGDKDTKSKV---------TLLEGDRVRFNISTDRRDKLERATNIEFLPDT 340
>gi|15800909|ref|NP_286925.1| cold shock-like protein [Escherichia coli O157:H7 EDL933]
gi|15830398|ref|NP_309171.1| cold shock-like protein [Escherichia coli O157:H7 str. Sakai]
gi|16128955|ref|NP_415509.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MG1655]
gi|24112401|ref|NP_706911.1| cold shock-like protein [Shigella flexneri 2a str. 301]
gi|26247007|ref|NP_753047.1| cold shock-like protein cspH [Escherichia coli CFT073]
gi|30062525|ref|NP_836696.1| cold shock-like protein [Shigella flexneri 2a str. 2457T]
gi|74311545|ref|YP_309964.1| cold shock-like protein [Shigella sonnei Ss046]
gi|82544688|ref|YP_408635.1| cold shock-like protein [Shigella boydii Sb227]
gi|82776278|ref|YP_402627.1| cold shock-like protein [Shigella dysenteriae Sd197]
gi|89107839|ref|AP_001619.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. W3110]
gi|91210079|ref|YP_540065.1| cold shock-like protein H [Escherichia coli UTI89]
gi|110641170|ref|YP_668900.1| cold shock-like protein CspH [Escherichia coli 536]
gi|110805002|ref|YP_688522.1| cold shock-like protein [Shigella flexneri 5 str. 8401]
gi|157158514|ref|YP_001462220.1| cold shock DNA-binding protein [Escherichia coli E24377A]
gi|157160507|ref|YP_001457825.1| cold shock DNA-binding protein [Escherichia coli HS]
gi|168747397|ref|ZP_02772419.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|168754309|ref|ZP_02779316.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|168763225|ref|ZP_02788232.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|168767486|ref|ZP_02792493.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|168773675|ref|ZP_02798682.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|168781005|ref|ZP_02806012.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|168787494|ref|ZP_02812501.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|168800618|ref|ZP_02825625.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|170020612|ref|YP_001725566.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli ATCC 8739]
gi|170080647|ref|YP_001729967.1| CspA family stress protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170684041|ref|YP_001744187.1| cold-shock DNA-binding domain-containing protein CspH
[Escherichia coli SMS-3-5]
gi|187730710|ref|YP_001880814.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
gi|188494766|ref|ZP_03002036.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|191166611|ref|ZP_03028440.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|191172410|ref|ZP_03033951.1| cold-shock DNA-binding domain protein CspH [Escherichia coli F11]
gi|193066319|ref|ZP_03047369.1| cold shock DNA-binding protein [Escherichia coli E22]
gi|193070785|ref|ZP_03051719.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194429846|ref|ZP_03062359.1| cold shock DNA-binding protein [Escherichia coli B171]
gi|194438085|ref|ZP_03070178.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|195935246|ref|ZP_03080628.1| CspA family stress protein [Escherichia coli O157:H7 str. EC4024]
gi|208807470|ref|ZP_03249807.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208815635|ref|ZP_03256814.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208822271|ref|ZP_03262590.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209400788|ref|YP_002269714.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209918241|ref|YP_002292325.1| cold shock-like protein [Escherichia coli SE11]
gi|215486105|ref|YP_002328536.1| stress protein, member of the CspA-family [Escherichia coli
O127:H6 str. E2348/69]
gi|217324901|ref|ZP_03440985.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218553575|ref|YP_002386488.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
gi|218557879|ref|YP_002390792.1| stress protein, member of the CspA-family [Escherichia coli S88]
gi|218694522|ref|YP_002402189.1| stress protein, member of the CspA-family [Escherichia coli
55989]
gi|218700499|ref|YP_002408128.1| stress protein, member of the CspA-family [Escherichia coli
IAI39]
gi|218704405|ref|YP_002411924.1| stress protein, member of the CspA-family [Escherichia coli
UMN026]
gi|227884059|ref|ZP_04001864.1| cold shock family protein [Escherichia coli 83972]
gi|237707033|ref|ZP_04537514.1| cold shock DNA-binding protein [Escherichia sp. 3_2_53FAA]
gi|238900248|ref|YP_002926044.1| stress protein, member of the CspA-family [Escherichia coli
BW2952]
gi|253773982|ref|YP_003036813.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161101|ref|YP_003044209.1| stress protein, member of the CspA-family [Escherichia coli B
str. REL606]
gi|254792245|ref|YP_003077082.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. TW14359]
gi|256018752|ref|ZP_05432617.1| stress protein, member of the CspA-family [Shigella sp. D9]
gi|256023310|ref|ZP_05437175.1| stress protein, member of the CspA-family [Escherichia sp.
4_1_40B]
gi|260843236|ref|YP_003221014.1| stress protein CspH [Escherichia coli O103:H2 str. 12009]
gi|260854692|ref|YP_003228583.1| stress protein CspH [Escherichia coli O26:H11 str. 11368]
gi|260867197|ref|YP_003233599.1| stress protein CspH [Escherichia coli O111:H- str. 11128]
gi|261227160|ref|ZP_05941441.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255726|ref|ZP_05948259.1| stress protein CspH [Escherichia coli O157:H7 str. FRIK966]
gi|291281987|ref|YP_003498805.1| Cold shock-like protein cspH [Escherichia coli O55:H7 str.
CB9615]
gi|293409366|ref|ZP_06652942.1| predicted protein [Escherichia coli B354]
gi|293414264|ref|ZP_06656913.1| cold shock protein [Escherichia coli B185]
gi|293433283|ref|ZP_06661711.1| cold shock-like protein cspH [Escherichia coli B088]
gi|297519755|ref|ZP_06938141.1| Cold shock-like protein cspH [Escherichia coli OP50]
gi|300819432|ref|ZP_07099629.1| cold-shock DNA-binding domain protein [Escherichia coli MS 107-1]
gi|300823952|ref|ZP_07104075.1| cold-shock DNA-binding domain protein [Escherichia coli MS 119-7]
gi|300896361|ref|ZP_07114903.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
gi|300902845|ref|ZP_07120793.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
gi|300920967|ref|ZP_07137357.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
gi|300925326|ref|ZP_07141216.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
gi|300929242|ref|ZP_07144721.1| cold-shock DNA-binding domain protein [Escherichia coli MS 187-1]
gi|300937664|ref|ZP_07152470.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
gi|300949635|ref|ZP_07163621.1| cold-shock DNA-binding domain protein [Escherichia coli MS 116-1]
gi|300957865|ref|ZP_07170041.1| cold-shock DNA-binding domain protein [Escherichia coli MS 175-1]
gi|300978252|ref|ZP_07174200.1| cold-shock DNA-binding domain protein [Escherichia coli MS 45-1]
gi|300982794|ref|ZP_07176304.1| cold-shock DNA-binding domain protein [Escherichia coli MS 200-1]
gi|301022615|ref|ZP_07186486.1| cold-shock DNA-binding domain protein [Escherichia coli MS 196-1]
gi|301023110|ref|ZP_07186917.1| cold-shock DNA-binding domain protein [Escherichia coli MS 69-1]
gi|301047757|ref|ZP_07194813.1| cold-shock DNA-binding domain protein [Escherichia coli MS 185-1]
gi|301302394|ref|ZP_07208525.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
gi|301327178|ref|ZP_07220444.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
gi|301646376|ref|ZP_07246261.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
gi|306812572|ref|ZP_07446765.1| Cold shock-like protein cspH [Escherichia coli NC101]
gi|307137621|ref|ZP_07496977.1| Cold shock-like protein cspH [Escherichia coli H736]
gi|309795022|ref|ZP_07689442.1| cold-shock DNA-binding domain protein [Escherichia coli MS 145-7]
gi|312968953|ref|ZP_07783160.1| cold shock-like protein cspG [Escherichia coli 2362-75]
gi|331641520|ref|ZP_08342655.1| major cold shock protein Cspa1 [Escherichia coli H736]
gi|331646243|ref|ZP_08347346.1| conserved domain protein [Escherichia coli M605]
gi|331657049|ref|ZP_08358011.1| conserved domain protein [Escherichia coli TA206]
gi|331662396|ref|ZP_08363319.1| major cold shock protein Cspa1 [Escherichia coli TA143]
gi|331667380|ref|ZP_08368244.1| major cold shock protein Cspa1 [Escherichia coli TA271]
gi|331672523|ref|ZP_08373312.1| major cold shock protein Cspa1 [Escherichia coli TA280]
gi|331676779|ref|ZP_08377475.1| conserved domain protein [Escherichia coli H591]
gi|331682494|ref|ZP_08383113.1| major cold shock protein Cspa1 [Escherichia coli H299]
gi|332279829|ref|ZP_08392242.1| predicted protein [Shigella sp. D9]
gi|71154166|sp|P0A984|CSPH_ECO57 RecName: Full=Cold shock-like protein CspH; Short=CSP-H
gi|71154167|sp|P0A983|CSPH_ECOL6 RecName: Full=Cold shock-like protein CspH; Short=CSP-H
gi|71154168|sp|P0A982|CSPH_ECOLI RecName: Full=Cold shock-like protein CspH; Short=CSP-H
gi|71154169|sp|P0A985|CSPH_SHIFL RecName: Full=Cold shock-like protein CspH; Short=CSP-H
gi|12514253|gb|AAG55536.1|AE005292_9 cold shock-like protein [Escherichia coli O157:H7 str. EDL933]
gi|26107407|gb|AAN79590.1|AE016758_194 Cold shock-like protein cspH [Escherichia coli CFT073]
gi|2226345|gb|AAB61742.1| CspH [Escherichia coli str. K-12 substr. W3110]
gi|2367112|gb|AAC74074.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. MG1655]
gi|13360604|dbj|BAB34567.1| cold shock-like protein [Escherichia coli O157:H7 str. Sakai]
gi|24051275|gb|AAN42618.1| cold shock-like protein [Shigella flexneri 2a str. 301]
gi|30040771|gb|AAP16502.1| cold shock-like protein [Shigella flexneri 2a str. 2457T]
gi|73855022|gb|AAZ87729.1| cold shock-like protein [Shigella sonnei Ss046]
gi|81240426|gb|ABB61136.1| cold shock-like protein [Shigella dysenteriae Sd197]
gi|81246099|gb|ABB66807.1| cold shock-like protein [Shigella boydii Sb227]
gi|85674811|dbj|BAA35755.2| stress protein, member of the CspA-family [Escherichia coli str.
K12 substr. W3110]
gi|91071653|gb|ABE06534.1| cold shock-like protein H [Escherichia coli UTI89]
gi|110342762|gb|ABG68999.1| cold shock-like protein CspH [Escherichia coli 536]
gi|110614550|gb|ABF03217.1| cold shock-like protein [Shigella flexneri 5 str. 8401]
gi|157066187|gb|ABV05442.1| cold shock DNA-binding protein [Escherichia coli HS]
gi|157080544|gb|ABV20252.1| cold shock DNA-binding protein [Escherichia coli E24377A]
gi|169755540|gb|ACA78239.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|169888482|gb|ACB02189.1| stress protein, member of the CspA-family [Escherichia coli str.
K-12 substr. DH10B]
gi|170521759|gb|ACB19937.1| cold-shock DNA-binding domain protein CspH [Escherichia coli
SMS-3-5]
gi|187427702|gb|ACD06976.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
gi|187770359|gb|EDU34203.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|188017978|gb|EDU56100.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|188489965|gb|EDU65068.1| cold shock DNA-binding protein [Escherichia coli 53638]
gi|189001378|gb|EDU70364.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|189358141|gb|EDU76560.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|189363304|gb|EDU81723.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|189366626|gb|EDU85042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|189372729|gb|EDU91145.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|189377097|gb|EDU95513.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|190903416|gb|EDV63136.1| cold shock DNA-binding protein [Escherichia coli B7A]
gi|190907294|gb|EDV66892.1| cold-shock DNA-binding domain protein CspH [Escherichia coli F11]
gi|192926026|gb|EDV80670.1| cold shock DNA-binding protein [Escherichia coli E22]
gi|192955896|gb|EDV86365.1| cold shock DNA-binding protein [Escherichia coli E110019]
gi|194412128|gb|EDX28437.1| cold shock DNA-binding protein [Escherichia coli B171]
gi|194423021|gb|EDX39015.1| cold shock DNA-binding protein [Escherichia coli 101-1]
gi|208727271|gb|EDZ76872.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208732283|gb|EDZ80971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208737756|gb|EDZ85439.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209162188|gb|ACI39621.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209774138|gb|ACI85381.1| cold shock-like protein [Escherichia coli]
gi|209774140|gb|ACI85382.1| cold shock-like protein [Escherichia coli]
gi|209774142|gb|ACI85383.1| cold shock-like protein [Escherichia coli]
gi|209774144|gb|ACI85384.1| cold shock-like protein [Escherichia coli]
gi|209774146|gb|ACI85385.1| cold shock-like protein [Escherichia coli]
gi|209911500|dbj|BAG76574.1| cold shock-like protein [Escherichia coli SE11]
gi|215264177|emb|CAS08521.1| stress protein, member of the CspA-family [Escherichia coli
O127:H6 str. E2348/69]
gi|217321122|gb|EEC29546.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218351254|emb|CAU96958.1| stress protein, member of the CspA-family [Escherichia coli
55989]
gi|218360343|emb|CAQ97893.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
gi|218364648|emb|CAR02334.1| stress protein, member of the CspA-family [Escherichia coli S88]
gi|218370485|emb|CAR18292.1| stress protein, member of the CspA-family [Escherichia coli
IAI39]
gi|218431502|emb|CAR12380.1| stress protein, member of the CspA-family [Escherichia coli
UMN026]
gi|222032704|emb|CAP75443.1| Cold shock-like protein cspH [Escherichia coli LF82]
gi|226898243|gb|EEH84502.1| cold shock DNA-binding protein [Escherichia sp. 3_2_53FAA]
gi|227838811|gb|EEJ49277.1| cold shock family protein [Escherichia coli 83972]
gi|238863579|gb|ACR65577.1| stress protein, member of the CspA-family [Escherichia coli
BW2952]
gi|242376802|emb|CAQ31515.1| stress protein, member of the CspA family [Escherichia coli
BL21(DE3)]
gi|253325026|gb|ACT29628.1| cold-shock DNA-binding domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973002|gb|ACT38673.1| stress protein, member of the CspA-family [Escherichia coli B
str. REL606]
gi|253977216|gb|ACT42886.1| stress protein, member of the CspA-family [Escherichia coli
BL21(DE3)]
gi|254591645|gb|ACT71006.1| stress protein, member of the CspA-family [Escherichia coli
O157:H7 str. TW14359]
gi|257753341|dbj|BAI24843.1| stress protein CspH [Escherichia coli O26:H11 str. 11368]
gi|257758383|dbj|BAI29880.1| stress protein CspH [Escherichia coli O103:H2 str. 12009]
gi|257763553|dbj|BAI35048.1| stress protein CspH [Escherichia coli O111:H- str. 11128]
gi|260449866|gb|ACX40288.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|281178105|dbj|BAI54435.1| cold shock-like protein [Escherichia coli SE15]
gi|281600352|gb|ADA73336.1| Cold shock-like protein cspH [Shigella flexneri 2002017]
gi|290761860|gb|ADD55821.1| Cold shock-like protein cspH [Escherichia coli O55:H7 str.
CB9615]
gi|291324102|gb|EFE63524.1| cold shock-like protein cspH [Escherichia coli B088]
gi|291434322|gb|EFF07295.1| cold shock protein [Escherichia coli B185]
gi|291469834|gb|EFF12318.1| predicted protein [Escherichia coli B354]
gi|294493039|gb|ADE91795.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
gi|299881187|gb|EFI89398.1| cold-shock DNA-binding domain protein [Escherichia coli MS 196-1]
gi|300300366|gb|EFJ56751.1| cold-shock DNA-binding domain protein [Escherichia coli MS 185-1]
gi|300307059|gb|EFJ61579.1| cold-shock DNA-binding domain protein [Escherichia coli MS 200-1]
gi|300315436|gb|EFJ65220.1| cold-shock DNA-binding domain protein [Escherichia coli MS 175-1]
gi|300359772|gb|EFJ75642.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
gi|300397231|gb|EFJ80769.1| cold-shock DNA-binding domain protein [Escherichia coli MS 69-1]
gi|300405112|gb|EFJ88650.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
gi|300409717|gb|EFJ93255.1| cold-shock DNA-binding domain protein [Escherichia coli MS 45-1]
gi|300412087|gb|EFJ95397.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
gi|300418548|gb|EFK01859.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
gi|300450966|gb|EFK14586.1| cold-shock DNA-binding domain protein [Escherichia coli MS 116-1]
gi|300457312|gb|EFK20805.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
gi|300462808|gb|EFK26301.1| cold-shock DNA-binding domain protein [Escherichia coli MS 187-1]
gi|300523584|gb|EFK44653.1| cold-shock DNA-binding domain protein [Escherichia coli MS 119-7]
gi|300528028|gb|EFK49090.1| cold-shock DNA-binding domain protein [Escherichia coli MS 107-1]
gi|300842233|gb|EFK69993.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
gi|300846211|gb|EFK73971.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
gi|301075412|gb|EFK90218.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
gi|305853335|gb|EFM53774.1| Cold shock-like protein cspH [Escherichia coli NC101]
gi|307552813|gb|ADN45588.1| cold shock-like protein H [Escherichia coli ABU 83972]
gi|307627599|gb|ADN71903.1| Cold shock-like protein cspH [Escherichia coli UM146]
gi|308121326|gb|EFO58588.1| cold-shock DNA-binding domain protein [Escherichia coli MS 145-7]
gi|309701266|emb|CBJ00566.1| stress protein, member of the CspA-family [Escherichia coli ETEC
H10407]
gi|312286355|gb|EFR14268.1| cold shock-like protein cspG [Escherichia coli 2362-75]
gi|312945494|gb|ADR26321.1| stress protein CspH [Escherichia coli O83:H1 str. NRG 857C]
gi|313650760|gb|EFS15161.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
gi|315060273|gb|ADT74600.1| stress protein, member of the CspA-family [Escherichia coli W]
gi|315135639|dbj|BAJ42798.1| cold shock-like protein cspH [Escherichia coli DH1]
gi|315258036|gb|EFU38004.1| cold-shock DNA-binding domain protein [Escherichia coli MS 85-1]
gi|315287612|gb|EFU47018.1| cold-shock DNA-binding domain protein [Escherichia coli MS 110-3]
gi|315291157|gb|EFU50520.1| cold-shock DNA-binding domain protein [Escherichia coli MS 153-1]
gi|315296283|gb|EFU55589.1| cold-shock DNA-binding domain protein [Escherichia coli MS 16-3]
gi|320175184|gb|EFW50294.1| Cold shock protein CspH [Shigella dysenteriae CDC 74-1112]
gi|320178569|gb|EFW53534.1| Cold shock protein CspH [Shigella boydii ATCC 9905]
gi|320187199|gb|EFW61900.1| Cold shock protein CspH [Shigella flexneri CDC 796-83]
gi|320192514|gb|EFW67156.1| Cold shock protein CspH [Escherichia coli O157:H7 str. EC1212]
gi|320196523|gb|EFW71146.1| Cold shock protein CspH [Escherichia coli WV_060327]
gi|320200217|gb|EFW74805.1| Cold shock protein CspH [Escherichia coli EC4100B]
gi|320637856|gb|EFX07648.1| cold shock-like protein CspH [Escherichia coli O157:H7 str.
G5101]
gi|320642981|gb|EFX12182.1| cold shock-like protein CspH [Escherichia coli O157:H- str.
493-89]
gi|320648438|gb|EFX17093.1| cold shock-like protein CspH [Escherichia coli O157:H- str. H
2687]
gi|320653755|gb|EFX21829.1| cold shock-like protein CspH [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659597|gb|EFX27160.1| cold shock-like protein CspH [Escherichia coli O55:H7 str. USDA
5905]
gi|320664368|gb|EFX31519.1| cold shock-like protein CspH [Escherichia coli O157:H7 str.
LSU-61]
gi|323157488|gb|EFZ43598.1| cold shock-like protein cspG [Escherichia coli EPECa14]
gi|323174904|gb|EFZ60519.1| cold shock-like protein cspG [Escherichia coli LT-68]
gi|323379167|gb|ADX51435.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323938093|gb|EGB34355.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1520]
gi|323942903|gb|EGB39068.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323947222|gb|EGB43230.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323953316|gb|EGB49182.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H252]
gi|323958281|gb|EGB53990.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H263]
gi|323962874|gb|EGB58449.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H489]
gi|323967236|gb|EGB62660.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli M863]
gi|323973136|gb|EGB68328.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|324009921|gb|EGB79140.1| cold-shock DNA-binding domain protein [Escherichia coli MS 57-2]
gi|324013377|gb|EGB82596.1| cold-shock DNA-binding domain protein [Escherichia coli MS 60-1]
gi|324019121|gb|EGB88340.1| cold-shock DNA-binding domain protein [Escherichia coli MS 117-3]
gi|324117148|gb|EGC11056.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E1167]
gi|326338569|gb|EGD62396.1| Cold shock protein CspH [Escherichia coli O157:H7 str. 1125]
gi|326347790|gb|EGD71506.1| Cold shock protein CspH [Escherichia coli O157:H7 str. 1044]
gi|327253386|gb|EGE65024.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
gi|330910755|gb|EGH39265.1| cold shock protein CspH [Escherichia coli AA86]
gi|331038318|gb|EGI10538.1| major cold shock protein Cspa1 [Escherichia coli H736]
gi|331044995|gb|EGI17122.1| conserved domain protein [Escherichia coli M605]
gi|331055297|gb|EGI27306.1| conserved domain protein [Escherichia coli TA206]
gi|331060818|gb|EGI32782.1| major cold shock protein Cspa1 [Escherichia coli TA143]
gi|331064965|gb|EGI36860.1| major cold shock protein Cspa1 [Escherichia coli TA271]
gi|331070166|gb|EGI41532.1| major cold shock protein Cspa1 [Escherichia coli TA280]
gi|331075468|gb|EGI46766.1| conserved domain protein [Escherichia coli H591]
gi|331080125|gb|EGI51304.1| major cold shock protein Cspa1 [Escherichia coli H299]
gi|332092463|gb|EGI97536.1| cold shock-like protein cspG [Shigella boydii 5216-82]
gi|332093477|gb|EGI98535.1| cold shock-like protein cspG [Shigella boydii 3594-74]
gi|332102181|gb|EGJ05527.1| predicted protein [Shigella sp. D9]
gi|332342431|gb|AEE55765.1| cold shock-like protein CspG [Escherichia coli UMNK88]
gi|332759842|gb|EGJ90143.1| cold shock-like protein cspG [Shigella flexneri 2747-71]
gi|332762774|gb|EGJ93037.1| cold shock-like protein cspG [Shigella flexneri K-671]
gi|333019957|gb|EGK39228.1| cold shock-like protein cspG [Shigella flexneri K-304]
Length = 70
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA L G V + V
Sbjct: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|291398202|ref|XP_002715790.1| PREDICTED: upstream of NRAS isoform 2 [Oryctolagus cuniculus]
Length = 798
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 740
Query: 76 SS 77
Sbjct: 741 GP 742
Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKS 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|145539083|ref|XP_001455236.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423035|emb|CAK87839.1| unnamed protein product [Paramecium tetraurelia]
Length = 425
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD-- 55
+ G +K+++ K YGFI + D+F+H + AG L +G L+ +
Sbjct: 337 YTGRLKFFDEQKNYGFIVMDDDKS---DIFVHLDDLQKAGVTKEVLKTSKQGSLLRFQFN 393
Query: 56 --YVQNDANGKYSAENLKLV 73
A LKL+
Sbjct: 394 CMVYVGKYKKSRKAVELKLL 413
>gi|55731342|emb|CAH92385.1| hypothetical protein [Pongo abelii]
Length = 311
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 67 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 120
Query: 76 SS 77
+
Sbjct: 121 GT 122
>gi|157124890|ref|XP_001660573.1| hypothetical protein AaeL_AAEL010018 [Aedes aegypti]
gi|108873813|gb|EAT38038.1| hypothetical protein AaeL_AAEL010018 [Aedes aegypti]
Length = 982
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ + E G +F H S V G L G V + V N NGK SA N
Sbjct: 866 DSVKGLFGFL--DFEVEEGKKLFFHMSEVQGGGC--LYPGDSVEFSIVTNQRNGKTSACN 921
Query: 70 LKLVPKS 76
+ V +
Sbjct: 922 MIKVADA 928
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + +Q GK A N+ +P
Sbjct: 317 FGFIERADVV---KEIFFHFS--ETDNTIELRPGDDVEF-IIQTRNQGKEVACNIARLPP 370
Query: 76 SS 77
S
Sbjct: 371 GS 372
Score = 39.3 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + +L G V ++ + GK A + +
Sbjct: 159 YGFIQ---CCERQARLFFHFSQFGGT-IEHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 214
Query: 76 S 76
Sbjct: 215 E 215
>gi|291398204|ref|XP_002715791.1| PREDICTED: upstream of NRAS isoform 3 [Oryctolagus cuniculus]
Length = 844
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + D NGK A +++L+P+
Sbjct: 243 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 296
Query: 76 SS 77
+
Sbjct: 297 GT 298
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 786
Query: 76 SS 77
Sbjct: 787 GP 788
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKS 138
Query: 76 S 76
Sbjct: 139 E 139
>gi|258623684|ref|ZP_05718669.1| cold shock domain-containing protein [Vibrio mimicus VM573]
gi|258584036|gb|EEW08800.1| cold shock domain-containing protein [Vibrio mimicus VM573]
Length = 183
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G I + ++G+GFI + DVF+H S G G V + N
Sbjct: 30 KGKILRWVDERGFGFIKSDDL---DGDVFVHISKFPQ-GYRRPQVGDHVEFHLANNQ--P 83
Query: 64 KYSAENLKLVPKSS 77
K SA + +L+
Sbjct: 84 KLSAASARLIGVEP 97
>gi|256846982|ref|ZP_05552428.1| cold shock domain-containing protein CspD [Lactobacillus
coleohominis 101-4-CHN]
gi|256715646|gb|EEU30621.1| cold shock domain-containing protein CspD [Lactobacillus
coleohominis 101-4-CHN]
Length = 77
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ G++K Y P KG+GFI + ++F+H + + + G V + V
Sbjct: 11 LMIIGTVKSYEPTKGWGFIN----SPHDGEIFMHTKGIEKSSRHLIQAGTKVGFVIVPGV 66
Query: 61 ANGKYSAENLKLV 73
+ A ++K++
Sbjct: 67 KG--FQAAHVKVI 77
>gi|126313515|ref|XP_001362268.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding,
isoform 2 [Monodelphis domestica]
Length = 767
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.9 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G G V + + G+ +A ++L+ ++
Sbjct: 426 GIIVYDDC---GVKLTIAYQAKDLEGSTPPQIGDKVEFSVSEAKRTGQQTATCVRLLGRN 482
Query: 77 SN 78
SN
Sbjct: 483 SN 484
>gi|320105220|ref|YP_004180811.1| cold-shock DNA-binding domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319752502|gb|ADV64262.1| cold-shock DNA-binding domain protein [Isosphaera pallida ATCC
43644]
Length = 222
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLVTYDYVQ 58
RG + ++P +G+GF+ E + VF H SA+ SA + G ++++ +
Sbjct: 19 RTRGVVTRFDPKRGFGFVVVE---RTRQKVFFHVSAIRSAAAQSRSQPAPGVVLSFQIDE 75
Query: 59 NDANGKYSAENLKLVPKSS 77
D G A + + S+
Sbjct: 76 TDPRG-PRAIEITVEDGSA 93
>gi|291398200|ref|XP_002715789.1| PREDICTED: upstream of NRAS isoform 1 [Oryctolagus cuniculus]
Length = 767
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 42.0 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 709
Query: 76 SS 77
Sbjct: 710 GP 711
Score = 38.5 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKS 92
Query: 76 S 76
Sbjct: 93 E 93
>gi|291190250|ref|NP_001167093.1| Cold shock domain-containing protein E1 [Salmo salar]
gi|223648082|gb|ACN10799.1| Cold shock domain-containing protein E1 [Salmo salar]
Length = 854
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFIT E +F H V GL L G V + + N GK SA N++ V +
Sbjct: 741 FGFITYEVGES--KKLFFHVKEVH-DGL-ELQTGDEVEFSVILNQRTGKCSACNVRRVSE 796
Query: 76 SS 77
Sbjct: 797 GP 798
Score = 48.1 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 1 MVHRGSIKWYNPDK-GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G + K +GFI ++F H S L L G V + +
Sbjct: 237 MRCQGVV---CATKEAFGFIERADVV---KEIFFHYSEFKGD-LEALQAGDDVEFTIKE- 288
Query: 60 DANGKYSAENLKLVPKSS 77
NGK A +++L+ + +
Sbjct: 289 -RNGKEVATDVRLLAQGT 305
Score = 37.3 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 1 MVHRGSIKWYNPDK---GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
+ G + +K YGFI +E +F H S L L G V ++
Sbjct: 60 IRETGVV-----EKLLTSYGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVS 110
Query: 58 QNDANGKYSAENLKLVPKS 76
+ GK A L +
Sbjct: 111 SDRRTGKPIAVKLLKIKPE 129
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND-ANGKYSAENLKLV 73
G+GFI +F H S V G L V + V + + + A +K +
Sbjct: 413 GFGFIKCVDRDA---RMFFHFSEVLEEG--QLHISDEVEFTVVPDMLSAQRNHAVRIKKL 467
Query: 74 PKSS 77
PK +
Sbjct: 468 PKGT 471
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I+ E G + + G G V + + G+ SA +K++ ++
Sbjct: 513 GVISYEDC---GVKLTVSYHVKDLEGAAQPQAGDKVEFSINEVKRTGQQSAVTIKILNRT 569
Query: 77 SN 78
N
Sbjct: 570 VN 571
>gi|218892082|ref|YP_002440949.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58]
gi|218772308|emb|CAW28090.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58]
Length = 238
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G++VFLH SA +G V + D
Sbjct: 12 MEKPGMISRWYDDKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQD 65
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 66 AQGRLRAERARL 77
>gi|254240344|ref|ZP_04933666.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192]
gi|126193722|gb|EAZ57785.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192]
Length = 240
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G++VFLH SA +G V + D
Sbjct: 14 MEKPGMISRWYDDKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQD 67
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 68 AQGRLRAERARL 79
>gi|254235046|ref|ZP_04928369.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719]
gi|126166977|gb|EAZ52488.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719]
Length = 240
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G++VFLH SA +G V + D
Sbjct: 14 MEKPGMISRWYDDKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQD 67
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 68 AQGRLRAERARL 79
>gi|107101389|ref|ZP_01365307.1| hypothetical protein PaerPA_01002426 [Pseudomonas aeruginosa
PACS2]
Length = 227
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G++VFLH SA +G V + D
Sbjct: 1 MEKPGMISRWYDDKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQD 54
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 55 AQGRLRAERARL 66
>gi|49082146|gb|AAT50473.1| PA1960 [synthetic construct]
Length = 241
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G++VFLH SA +G V + D
Sbjct: 14 MEKPGMISRWYDDKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQD 67
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 68 AQGRLRAERARL 79
>gi|15597156|ref|NP_250650.1| hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
gi|9947958|gb|AAG05348.1|AE004622_10 hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
Length = 240
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 2 VHR-GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ + G I + DKG+GFI P G++VFLH SA +G V + D
Sbjct: 14 MEKPGMISRWYDDKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQD 67
Query: 61 ANGKYSAENLKL 72
A G+ AE +L
Sbjct: 68 AQGRLRAERARL 79
>gi|330867254|gb|EGH01963.1| cold shock protein [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330876902|gb|EGH11051.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
4]
gi|330877324|gb|EGH11473.1| cold shock protein [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330957738|gb|EGH57998.1| cold shock protein [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330966551|gb|EGH66811.1| cold shock protein [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330984849|gb|EGH82952.1| cold shock protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331010117|gb|EGH90173.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 45
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
SGDD+F+H A+ S G +L EGQ V++ + AE ++++
Sbjct: 1 SGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG--MQAEEVQVI 45
>gi|332026461|gb|EGI66589.1| Cold shock domain-containing protein E1 [Acromyrmex echinatior]
Length = 881
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V L G V + V N GK SA N
Sbjct: 766 DAMKGPFGFLAYEVDE--GRKLFFHVSEVRD--HVTLQPGDQVEFVLVTNQRTGKSSACN 821
Query: 70 LKLVPKS 76
+ + +
Sbjct: 822 VTRLSDT 828
Score = 41.6 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S S L G V + +Q NGK A N+ +P
Sbjct: 281 FGFIERADVV---KEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 334
Query: 76 SS 77
S
Sbjct: 335 GS 336
Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 132 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDAVEFEMTYDRRTGKPIASTVSKIGP 187
Query: 76 SS 77
S
Sbjct: 188 VS 189
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAENL 70
G+GFI +F H + V ++ G V + VQ+ +N + SA L
Sbjct: 446 GFGFIRCVERE---PRLFFHFNEVLDVD-REISVGDEVEFTVVQDPSSSFSNTRQSAIRL 501
Query: 71 KLVPKSS 77
K +P +
Sbjct: 502 KHLPMGT 508
>gi|327271517|ref|XP_003220534.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1
[Anolis carolinensis]
Length = 796
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVSE 738
Query: 76 SS 77
+
Sbjct: 739 GA 740
Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAIKLVKIKT 92
Query: 76 SS 77
+
Sbjct: 93 ET 94
Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
G I E G+ + + A G + G V + + G +A +++++
Sbjct: 455 GIIAYEDC---GEKLTIPYQAKDVEGSTSPQIGDKVEFTVCEVKRTGLQTATSVRML 508
Score = 33.9 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
F+ P+ D L EG V ++ + + A N++++P
Sbjct: 291 FVIPKELPFGDKDTKSKV---------TLLEGDHVRFNISTDRRDKLERATNIEVLP 338
>gi|291398206|ref|XP_002715792.1| PREDICTED: upstream of NRAS isoform 4 [Oryctolagus cuniculus]
Length = 813
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + D NGK A +++L+P+
Sbjct: 212 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 265
Query: 76 SS 77
+
Sbjct: 266 GT 267
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 755
Query: 76 SS 77
Sbjct: 756 GP 757
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKS 138
Query: 76 S 76
Sbjct: 139 E 139
>gi|156383918|ref|XP_001633079.1| predicted protein [Nematostella vectensis]
gi|156220144|gb|EDO41016.1| predicted protein [Nematostella vectensis]
Length = 700
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 14 KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
KG +GFI E G ++F H S VA L G V + VQ GK SA N++
Sbjct: 644 KGQFGFIGHENEE--GKNLFFHISEVAEN--VELQAGDEVEFFVVQ-KRGGKLSAVNVRK 698
Query: 73 V 73
+
Sbjct: 699 I 699
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +F H S L +L G V + + + K A N+ L+
Sbjct: 13 YGFIQCCEREL---RIFFHYSQYKGD-LDDLRIGDEVEFGVSCDQRSKKPVAVNIVLLTP 68
Query: 76 SS 77
+
Sbjct: 69 GT 70
Score = 41.6 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLKLV 73
G+GFI +F H S + + + G V + ++ + + +A ++++
Sbjct: 307 GFGFIRCCDRDA---RMFFHFSELVESS-RQIQIGDEVEFSITEDSNSMKRVNAIKVRIL 362
Query: 74 PKSS 77
PK +
Sbjct: 363 PKGT 366
Score = 38.1 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + LT G V + NGK A +K +P+
Sbjct: 144 FGFIERADKVS---EIFFHYSEFLDD-INELTLGDDVEFIIQ--PRNGKEVAMRIKKLPE 197
Query: 76 SS 77
+
Sbjct: 198 GT 199
Score = 33.5 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 14 KGYGFITPEGSTES-------GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
K YGF+ +VF H S L G + Y GK S
Sbjct: 465 KRYGFVATLKEHYGFLETSDHDKEVFFHYSEWNDDPSK-LELGDEIEYSLKF--KGGKVS 521
Query: 67 AENLKLVPKSS 77
AE L +PK +
Sbjct: 522 AEGLNKLPKGT 532
>gi|326933723|ref|XP_003212950.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1
[Meleagris gallopavo]
Length = 796
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 197 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 250
Query: 76 SS 77
+
Sbjct: 251 GT 252
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+GFI E +F H V G+ L G V + + N GK SA N+
Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNV 733
Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 37.3 bits (86), Expect = 0.74, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+GFI ++F H S + +L G V Y + K SAE +
Sbjct: 528 FGFIETANH---DKEIFFHYSEYCGD-IDSLELGDTVEYSLSKG-KGNKVSAEKVNK 579
>gi|262380474|ref|ZP_06073628.1| conserved hypothetical protein [Acinetobacter radioresistens
SH164]
gi|262297920|gb|EEY85835.1| conserved hypothetical protein [Acinetobacter radioresistens
SH164]
Length = 206
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P + VFLH A G + G + Y V
Sbjct: 2 MRDQGRLVEWFD-EKGYGFIQPNEPDKG--RVFLHIKDFARPGPRPII-GCALEY-LVIL 56
Query: 60 DANGKYSAENLKLVPKS 76
DA G+Y A+ + + +
Sbjct: 57 DAQGRYRAQQVTYLTAA 73
>gi|255320259|ref|ZP_05361444.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
gi|255302698|gb|EET81930.1| cold-shock DNA-binding domain protein [Acinetobacter
radioresistens SK82]
Length = 206
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ +KGYGFI P + VFLH A G + G + Y V
Sbjct: 2 MRDQGRLVEWFD-EKGYGFIQPNEPDKG--RVFLHIKDFARPGPRPII-GCALEY-LVIL 56
Query: 60 DANGKYSAENLKLVPKS 76
DA G+Y A+ + + +
Sbjct: 57 DAQGRYRAQQVTYLTAA 73
>gi|295096004|emb|CBK85094.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 46
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
G +KW+ DKG+GFI+P DVF+H SA+
Sbjct: 7 GLVKWFKEDKGFGFISPVD---GSKDVFVHFSALQGENFKT 44
>gi|327271519|ref|XP_003220535.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
[Anolis carolinensis]
Length = 812
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 213 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 266
Query: 76 SS 77
+
Sbjct: 267 GT 268
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 699 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVSE 754
Query: 76 SS 77
+
Sbjct: 755 GA 756
Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 84 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAIKLVKIKT 139
Query: 76 SS 77
+
Sbjct: 140 ET 141
Score = 33.9 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
G I E G+ + + A G + G V + + G +A +++++
Sbjct: 471 GIIAYEDC---GEKLTIPYQAKDVEGSTSPQIGDKVEFTVCEVKRTGLQTATSVRML 524
Score = 33.5 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
F+ P+ D L EG V ++ + + A N++++P
Sbjct: 307 FVIPKELPFGDKDTKSKV---------TLLEGDHVRFNISTDRRDKLERATNIEVLP 354
>gi|126734566|ref|ZP_01750312.1| cold shock protein [Roseobacter sp. CCS2]
gi|126715121|gb|EBA11986.1| cold shock protein [Roseobacter sp. CCS2]
Length = 151
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+KW++P KGYGF+ G +D+F+ + + + L +L G + + +
Sbjct: 88 RVKWFDPSKGYGFVNAFGC---AEDIFVGAATLRKSMLGDLQSGDALCVQIAETEGRK 142
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
KW++ +G+GF+ +G D LH++ + G ++ EG V +
Sbjct: 2 KWFDAYRGFGFVVIDGIET---DFLLHQNILHGFGRTSIAEGSSVEF 45
>gi|4689156|gb|AAD27787.1|AF077054_1 unr protein [Homo sapiens]
Length = 770
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVAPDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 657 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 712
Query: 76 SS 77
Sbjct: 713 GP 714
Score = 38.1 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKT 92
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 429 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 485
Query: 77 SN 78
SN
Sbjct: 486 SN 487
>gi|330893719|gb|EGH26380.1| cold shock domain-containing protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 48
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
+SGDD+F+H A+ S G +L EGQ VT+ VQ A+ ++
Sbjct: 2 QSGDDLFVHFKAIESDGFKSLKEGQKVTFVAVQGQKG--MQADEVQ 45
>gi|84387020|ref|ZP_00990043.1| predicted membrane protein [Vibrio splendidus 12B01]
gi|84378095|gb|EAP94955.1| predicted membrane protein [Vibrio splendidus 12B01]
Length = 194
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDAN 62
+G I +N DKGYGFI+ G VF+H S+V ++ L + V ++ ++
Sbjct: 2 KGKIIEWNDDKGYGFISSLGGELK---VFIHASSVKNSRRRPALYDN--VMFEVKEDSK- 55
Query: 63 GKYSAENLKL 72
G+++A+N+ +
Sbjct: 56 GRFNAQNVVI 65
>gi|325279878|ref|YP_004252420.1| Cold-shock protein DNA-binding protein [Odoribacter splanchnicus
DSM 20712]
gi|324311687|gb|ADY32240.1| Cold-shock protein DNA-binding protein [Odoribacter splanchnicus
DSM 20712]
Length = 150
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G ++++N KGYGFI + F H S L L E +V +D +
Sbjct: 85 KGRVEYFNVSKGYGFIK---DLSGTEKYFFHVS----NALSELVENAIVIFDLERGKRG- 136
Query: 64 KYSAENLKLVPKSSN 78
+A N+ + ++++
Sbjct: 137 -MNAINICISERTAD 150
>gi|209736846|gb|ACI69292.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
gi|303658085|gb|ADM15905.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
Length = 194
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQ 50
G++KW+N GYGFI + +DVF+H++A+ L ++ +G+
Sbjct: 41 GTVKWFNVRNGYGFINRNDTK---EDVFVHQTAIKKNNPKKYLRSVGDGE 87
>gi|312379713|gb|EFR25904.1| hypothetical protein AND_08352 [Anopheles darlingi]
Length = 169
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 12 PDKGYGFITPEGS--------------------TESGDDVFLHRSAVASAGLFNLTEGQL 51
P KG+GFITP+ + G + +S + G +L E +
Sbjct: 47 PKKGWGFITPDDGGQEVFVHQVHCRLSIEFPSASTDGYLFSVLQSVIQMGGFRSLGENEE 106
Query: 52 VTYDYVQNDANGKYSAENL 70
V ++ Y A N+
Sbjct: 107 VEFESKLTGKG--YEATNV 123
>gi|288575353|ref|ZP_05976785.2| cold-shock domain protein [Neisseria mucosa ATCC 25996]
gi|288567902|gb|EFC89462.1| cold-shock domain protein [Neisseria mucosa ATCC 25996]
Length = 429
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+I ++ KGYGFI +++ +F H SA GQ V++ + +
Sbjct: 215 GTITTWDDAKGYGFIRFGDESQN---IFFHISAYHYNTCR-PQTGQRVSFYCNRPIEGNR 270
Query: 65 YSAENLKLVPKSS 77
A + + S
Sbjct: 271 QQAIKVVRLGDES 283
>gi|77360541|ref|YP_340116.1| cold shock DNA-binding domain-containing protein
[Pseudoalteromonas haloplanktis TAC125]
gi|76875452|emb|CAI86673.1| putative cold-shock DNA-binding domain [Pseudoalteromonas
haloplanktis TAC125]
Length = 203
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+++G + +N ++GYGFI S+ D F+H S++ G + ++ D
Sbjct: 1 MNKGLLTSWNDNRGYGFIK---SSSVAHDTFIHISSLKHMSRK-PKVGDTIYFEVA-TDP 55
Query: 62 NGKYSAENLKL 72
NGK A N ++
Sbjct: 56 NGKSKAVNCRI 66
>gi|326933725|ref|XP_003212951.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
[Meleagris gallopavo]
Length = 765
Score = 48.1 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LEALQPGDDVEFTIK--DRNGKEVATDVRLLPQ 219
Query: 76 SS 77
+
Sbjct: 220 GT 221
Score = 41.2 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+GFI E +F H V G+ L G V + + N GK SA N+
Sbjct: 652 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNV 702
Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 36.9 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+GFI ++F H S + +L G V Y + K SAE +
Sbjct: 497 FGFIETANH---DKEIFFHYSEYCGD-IDSLELGDTVEYSLSKG-KGNKVSAEKVNK 548
>gi|331652013|ref|ZP_08353032.1| conserved domain protein [Escherichia coli M718]
gi|331050291|gb|EGI22349.1| conserved domain protein [Escherichia coli M718]
Length = 70
Score = 48.1 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA L G V + V
Sbjct: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRYAEVLIPGLRVEFCRVNGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|283780224|ref|YP_003370979.1| cold-shock DNA-binding domain-containing protein [Pirellula
staleyi DSM 6068]
gi|283438677|gb|ADB17119.1| cold-shock DNA-binding domain protein [Pirellula staleyi DSM
6068]
Length = 139
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IK + ++G+GFI + G DV+ H + V + Q V Y+ + D
Sbjct: 1 MQYGIIKSVSFERGFGFI----RQQRGLDVYFHATVVVDQAFERIQPDQPVKYELEKRDR 56
Query: 62 N-------GKYSAENLKLVPKSS 77
+ A ++L+ +
Sbjct: 57 DAPKDPREKGPRAIKVELIDRVP 79
>gi|305666897|ref|YP_003863184.1| cold shock protein DNA-binding protein [Maribacter sp. HTCC2170]
gi|88709122|gb|EAR01356.1| cold shock protein, putative DNA-binding protein [Maribacter sp.
HTCC2170]
Length = 151
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + +Y+ KG+GFI + F H S + + + E V+++ +
Sbjct: 91 NGKVSFYDSSKGFGFII---DSVDQQKYFTHVSGL----IDEIVENDTVSFELEKGMRG- 142
Query: 64 KYSAENLKLV 73
+A +K +
Sbjct: 143 -MNAVRVKKI 151
>gi|326530806|dbj|BAK01201.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 149
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+RG IK + +KG+GFI P+G + VFLH S + EG +V++
Sbjct: 65 YRGVIKNFCRNKGHGFIQPDG---EAEPVFLHISDIEGEWCP--KEGDVVSFKKALMPPK 119
Query: 63 -GKYSAENLKLV 73
KY A ++ V
Sbjct: 120 MQKYQAVHVHFV 131
>gi|308802462|ref|XP_003078544.1| unnamed protein product [Ostreococcus tauri]
gi|116056997|emb|CAL51424.1| unnamed protein product [Ostreococcus tauri]
Length = 480
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
GYGFI D+F H S +A + GQ V + + G+ A +++
Sbjct: 158 KSGYGFIK---CCSRSKDLFFHFSELAEDA-DSAKPGQEVRFVATEEPRRGQLVATSVRY 213
Query: 73 VPKSS 77
PK S
Sbjct: 214 APKGS 218
Score = 34.6 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 1 MVHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G + D YGF+ + T F+H + + G L G + Y
Sbjct: 312 MRFTGKVTSTKSDGLYGFVEHVDQGTGEVGKAFVHGAEI--EGQARLNVGDELEYALQAG 369
Query: 60 DANGKYSAENLKLVPKSS 77
+ +Y+A+ +K+V +
Sbjct: 370 RKSDEYTAKRVKIVVAAP 387
>gi|5441543|emb|CAB46826.1| DNA binding protein [Canis lupus familiaris]
Length = 96
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYS 66
N GYGFI + +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 1 NVRNGYGFINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKG--AE 55
Query: 67 AENLK 71
A N+
Sbjct: 56 AANVT 60
>gi|300176002|emb|CBK22219.2| unnamed protein product [Blastocystis hominis]
Length = 126
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFN---LTEGQLVTYDYVQN 59
+G +KWY+ GYGFI+ T D F+H++ + S L + V +
Sbjct: 22 KGVVKWYDGYMGYGFISTLDETP--VDYFVHKTQIYSLDKFPRTPILFNKEEVEFAVCDT 79
Query: 60 DANGKYSAENLKL 72
+ +AE + L
Sbjct: 80 EKGK--AAEEVSL 90
>gi|242007282|ref|XP_002424470.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212507888|gb|EEB11732.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 994
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF++ G ++F + V + L G V ++ V N NGK SA N
Sbjct: 878 DAVKGHFGFLSYAVE--DGKNLFFRMTEVKDGAM--LQPGDTVEFNLVTNHRNGKTSACN 933
Query: 70 LKLVPK 75
+ V K
Sbjct: 934 VTKVSK 939
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 179 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMSYDRRTGKPIASAVSKIAP 234
Query: 76 S 76
Sbjct: 235 E 235
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 20 TPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
P D S + G G V ++ VQ N K+ A ++K+V
Sbjct: 603 EPGIINYEQGDTKKSISYCHNDGDDTKMSPRLGDKVEFNVVQVKRNKKFLAVDIKVVSS 661
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENLKLV 73
G+GFI +VF H S L Q V Y+ ++ + SAEN+KL+
Sbjct: 704 GFGFIETISH---DQEVFFHFSNFDGDPEK-LELCQEVMYNLGSRSTSGSCMSAENVKLL 759
Query: 74 PKSS 77
PK +
Sbjct: 760 PKGT 763
Score = 34.3 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN------DANGKYSAE 68
G+GFI VF + + + V + VQ+ + N K SA
Sbjct: 499 GFGFIKCADRDMK---VFFNTNEIL-DVEKEAQVDDEVEFTIVQDTLSSYSNPNNKQSAI 554
Query: 69 NLKLVPKSS 77
+KL+ +
Sbjct: 555 RIKLLDSGT 563
Score = 33.9 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
+V + G F L G V + + + A N+ L+ +S
Sbjct: 430 PDHSEVEIPFGEKDQCGDFTLRHGDWVQFRIATDRRDQLQRAVNISLMEES 480
>gi|207738540|ref|YP_002256933.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
gi|206591908|emb|CAQ58814.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
Length = 137
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48
+ G++KW+N KG+GF SG + L +
Sbjct: 43 MATGTVKWFNETKGFGF------MHSGRRRRRSVRTLLGNSGRRLQD 83
>gi|221106282|ref|XP_002168685.1| PREDICTED: similar to RNA-binding protein pippin, partial [Hydra
magnipapillata]
Length = 93
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
G++ + +KG+GF+ P+ + VFLH S + + + G V + +
Sbjct: 11 NGTVVSFCREKGHGFVKPDNEERN---VFLHISDIEDEYV--VQTGDRVEFRTIPMPPKC 65
Query: 63 GKYSAENLKLVP 74
+ A ++L+
Sbjct: 66 VERMAVEVRLIE 77
>gi|229085309|ref|ZP_04217551.1| Cold-shock DNA-binding domain protein [Bacillus cereus Rock3-44]
gi|228698028|gb|EEL50771.1| Cold-shock DNA-binding domain protein [Bacillus cereus Rock3-44]
Length = 83
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA------GLFNLTEGQLVTYDY 56
+ G ++W+ ++GYG I + + E + VF+H S++A + L++GQ V++D
Sbjct: 5 YEGIVEWFKKEEGYGSILLDRNKE--EPVFVHFSSIAPDLDRFPDNVRYLSKGQRVSFDL 62
Query: 57 VQNDANGKYS--AENLKLVP 74
++ + S A N+ ++
Sbjct: 63 IEIPGLSEQSKTASNVVILS 82
>gi|260825712|ref|XP_002607810.1| hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae]
gi|229293159|gb|EEN63820.1| hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae]
Length = 687
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 4 RGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RGS+ + KG +GFI E +F H S V +L+ G V + V N +
Sbjct: 550 RGSV---DTIKGQFGFINYEVG--DNKKLFFHLSEVHDG--SDLSPGDKVEFVVVCNQKS 602
Query: 63 GKYSAENLKLV 73
GKYSA ++K V
Sbjct: 603 GKYSACSVKKV 613
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLK 71
+G+GFI +F H S + L G V + V + ++ + A +K
Sbjct: 236 KEGFGFIKCVDRDA---RMFFHFSELLDP--VELHIGDEVEFTVVPDPSSAQRNHAIRIK 290
Query: 72 LVPKSS 77
+PK +
Sbjct: 291 PLPKGT 296
>gi|270263682|ref|ZP_06191951.1| cold-shock DNA-binding domain-containing protein [Serratia
odorifera 4Rx13]
gi|270042566|gb|EFA15661.1| cold-shock DNA-binding domain-containing protein [Serratia
odorifera 4Rx13]
Length = 163
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G I + DKG+GFIT E + + + + VT++ N
Sbjct: 3 MMMNGKITTFFEDKGFGFITDENGEN------RYFHVIKVQNPELIKKNAAVTFEPTNNT 56
Query: 61 ANGKYSAENLK 71
A ++
Sbjct: 57 KGPSAYAVKVQ 67
>gi|262376761|ref|ZP_06069989.1| cold shock/excaliber domain-containing protein CspD
[Acinetobacter lwoffii SH145]
gi|262308471|gb|EEY89606.1| cold shock/excaliber domain-containing protein CspD
[Acinetobacter lwoffii SH145]
Length = 240
Score = 47.7 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G IK YN D+G+GFI EG + D+F H + + G+ + + V++
Sbjct: 1 MFQEGKIKTYNEDRGFGFIQIEGQS---KDLFFHVKDFPNKNVP-PRIGEKLKFLIVED- 55
Query: 61 ANGKYSAENLKLVP 74
NGK+ A+++ +
Sbjct: 56 -NGKFKADHIVRLD 68
>gi|294498585|ref|YP_003562285.1| cold shock protein [Bacillus megaterium QM B1551]
gi|294348522|gb|ADE68851.1| cold shock protein [Bacillus megaterium QM B1551]
Length = 60
Score = 47.7 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
K Y+ +KG+GFI P+ +++F+H S+V ++ +L GQ V+Y ++ + A
Sbjct: 2 KCYDKEKGFGFILPDN---GLEELFVHFSSVYNSN--SLKVGQEVSY--IEYKGHKGPQA 54
Query: 68 ENLKLV 73
E + L+
Sbjct: 55 EYVMLL 60
>gi|118380115|ref|XP_001023222.1| 'Cold-shock' DNA-binding domain containing protein [Tetrahymena
thermophila]
gi|89304989|gb|EAS02977.1| 'Cold-shock' DNA-binding domain containing protein [Tetrahymena
thermophila SB210]
Length = 725
Score = 47.7 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59
GS+K+++ +K YGFI + D+F+H + AG L + +G ++ + +
Sbjct: 615 GSLKFFDENKNYGFIVMDD---DNRDIFVHYDDLQKAGITKEFLKSSKQGNVIRFSFSCM 671
Query: 60 DANGKY----SAENLKLVP 74
GKY A L+++P
Sbjct: 672 QYIGKYKQSKKAVELQVMP 690
>gi|157369425|ref|YP_001477414.1| cold-shock DNA-binding domain-containing protein [Serratia
proteamaculans 568]
gi|157321189|gb|ABV40286.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
568]
Length = 163
Score = 47.7 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G I + DKG+GFIT E + + + + VT++ N
Sbjct: 3 MMMNGKITTFFEDKGFGFITDENGEN------RYFHVIKVQNPELIKKNAAVTFEPTNNT 56
Query: 61 ANGKYSAENLKLVPKS 76
SA +K++ S
Sbjct: 57 KG--PSAFAVKVLASS 70
>gi|255013951|ref|ZP_05286077.1| cold shock protein, putative DNA-binding protein [Bacteroides sp.
2_1_7]
gi|262382000|ref|ZP_06075138.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298375436|ref|ZP_06985393.1| cold shock protein [Bacteroides sp. 3_1_19]
gi|301310539|ref|ZP_07216478.1| cold shock protein [Bacteroides sp. 20_3]
gi|262297177|gb|EEY85107.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298267936|gb|EFI09592.1| cold shock protein [Bacteroides sp. 3_1_19]
gi|300832113|gb|EFK62744.1| cold shock protein [Bacteroides sp. 20_3]
Length = 148
Score = 47.7 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG + ++N KG+GFI + F H + V ++ +VT+D + D
Sbjct: 86 RGRVDYFNEAKGFGFIR---DLSGTEKYFFHVNNVVDD----ISVNDIVTFDLERGDRG- 137
Query: 64 KYSAENL 70
SA N+
Sbjct: 138 -LSAVNV 143
>gi|150007460|ref|YP_001302203.1| cold shock DNA-binding protein [Parabacteroides distasonis ATCC
8503]
gi|256839709|ref|ZP_05545218.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149935884|gb|ABR42581.1| cold shock protein, putative DNA-binding protein [Parabacteroides
distasonis ATCC 8503]
gi|256738639|gb|EEU51964.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 148
Score = 47.7 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG + ++N KG+GFI + F H + V ++ +VT+D + D
Sbjct: 86 RGRVDYFNEAKGFGFIR---DLSGTEKYFFHVNNVVDD----ISVNDIVTFDLERGDRG- 137
Query: 64 KYSAENL 70
SA N+
Sbjct: 138 -LSAVNV 143
>gi|160888974|ref|ZP_02069977.1| hypothetical protein BACUNI_01394 [Bacteroides uniformis ATCC 8492]
gi|270293902|ref|ZP_06200104.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479261|ref|ZP_07938396.1| cold-shock DNA-binding domain-containing protein [Bacteroides sp.
4_1_36]
gi|156861441|gb|EDO54872.1| hypothetical protein BACUNI_01394 [Bacteroides uniformis ATCC 8492]
gi|270275369|gb|EFA21229.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316904549|gb|EFV26368.1| cold-shock DNA-binding domain-containing protein [Bacteroides sp.
4_1_36]
Length = 165
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG I+++N KG+GFI + F H + V L ++ E +VT+D +
Sbjct: 87 RGRIEFFNESKGFGFIK---DLSGVEKYFFHINNV----LTDIAENNIVTFDLERGLKG- 138
Query: 64 KYSAENLKL 72
+A N+ L
Sbjct: 139 -MNAVNVAL 146
>gi|255066450|ref|ZP_05318305.1| cold shock domain protein [Neisseria sicca ATCC 29256]
gi|255049330|gb|EET44794.1| cold shock domain protein [Neisseria sicca ATCC 29256]
Length = 226
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M + G+I +N ++ +G I E G +VF SA + EGQ V++D V+
Sbjct: 1 MRYYGTITRWNDNRQFGAIREESM---GTEVFAPLSAFTTL-TRPPAEGQRVSFDIVKG- 55
Query: 61 ANGKYSAENL 70
G+ AEN+
Sbjct: 56 RRGRDEAENI 65
>gi|293346846|ref|XP_001067034.2| PREDICTED: lin-28 homolog [Rattus norvegicus]
gi|293358614|ref|XP_233546.4| PREDICTED: lin-28 homolog [Rattus norvegicus]
Length = 196
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 11 NPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
N G+GF++ + DVF+H+S + + G +L EG+ V + + ++
Sbjct: 35 NVRMGFGFLSMTACAGVALDPTMDVFVHQSRLHTEGFRSLKEGEAVEFTFKKSAKG 90
>gi|178847413|pdb|2YTX|A Chain A, Solution Structure Of The Second Cold-Shock Domain Of
The Human Kiaa0885 Protein (Unr Protein)
Length = 97
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S L L G V + D NGK A +++L+P+
Sbjct: 30 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQ 83
Query: 76 SS 77
+
Sbjct: 84 GT 85
>gi|332704849|ref|ZP_08424937.1| Cold-shock protein, DNA-binding [Desulfovibrio africanus str.
Walvis Bay]
gi|332554998|gb|EGJ52042.1| Cold-shock protein, DNA-binding [Desulfovibrio africanus str.
Walvis Bay]
Length = 205
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI T G D++ HR+++ +A L G V Y+ + D A ++++
Sbjct: 132 YGFI----RTVDGQDIYFHRNSLLNANFDTLELGTGVAYEATEGDEG--LQASTVRVIEH 185
Query: 76 SSN 78
++
Sbjct: 186 KTS 188
>gi|163741420|ref|ZP_02148811.1| Cold-shock protein [Phaeobacter gallaeciensis 2.10]
gi|161385154|gb|EDQ09532.1| Cold-shock protein [Phaeobacter gallaeciensis 2.10]
Length = 42
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+F+H SA+ AGL L + Q VT+D + +G+ SA NL L
Sbjct: 1 MFVHISALERAGLTTLNDDQKVTFDI-EAGRDGRESAANLAL 41
>gi|222874693|gb|EEF11824.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
+G L EGQ V ++ VQ A N++
Sbjct: 1 MSGFKTLKEGQRVVFEIVQGPKGK--QATNIQ 30
>gi|257053888|ref|YP_003131721.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
gi|256692651|gb|ACV12988.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
Length = 64
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI + + DDVF H V G +L EGQ V ++ + +
Sbjct: 1 MATGTVDFFNDTGGYGFIETDDA---DDDVFFHMEDV---GGPDLEEGQEVEFEIEEAEK 54
Query: 62 NGKYSAENLKLV 73
+ A NL +
Sbjct: 55 GPR--ATNLTRL 64
>gi|74228917|dbj|BAE21931.1| unnamed protein product [Mus musculus]
Length = 138
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 15 GYGFITPEGSTESG----DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+GFI+ + DVF+H+S + G +L EG+ V + + ++
Sbjct: 2 GFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKG 53
>gi|16760655|ref|NP_456272.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16764598|ref|NP_460213.1| cold shock-like protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29141586|ref|NP_804928.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|161614377|ref|YP_001588342.1| hypothetical protein SPAB_02126 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|200390149|ref|ZP_03216760.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|207857251|ref|YP_002243902.1| cold shock protein CspH [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213053010|ref|ZP_03345888.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213418364|ref|ZP_03351430.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213580471|ref|ZP_03362297.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213609947|ref|ZP_03369773.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646143|ref|ZP_03376196.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855314|ref|ZP_03383554.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|238910937|ref|ZP_04654774.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289803991|ref|ZP_06534620.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|60391952|sp|P0A1D9|CSPH_SALTY RecName: Full=Cold shock-like protein CspH
gi|60391953|sp|P0A1E0|CSPH_SALTI RecName: Full=Cold shock-like protein CspH
gi|25296114|pir||AC0718 probable cold shock protein cspH [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|6180041|gb|AAF05759.1|AF191799_1 major cold shock protein CspH [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|2228815|gb|AAB61944.1| major cold-shock protein CspH [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16419762|gb|AAL20172.1| homology with cold shock proteins [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16502951|emb|CAD02116.1| putative cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137213|gb|AAO68777.1| putative cold shock protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161363741|gb|ABX67509.1| hypothetical protein SPAB_02126 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|199602594|gb|EDZ01140.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|206709054|emb|CAR33385.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261246455|emb|CBG24265.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993093|gb|ACY87978.1| cold shock-like protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157784|emb|CBW17277.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312912232|dbj|BAJ36206.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320086288|emb|CBY96062.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322616634|gb|EFY13543.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322619851|gb|EFY16725.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622419|gb|EFY19264.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627943|gb|EFY24733.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632959|gb|EFY29702.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636795|gb|EFY33498.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641394|gb|EFY38033.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645169|gb|EFY41698.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322650110|gb|EFY46524.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655684|gb|EFY51986.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660008|gb|EFY56247.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665424|gb|EFY61612.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667598|gb|EFY63759.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673608|gb|EFY69710.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322677534|gb|EFY73598.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322679801|gb|EFY75840.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687274|gb|EFY83246.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323129513|gb|ADX16943.1| putative cold shock protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323192391|gb|EFZ77621.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199469|gb|EFZ84562.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203657|gb|EFZ88679.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208800|gb|EFZ93738.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323214140|gb|EFZ98900.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217776|gb|EGA02491.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323218913|gb|EGA03424.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224984|gb|EGA09240.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229579|gb|EGA13702.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323232802|gb|EGA16898.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240160|gb|EGA24204.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242853|gb|EGA26874.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247785|gb|EGA31724.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254331|gb|EGA38148.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256109|gb|EGA39846.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259431|gb|EGA43067.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267027|gb|EGA50512.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272131|gb|EGA55545.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|332988135|gb|AEF07118.1| cold shock-like protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 70
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV +H SA L G V + +
Sbjct: 6 TGIVKTFDCKSGKGLITPSD---GRKDVQVHISACRQHETEALIPGIRVEFCRINGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|145542504|ref|XP_001456939.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424753|emb|CAK89542.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD-- 55
+ G +K+++ K YGFI + D+F+H + AG L G + +
Sbjct: 341 YTGRLKFFDEQKNYGFIVMDEDKS---DIFVHLDDLQKAGVTKEVLKTAKLGSQIRFQFN 397
Query: 56 --YVQNDANGKYSAENLKLVP 74
A LKL+
Sbjct: 398 CMVYVGKYKRSRKAVELKLLS 418
>gi|75910292|ref|YP_324588.1| cold-shock DNA-binding protein family protein [Anabaena variabilis
ATCC 29413]
gi|75704017|gb|ABA23693.1| cold-shock DNA-binding protein family [Anabaena variabilis ATCC
29413]
Length = 188
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G I D+GYGFI T G +V+ HR+++ + L G + + + D
Sbjct: 117 PHGRITSLFSDEGYGFIE----TPDGSEVYFHRNSLFNGDFEQLQVGDEIRFAQEEGDKG 172
Query: 63 GKYSAENLKLVPK 75
A ++L+ K
Sbjct: 173 --PQASTVRLIGK 183
>gi|323452578|gb|EGB08452.1| hypothetical protein AURANDRAFT_64076 [Aureococcus anophagefferens]
Length = 1465
Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ W+N K +GF+ P+G G DVF+H S V L G V YD G+
Sbjct: 1314 GTVLWFN--KSHGFVQPDG---GGADVFVHLSDVCG----VLKAGDRVLYDVT--RFKGR 1362
Query: 65 YSAENL 70
++
Sbjct: 1363 DKCVDV 1368
>gi|229595426|ref|XP_001017681.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila]
gi|225566130|gb|EAR97436.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila
SB210]
Length = 801
Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEG---QLVTYDYV 57
++G++K+++ DK YGFI + S D+F+H + AG+ L + + + + +
Sbjct: 556 YKGTLKFFDQDKNYGFIVEDESRT---DIFVHFDDLQKAGIHKGILMDHKHSKSIRFQFS 612
Query: 58 QNDANGKYS----AENLKLVPKSS 77
D GKY A +L+L+ +
Sbjct: 613 MMDYIGKYQNSRKAVDLQLLSDTP 636
>gi|313203399|ref|YP_004042056.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes
WB4]
gi|312442715|gb|ADQ79071.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes
WB4]
Length = 149
Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + +Y+ KG+GFI G+ + F+H ++ L + EG LV ++ Q
Sbjct: 88 NGRVDFYDDSKGFGFIKETGTQ---EKFFVHVNSC----LQAIKEGDLVDFELEQGKKG- 139
Query: 64 KYSAENLKL 72
+A +K
Sbjct: 140 -LNAVRVKK 147
>gi|296389633|ref|ZP_06879108.1| hypothetical protein PaerPAb_15856 [Pseudomonas aeruginosa PAb1]
Length = 84
Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
+WY+ KG+GFI P G++VFLH SA +G V + DA G+ A
Sbjct: 4 RWYDD-KGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRA 56
Query: 68 ENLKL 72
E +L
Sbjct: 57 ERARL 61
>gi|262373361|ref|ZP_06066640.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
gi|262313386|gb|EEY94471.1| cold shock domain-containing protein CspD [Acinetobacter junii
SH205]
Length = 97
Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G +K YNPDKG+GFI + D+F H S ++ + V + ++N N
Sbjct: 6 YQGKVKQYNPDKGFGFIA-----TTEGDIFFHISDFPASE-GEPKRNEKVKFVALEN--N 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ V +
Sbjct: 58 GKFKAVQIERVDPNP 72
>gi|332884046|gb|EGK04326.1| hypothetical protein HMPREF9456_01354 [Dysgonomonas mossii DSM
22836]
Length = 151
Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G ++++N DKGYGFI GST + F H S+ L + EG +VT++ +
Sbjct: 85 NGRVEYFNQDKGYGFIKHTGST---EKYFFHVSST----LVPIEEGNMVTFELERGQKG- 136
Query: 64 KYSAENLKL 72
+A + L
Sbjct: 137 -MNAVRITL 144
>gi|56758052|gb|AAW27166.1| SJCHGC09481 protein [Schistosoma japonicum]
gi|226488138|emb|CAX75734.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489182|emb|CAX75735.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489184|emb|CAX75736.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489186|emb|CAX75737.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
gi|226489188|emb|CAX75738.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
heat-stable protein of 24 kDa) [Schistosoma japonicum]
Length = 117
Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-YVQNDANG 63
G I + KG+GFI P+ + +L G + EG +V Y + N
Sbjct: 39 GRIVSFCRKKGHGFIKPDNGGD-----YLFVHVFDIDGEYVPIEGDVVEYRKMLIPPKNE 93
Query: 64 KYSAENLKLV 73
KY A ++++V
Sbjct: 94 KYQAVHVRIV 103
>gi|189465919|ref|ZP_03014704.1| hypothetical protein BACINT_02282 [Bacteroides intestinalis DSM
17393]
gi|189434183|gb|EDV03168.1| hypothetical protein BACINT_02282 [Bacteroides intestinalis DSM
17393]
Length = 149
Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I+ +N +GYGFI GS G+ F H ++ +TEG VT++ +
Sbjct: 87 NGRIEHFNVSRGYGFIKDLGS---GEKYFFHITSAPE----GITEGDNVTFEIERGTRG- 138
Query: 64 KYSAENLKLV 73
+A + ++
Sbjct: 139 -MNAVRISII 147
>gi|119946476|ref|YP_944156.1| hypothetical protein Ping_2851 [Psychromonas ingrahamii 37]
gi|119865080|gb|ABM04557.1| hypothetical protein DUF1294 [Psychromonas ingrahamii 37]
Length = 207
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + +N DKG+GF+ P G G+ F+H A S L + G ++ Y+ V++
Sbjct: 1 MKLQGKVTNWNDDKGFGFVDPNG---GGNRAFIHIKAFTSGSLRPVN-GDIIIYELVRDQ 56
Query: 61 ANGKYSAENLK 71
N +Y A+ +K
Sbjct: 57 -NNRYQADKIK 66
>gi|126640824|ref|YP_001083808.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|184157043|ref|YP_001845382.1| putative cold shock protein [Acinetobacter baumannii ACICU]
gi|332872618|ref|ZP_08440586.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6014059]
gi|126386708|gb|ABO11206.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
gi|183208637|gb|ACC56035.1| putative cold shock protein [Acinetobacter baumannii ACICU]
gi|322506942|gb|ADX02396.1| Putative cold shock protein [Acinetobacter baumannii 1656-2]
gi|323516809|gb|ADX91190.1| putative cold shock protein [Acinetobacter baumannii TCDC-AB0715]
gi|332739147|gb|EGJ70006.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6014059]
Length = 97
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +K YN DKG+GFI+ + D+F H S ++ + V + D
Sbjct: 6 YTGRVKQYNADKGFGFIS-----TTEGDIFFHISDFPASE-GEPKRNEKVRFLAA--DNR 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ + +
Sbjct: 58 GKFKAVKIERIDPNP 72
>gi|224827101|ref|ZP_03700198.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
gi|224600767|gb|EEG06953.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
Length = 202
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + ++ +G+GFITP G G +VF+H S LV+Y ++
Sbjct: 1 MRFQGRLTRWDDARGFGFITPNG---GGAEVFVHISDF-GTVPRRPAAHDLVSYRQDYDE 56
Query: 61 ANGKYSAENLKLV 73
+ A KLV
Sbjct: 57 RR-RPRAVEAKLV 68
>gi|330867693|gb|EGH02402.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330876782|gb|EGH10931.1| cold shock protein CapA [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
gi|330883225|gb|EGH17374.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330958900|gb|EGH59160.1| cold shock protein CapA [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330967300|gb|EGH67560.1| cold shock protein CapA [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330989243|gb|EGH87346.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331010504|gb|EGH90560.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 46
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
GDD+F+H A+ S G +L EGQ V++ + AE +++
Sbjct: 2 GGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQKG--MQAEQVRV 45
>gi|193480019|gb|ACF18026.1| cold shock protein [uncultured bacterium]
Length = 40
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
VF+H A+ G +LTEGQ V Y V+ AE++
Sbjct: 3 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 40
>gi|322798696|gb|EFZ20294.1| hypothetical protein SINV_03090 [Solenopsis invicta]
Length = 881
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H S V + L G V + V N GK SA +
Sbjct: 766 DAMKGPFGFLAYEVDE--GKKLFFHASEVQDHVM--LQPGDQVEFVLVTNQRTGKSSACS 821
Query: 70 LKLVPKS 76
+ + +
Sbjct: 822 VTRLSDA 828
Score = 41.6 bits (97), Expect = 0.040, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S S L G V + +Q NGK A N+ +P
Sbjct: 281 FGFIERADVV---KEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 334
Query: 76 SS 77
S
Sbjct: 335 GS 336
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 131 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 186
Query: 76 SS 77
+
Sbjct: 187 VA 188
Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAENL 70
G+GFI +F H + V ++ G V + VQ+ +N + SA L
Sbjct: 446 GFGFIRCVERE---PRLFFHFNEVLDVD-REISVGDEVEFTVVQDPSSSFSNTRQSAIRL 501
Query: 71 KLVPKSS 77
K +P +
Sbjct: 502 KHLPTGT 508
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ----NDANGKYSAENL 70
G+GFI ++F H S L G + + G +A+++
Sbjct: 612 GFGFIETVNH---DREIFFHYSNFEGDA-STLELGADIECTISNMSNGRGSGGCVAADHV 667
Query: 71 KLVPKSS 77
KLVP+ S
Sbjct: 668 KLVPRGS 674
Score = 33.5 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 21 PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G+ FL + G L G V++ N G A N++L +
Sbjct: 211 RISYENRGECFFLPYTKDDVEGNVTLRAGDKVSFQIATNQR-GNLGACNVRLENPA 265
>gi|145504068|ref|XP_001438006.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405167|emb|CAK70609.1| unnamed protein product [Paramecium tetraurelia]
Length = 433
Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD-- 55
+ G +K+++ K YGFI + D+F+H + AG L +G L+ +
Sbjct: 345 YTGRLKFFDEQKNYGFIVMDEDKS---DIFVHLDDLQKAGVTKEVLKTSKQGLLLRFQFN 401
Query: 56 --YVQNDANGKYSAENLKLV 73
A LKL+
Sbjct: 402 CMVYVGKYKKSRKAVELKLL 421
>gi|328707104|ref|XP_003243299.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
[Acyrthosiphon pisum]
Length = 944
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+T E G +F H S V G+ L +G LV + V N +GK S N
Sbjct: 819 DAIKGLFGFLTHEVE--GGKKLFFHTSEVT-DGIK-LYQGDLVEFVLVVNQRSGKSSGCN 874
Query: 70 LKLVPKSSN 78
+ + + N
Sbjct: 875 VTKISSAEN 883
Score = 40.4 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 151 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 206
Query: 76 S 76
Sbjct: 207 E 207
Score = 37.3 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---NDANGKYSAENLK 71
G+GFI +VF + + + +L G V Y + SAEN++
Sbjct: 663 GFGFIETIALDS---EVFFRYANL-NEPSASLELGMEVEYTLSTRNTGNGGSCASAENVR 718
Query: 72 LVPKSS 77
++P S
Sbjct: 719 ILPPGS 724
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+G+I ++ + + L G V + +Q +GK A N++ +P
Sbjct: 305 FGYIERADIV---KEISFPFTEFKDSS-KPLQLGDDVEF-IIQT-RSGKEVACNIERLPP 358
Query: 76 SS 77
S
Sbjct: 359 GS 360
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
+V + G F L G V + + + A N+ L+P+S
Sbjct: 405 EVEVSFGEKDQQGDFTLRHGDWVEFRIATDRRDQLKRATNISLLPES 451
Score = 34.6 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAE 68
+G+GF+ S E ++ + V L V + Q+ N + SA
Sbjct: 468 KQGFGFLR---SVEREPKIYFTFNEVL-DVQRKLECNDEVEFTVAQDPSSSFGNSRQSAI 523
Query: 69 NLKLVPKSS 77
+K +P+ S
Sbjct: 524 RIKHLPRGS 532
>gi|160883548|ref|ZP_02064551.1| hypothetical protein BACOVA_01520 [Bacteroides ovatus ATCC 8483]
gi|156110961|gb|EDO12706.1| hypothetical protein BACOVA_01520 [Bacteroides ovatus ATCC 8483]
Length = 180
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V + E +VT+D +
Sbjct: 106 RGRVEFFNESRGFGFIK---DLSGVEKYFFHVNNVIGN----IAENNIVTFDLERGVKG- 157
Query: 64 KYSAENLKLVPKSSN 78
+A N+ L KS++
Sbjct: 158 -MNAINISLENKSTS 171
>gi|149370357|ref|ZP_01890046.1| cold shock protein [unidentified eubacterium SCB49]
gi|149355908|gb|EDM44465.1| cold shock protein [unidentified eubacterium SCB49]
Length = 153
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ +Y+ KG+GFI + F H S + + +TEG LV+++ +
Sbjct: 93 GTVDFYDSSKGFGFII---DGKDKQKYFCHVSGL----IDEITEGNLVSFELEKGQRG-- 143
Query: 65 YSAENLKL 72
+A +KL
Sbjct: 144 MNAVKVKL 151
>gi|91079915|ref|XP_967163.1| PREDICTED: similar to AGAP004937-PA [Tribolium castaneum]
gi|270003264|gb|EEZ99711.1| hypothetical protein TcasGA2_TC002472 [Tribolium castaneum]
Length = 910
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLV 73
G+GFI +T+ +VF H S +L GQ V Y+ +G SAEN+K++
Sbjct: 644 GFGFIE---TTQHDKEVFFHFSNFEGEP-NSLELGQEVEYNLGSRGNSGTCSSAENVKII 699
Query: 74 PKSS 77
PK +
Sbjct: 700 PKGT 703
Score = 40.4 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E G +F H + V NL G V + V N +GK SA +
Sbjct: 795 DAIKGHFGFLAYEVEE--GKKLFFHMTEVKDN--VNLQVGDTVEFVLVTNHRSGKSSACS 850
Query: 70 LKLVPK 75
+ V
Sbjct: 851 VVKVSD 856
Score = 40.4 bits (94), Expect = 0.087, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + NGK A N+ +P
Sbjct: 293 FGFIERADVV---KEIFFHFSEAKTK--EELRLGDDVEFTIQT--RNGKEVACNITRLPS 345
Query: 76 SS 77
+
Sbjct: 346 GT 347
Score = 40.0 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 139 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASAVTKIAP 194
Query: 76 S 76
Sbjct: 195 E 195
>gi|198438072|ref|XP_002131596.1| PREDICTED: similar to LOC495181 protein [Ciona intestinalis]
Length = 163
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H+G ++++ +G+GFI P + S D +F+H S + L G +++Y ++
Sbjct: 75 HQGVCQFFSCSQGHGFIKPTDGS-SDDLIFMHISDIEGD-YVPLY-GDILSYKLTRSPPK 131
Query: 63 -GKYSAENLKLV 73
K+ A +++V
Sbjct: 132 MEKFQAVEVRIV 143
>gi|195360744|gb|ACF95833.1| CSP [uncultured bacterium]
Length = 41
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
VF+H A+ G +LTEGQ V Y V+ AE++
Sbjct: 2 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 39
>gi|115725199|ref|XP_788422.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 266
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G+I + KG+GFI+ + G +FLH S + + G V Y
Sbjct: 54 KKGTIAEFERSKGHGFISSDD---DGSRIFLHISDIEGEYVP--VAGDRVEYRECPIPPK 108
Query: 63 -GKYSAENLKL--VPKSS 77
+ A + L + S
Sbjct: 109 MDQKQAVEVVLTQLEPGS 126
>gi|153873831|ref|ZP_02002279.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS]
gi|152069703|gb|EDN67719.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS]
Length = 225
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G I + DKG+GFI PE + G+ +F H S++ + + G V YD + DA G
Sbjct: 2 KGKILQWKDDKGFGFILPE---KGGEKLFFHISSIKNQS-RHPQVGDAVLYD-SERDAQG 56
Query: 64 KYSAENLKLVPKSS 77
+ A+++ L +S
Sbjct: 57 RLRAKSVVLEGVAS 70
>gi|188026432|ref|ZP_02962051.2| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC
25827]
gi|188019835|gb|EDU57875.1| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC
25827]
Length = 174
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 16 MAMNGTITTWF-EDKGFGFIKDENGDN------RYFHVIKVANPDLIKKNAAVTFEPTTN 68
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 69 NKG--LSAYAVKVIPES 83
>gi|170038774|ref|XP_001847223.1| cold shock domain-containing protein E1 [Culex quinquefasciatus]
gi|167882469|gb|EDS45852.1| cold shock domain-containing protein E1 [Culex quinquefasciatus]
Length = 954
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND--ANGKYSA 67
+ KG +GF+ + E G +F H S V G +L G V + V N NGK SA
Sbjct: 836 DSVKGLFGFL--DFEVEEGKKLFFHMSEVQGGG--SLYPGDSVEFSIVTNQASRNGKTSA 891
Query: 68 ENLKLVPK 75
N+ VP
Sbjct: 892 CNMIKVPD 899
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + +Q GK A N+ +P
Sbjct: 300 FGFIERADVV---KEIFFHFS--ETDNTIELRPGDDVEF-IIQTRNQGKEVACNIARLPP 353
Query: 76 SS 77
S
Sbjct: 354 GS 355
>gi|328707106|ref|XP_001948689.2| PREDICTED: cold shock domain-containing protein E1-like isoform 1
[Acyrthosiphon pisum]
Length = 900
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+T E G +F H S V G+ L +G LV + V N +GK S N
Sbjct: 775 DAIKGLFGFLTHEVE--GGKKLFFHTSEVT-DGIK-LYQGDLVEFVLVVNQRSGKSSGCN 830
Query: 70 LKLVPKSSN 78
+ + + N
Sbjct: 831 VTKISSAEN 839
Score = 40.4 bits (94), Expect = 0.086, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 107 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 162
Query: 76 S 76
Sbjct: 163 E 163
Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---NDANGKYSAENLK 71
G+GFI +VF + + + +L G V Y + SAEN++
Sbjct: 619 GFGFIETIALDS---EVFFRYANL-NEPSASLELGMEVEYTLSTRNTGNGGSCASAENVR 674
Query: 72 LVPKSS 77
++P S
Sbjct: 675 ILPPGS 680
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+G+I ++ + + L G V + +Q +GK A N++ +P
Sbjct: 261 FGYIERADIV---KEISFPFTEFKDSS-KPLQLGDDVEF-IIQT-RSGKEVACNIERLPP 314
Query: 76 SS 77
S
Sbjct: 315 GS 316
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
+V + G F L G V + + + A N+ L+P+S
Sbjct: 361 EVEVSFGEKDQQGDFTLRHGDWVEFRIATDRRDQLKRATNISLLPES 407
Score = 34.6 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAE 68
+G+GF+ S E ++ + V L V + Q+ N + SA
Sbjct: 424 KQGFGFLR---SVEREPKIYFTFNEVL-DVQRKLECNDEVEFTVAQDPSSSFGNSRQSAI 479
Query: 69 NLKLVPKSS 77
+K +P+ S
Sbjct: 480 RIKHLPRGS 488
>gi|326424037|ref|NP_761361.2| Cold shock domain family protein [Vibrio vulnificus CMCP6]
gi|319999414|gb|AAO10888.2| Cold shock domain family protein [Vibrio vulnificus CMCP6]
Length = 161
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G I + ++G+GFI + DVF+H S G G V + N
Sbjct: 8 KGKILRWVDERGFGFIKSDEL---DGDVFVHISKFPQ-GYRRPQVGDHVEFHLANNQ--P 61
Query: 64 KYSAENLKLVPKSS 77
K SA + +L+
Sbjct: 62 KLSAASARLIGVEP 75
>gi|237805445|ref|ZP_04592149.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331026552|gb|EGI06607.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 31
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGST 25
G++KW+N +KG+GFITP+
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQSGD 27
>gi|169797044|ref|YP_001714837.1| putative cold shock protein [Acinetobacter baumannii AYE]
gi|213156550|ref|YP_002318211.1| putative cold shock protein [Acinetobacter baumannii AB0057]
gi|215484505|ref|YP_002326740.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB307-0294]
gi|301347614|ref|ZP_07228355.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB056]
gi|301512491|ref|ZP_07237728.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB058]
gi|301595899|ref|ZP_07240907.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB059]
gi|332852133|ref|ZP_08433960.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013150]
gi|332867532|ref|ZP_08437685.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013113]
gi|169149971|emb|CAM87865.1| putative cold shock protein [Acinetobacter baumannii AYE]
gi|213055710|gb|ACJ40612.1| putative cold shock protein [Acinetobacter baumannii AB0057]
gi|213986360|gb|ACJ56659.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB307-0294]
gi|332729505|gb|EGJ60844.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013150]
gi|332733949|gb|EGJ65094.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
6013113]
Length = 97
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +K YN DKG+GFI+ + D+F H S ++ + V + D
Sbjct: 6 YTGRVKQYNADKGFGFIS-----TTEGDIFFHISDFPASE-GEPKRNEKVRFLAA--DNR 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ + +
Sbjct: 58 GKFKAIKIERIDPNP 72
>gi|325109282|ref|YP_004270350.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
DSM 5305]
gi|324969550|gb|ADY60328.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
DSM 5305]
Length = 65
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G+IK G D+F H S + + +L EGQ V+++
Sbjct: 1 MAEGTIKKLTDKG-----FGFIDIGGGKDLFFHMSNLEGSRFDDLQEGQRVSFNEGSGPK 55
Query: 62 NGKYSAENLKLV 73
+ AEN+KLV
Sbjct: 56 GPR--AENVKLV 65
>gi|328707108|ref|XP_003243300.1| PREDICTED: cold shock domain-containing protein E1-like isoform 3
[Acyrthosiphon pisum]
Length = 893
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+T E G +F H S V G+ L +G LV + V N +GK S N
Sbjct: 768 DAIKGLFGFLTHEVE--GGKKLFFHTSEVT-DGIK-LYQGDLVEFVLVVNQRSGKSSGCN 823
Query: 70 LKLVPKSSN 78
+ + + N
Sbjct: 824 VTKISSAEN 832
Score = 40.0 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 100 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 155
Query: 76 S 76
Sbjct: 156 E 156
Score = 36.9 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---NDANGKYSAENLK 71
G+GFI +VF + + + +L G V Y + SAEN++
Sbjct: 612 GFGFIETIALDS---EVFFRYANL-NEPSASLELGMEVEYTLSTRNTGNGGSCASAENVR 667
Query: 72 LVPKSS 77
++P S
Sbjct: 668 ILPPGS 673
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
+V + G F L G V + + + A N+ L+P+S
Sbjct: 354 EVEVSFGEKDQQGDFTLRHGDWVEFRIATDRRDQLKRATNISLLPES 400
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+G+I ++ + + L G V + +Q +GK A N++ +P
Sbjct: 254 FGYIERADIV---KEISFPFTEFKDSS-KPLQLGDDVEF-IIQT-RSGKEVACNIERLPP 307
Query: 76 SS 77
S
Sbjct: 308 GS 309
Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND----ANGKYSAE 68
+G+GF+ S E ++ + V L V + Q+ N + SA
Sbjct: 417 KQGFGFLR---SVEREPKIYFTFNEVL-DVQRKLECNDEVEFTVAQDPSSSFGNSRQSAI 472
Query: 69 NLKLVPKSS 77
+K +P+ S
Sbjct: 473 RIKHLPRGS 481
>gi|237722793|ref|ZP_04553274.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260175082|ref|ZP_05761494.1| cold shock protein, putative DNA-binding protein [Bacteroides sp.
D2]
gi|293371814|ref|ZP_06618224.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CMC
3f]
gi|299147644|ref|ZP_07040708.1| cold shock protein [Bacteroides sp. 3_1_23]
gi|315923310|ref|ZP_07919550.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|229447315|gb|EEO53106.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633266|gb|EFF51837.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CMC
3f]
gi|298514431|gb|EFI38316.1| cold shock protein [Bacteroides sp. 3_1_23]
gi|313697185|gb|EFS34020.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 161
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V + E +VT+D +
Sbjct: 87 RGRVEFFNESRGFGFIK---DLSGVEKYFFHVNNVIGN----IAENNIVTFDLERGVKG- 138
Query: 64 KYSAENLKLVPKSSN 78
+A N+ L KS++
Sbjct: 139 -MNAINISLENKSTS 152
>gi|262369348|ref|ZP_06062676.1| LOW QUALITY PROTEIN: cold shock protein [Acinetobacter johnsonii
SH046]
gi|262315416|gb|EEY96455.1| LOW QUALITY PROTEIN: cold shock protein [Acinetobacter johnsonii
SH046]
Length = 67
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G IK ++ +G+GFI EG DDVF H + + G+++ + V++
Sbjct: 1 MFLKGKIKSFSTPRGFGFIEVEGDI---DDVFFHIKDLPQNNI-EPKIGEVLQFMIVEDQ 56
Query: 61 ANGKYSAENLKLV 73
GK+ A N++ +
Sbjct: 57 --GKFKAGNIQRL 67
>gi|224539726|ref|ZP_03680265.1| hypothetical protein BACCELL_04635 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518649|gb|EEF87754.1| hypothetical protein BACCELL_04635 [Bacteroides cellulosilyticus
DSM 14838]
Length = 149
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I+ +N +GYGFI GS G+ F H ++ +TEG VT++ +
Sbjct: 87 NGRIEHFNVSRGYGFIKDLGS---GEKYFFHVTSAPE----GITEGDNVTFEIERGTRG- 138
Query: 64 KYSAENLKLV 73
+A + ++
Sbjct: 139 -MNAVRISII 147
>gi|197286813|ref|YP_002152685.1| cold-shock protein [Proteus mirabilis HI4320]
gi|227354996|ref|ZP_03839407.1| cold-shock protein [Proteus mirabilis ATCC 29906]
gi|194684300|emb|CAR45869.1| putative cold-shock protein [Proteus mirabilis HI4320]
gi|227164783|gb|EEI49630.1| cold-shock protein [Proteus mirabilis ATCC 29906]
Length = 160
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I KW+ DKG+GFI E + + A + + +VT++ N
Sbjct: 1 MAMNGTITKWF-EDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAIVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
SA +K++P S
Sbjct: 54 MKG--LSAYAVKVIPDS 68
>gi|284166832|ref|YP_003405111.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284016487|gb|ADB62438.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 64
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G++ ++N GYGFI + + +DVF H V G +L EGQ V ++ + +
Sbjct: 1 MAQGTVAFFNDTGGYGFIETDDA---DEDVFFHMEDV---GGPDLEEGQEVEFEIEEAEK 54
Query: 62 NGKYSAENLKLV 73
+ A NL+ +
Sbjct: 55 GPR--ATNLERL 64
>gi|256088411|ref|XP_002580331.1| hypothetical protein [Schistosoma mansoni]
gi|238665887|emb|CAZ36570.1| expressed protein [Schistosoma mansoni]
Length = 112
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-YVQNDANG 63
G I + DKG+GFI P+ + L G + EG +V Y + N
Sbjct: 34 GKIISFCRDKGHGFIKPDNGDDC-----LFVHVFDIDGEYVPIEGDVVEYRKMLIPPKNE 88
Query: 64 KYSAENLKLV 73
KY A ++++V
Sbjct: 89 KYQAVHVRIV 98
>gi|56413767|ref|YP_150842.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197362689|ref|YP_002142326.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56128024|gb|AAV77530.1| putative cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197094166|emb|CAR59669.1| putative cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 70
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV H SA L G V + +
Sbjct: 6 TGIVKTFDCKSGKGLITPSD---GRKDVQFHISACRLHETEALIPGIRVEFCRINGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|298369567|ref|ZP_06980884.1| cold-shock DNA-binding domain family protein [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282124|gb|EFI23612.1| cold-shock DNA-binding domain family protein [Neisseria sp. oral
taxon 014 str. F0314]
Length = 364
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+GSI ++ +KGYGFI T + +F H SA GQ V++ + G
Sbjct: 202 KGSIISWDDEKGYGFINYGSKTHN---IFFHISAFHYTNRR-PKTGQAVSFYCHPANGCG 257
Query: 64 KYSAENLKL 72
K A + L
Sbjct: 258 KQKAARVVL 266
>gi|257053889|ref|YP_003131722.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
gi|256692652|gb|ACV12989.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
12940]
Length = 64
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++ ++N GYGFI E + +DVF H V G +L EGQ V ++ + +
Sbjct: 1 MATGTVDFFNDTGGYGFIETEDA---DEDVFFHMEDV---GGPDLEEGQEVEFEIEEAEK 54
Query: 62 NGKYSAENLKLV 73
+ A+NL +
Sbjct: 55 GPR--AKNLTRL 64
>gi|196051108|gb|ACG68722.1| cold shock protein [uncultured bacterium]
Length = 39
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
VF+H A+ G +LTEGQ V Y V+ AE++
Sbjct: 1 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 38
>gi|255691170|ref|ZP_05414845.1| cold shock protein [Bacteroides finegoldii DSM 17565]
gi|260623073|gb|EEX45944.1| cold shock protein [Bacteroides finegoldii DSM 17565]
Length = 148
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G ++++N +G+GFI SG D + A+ G + E +VT+D +
Sbjct: 86 KGRVEFFNESRGFGFI----KDLSGVDKYFFHVNNAAPG---IAENDIVTFDLERGVKG- 137
Query: 64 KYSAENL 70
+A N+
Sbjct: 138 -MNAVNI 143
>gi|262280132|ref|ZP_06057917.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
gi|262260483|gb|EEY79216.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
Length = 97
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +K Y+P+KG+GFI + D+F H S ++ + V + V N
Sbjct: 6 YTGKVKQYDPEKGFGFI-----GTAEGDIFFHISDFPASE-GEPKRNEKVKFLAVDNQ-- 57
Query: 63 GKYSAENLKLVPKSSN 78
GK+ A ++ + + +
Sbjct: 58 GKFKAIKIERIDPNPS 73
>gi|329956783|ref|ZP_08297352.1| cold-shock DNA-binding domain protein [Bacteroides clarus YIT
12056]
gi|328523822|gb|EGF50909.1| cold-shock DNA-binding domain protein [Bacteroides clarus YIT
12056]
Length = 146
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V + + EG +VT+D +
Sbjct: 85 RGRVEFFNEARGFGFIK---DLAGIEKYFFHVNNV----VTEVKEGNIVTFDLERGAKG- 136
Query: 64 KYSAENLKL 72
+A N+ L
Sbjct: 137 -MNAVNINL 144
>gi|238790449|ref|ZP_04634219.1| Cold-shock DNA-binding domain protein [Yersinia frederiksenii
ATCC 33641]
gi|238721475|gb|EEQ13145.1| Cold-shock DNA-binding domain protein [Yersinia frederiksenii
ATCC 33641]
Length = 160
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAYAVKVAIESK 68
>gi|218688877|ref|YP_002397089.1| stress protein, member of the CspA-family [Escherichia coli ED1a]
gi|218426441|emb|CAR07267.1| stress protein, member of the CspA-family [Escherichia coli ED1a]
Length = 70
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G GFI P +V +H SA L V + V
Sbjct: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRDAEVLIPRLRVEFCRVNGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|238752586|ref|ZP_04614059.1| Cold-shock DNA-binding domain protein [Yersinia rohdei ATCC
43380]
gi|238709177|gb|EEQ01422.1| Cold-shock DNA-binding domain protein [Yersinia rohdei ATCC
43380]
Length = 160
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAFAVKVAIESK 68
>gi|238752131|ref|ZP_04613613.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
gi|238709604|gb|EEQ01840.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
Length = 41
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+F+H SA+ S L EGQ V + +A N+
Sbjct: 1 MFVHFSAIQSNDFKTLDEGQKVEFSIESGAKG--PAAVNV 38
>gi|238762892|ref|ZP_04623860.1| Cold-shock DNA-binding domain protein [Yersinia kristensenii ATCC
33638]
gi|238698903|gb|EEP91652.1| Cold-shock DNA-binding domain protein [Yersinia kristensenii ATCC
33638]
Length = 160
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAFAVKVAIESK 68
>gi|22125068|ref|NP_668491.1| hypothetical protein y1165 [Yersinia pestis KIM 10]
gi|108808498|ref|YP_652414.1| hypothetical protein YPA_2505 [Yersinia pestis Antiqua]
gi|108811243|ref|YP_647010.1| hypothetical protein YPN_1079 [Yersinia pestis Nepal516]
gi|145599923|ref|YP_001163999.1| hypothetical protein YPDSF_2660 [Yersinia pestis Pestoides F]
gi|229895930|ref|ZP_04511100.1| putative cold-shock protein [Yersinia pestis Pestoides A]
gi|229901478|ref|ZP_04516600.1| putative cold-shock protein [Yersinia pestis Nepal516]
gi|21957921|gb|AAM84742.1|AE013720_6 putative cold-shock protein [Yersinia pestis KIM 10]
gi|108774891|gb|ABG17410.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
gi|108780411|gb|ABG14469.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
gi|145211619|gb|ABP41026.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
F]
gi|229681407|gb|EEO77501.1| putative cold-shock protein [Yersinia pestis Nepal516]
gi|229700853|gb|EEO88882.1| putative cold-shock protein [Yersinia pestis Pestoides A]
gi|320016203|gb|ADV99774.1| putative cold-shock protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 163
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 4 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 57
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 58 GLSAFAVKVAIESK 71
>gi|307105698|gb|EFN53946.1| hypothetical protein CHLNCDRAFT_136191 [Chlorella variabilis]
Length = 1027
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
K +GFI D+F H S + + G V ++ + D GK SA ++
Sbjct: 411 KKEFGFIRQVDRPG---DMFFHFSQLDGWTAEGVKVGDDVEFNI-RRDREGKLSAVQIRR 466
Query: 73 VPKSS 77
P S
Sbjct: 467 APPGS 471
>gi|51595434|ref|YP_069625.1| hypothetical protein YPTB1087 [Yersinia pseudotuberculosis IP
32953]
gi|51588716|emb|CAH20327.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
Length = 163
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 4 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 57
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 58 GLSAFAVKVAIESK 71
>gi|168239159|ref|ZP_02664217.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737414|ref|YP_002114257.1| hypothetical protein SeSA_A1329 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|204930811|ref|ZP_03221684.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|194712916|gb|ACF92137.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197288141|gb|EDY27528.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|204320270|gb|EDZ05474.1| conserved domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 70
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV +H SA + L G V + +
Sbjct: 6 TGIVKTFDCKSGKGLITPSD---GRKDVQVHISAFSQHETEALIPGIRVEFCRINGLRG- 61
Query: 64 KYSAENL 70
+A N+
Sbjct: 62 -PTAANV 67
>gi|255018523|ref|ZP_05290649.1| major cold-shock protein [Listeria monocytogenes FSL F2-515]
Length = 27
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGST 25
+ G++KW+N +KG+GFI EG
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEGGD 24
>gi|292489023|ref|YP_003531910.1| cold shock-like protein CspL [Erwinia amylovora CFBP1430]
gi|292900156|ref|YP_003539525.1| cold shock protein [Erwinia amylovora ATCC 49946]
gi|291200004|emb|CBJ47128.1| putative cold shock protein [Erwinia amylovora ATCC 49946]
gi|291554457|emb|CBA21960.1| Cold shock-like protein cspLA (CspL) [Erwinia amylovora CFBP1430]
gi|312173187|emb|CBX81442.1| Cold shock-like protein cspLA (CspL) [Erwinia amylovora ATCC
BAA-2158]
Length = 160
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+VP S
Sbjct: 54 NKG--LSACAVKVVPDS 68
>gi|148231151|ref|NP_001089414.1| cold shock domain protein A [Xenopus laevis]
gi|62740182|gb|AAH94195.1| MGC115344 protein [Xenopus laevis]
Length = 221
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
+G++KW+N GYGFI + +DVF+H+ A
Sbjct: 37 QGTVKWFNVRNGYGFINRNDTK---EDVFVHQGA 67
>gi|319955580|ref|YP_004166847.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
gi|319424240|gb|ADV51349.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
14237]
Length = 147
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G ++++N KGYGFI TE+ + F+H L + E +V ++ +
Sbjct: 87 KGRVEFFNDSKGYGFIK---DTETQEKFFVHVQGC----LEEIKENNMVQFELERGMKG- 138
Query: 64 KYSAENLKLV 73
+A +K V
Sbjct: 139 -MNAVRVKKV 147
>gi|45440951|ref|NP_992490.1| hypothetical protein YP_1121 [Yersinia pestis biovar Microtus
str. 91001]
gi|166008568|ref|ZP_02229466.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212632|ref|ZP_02238667.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399412|ref|ZP_02304936.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167423108|ref|ZP_02314861.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270489664|ref|ZP_06206738.1| cold-shock DNA-binding domain protein [Yersinia pestis KIM D27]
gi|45435810|gb|AAS61367.1| putative cold-shock protein [Yersinia pestis biovar Microtus str.
91001]
gi|165992950|gb|EDR45251.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206563|gb|EDR51043.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167051916|gb|EDR63324.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057278|gb|EDR67024.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|262362610|gb|ACY59331.1| putative cold-shock protein [Yersinia pestis D106004]
gi|262366387|gb|ACY62944.1| putative cold-shock protein [Yersinia pestis D182038]
gi|270338168|gb|EFA48945.1| cold-shock DNA-binding domain protein [Yersinia pestis KIM D27]
Length = 160
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAFAVKVAIESK 68
>gi|269961075|ref|ZP_06175444.1| hypothetical protein VME_18280 [Vibrio harveyi 1DA3]
gi|269834294|gb|EEZ88384.1| hypothetical protein VME_18280 [Vibrio harveyi 1DA3]
Length = 911
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 5 GSIKWY---NPDKG----YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G++ W+ N G +GFIT T VF+H++ V L EG++V ++ +
Sbjct: 10 GTVDWFGGKNKRTGRNNHFGFITIHDYTS----VFVHKNEVNGG---VLEEGEVVVFELI 62
Query: 58 QNDANGKYSAENL 70
+ D N K SA+N+
Sbjct: 63 K-DVNNKLSAKNV 74
>gi|255025943|ref|ZP_05297929.1| major cold-shock protein [Listeria monocytogenes FSL J2-003]
Length = 28
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGST 25
+ G++KW+N +KG+GFI EG
Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEGGD 24
>gi|92116742|ref|YP_576471.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
hamburgensis X14]
gi|91799636|gb|ABE62011.1| putative cold-shock DNA-binding domain protein [Nitrobacter
hamburgensis X14]
Length = 66
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
H SAV AG+ + E Q V++D V + GK +AENL+
Sbjct: 25 RCHISAVERAGVSSFHEWQNVSFDIVVDRRTGKSAAENLR 64
>gi|238791627|ref|ZP_04635265.1| Cold-shock DNA-binding domain protein [Yersinia intermedia ATCC
29909]
gi|238729243|gb|EEQ20759.1| Cold-shock DNA-binding domain protein [Yersinia intermedia ATCC
29909]
Length = 160
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAFAVKVAIESK 68
>gi|328886068|emb|CCA59307.1| hypothetical protein SVEN_6021 [Streptomyces venezuelae ATCC
10712]
Length = 68
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + +N GYGF+ P GS + ++ + L+EGQ V++ V D G
Sbjct: 6 KGFVHSFNRAGGYGFVVPLGSE---EQIWFSAEDIEGED-RALSEGQQVSFVLVLGD--G 59
Query: 64 KYSAENLK 71
++ A+ L+
Sbjct: 60 RFEAKELR 67
>gi|89071109|ref|ZP_01158312.1| cold shock protein CspA [Oceanicola granulosus HTCC2516]
gi|89043357|gb|EAR49578.1| cold shock protein CspA [Oceanicola granulosus HTCC2516]
Length = 40
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 33 LHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+H SAV +GL +L + Q VT+D + +G+ SA NL L
Sbjct: 1 MHISAVERSGLTDLRDDQKVTFDI-EPGRDGRESAVNLAL 39
>gi|149758597|ref|XP_001494108.1| PREDICTED: similar to Y-box protein 3 short [Equus caballus]
Length = 138
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
RGSIK +N Y FI+ + +DVF+H++A+ ++ G++V D VQ
Sbjct: 17 RGSIKRFNVKNRYSFISRHDTQ---EDVFVHQTAITRNNPHKYQRSVGVGEMVELDVVQG 73
Query: 60 DAN 62
Sbjct: 74 KPG 76
>gi|153948592|ref|YP_001401921.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis IP 31758]
gi|152960087|gb|ABS47548.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis IP 31758]
Length = 160
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAFAVKVAIESK 68
>gi|312198421|ref|YP_004018482.1| Cold-shock protein DNA-binding protein [Frankia sp. EuI1c]
gi|311229757|gb|ADP82612.1| Cold-shock protein DNA-binding protein [Frankia sp. EuI1c]
Length = 137
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
++ +GYGFI P G G+D+FLH + + +T G + ++ Q D K A
Sbjct: 4 FDQVRGYGFIAPTG---GGEDIFLHANDLLVDKH-LVTAGVTMEFEVEQGDRGPK--ATG 57
Query: 70 LKLVPKSS 77
+LV +
Sbjct: 58 ARLVRSAP 65
>gi|226364927|ref|YP_002782709.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
gi|226243416|dbj|BAH53764.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
B4]
Length = 949
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD---YVQND 60
G+++ ++ ++G G I + + + H VA +G+ +LT GQ VT++ V
Sbjct: 878 TGTVRTWSDEEGCGVIDSDATPGG---AWTHARNVAGSGVHSLTPGQHVTFEPEKVVSGT 934
Query: 61 ANG-KYSAENLKLV 73
+G Y A +++ V
Sbjct: 935 QDGYHYRALDVRKV 948
>gi|69246264|ref|ZP_00603877.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
gi|68195365|gb|EAN09814.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
Length = 52
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 22 EGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+ S + + S + G L EGQ VT+D ++D A N+
Sbjct: 2 DLSHVKMEATYSFTSQLSQGDGFKTLEEGQAVTFDVEESDRG--PQAANV 49
>gi|330876787|gb|EGH10936.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 24
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 2 VHRGSIKWYNPDKGYGFITP 21
G++KW+N +KG+GFITP
Sbjct: 4 RQTGTVKWFNDEKGFGFITP 23
>gi|295133858|ref|YP_003584534.1| cold shock-like protein [Zunongwangia profunda SM-A87]
gi|294981873|gb|ADF52338.1| cold shock-like protein [Zunongwangia profunda SM-A87]
Length = 145
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + + +KG+GFI + SGD++F+H + L+E V+Y ++
Sbjct: 84 TGVVISFFENKGFGFIKDD---ISGDNIFVHH----QDSVKPLSERMKVSYRKERSPKG- 135
Query: 64 KYSAENLKLVP 74
+ A +++++
Sbjct: 136 -FQATSVEVLD 145
>gi|238795420|ref|ZP_04638935.1| Cold-shock DNA-binding domain protein [Yersinia mollaretii ATCC
43969]
gi|238720539|gb|EEQ12340.1| Cold-shock DNA-binding domain protein [Yersinia mollaretii ATCC
43969]
Length = 160
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 1 MMNGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTK 54
Query: 62 NGKYSAENLKLVPK 75
A + + K
Sbjct: 55 GLSAFAVKVAIESK 68
>gi|328853198|gb|EGG02338.1| hypothetical protein MELLADRAFT_91428 [Melampsora larici-populina
98AG31]
Length = 929
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDY 56
G K YN DKG GF+ + E DV +H + + S +L +G++V Y
Sbjct: 417 GRCKMYNCDKGVGFLIDDDLEEVPYDVKIHWTDLYSDQEFKSLAKGEVVEYTL 469
>gi|323457293|gb|EGB13159.1| hypothetical protein AURANDRAFT_60508 [Aureococcus anophagefferens]
Length = 670
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+IK + P+KG+GF T G DVF HRS+V+ + + L G VT ++ K
Sbjct: 252 TIKSWRPEKGFGFCTVPG---EAKDVFFHRSSVSGS-VDALRAGAEVTVTVGRDGRGRKQ 307
>gi|212712034|ref|ZP_03320162.1| hypothetical protein PROVALCAL_03110 [Providencia alcalifaciens
DSM 30120]
gi|212685556|gb|EEB45084.1| hypothetical protein PROVALCAL_03110 [Providencia alcalifaciens
DSM 30120]
Length = 41
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+F+H SA+ S L EGQ V++ +A N+ +
Sbjct: 1 MFVHFSAIQSDSFKTLNEGQKVSFSVANGAKG--PAAANVVAL 41
>gi|50120514|ref|YP_049681.1| putative cold-shock protein [Pectobacterium atrosepticum
SCRI1043]
gi|49611040|emb|CAG74485.1| putative cold-shock protein [Pectobacterium atrosepticum
SCRI1043]
Length = 160
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+VP+S
Sbjct: 54 NKG--LSAYAVKVVPES 68
>gi|289755774|ref|ZP_06515152.1| LOW QUALITY PROTEIN: cold-shock domain-containing protein
[Mycobacterium tuberculosis EAS054]
gi|289696361|gb|EFD63790.1| LOW QUALITY PROTEIN: cold-shock domain-containing protein
[Mycobacterium tuberculosis EAS054]
Length = 68
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 2 VHRGSIKWYNPDKGYGFITP 21
+ +G++KW+N +KG+G ++P
Sbjct: 1 MPQGTVKWFNAEKGFGLLSP 20
>gi|157960755|ref|YP_001500789.1| cold-shock DNA-binding domain-containing protein [Shewanella
pealeana ATCC 700345]
gi|157845755|gb|ABV86254.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
700345]
Length = 205
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I +N DKG+GFI E VFLH SA AS G+ V + + D G
Sbjct: 8 TGVIDSWNDDKGFGFIQ---IPEQKQQVFLHISAFASQSPR-PQSGKQVQFTLAK-DKQG 62
Query: 64 KYSAENLKLVPKSS 77
K+ AE +L+ S
Sbjct: 63 KWRAEKAQLLSGGS 76
>gi|299531202|ref|ZP_07044613.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
S44]
gi|298720785|gb|EFI61731.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
S44]
Length = 224
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
M + G++ +N ++G+G+I +G G+ +F+H SA G + +
Sbjct: 1 MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEPRPPAEQRPRPGLRLEFSV-- 55
Query: 59 NDANGKYSAENL 70
G+ A +
Sbjct: 56 GMEQGRKRALQV 67
>gi|213021626|ref|ZP_03336073.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
gi|213608020|ref|ZP_03368846.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 38
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
H SA+ S L E Q V + Q SA N+ +
Sbjct: 1 HFSAIQSNEFRTLNENQEVEFSAEQGPKG--PSAVNVVAL 38
>gi|227114570|ref|ZP_03828226.1| putative cold-shock protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 160
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAEVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+VP+S
Sbjct: 54 NKG--LSAYAVKVVPES 68
>gi|218132095|ref|ZP_03460899.1| hypothetical protein BACEGG_03722 [Bacteroides eggerthii DSM 20697]
gi|317477121|ref|ZP_07936362.1| cold-shock' DNA-binding domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|217985745|gb|EEC52086.1| hypothetical protein BACEGG_03722 [Bacteroides eggerthii DSM 20697]
gi|316906664|gb|EFV28377.1| cold-shock' DNA-binding domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 147
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V + + EG +VT+D +
Sbjct: 85 RGRVEFFNESRGFGFIK---DLSGVEKYFFHVNNV----VTEIKEGNVVTFDLERGIKG- 136
Query: 64 KYSAENL 70
+A N+
Sbjct: 137 -MNAVNI 142
>gi|317491867|ref|ZP_07950302.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920301|gb|EFV41625.1| cold-shock' DNA-binding domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 160
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68
>gi|322823854|gb|EFZ29482.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 458
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
D+F+H+S + G L+ G V + + A +++ +S
Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESG 325
>gi|71652991|ref|XP_815141.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70880174|gb|EAN93290.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 458
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
D+F+H+S + G L+ G V + + A +++ +S
Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESG 325
>gi|71657728|ref|XP_817375.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882562|gb|EAN95524.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 458
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
D+F+H+S + G L+ G V + + A +++ +S
Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESG 325
>gi|330884367|gb|EGH18516.1| hypothetical protein Pgy4_36727 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 23
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 2 VHRGSIKWYNPDKGYGFITP 21
G++KW+N +KG+GFITP
Sbjct: 4 RQTGTVKWFNDEKGFGFITP 23
>gi|121604253|ref|YP_981582.1| cold-shock DNA-binding domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120593222|gb|ABM36661.1| cold-shock DNA-binding protein family [Polaromonas
naphthalenivorans CJ2]
Length = 69
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K Y P KG+GFI+ G D+F +R +V L EG V++ +
Sbjct: 8 GVVKVYYPLKGFGFISRA----KGKDLFFYRDSVKDE--AALIEGATVSFQIKTTEKG-- 59
Query: 65 YSAENLK 71
A NL
Sbjct: 60 LRAVNLT 66
>gi|295085350|emb|CBK66873.1| cold-shock DNA-binding protein family [Bacteroides xylanisolvens
XB1A]
Length = 161
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V + E +VT+D +
Sbjct: 87 RGRVEFFNESRGFGFIK---DLSGVEKYFFHVNNVVGN----IAENNIVTFDLERGVKG- 138
Query: 64 KYSAENLKL 72
+A N+ L
Sbjct: 139 -MNAVNISL 146
>gi|301106296|ref|XP_002902231.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098851|gb|EEY56903.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 1293
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 15 GYGFITPEGSTES--GDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
G+GFI P + +++F H + L L EG V Y ++ K A +
Sbjct: 923 GFGFIQPAQTVPGTLEENLFFHIKEITTGQTLAELKEGTEVQYTVFVDEKKKKNRATAIS 982
Query: 72 LVPKSS 77
+VP +
Sbjct: 983 VVPTGT 988
Score = 35.0 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI + D + S V + G V +D + ++ + A L+++P+
Sbjct: 638 FGFIKCAERSG---DAYFRFSDVMGTS-RSFNNGTEVAFDVLVDNKSDHIRATRLQILPR 693
Query: 76 SS 77
+
Sbjct: 694 GT 695
>gi|302531785|ref|ZP_07284127.1| predicted protein [Streptomyces sp. AA4]
gi|302440680|gb|EFL12496.1| predicted protein [Streptomyces sp. AA4]
Length = 146
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG++ +N GYG+I P+ G+DV+ +T GQ V ++ + A+
Sbjct: 84 RGTVLIFNVRDGYGYIRPDD---GGEDVYFDSRDAEG----PITSGQRVEFE-DKPQADA 135
Query: 64 KYSA 67
+ +A
Sbjct: 136 RPAA 139
>gi|73969434|ref|XP_538352.2| PREDICTED: similar to RNA-binding protein pippin [Canis familiaris]
Length = 231
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
+G K ++ +G+GFITPE +D+F+H S L E VTY N
Sbjct: 148 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSDPQGEYLP--MESHQVTYKMCPIPPKN 202
Query: 63 GKYSAENLKLVPKSS 77
K+ A + L +
Sbjct: 203 QKFQAVEVVLTQLAP 217
>gi|299771405|ref|YP_003733431.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
gi|298701493|gb|ADI92058.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
Length = 97
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +K Y+PDKG+GFI+ + D+F H S ++ + V + N
Sbjct: 6 YTGKVKQYDPDKGFGFIS-----TTEGDIFFHISDFPASE-GEPKRNEKVRFLAADNQ-- 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ + +
Sbjct: 58 GKFKAIKIERIDPNP 72
>gi|206578678|ref|YP_002237869.1| cold-shock DNA-binding domain protein [Klebsiella pneumoniae 342]
gi|288934798|ref|YP_003438857.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
gi|206567736|gb|ACI09512.1| cold-shock DNA-binding domain protein [Klebsiella pneumoniae 342]
gi|288889507|gb|ADC57825.1| cold-shock DNA-binding domain protein [Klebsiella variicola
At-22]
Length = 160
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGEN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68
>gi|255073363|ref|XP_002500356.1| predicted protein [Micromonas sp. RCC299]
gi|226515619|gb|ACO61614.1| predicted protein [Micromonas sp. RCC299]
Length = 736
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 5 GSIKWYNPDKGYGFITPEG-------------STESGDDVFLHRSAVASAGLFNLTEGQL 51
G + W+ P +G G I P+G + +V + R A+A G L G+
Sbjct: 190 GRVAWWKPARGVGAIVPDGVVGARNEGAGGGEEEFATKEVSVTRDALAG-GADTLAPGEG 248
Query: 52 VTYDYVQNDANGKYSAENLK 71
V +D + + + A N+
Sbjct: 249 VWFDLESSGPSDRSVAVNVT 268
>gi|331234220|ref|XP_003329770.1| hypothetical protein PGTG_11520 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308760|gb|EFP85351.1| hypothetical protein PGTG_11520 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 946
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDY 56
G K YN DKG GF+ + + DV +H + + S +L +G++V Y
Sbjct: 290 GRCKMYNCDKGVGFLIDDRLDQVPQDVKIHWTDIFSDQEFKSLAKGEIVEYTL 342
>gi|237713857|ref|ZP_04544338.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262409234|ref|ZP_06085778.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645799|ref|ZP_06723483.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CC 2a]
gi|294809472|ref|ZP_06768176.1| cold-shock DNA-binding domain protein [Bacteroides xylanisolvens SD
CC 1b]
gi|298482321|ref|ZP_07000508.1| cold shock protein [Bacteroides sp. D22]
gi|229446013|gb|EEO51804.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262352981|gb|EEZ02077.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638878|gb|EFF57212.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CC 2a]
gi|294443344|gb|EFG12107.1| cold-shock DNA-binding domain protein [Bacteroides xylanisolvens SD
CC 1b]
gi|298271608|gb|EFI13182.1| cold shock protein [Bacteroides sp. D22]
Length = 161
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V +TE +VT+D +
Sbjct: 87 RGRVEFFNESRGFGFIK---DLSGVEKYFFHVNNVVGN----ITENNIVTFDLERGVKG- 138
Query: 64 KYSAENLKL 72
+A N+ L
Sbjct: 139 -MNAVNISL 146
>gi|227327353|ref|ZP_03831377.1| putative cold-shock protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 160
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGEN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAYAVKVLPES 68
>gi|290508923|ref|ZP_06548294.1| cold shock protein E [Klebsiella sp. 1_1_55]
gi|289778317|gb|EFD86314.1| cold shock protein E [Klebsiella sp. 1_1_55]
Length = 160
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGEN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68
>gi|264676475|ref|YP_003276381.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
CNB-2]
gi|262206987|gb|ACY31085.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
CNB-2]
Length = 224
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
M + G++ +N ++G+G+I +G G+ +F+H SA G + +
Sbjct: 1 MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEPRPPAEQRPQPGLRLEFSV-- 55
Query: 59 NDANGKYSAENL 70
G+ A +
Sbjct: 56 GMEQGRKRALQV 67
>gi|239501279|ref|ZP_04660589.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
AB900]
gi|260555664|ref|ZP_05827884.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
gi|260410575|gb|EEX03873.1| cold shock domain-containing protein CspD [Acinetobacter
baumannii ATCC 19606]
Length = 97
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G IK YN DKG+GFI+ + D+F H S ++ + V + D
Sbjct: 6 YTGRIKQYNADKGFGFIS-----TTEGDIFFHISDFPASE-GEPKRNEKVRFLAA--DNR 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ + +
Sbjct: 58 GKFKAIKIERIDPNP 72
>gi|152970826|ref|YP_001335935.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238895333|ref|YP_002920068.1| cold shock protein E [Klebsiella pneumoniae NTUH-K2044]
gi|262041867|ref|ZP_06015051.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330002098|ref|ZP_08304183.1| cold-shock DNA-binding domain protein [Klebsiella sp. MS 92-3]
gi|150955675|gb|ABR77705.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238547650|dbj|BAH64001.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259040772|gb|EEW41859.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328537467|gb|EGF63704.1| cold-shock DNA-binding domain protein [Klebsiella sp. MS 92-3]
Length = 160
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGEN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68
>gi|253687854|ref|YP_003017044.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754432|gb|ACT12508.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 160
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGEN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAYAVKVLPES 68
>gi|153809379|ref|ZP_01962047.1| hypothetical protein BACCAC_03693 [Bacteroides caccae ATCC 43185]
gi|149127965|gb|EDM19187.1| hypothetical protein BACCAC_03693 [Bacteroides caccae ATCC 43185]
Length = 152
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI + F H + V + E +VT+D +
Sbjct: 90 RGRVEFFNEARGFGFIKDLN---GVEKYFFHVNNVVGN----IVENNIVTFDLERGTKG- 141
Query: 64 KYSAENL 70
+A N+
Sbjct: 142 -MNAVNI 147
>gi|120555876|ref|YP_960227.1| hypothetical protein Maqu_2966 [Marinobacter aquaeolei VT8]
gi|120325725|gb|ABM20040.1| protein of unknown function DUF1294 [Marinobacter aquaeolei VT8]
Length = 214
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + +N KG+GFITPE G+ +F H SA G + + V Y D
Sbjct: 1 MNQKGLLTSWNDAKGFGFITPEN---GGERLFAHISAYQGRGRPSASR--KVVY-AQTKD 54
Query: 61 ANGKYSA 67
G+ A
Sbjct: 55 EKGRLRA 61
>gi|261822120|ref|YP_003260226.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
gi|261606133|gb|ACX88619.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
WPP163]
Length = 160
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+VP+S
Sbjct: 54 NKG--LSAYAVKVVPES 68
>gi|198417545|ref|XP_002127595.1| PREDICTED: similar to AGAP004937-PA [Ciona intestinalis]
Length = 1110
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 11 NPDKG-YGFITPE----GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+ KG +GFI E +T +F H S V +T G V + + N +GK+
Sbjct: 986 DSIKGEFGFINYEVKGGDTTGGSGKLFFHMSEVR-DATQQITAGSTVEFSVIYNQRSGKF 1044
Query: 66 SAENLKLVPKSS 77
SA ++L
Sbjct: 1045 SASKVRLAEAQP 1056
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 8 KWYNP-----DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
K +N + +GFI ++F H S V + + +L G V + + N
Sbjct: 336 KRFNGIVTAMKESFGFIERSDIV---KEIFFHYSEVLAN-VPDLHVGDHVEFSVQE--RN 389
Query: 63 GKYSAENLKLVPKSS 77
K A ++L+P +
Sbjct: 390 NKDVATEIRLLPLGT 404
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +F H S L + ++ + GK A + + K
Sbjct: 158 YGFIKCADREG---RLFFHYSQFHGEAH-TLHINDEIEFEVSMDTRTGKPVAVQVVKLQK 213
Query: 76 SS 77
+
Sbjct: 214 GT 215
Score = 34.6 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 46 LTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
L G V+++ G A + LV ++
Sbjct: 303 LLPGDKVSFNIATEKRTGVMRARKITLVERAP 334
Score = 34.6 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
G I+ T + A+ L L +G V++ + + NG+ A + L+
Sbjct: 470 GIISYIAPTGETFKIRFGEKDRAANCLHTLCKGDKVSFLTITDKRNGQQRAAGVTLL 526
>gi|86145857|ref|ZP_01064185.1| hypothetical protein MED222_13695 [Vibrio sp. MED222]
gi|85836312|gb|EAQ54442.1| hypothetical protein MED222_13695 [Vibrio sp. MED222]
Length = 155
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
G I + ++G+GFI + D+F+H S G + G V +
Sbjct: 2 NGKIVRWVDERGFGFINSDELKG---DIFVHISKFRK-GYRSPKVGDSVEFQL 50
>gi|51244089|ref|YP_063973.1| hypothetical protein DP0237 [Desulfotalea psychrophila LSv54]
gi|50875126|emb|CAG34966.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54]
Length = 195
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G I+ + ++G+GFI S +S +F+H SA A G ++Y ++ D NG
Sbjct: 7 QGKIEKWVGERGFGFIK---SEKSAKSIFVHISAFDRAISRAPRVGDTISY-CLRTDHNG 62
Query: 64 KYSAEN--LKLVP 74
K A + +K +P
Sbjct: 63 KTKAVDAIIKGLP 75
>gi|148261973|ref|YP_001236100.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
cryptum JF-5]
gi|326405482|ref|YP_004285564.1| putative cold shock protein [Acidiphilium multivorum AIU301]
gi|146403654|gb|ABQ32181.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5]
gi|325052344|dbj|BAJ82682.1| putative cold shock protein [Acidiphilium multivorum AIU301]
Length = 186
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + + D YGFI + G +V+ HR++VA G L G V +
Sbjct: 120 GQVVRFVADADYGFIATDD----GREVYFHRNSVAGNGFARLRVGDDVRLAVAEGRDG-- 173
Query: 65 YSAENLKLVPKSS 77
A ++ +
Sbjct: 174 PQASLVRPAGRGG 186
>gi|298385204|ref|ZP_06994763.1| cold shock protein [Bacteroides sp. 1_1_14]
gi|298262348|gb|EFI05213.1| cold shock protein [Bacteroides sp. 1_1_14]
Length = 112
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI D F H + V ++EG +VT+D +
Sbjct: 46 RGRVEFFNEARGFGFIK---DLAGVDKYFFHVNNVVGN----ISEGNIVTFDLERGVKG- 97
Query: 64 KYSAENL 70
+A N+
Sbjct: 98 -MNAVNI 103
>gi|167761791|ref|ZP_02433918.1| hypothetical protein BACSTE_00132 [Bacteroides stercoris ATCC
43183]
gi|167700297|gb|EDS16876.1| hypothetical protein BACSTE_00132 [Bacteroides stercoris ATCC
43183]
Length = 146
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG I+++N +G+GFI + F H + V + ++ EG +VT+D +
Sbjct: 85 RGRIEFFNEARGFGFIK---DLAGIEKYFFHVNNV----VTDVREGNIVTFDLERGAKG- 136
Query: 64 KYSAENL 70
+A N+
Sbjct: 137 -MNAVNI 142
>gi|170020091|ref|YP_001725045.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli ATCC 8739]
gi|293405061|ref|ZP_06649053.1| cold shock-like protein cspF [Escherichia coli FVEC1412]
gi|298380706|ref|ZP_06990305.1| cold shock-like protein cspF [Escherichia coli FVEC1302]
gi|312969570|ref|ZP_07783753.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|169755019|gb|ACA77718.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
8739]
gi|291427269|gb|EFF00296.1| cold shock-like protein cspF [Escherichia coli FVEC1412]
gi|298278148|gb|EFI19662.1| cold shock-like protein cspF [Escherichia coli FVEC1302]
gi|310337855|gb|EFQ02944.1| cold shock-like protein cspI [Escherichia coli 1827-70]
gi|315619488|gb|EFV00016.1| cold shock-like protein cspI [Escherichia coli 3431]
gi|323185904|gb|EFZ71261.1| cold shock-like protein cspI [Escherichia coli 1357]
gi|323190391|gb|EFZ75667.1| cold shock-like protein cspI [Escherichia coli RN587/1]
gi|325499886|gb|EGC97745.1| Qin prophage; cold shock protein [Escherichia fergusonii ECD227]
Length = 66
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV LH SA+ +T G V + +
Sbjct: 2 TGIVKTFDGKSGKGLITPSDGRI---DVQLHVSALNLRDAEEITTGLRVEFCRINGLRG- 57
Query: 64 KYSAENL 70
SA N+
Sbjct: 58 -PSAANV 63
>gi|262376763|ref|ZP_06069991.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
gi|262308473|gb|EEY89608.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
SH145]
Length = 97
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G IK Y+P KG+GFI DVF H S A + V ++ V+N
Sbjct: 6 YQGKIKQYDPAKGFGFIGCAEG-----DVFFHISDFPVAE-GEPKRNERVKFNVVEN--G 57
Query: 63 GKYSAENLKLVPKSS 77
KY A ++ V +S
Sbjct: 58 DKYKAIKIERVEDNS 72
>gi|268592402|ref|ZP_06126623.1| putative cold-shock protein [Providencia rettgeri DSM 1131]
gi|291312188|gb|EFE52641.1| putative cold-shock protein [Providencia rettgeri DSM 1131]
Length = 160
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + V A + + VT++ N
Sbjct: 1 MAMNGTITTWF-EDKGFGFIKDENGDN------RYFHVVKVANPDLIKKNAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K++P+S
Sbjct: 54 NKG--LSAFAVKVIPES 68
>gi|226327443|ref|ZP_03802961.1| hypothetical protein PROPEN_01314 [Proteus penneri ATCC 35198]
gi|225203969|gb|EEG86323.1| hypothetical protein PROPEN_01314 [Proteus penneri ATCC 35198]
Length = 160
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G I KW+ DKG+GFI E + + A + VT++ N
Sbjct: 1 MAMNGIITKWF-EDKGFGFIKDENGDN------RYFHVIKVANPALIKTDANVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
SA +K++P S
Sbjct: 54 TKG--LSAYAVKVIPDS 68
>gi|145629455|ref|ZP_01785253.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
gi|144978298|gb|EDJ88062.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
Length = 34
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTES 27
+ G +KW+N KG+GFI+ EG
Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVDAD 26
>gi|153836304|ref|ZP_01988971.1| cold shock domain family protein [Vibrio parahaemolyticus AQ3810]
gi|260364958|ref|ZP_05777529.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
gi|260365000|ref|ZP_05777571.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
gi|260879605|ref|ZP_05891960.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
gi|260879646|ref|ZP_05892001.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
gi|260894920|ref|ZP_05903416.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
gi|260898880|ref|ZP_05907321.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
gi|260901090|ref|ZP_05909485.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
gi|149750579|gb|EDM61324.1| cold shock domain family protein [Vibrio parahaemolyticus AQ3810]
gi|165994449|dbj|BAF99671.1| cold shock domain family protein [Vibrio parahaemolyticus]
gi|308086046|gb|EFO35741.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
gi|308086625|gb|EFO36320.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
gi|308093209|gb|EFO42904.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
gi|308093406|gb|EFO43101.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
gi|308110750|gb|EFO48290.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
gi|308111670|gb|EFO49210.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
gi|308111707|gb|EFO49247.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
Length = 155
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G I + D+G+GFI S E D+F+H S G G V + V N
Sbjct: 2 KGIIVRWVDDRGFGFI---NSEELDGDIFVHVSKFKK-GYRRPQIGDQVEFQLVNNA--P 55
Query: 64 KYSAENLKLVPKSSN 78
K SA +L+ N
Sbjct: 56 KLSASTAQLLGVEPN 70
>gi|333030414|ref|ZP_08458475.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
gi|332741011|gb|EGJ71493.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
Length = 144
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K+YN D+G+GFI ES + F H S + VT+ +
Sbjct: 85 GHVKFYNEDRGFGFIK---DKESVEQYFFHISNAPED----IERNDHVTFRLEDSPRG-- 135
Query: 65 YSAENLK 71
+A ++
Sbjct: 136 LNAVEVE 142
>gi|224369352|ref|YP_002603516.1| putative cold shock domain family protein [Desulfobacterium
autotrophicum HRM2]
gi|223692069|gb|ACN15352.1| putative cold shock domain family protein [Desulfobacterium
autotrophicum HRM2]
Length = 174
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + +N ++G+GFI S D+F+H S + ++ +D+V +D
Sbjct: 1 MKQKGKLVRWNENRGFGFIK---SPAIKGDLFIHISELKKMSRR-PKVNDIIYFDHVTDD 56
Query: 61 ANGKYSAENLKL 72
K A N ++
Sbjct: 57 TGKK-KAINARI 67
>gi|260777410|ref|ZP_05886304.1| predicted membrane protein [Vibrio coralliilyticus ATCC BAA-450]
gi|260607076|gb|EEX33350.1| predicted membrane protein [Vibrio coralliilyticus ATCC BAA-450]
Length = 200
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G+I ++ KGYG+I+ + A + + V + ++
Sbjct: 1 MAIQGTISEWHDTKGYGYISVDDQEAQIKFHLCDLEAYGHPPRIS----ERVQFRLAKDA 56
Query: 61 ANGKYSAENLK 71
G A N++
Sbjct: 57 QGG-IRAVNVE 66
>gi|331668013|ref|ZP_08368868.1| conserved domain protein [Escherichia coli TA271]
gi|331064755|gb|EGI36659.1| conserved domain protein [Escherichia coli TA271]
Length = 66
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV LH SA+ +T G V + +
Sbjct: 2 TGIVKNFDGKSGKGLITPSDGRI---DVQLHVSALNLRDAEEITTGLRVEFYRINGLRG- 57
Query: 64 KYSAENL 70
SA N+
Sbjct: 58 -PSAANV 63
>gi|28898563|ref|NP_798168.1| hypothetical protein VP1789 [Vibrio parahaemolyticus RIMD
2210633]
gi|28806781|dbj|BAC60052.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 164
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
++ +G I + D+G+GFI S E D+F+H S G G V + V N
Sbjct: 9 IM-KGIIVRWVDDRGFGFI---NSEELDGDIFVHVSKFKK-GYRRPQIGDQVEFQLVNNA 63
Query: 61 ANGKYSAENLKLVPKSSN 78
K SA +L+ N
Sbjct: 64 --PKLSASTAQLLGVEPN 79
>gi|16129517|ref|NP_416076.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. MG1655]
gi|26249027|ref|NP_755067.1| cold shock-like protein cspF [Escherichia coli CFT073]
gi|89108400|ref|AP_002180.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
gi|170081226|ref|YP_001730546.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. DH10B]
gi|193066948|ref|ZP_03047917.1| conserved domain protein [Escherichia coli E110019]
gi|194436432|ref|ZP_03068533.1| conserved domain protein [Escherichia coli 101-1]
gi|218551642|ref|YP_002385434.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
35469]
gi|218554120|ref|YP_002387033.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
gi|218561569|ref|YP_002394482.1| cold shock protein; Qin prophage [Escherichia coli S88]
gi|218699872|ref|YP_002407501.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
gi|218705060|ref|YP_002412579.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
gi|238900778|ref|YP_002926574.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
gi|260855296|ref|YP_003229187.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
gi|300899667|ref|ZP_07117898.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
gi|300903930|ref|ZP_07121825.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
gi|300919924|ref|ZP_07136386.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
gi|300925264|ref|ZP_07141159.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
gi|300938349|ref|ZP_07153103.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
gi|301306488|ref|ZP_07212554.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
gi|301326429|ref|ZP_07219781.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
gi|301647721|ref|ZP_07247514.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
gi|307138213|ref|ZP_07497569.1| putative cold shock protein [Escherichia coli H736]
gi|307310876|ref|ZP_07590522.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|331642146|ref|ZP_08343281.1| major cold shock protein Cspa1 [Escherichia coli H736]
gi|331680502|ref|ZP_08381161.1| major cold shock protein Cspa1 [Escherichia coli H591]
gi|71154160|sp|P0A977|CSPF_ECOL6 RecName: Full=Cold shock-like protein CspF; Short=CSP-F
gi|71154161|sp|P0A976|CSPF_ECOLI RecName: Full=Cold shock-like protein CspF; Short=CSP-F
gi|26109434|gb|AAN81637.1|AE016765_39 Cold shock-like protein cspF [Escherichia coli CFT073]
gi|1742553|dbj|BAA15257.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
gi|1787840|gb|AAC74631.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. MG1655]
gi|2226342|gb|AAB61740.1| CspF [Escherichia coli str. K-12 substr. W3110]
gi|169889061|gb|ACB02768.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
substr. DH10B]
gi|192959538|gb|EDV89972.1| conserved domain protein [Escherichia coli E110019]
gi|194424464|gb|EDX40450.1| conserved domain protein [Escherichia coli 101-1]
gi|218359184|emb|CAQ91848.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
35469]
gi|218360888|emb|CAQ98458.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
gi|218368338|emb|CAR06157.1| cold shock protein; Qin prophage [Escherichia coli S88]
gi|218369858|emb|CAR17632.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
gi|218432157|emb|CAR13045.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
gi|238863369|gb|ACR65367.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
gi|257753945|dbj|BAI25447.1| predicted cold shock protein [Escherichia coli O26:H11 str.
11368]
gi|260449319|gb|ACX39741.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
gi|300356792|gb|EFJ72662.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
gi|300404090|gb|EFJ87628.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
gi|300413045|gb|EFJ96355.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
gi|300418597|gb|EFK01908.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
gi|300456685|gb|EFK20178.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
gi|300838294|gb|EFK66054.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
gi|300846845|gb|EFK74605.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
gi|301074156|gb|EFK88962.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
gi|306909054|gb|EFN39550.1| cold-shock DNA-binding domain protein [Escherichia coli W]
gi|312946161|gb|ADR26988.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG
857C]
gi|315060858|gb|ADT75185.1| Qin prophage; cold shock protein [Escherichia coli W]
gi|315136199|dbj|BAJ43358.1| Qin prophage; cold shock protein [Escherichia coli DH1]
gi|315253260|gb|EFU33228.1| cold-shock DNA-binding domain protein [Escherichia coli MS 85-1]
gi|320197746|gb|EFW72354.1| Cold shock protein CspF [Escherichia coli EC4100B]
gi|320643976|gb|EFX13063.1| cold shock-like protein CspF [Escherichia coli O157:H- str.
493-89]
gi|320649405|gb|EFX17947.1| cold shock-like protein CspF [Escherichia coli O157:H- str. H
2687]
gi|320660404|gb|EFX27872.1| cold shock-like protein CspF [Escherichia coli O55:H7 str. USDA
5905]
gi|323156711|gb|EFZ42849.1| cold shock-like protein cspI [Escherichia coli EPECa14]
gi|323169850|gb|EFZ55506.1| cold shock-like protein cspI [Escherichia coli LT-68]
gi|323378571|gb|ADX50839.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
gi|323942037|gb|EGB38215.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli E482]
gi|323947933|gb|EGB43928.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli H120]
gi|323973800|gb|EGB68974.1| cold-shock DNA-binding domain-containing protein [Escherichia
coli TA007]
gi|324112034|gb|EGC06012.1| cold-shock DNA-binding domain-containing protein [Escherichia
fergusonii B253]
gi|331038944|gb|EGI11164.1| major cold shock protein Cspa1 [Escherichia coli H736]
gi|331071965|gb|EGI43301.1| major cold shock protein Cspa1 [Escherichia coli H591]
gi|332343267|gb|AEE56601.1| cold shock-like protein CspI [Escherichia coli UMNK88]
Length = 70
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV LH SA+ +T G V + +
Sbjct: 6 TGIVKTFDGKSGKGLITPSDGRI---DVQLHVSALNLRDAEEITTGLRVEFCRINGLRG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAANV 67
>gi|111223645|ref|YP_714439.1| hypothetical protein FRAAL4246 [Frankia alni ACN14a]
gi|111151177|emb|CAJ62888.1| hypothetical protein FRAAL4246 [Frankia alni ACN14a]
Length = 90
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY--DYVQND 60
RG ++ Y+ ++G+G I ++H S + G +L G+ VT+ + V N
Sbjct: 12 TRGVVRTYDAERGWGVIDAPEVPGG---CWVHYSMIEMDGYRDLVAGRQVTFRWEPVANQ 68
Query: 61 ANGKYSAENL 70
++ A +
Sbjct: 69 DGYRFRALTV 78
>gi|297520670|ref|ZP_06939056.1| major cold shock protein [Escherichia coli OP50]
Length = 26
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 4 RGSIKWYNPDKGYGFITPEGS 24
G +KW+N DKG+GFITP+
Sbjct: 6 TGIVKWFNADKGFGFITPDDG 26
>gi|281345132|gb|EFB20716.1| hypothetical protein PANDA_000327 [Ailuropoda melanoleuca]
Length = 168
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
+GFI E +F H V G+ L G V + + N GK SA N+
Sbjct: 57 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNV 107
>gi|302524815|ref|ZP_07277157.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302433710|gb|EFL05526.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length = 71
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M HRG + + D+G+G + S ++ H S + + G +LT G+ V + + +
Sbjct: 1 MEHRGKVVRWEVDEGWGILE---SPAVDGPIWAHFSMIEADGFRSLTAGEDVRFAVERAE 57
Query: 61 ANG-KYSAENLK 71
+G + A ++
Sbjct: 58 QDGCHWRAIRVR 69
>gi|29347294|ref|NP_810797.1| cold shock protein [Bacteroides thetaiotaomicron VPI-5482]
gi|253572828|ref|ZP_04850227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29339193|gb|AAO76991.1| cold shock protein, putative DNA-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|251837560|gb|EES65652.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 152
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG ++++N +G+GFI D F H + V ++EG +VT+D +
Sbjct: 86 RGRVEFFNEARGFGFIK---DLAGVDKYFFHVNNVVGN----ISEGNIVTFDLERGVKG- 137
Query: 64 KYSAENL 70
+A N+
Sbjct: 138 -MNAVNI 143
>gi|291514453|emb|CBK63663.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301]
Length = 148
Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G ++++ KGYGFI + F H + + + EG VT++ +
Sbjct: 87 GRVEYFTASKGYGFIK---DAAGSEKYFFHITNAPA----GIAEGDRVTFELERGTRG-- 137
Query: 65 YSAENLKL 72
+A + +
Sbjct: 138 MNAVRIVI 145
>gi|304378|gb|AAA18017.1| CCAAT-binding protein [Gallus gallus]
Length = 348
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYS 66
N GYG ++ +DVF+H++A+ L ++ +G+ V +D V+ +
Sbjct: 61 NVRNGYG---LMNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AE 115
Query: 67 AENLK 71
A N+
Sbjct: 116 AANVT 120
>gi|325106180|ref|YP_004275834.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
12145]
gi|324975028|gb|ADY54012.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
12145]
Length = 146
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G + + DKGYGFI + ++ +++F+H + + A + E VT+
Sbjct: 84 NTGVVTSFFSDKGYGFIKED---KTNENIFVHSNNLTEA----VKERDKVTFKKEMTPRG 136
Query: 63 GKYSAENLKLVP 74
Y+A ++ +
Sbjct: 137 --YAAIEVRKIK 146
>gi|325267434|ref|ZP_08134090.1| hypothetical protein HMPREF9098_1818 [Kingella denitrificans ATCC
33394]
gi|324981075|gb|EGC16731.1| hypothetical protein HMPREF9098_1818 [Kingella denitrificans ATCC
33394]
Length = 1351
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
+G IK N +K +GF+T E SG D+F H++ ++S L +L+ G V++ N
Sbjct: 303 KGKIKTINYEKKFGFVTQE----SGVDLFFHQNNLSSKLKLDSLSTGDEVSFVIGSNRQG 358
Query: 63 GKYSAENLKL 72
A+++ L
Sbjct: 359 --ECADDITL 366
>gi|290243061|ref|YP_003494731.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
K90mix]
gi|288945566|gb|ADC73264.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
K90mix]
Length = 188
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G+IKWY+ +KGYG++ +G + F V G + G V++ D G
Sbjct: 2 KGTIKWYSDEKGYGYVV----DPAGKERFFGAKHVQ--GTSTPSSGDSVSFKPGL-DRKG 54
Query: 64 KYSAENLKLVPKSS 77
A ++++ +
Sbjct: 55 APIARSIQIHARGP 68
>gi|221119228|ref|XP_002164427.1| PREDICTED: similar to upstream of NRAS, partial [Hydra
magnipapillata]
Length = 456
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI + ++F H S + L G V Y+ + GK +A N+K +P
Sbjct: 221 FGFIERADTVA---EIFFHYSEFKDD-INELLIGDDVEYELQE--RAGKETAVNIKKLPT 274
Query: 76 SS 77
+
Sbjct: 275 GT 276
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 2 VHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+G + K N YGF+ + VF H S L G + + +
Sbjct: 45 REKGVVEKLLNS---YGFLECSSTNY---RVFFHYSEYDGDPNK-LVVGDCMEFLLTTDH 97
Query: 61 ANGKYSAENLKLVPKSS 77
N K A NL +P S
Sbjct: 98 RNNKPLAVNLSKLPSGS 114
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 46 LTEGQLVTYDYVQNDANGKYSAENLKLVP 74
L +G +V ++ + + A N+KL+
Sbjct: 335 LQKGDIVEFNVSTDRRDKLQRAVNIKLIS 363
>gi|218709272|ref|YP_002416893.1| hypothetical protein VS_1279 [Vibrio splendidus LGP32]
gi|218322291|emb|CAV18421.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
Length = 155
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
G I + ++G+GFI + D+F+H S G + G V +
Sbjct: 2 NGKIVRWVDERGFGFINSDELKG---DIFVHISKFRK-GYRSPKVGDSVEFQ 49
>gi|145284606|gb|ABP52050.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 27
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI PE GDDVF+H
Sbjct: 1 GRVKWFNNAKGFGFICPES---GGDDVFVH 27
>gi|330959678|gb|EGH59938.1| cold shock domain-containing protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 268
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + + KGYGFI+ + G+ F+H+ V G LT GQ V + + K
Sbjct: 13 GEVVSFVVSKGYGFISGDD----GERYFVHQKDVQ--GGETLTSGQRVAFVPTPSPKGSK 66
>gi|323137019|ref|ZP_08072099.1| Cold-shock protein, DNA-binding [Methylocystis sp. ATCC 49242]
gi|322397780|gb|EFY00302.1| Cold-shock protein, DNA-binding [Methylocystis sp. ATCC 49242]
Length = 186
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGF+ G +++ HR++V A +L G V++ + A L +
Sbjct: 130 GYGFLESAD----GREIYFHRNSVQDADFDDLKPGMRVSFKEEEGKDG--PQASRLSPIG 183
Query: 75 KS 76
+
Sbjct: 184 RE 185
>gi|320353127|ref|YP_004194466.1| Excalibur domain-containing protein [Desulfobulbus propionicus
DSM 2032]
gi|320121629|gb|ADW17175.1| Excalibur domain protein [Desulfobulbus propionicus DSM 2032]
Length = 186
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++ +N ++G+G ITP G D+ + + G + +++ + D
Sbjct: 1 MHTEGTLTKWNSERGFGLITP---RRGGQDIAVQAADFPQDGCP-PQLNERLSFSI-ETD 55
Query: 61 ANGKYSAENL 70
A GK A+N+
Sbjct: 56 AGGKRWAKNV 65
>gi|89514265|gb|ABD74995.1| putative cold shock transcription regulator protein
[Sinorhizobium kostiense]
Length = 29
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
+ G++K++N DKG+GFI PE G D+F+
Sbjct: 1 METGTVKFFNTDKGFGFIKPEN---GGADIFV 29
>gi|170727762|ref|YP_001761788.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|169813109|gb|ACA87693.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
Length = 276
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++ + DKG+GFI E DVF+H S ++ EG ++ + + ++G
Sbjct: 7 KGTLVRWKDDKGFGFIQAEPEL--DRDVFIHASTLSHMSRR-PKEGDIIYFQL-ERKSDG 62
Query: 64 KYSAEN 69
K++A
Sbjct: 63 KFNAVE 68
>gi|146344254|ref|YP_001202110.1| cold shock domain-contain protein [Pseudomonas fluorescens SBW25]
gi|146188066|emb|CAM96396.1| putative cold shock domain transmembrane protein [Pseudomonas
fluorescens SBW25]
Length = 282
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + + KGYGFI+ + G+ F+H+ V G LT GQ VT+ + K
Sbjct: 27 GEVISFVASKGYGFISGDD----GERYFVHQKDVK--GGEPLTSGQRVTFVPTPSPKGSK 80
>gi|293392427|ref|ZP_06636749.1| cold-shock DNA-binding domain protein [Serratia odorifera DSM
4582]
gi|291425081|gb|EFE98288.1| cold-shock DNA-binding domain protein [Serratia odorifera DSM
4582]
Length = 163
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I + DKG+GFIT E + + + + VT++ N
Sbjct: 3 MTMNGKITTFFEDKGFGFITDENGEN------RYFHVIKVQNPELIKKNAAVTFEPTNNA 56
Query: 61 ANGKYSAENLKLVPKS 76
SA +K++ S
Sbjct: 57 KG--PSAFAVKVLAPS 70
>gi|146310755|ref|YP_001175829.1| cold-shock DNA-binding domain-containing protein [Enterobacter
sp. 638]
gi|145317631|gb|ABP59778.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
Length = 161
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+I + DKG+GFI E + + A + + VT++ N+
Sbjct: 1 MAMNGTITTWFEDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTNN 54
Query: 61 ANGKYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 55 KG--LSAFAVKVLPES 68
>gi|115733035|ref|XP_789065.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115950422|ref|XP_001190119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 825
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG YGF+ + G +F H S V + + G V + + N + SA N
Sbjct: 719 DSIKGQYGFLDYDTG--DGKKLFFHMSEVINGDVHT---GDDVEFVLITNQRTSRQSAVN 773
Query: 70 LKLV 73
++ V
Sbjct: 774 VRKV 777
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 25 TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
SG+ FL S + + + +G V + + NG A NL+L+ +
Sbjct: 168 EISGESFFLMYSYEDAPEVPAIKKGDKVAFQVATDKRNGNMQARNLRLLESA 219
Score = 40.4 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI + + ++F H S L +L G V+Y V K SAE +K V
Sbjct: 568 FGFIESD---KRDKEIFFHFSEFHGD-LNDLDVGYEVSYIAV--RKGPKLSAEEVKKVQA 621
Query: 76 S 76
Sbjct: 622 G 622
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGF+ +F H S + L G V ++ + + GK A + +P
Sbjct: 72 YGFLQCCDR---DGRLFFHYSHFEG-PIDTLHIGDPVEFEMISDRRTGKPIASRIMRLPP 127
Query: 76 S 76
Sbjct: 128 G 128
Score = 36.9 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
GFIT ++G V + A + G LV ++ + +G A N+ ++ +S
Sbjct: 496 GFITY---GQNGSRVNIAFHAKDTDVKVPPAIGDLVEFNVAEIKKDGSRMAVNINVLNRS 552
Query: 77 SN 78
S+
Sbjct: 553 SD 554
>gi|209694996|ref|YP_002262925.1| cold-shock protein [Aliivibrio salmonicida LFI1238]
gi|208008948|emb|CAQ79171.1| cold-shock protein [Aliivibrio salmonicida LFI1238]
Length = 176
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++W + KG+GFI + VF H S G G V + +GK
Sbjct: 5 VVRWIDN-KGFGFIRGNDPDNDNE-VFAHISQFKK-GYRRPRVGDEVVFLI--GYEDGKK 59
Query: 66 SAENLKLV 73
A + L+
Sbjct: 60 VANTISLI 67
>gi|91225301|ref|ZP_01260469.1| hypothetical protein V12G01_21078 [Vibrio alginolyticus 12G01]
gi|91189940|gb|EAS76212.1| hypothetical protein V12G01_21078 [Vibrio alginolyticus 12G01]
Length = 155
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++W + ++G+GFI S E D+F+H S G G V + K
Sbjct: 5 IVRWVD-ERGFGFI---NSNELDGDIFVHVSKFKK-GYRRPRIGDQVEFQLASVQ--PKL 57
Query: 66 SAENLKLV 73
SAE+ +LV
Sbjct: 58 SAESAQLV 65
>gi|145284588|gb|ABP52041.1| cold shock protein [Psychrobacter sp. BJ3]
Length = 27
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N +KG+GFI P+ DVF+H
Sbjct: 1 GQVKWFNAEKGFGFIAPDS---GDPDVFVH 27
>gi|5714743|gb|AAD48060.1|AF171925_1 cold shock protein A [Rhodococcus sp. 5/14]
Length = 57
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
+WYN DKG+G ITP+ D F+H +A+ S
Sbjct: 3 RWYNADKGFGCITPDD---GSKDCFVHFTALRSE 33
>gi|62179824|ref|YP_216241.1| cold shock protein-like protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224584247|ref|YP_002638045.1| cold shock protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|62127457|gb|AAX65160.1| cold shock protein-like protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224468774|gb|ACN46604.1| putative cold shock protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714290|gb|EFZ05861.1| cold shock protein-like protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 70
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV +H S+ L G V + +
Sbjct: 6 TGIVKTFDCKSGKGLITPSD---GRKDVQVHISSCRQHETEALIPGIRVEFCRINGLRGP 62
>gi|221069417|ref|ZP_03545522.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
KF-1]
gi|220714440|gb|EED69808.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
KF-1]
Length = 224
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
M + G++ +N ++G+G+I +G G+ +F+H SA G + +
Sbjct: 1 MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEPRPPAEQRPQPGLRLEFAVGM 57
Query: 59 NDANGKYSAENL 70
G+ A +
Sbjct: 58 EQ--GRKRALQV 67
>gi|291394305|ref|XP_002713505.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
Length = 301
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 18 FITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLK 71
FI + +DVF+H++A+ L ++ +G+ V +D V+ + A N+
Sbjct: 51 FINRNDTK---EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AEAANVT 103
>gi|323498541|ref|ZP_08103534.1| hypothetical protein VISI1226_09719 [Vibrio sinaloensis DSM
21326]
gi|323316430|gb|EGA69448.1| hypothetical protein VISI1226_09719 [Vibrio sinaloensis DSM
21326]
Length = 201
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G+I ++ KGYG+I + A L V + ++D
Sbjct: 1 MAIQGTISEWDQHKGYGYIAVDDQEAQIRFHLFDFEAFGHP--PQLR--DRVQFRLAKDD 56
Query: 61 ANGKYSAENLK 71
G+ A +++
Sbjct: 57 Q-GELRAVHVE 66
>gi|149573030|ref|XP_001520218.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
Length = 502
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 5 GSIKWYNPDKGYGFITP 21
G++KW+N GYGFI
Sbjct: 63 GTVKWFNVRNGYGFINR 79
>gi|166712861|ref|ZP_02244068.1| cold shock domain protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 191
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++ +N D G+GF + GDD+F+H SA G G +++++ + D
Sbjct: 1 MRAHGTLTRWNTDPGFGF---FPPAQPGDDLFVHLSAFPR-GFEAPRIGGVLSFE-TEPD 55
Query: 61 ANGKYSAENLKLVPKSS 77
+G+ A +++V +
Sbjct: 56 TDGRTRA--VRIVRAGT 70
>gi|291617368|ref|YP_003520110.1| Hypothetical Protein PANA_1815 [Pantoea ananatis LMG 20103]
gi|291152398|gb|ADD76982.1| Hypothetical Protein PANA_1815 [Pantoea ananatis LMG 20103]
gi|327393809|dbj|BAK11231.1| putative cold-shock protein [Pantoea ananatis AJ13355]
Length = 160
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+I + DKG+GFI E + + A + + VT++ N+
Sbjct: 1 MAMNGTITTWFQDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTNN 54
Query: 61 ANGKYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 55 KG--LSAFAVKVLPES 68
>gi|17547421|ref|NP_520823.1| cold shock-like transcription regulator protein [Ralstonia
solanacearum GMI1000]
gi|17429724|emb|CAD16409.1| probable cold shock-like transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 54
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 22 EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+ G+D+F H S + G+ +L EGQ V Y +A ++ V
Sbjct: 5 DSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHYVVGVGQNG--PTATKIEPV 54
>gi|196051124|gb|ACG68730.1| cold shock protein [uncultured bacterium]
Length = 36
Score = 43.1 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
VF+H A+ G +LTEGQ V Y V+
Sbjct: 5 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG 36
>gi|91202775|emb|CAJ72414.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 176
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P++GYGFIT G +++ H+++V + L +G V + + A +L
Sbjct: 121 PEEGYGFITSAD----GREIYFHKNSVLNHDFARLEKGMEVRFSEELGEKG--PQASSLT 174
Query: 72 L 72
+
Sbjct: 175 V 175
>gi|309790908|ref|ZP_07685450.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6]
gi|308227022|gb|EFO80708.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6]
Length = 190
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G I + D+GYGFITP+ G DVFLH S + + L ++Y + D +
Sbjct: 6 GKITMWKEDRGYGFITPD---HGGPDVFLHASILPNE-LKQPPLQTEISY-VIGYDKQNR 60
Query: 65 YSAENLK 71
A ++
Sbjct: 61 PRAVAVR 67
>gi|321479102|gb|EFX90058.1| hypothetical protein DAPPUDRAFT_309815 [Daphnia pulex]
Length = 947
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + +L G V ++ + NGK A ++ +
Sbjct: 154 YGFIQ---CCERQARLFFHFSQFDGN-IEHLKIGDPVEFEVTYDRRNGKPIASSVSKIAP 209
Query: 76 S 76
Sbjct: 210 E 210
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+ KG +GF+ E E G +F H S V L V + + N GK SA N
Sbjct: 820 DAIKGQFGFLNYE--MEDGKKLFFHLSEVKDN--ATLLPNDTVEFVLITNQRTGKSSACN 875
Query: 70 LKLVPK 75
+ +
Sbjct: 876 IVKMET 881
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENLKLVP 74
+GFI + ++F H S +L G V Y + ++GK SAEN+KL+
Sbjct: 667 FGFIE---NLSHDKEIFFHYSHFDGDA-DSLDLGHEVQYTLTGKTPSSGKISAENVKLLK 722
Query: 75 KSS 77
K +
Sbjct: 723 KGT 725
Score = 36.9 bits (85), Expect = 0.96, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAENL 70
+GYGFI E VF H S V S ++ + V + Q+ K SA +
Sbjct: 466 VKEGYGFIKCA---ERDARVFFHFSEVISLD-EDVDQNSEVEFTMSQDQTQPNKQSAVRI 521
Query: 71 KLVPKSS 77
K++P S
Sbjct: 522 KVLPPGS 528
>gi|256786238|ref|ZP_05524669.1| cold shock protein [Streptomyces lividans TK24]
Length = 33
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
G L EGQ V ++ Q A+ ++L
Sbjct: 1 MDGYRTLEEGQRVEFEISQGQKG--PQADMVRL 31
>gi|195375638|ref|XP_002046607.1| GJ12391 [Drosophila virilis]
gi|194153765|gb|EDW68949.1| GJ12391 [Drosophila virilis]
Length = 1040
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 359 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNI 413
Query: 71 KLVPKSS 77
+P S
Sbjct: 414 TRLPPGS 420
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 200 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 255
Query: 76 S 76
Sbjct: 256 E 256
>gi|145537626|ref|XP_001454524.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422290|emb|CAK87127.1| unnamed protein product [Paramecium tetraurelia]
Length = 360
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44
G +K+++ K YGFI + DVF+H + AG+
Sbjct: 265 RETGKLKFFDEQKSYGFIVLDS---DNSDVFVHLDDLQRAGIT 304
>gi|158293681|ref|XP_315026.4| AGAP004937-PA [Anopheles gambiae str. PEST]
gi|157016564|gb|EAA10499.5| AGAP004937-PA [Anopheles gambiae str. PEST]
Length = 959
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND--ANGKYSA 67
+ KG +GF+ + + G +F H S V G NL G V + V N NGK SA
Sbjct: 839 DSIKGQFGFL--DFEVDEGKKLFFHMSDVQ--GNVNLYLGDTVEFSIVTNQASRNGKTSA 894
Query: 68 ENLKLVPKS 76
N+ + +
Sbjct: 895 CNVVKINDA 903
Score = 42.3 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S + L G V + + +GK A N+ +P
Sbjct: 288 FGFIERADVV---KEIFFHFS--EADNTIELRPGDDVEFIIQTRNVSGKEVACNIARLPP 342
Query: 76 SS 77
S
Sbjct: 343 GS 344
Score = 40.8 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + +L G V ++ + GK A + +
Sbjct: 123 YGFIQ---CCERQARLFFHFSQF-GGNIEHLKIGDPVEFEMTYDRRTGKPIASQVTKIAP 178
Query: 76 S 76
Sbjct: 179 E 179
>gi|145284582|gb|ABP52038.1| cold shock protein [Psychrobacter sp. BJ3]
Length = 27
Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N +KG+GFI P+ DVF+H
Sbjct: 1 GLVKWFNAEKGFGFIAPDS---GDPDVFVH 27
>gi|93005230|ref|YP_579667.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
cryohalolentis K5]
gi|92392908|gb|ABE74183.1| cold-shock DNA-binding domain protein [Psychrobacter
cryohalolentis K5]
Length = 223
Score = 43.1 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G + + DKG+GFI E G+ VF H SA + G+ V + ++
Sbjct: 9 QQGRVTKWQDDKGFGFIETEA----GESVFFHVSAFKAQ--RRPVIGEEVVFIVGYDNQR 62
Query: 63 GKYSAENLKLVP 74
+ A+ ++ +
Sbjct: 63 -RLQAKEVQELS 73
>gi|260551019|ref|ZP_05825224.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
gi|260405967|gb|EEW99454.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
sp. RUH2624]
Length = 97
Score = 43.1 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K YN DKG+GFI+ + D+F H S ++ + V + N GK
Sbjct: 8 GRVKQYNADKGFGFIS-----TTEGDIFFHISDFPASE-GEPKRNEKVRFLAADNQ--GK 59
Query: 65 YSAENLKLVPKSS 77
+ A ++ V +
Sbjct: 60 FKAIKIERVDPNP 72
>gi|300864970|ref|ZP_07109802.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300337026|emb|CBN54952.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 187
Score = 43.1 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
IKW N D+G+GFI P + G +VFLH SAV + G G + Y + +GK+
Sbjct: 11 IKW-NDDRGFGFIKP---SAGGREVFLHISAVKTKGRR-PKIGDTIFYKLTRGT-DGKFC 64
Query: 67 AENLKL 72
A + +
Sbjct: 65 ASDASI 70
>gi|145284604|gb|ABP52049.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 27
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI PE GDDVF+H
Sbjct: 1 GQVKWFNNAKGFGFICPES---GGDDVFVH 27
>gi|50084245|ref|YP_045755.1| putative cold shock protein [Acinetobacter sp. ADP1]
gi|49530221|emb|CAG67933.1| putative cold shock protein [Acinetobacter sp. ADP1]
Length = 97
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G IK Y+ KG+GFI DVF H S + V + V+N N
Sbjct: 6 YQGKIKQYDATKGFGFI-----GGLEQDVFFHISDFPLEE-GEPKRNERVKFMVVEN--N 57
Query: 63 GKYSAENLKLV 73
GK+ A ++ V
Sbjct: 58 GKFKAVKIQRV 68
>gi|332160846|ref|YP_004297423.1| hypothetical protein YE105_C1224 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325665076|gb|ADZ41720.1| hypothetical protein YE105_C1224 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 159
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|170725465|ref|YP_001759491.1| cold-shock DNA-binding domain-containing protein [Shewanella
woodyi ATCC 51908]
gi|169810812|gb|ACA85396.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
51908]
Length = 203
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
M +G + ++ KG+GFI P G VF+H + L VT+ +
Sbjct: 1 MKFKGKLVQWDDVKGFGFIQPLGQQTQ---VFVHIKSFKYQPRRPQLQ--DTVTFTLTK- 54
Query: 60 DANGKYSAENLKLVPKSS 77
D G+ +A K++ +
Sbjct: 55 DKQGRETAHQAKIIDAKA 72
>gi|285005772|ref|YP_001007202.2| hypothetical protein YE3013 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604748|emb|CBY26246.1| putative cold-shock protein [Yersinia enterocolitica subsp.
palearctica Y11]
gi|330863375|emb|CBX73497.1| unknown protein [Yersinia enterocolitica W22703]
Length = 159
Score = 42.7 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|188533190|ref|YP_001906987.1| Putative cold-shock protein [Erwinia tasmaniensis Et1/99]
gi|188028232|emb|CAO96090.1| Putative cold-shock protein [Erwinia tasmaniensis Et1/99]
Length = 160
Score = 42.7 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
SA +K+ P+S
Sbjct: 54 SKG--LSAYAVKVAPES 68
>gi|124505825|ref|XP_001351026.1| cold-shock protein, putative [Plasmodium falciparum 3D7]
gi|23510669|emb|CAD49054.1| cold-shock protein, putative [Plasmodium falciparum 3D7]
Length = 150
Score = 42.7 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++ ++ KGYGFI P G D+F+H + + Q T++ +
Sbjct: 31 TGNVIMFDKRKGYGFIKPND---GGPDIFVHYTDIC----------QSRTFEVTNEEKKK 77
>gi|17549275|ref|NP_522615.1| hypothetical protein RS02391 [Ralstonia solanacearum GMI1000]
gi|17431527|emb|CAD18205.1| putative cold shock activator transcription regulator protein
[Ralstonia solanacearum GMI1000]
Length = 68
Score = 42.7 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
T + F+ S + L L EGQ V++D V +G+ A N+K +
Sbjct: 16 TGAATDTEAAPCFIRDSEIQLLRLQRLHEGQRVSFDVVMGP-DGEPIAVNIKPI 68
>gi|313231855|emb|CBY08967.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G++ ++ KG+GF+ + E G F H S V S + EG +V Y +
Sbjct: 115 GTVSAFSRTKGHGFLNSD---EDGKQEFFHVSDVVSQIVP--KEGDVVKYRVIPIPPKYE 169
Query: 64 KYSAENLKLVPKS 76
KY A + ++ +
Sbjct: 170 KYQAVQVTIMNEE 182
>gi|259907746|ref|YP_002648102.1| cold-shock protein [Erwinia pyrifoliae Ep1/96]
gi|224963368|emb|CAX54854.1| cold-shock protein [Erwinia pyrifoliae Ep1/96]
gi|310764747|gb|ADP09697.1| cold-shock protein [Erwinia sp. Ejp617]
Length = 160
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
SA +K+ P+S
Sbjct: 54 TKG--LSAYAVKVAPES 68
>gi|218248953|ref|YP_002374324.1| hypothetical protein PCC8801_4244 [Cyanothece sp. PCC 8801]
gi|257062039|ref|YP_003139927.1| hypothetical protein Cyan8802_4306 [Cyanothece sp. PCC 8802]
gi|218169431|gb|ACK68168.1| protein of unknown function DUF88 [Cyanothece sp. PCC 8801]
gi|256592205|gb|ACV03092.1| protein of unknown function DUF88 [Cyanothece sp. PCC 8802]
Length = 299
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 8 KWYNPDK---------GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
K ++ +K GYGFI +++F H + + +L +G V +
Sbjct: 228 KTFSSEKSEIISLQPGGYGFI-----KYPPNNLFFHFTDLVDVDFNDLEKGMKVEFSRGT 282
Query: 59 NDANGKYSAENLKLV 73
ND G+ A+N+K +
Sbjct: 283 NDR-GETVAKNVKPL 296
>gi|162418309|ref|YP_001606346.1| cold-shock DNA-binding domain-containing protein [Yersinia pestis
Angola]
gi|162351124|gb|ABX85072.1| cold-shock DNA-binding domain protein [Yersinia pestis Angola]
Length = 159
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|258544720|ref|ZP_05704954.1| cold-shock DNA-binding domain protein [Cardiobacterium hominis
ATCC 15826]
gi|258520039|gb|EEV88898.1| cold-shock DNA-binding domain protein [Cardiobacterium hominis
ATCC 15826]
Length = 226
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++G I +N +KGYGFI +++F H S + VT V
Sbjct: 22 YQGRIINWNDEKGYGFIQ---LMPGHENLFFHISTF-AYHHRRPAADTAVTVLAVPGQKG 77
Query: 63 GKYSAENL 70
G + A +
Sbjct: 78 G-WQASRV 84
>gi|238785728|ref|ZP_04629702.1| Cold-shock DNA-binding domain protein [Yersinia bercovieri ATCC
43970]
gi|238713368|gb|EEQ05406.1| Cold-shock DNA-binding domain protein [Yersinia bercovieri ATCC
43970]
Length = 159
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|218512161|ref|ZP_03509001.1| cold shock protein [Rhizobium etli 8C-3]
Length = 37
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
AV AG+ +L +GQ ++YD V+++ +GK SA+ L+
Sbjct: 1 AVERAGMRDLKDGQKLSYDLVRDNKSGKMSADRLQ 35
>gi|157145107|ref|YP_001452426.1| hypothetical protein CKO_00840 [Citrobacter koseri ATCC BAA-895]
gi|157082312|gb|ABV11990.1| hypothetical protein CKO_00840 [Citrobacter koseri ATCC BAA-895]
Length = 157
Score = 42.7 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+I W+ DKG+GFI E + + A + + VT++ N+
Sbjct: 2 NGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTNNKG 54
Query: 63 GKYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 55 --LSAYAVKVIPES 66
>gi|219119668|ref|XP_002180589.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408062|gb|EEC47997.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1240
Score = 42.7 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 12 PDKGYGFITPEGSTESGDDV-FLHRSAVASAGLFN------------LTEGQLVTYDYVQ 58
P + +GFI+ + ++ F + S+V A + +G V +D
Sbjct: 929 PARQFGFISVLDDNAAKREILFFNLSSVLGASPETESTAPANKKKALIRKGDEVKFDIG- 987
Query: 59 NDANGKYSAENLKLVPKSS 77
+ NGK A N+ ++PK +
Sbjct: 988 TEKNGKRVALNVTVLPKET 1006
>gi|170025253|ref|YP_001721758.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|186894464|ref|YP_001871576.1| cold-shock DNA-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|169751787|gb|ACA69305.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis YPIII]
gi|186697490|gb|ACC88119.1| cold-shock DNA-binding domain protein [Yersinia
pseudotuberculosis PB1/+]
Length = 159
Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKGAEVTFEPTTNTKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|283786462|ref|YP_003366327.1| cold-shock protein [Citrobacter rodentium ICC168]
gi|282949916|emb|CBG89541.1| putative cold-shock protein [Citrobacter rodentium ICC168]
Length = 160
Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+I + DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWFKDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTANS 54
Query: 61 ANGKYSAENLKLVPKS 76
SA +K++P S
Sbjct: 55 KG--LSAYAVKVIPDS 68
>gi|257461355|ref|ZP_05626451.1| cold-shock DNA-binding domain protein [Campylobacter gracilis
RM3268]
gi|257441078|gb|EEV16225.1| cold-shock DNA-binding domain protein [Campylobacter gracilis
RM3268]
Length = 260
Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS+K + DKG+GFIT + G + F H++ + +A + + G V +
Sbjct: 7 GSVKKFFLDKGFGFITDDD----GVEYFFHKNDILNAKIAS---GDFVLFKPSVGPKG-- 57
Query: 65 YSAENLKLVP 74
A+ + LV
Sbjct: 58 SIAKQISLVS 67
>gi|195171040|ref|XP_002026319.1| GL24571 [Drosophila persimilis]
gi|194111214|gb|EDW33257.1| GL24571 [Drosophila persimilis]
Length = 990
Score = 42.7 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-----DANGKYSAENL 70
+GFI ++F H S + G L G V + G+ A N+
Sbjct: 338 FGFIERADVV---KEIFFHFS--EAEGNVELRPGDDVEFTIQTRSSATVPPQGREFACNI 392
Query: 71 KLVPKSS 77
+P S
Sbjct: 393 TRLPPGS 399
Score = 41.2 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI E +F H S + + +L G V ++ + GK A + +
Sbjct: 190 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 245
Query: 76 S 76
Sbjct: 246 E 246
>gi|145284586|gb|ABP52040.1| cold shock protein [Psychrobacter sp. BJ3]
gi|145284602|gb|ABP52048.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 27
Score = 42.7 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G++KW+N KG+GFI + G DVF+H
Sbjct: 1 GTVKWFNEAKGFGFIAQDN---GGQDVFVH 27
>gi|309359008|emb|CAP33297.2| CBR-CEY-2 protein [Caenorhabditis briggsae AF16]
Length = 265
Score = 42.7 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
+G +KWY+ + YGFI+ D+F+H++A+A +
Sbjct: 62 QGKVKWYSVLRRYGFISRNDGE---KDIFVHQTAIAKS 96
>gi|293609127|ref|ZP_06691430.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829700|gb|EFF88062.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 97
Score = 42.7 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +K YNPDKG+GFI + D+F H S ++ + V + N
Sbjct: 6 YTGWVKQYNPDKGFGFI-----ETTEGDIFFHISDFPASE-GEPKRNEKVRFLAADNQ-- 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ V +
Sbjct: 58 GKFKAIKIERVDPNP 72
>gi|148232804|ref|NP_001080597.1| calcium regulated heat stable protein 1, 24kDa [Xenopus laevis]
gi|27696469|gb|AAH44047.1| Carhsp1-prov protein [Xenopus laevis]
Length = 100
Score = 42.3 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
++G K ++ KG+GFITPE G D+FLH S
Sbjct: 69 YKGVCKSFSRSKGHGFITPED---GGPDIFLHISE 100
>gi|332972991|gb|EGK10931.1| cold-shock DNA-binding domain protein [Kingella kingae ATCC
23330]
Length = 280
Score = 42.3 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G IK +N + +GFI T VF H A+ S + + G+ V VQN+
Sbjct: 7 KGKIKSWNAECAFGFIE----TTDKKQVFFHIDALQSPQIKPIV-GETVQLLAVQNEKGW 61
Query: 64 KYSAE 68
K +A
Sbjct: 62 KATAV 66
Score = 37.7 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61
+G I ++ D+G+GFI + +F H + ++ + G F EG+ V +
Sbjct: 84 TQGKIIKWDDDRGFGFIQIPNMK---EQIFFHANDLSLNQGKFRPQEGEAVLVKAKHDGK 140
Query: 62 NGKYSAENLK 71
+++A +
Sbjct: 141 --RWTATVVT 148
>gi|262375196|ref|ZP_06068430.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
lwoffii SH145]
gi|262310209|gb|EEY91338.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
lwoffii SH145]
Length = 208
Score = 42.3 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M +G ++W++ GYGFI P + VFLH A G + G + Y + +
Sbjct: 1 MRDQGRLVEWFDDQ-GYGFIQPSDPAKD--RVFLHIKDFAKPGPRPIV-GCALDYLVILD 56
Query: 60 DANGKYSAENL 70
+ G+Y A+ +
Sbjct: 57 ER-GRYRAQQV 66
>gi|261344628|ref|ZP_05972272.1| putative cold-shock protein [Providencia rustigianii DSM 4541]
gi|282567544|gb|EFB73079.1| putative cold-shock protein [Providencia rustigianii DSM 4541]
Length = 160
Score = 42.3 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
W+ +KG+GFI E + + + + + VT++ N SA
Sbjct: 8 WF-EEKGFGFIKDENGDN------RYFHVIKVSNPDLIKKDAAVTFEPTTNTKG--LSAY 58
Query: 69 NLKLVPKS 76
+K++P+S
Sbjct: 59 AVKVIPES 66
>gi|76803990|gb|ABA55933.1| cold shock domain family protein [Vibrio sp. DAT722]
Length = 155
Score = 42.3 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
++W + ++G+GFI S E D+F+H S G G V + K
Sbjct: 5 IVRWVD-ERGFGFI---NSNELDGDIFVHVSKFKK-GYRRPRIGDQVEFQLASVH--PKL 57
Query: 66 SAENLKLV 73
SAE+ +LV
Sbjct: 58 SAESAQLV 65
>gi|320352876|ref|YP_004194215.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
DSM 2032]
gi|320121378|gb|ADW16924.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
DSM 2032]
Length = 180
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
YGFI + DVF H +A+ + +L EG V + + D A +++
Sbjct: 127 YGFIVTDDKL----DVFFHANALKDVTINDLAEGDEVLFAMEEGDKG--LQATWVRV 177
>gi|319898508|ref|YP_004158601.1| cold shock protein y4cH [Bartonella clarridgeiae 73]
gi|319402472|emb|CBI76015.1| putative cold shock protein y4cH (fragment) [Bartonella
clarridgeiae 73]
Length = 42
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
MV G +K++N +K + FI P D+F+H S V +GL
Sbjct: 1 MVQTGEVKFFNNNKDFDFIKPNN---GNTDIFVHISDVQVSGLTE 42
>gi|302846704|ref|XP_002954888.1| hypothetical protein VOLCADRAFT_95711 [Volvox carteri f.
nagariensis]
gi|300259863|gb|EFJ44087.1| hypothetical protein VOLCADRAFT_95711 [Volvox carteri f.
nagariensis]
Length = 455
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI DVF H S++ L +EG VT+ +++ GK A ++L P
Sbjct: 19 FGFIA---CPHRVHDVFFHESSLEDCSLEQFSEGTAVTF-ILEHVNGGKPVATRVRLAPI 74
Query: 76 SS 77
+
Sbjct: 75 GT 76
>gi|297518568|ref|ZP_06936954.1| cold shock protein CspE [Escherichia coli OP50]
Length = 31
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES 27
+G++KW+N KG+GFITPE ++
Sbjct: 5 KGNVKWFNESKGFGFITPEDGSKD 28
>gi|163847405|ref|YP_001635449.1| hypothetical protein Caur_1843 [Chloroflexus aurantiacus J-10-fl]
gi|222525254|ref|YP_002569725.1| cold-shock DNA-binding domain-containing protein [Chloroflexus
sp. Y-400-fl]
gi|163668694|gb|ABY35060.1| protein of unknown function DUF1294 [Chloroflexus aurantiacus
J-10-fl]
gi|222449133|gb|ACM53399.1| cold-shock DNA-binding domain protein [Chloroflexus sp. Y-400-fl]
Length = 190
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
H+G I + DKGYGFI D VF H + + VTY +D
Sbjct: 4 RHKGKIVVWKDDKGYGFIESAN---GRDRVFFHIRHL-ADRQRRPELNTSVTYALGNDDK 59
Query: 62 NGKYSAENLK 71
G+ A +++
Sbjct: 60 -GRVQAIDVR 68
>gi|162453873|ref|YP_001616240.1| cold shock protein [Sorangium cellulosum 'So ce 56']
gi|161164455|emb|CAN95760.1| cold shock protein [Sorangium cellulosum 'So ce 56']
Length = 191
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
K +N YGFIT T G +++ H ++ SA +L G V Y + D + A
Sbjct: 119 KLFND---YGFIT----TIDGREIYFHERSIVSAPFSDLRVGMGVAY--TEEDGDEGPQA 169
Query: 68 ENLKLVPK 75
++++V
Sbjct: 170 SSVRVVDA 177
>gi|161618395|ref|YP_001592282.1| cold shock protein [Brucella canis ATCC 23365]
gi|161335206|gb|ABX61511.1| cold shock protein [Brucella canis ATCC 23365]
Length = 36
Score = 42.3 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 38 VASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
+ AGL +L EGQ V Y+ V + +GK +A NL+
Sbjct: 1 MERAGLHSLVEGQKVGYEVVADRRSGKSAAANLE 34
>gi|145345223|ref|XP_001417116.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577343|gb|ABO95409.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 597
Score = 42.3 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI D+F H S + + GQ V++ GK A ++ PK
Sbjct: 278 YGFIK---CCSRPKDLFFHFSELNED-VDAARTGQEVSFQVTTEPRTGKVVAAGVRFAPK 333
Query: 76 SS 77
S
Sbjct: 334 GS 335
Score = 34.6 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G + D YGF+ A G L G + Y
Sbjct: 428 MRFTGKVTSTKSDGLYGFVEHVDQGTGVQGKAFVHGA-EVEGQSKLNVGDELEYALQVGR 486
Query: 61 ANGKYSAENLKLVPKSS 77
+++A+ +K+V +
Sbjct: 487 KADEFAAKRVKVVVAAP 503
>gi|300694070|ref|YP_003750043.1| cold shock activator transcription regulator protein [Ralstonia
solanacearum PSI07]
gi|299076107|emb|CBJ35418.1| putative cold shock activator transcription regulator protein
[Ralstonia solanacearum PSI07]
Length = 68
Score = 42.3 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
T + F+ S + +GL EGQ V++D V +G+ A N+K +
Sbjct: 16 TGAATDTEAAPCFIRDSEIQLSGLQRFYEGQRVSFDVVMGP-DGELIAVNIKPI 68
>gi|325121095|gb|ADY80618.1| hypothetical protein BDGL_000032 [Acinetobacter calcoaceticus
PHEA-2]
Length = 97
Score = 42.3 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G +K YN DKG+GFI + D+F H S ++ + V + N
Sbjct: 6 YTGWVKQYNADKGFGFI-----ETTEGDIFFHISDFPASE-GEPKRNEKVRFLAADNQ-- 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ V +
Sbjct: 58 GKFKAIKIERVDPNP 72
>gi|238758049|ref|ZP_04619230.1| Cold-shock DNA-binding domain protein [Yersinia aldovae ATCC
35236]
gi|238703803|gb|EEP96339.1| Cold-shock DNA-binding domain protein [Yersinia aldovae ATCC
35236]
Length = 159
Score = 42.3 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + +G VT++ N
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHIIKVANPEMIKKGAEVTFEPTTNTKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|167752758|ref|ZP_02424885.1| hypothetical protein ALIPUT_01019 [Alistipes putredinis DSM 17216]
gi|167659827|gb|EDS03957.1| hypothetical protein ALIPUT_01019 [Alistipes putredinis DSM 17216]
Length = 146
Score = 42.3 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G ++++N +KGYGFI ST + F H S+ + EG++V ++ ++
Sbjct: 85 KGRVEYFNTEKGYGFIKDLAST---EKYFFHISSAPE----GIGEGRIVLFELMRGTRG- 136
Query: 64 KYSAENL 70
+A +
Sbjct: 137 -MNAVKI 142
>gi|149908210|ref|ZP_01896874.1| hypothetical protein PE36_01852 [Moritella sp. PE36]
gi|149808752|gb|EDM68685.1| hypothetical protein PE36_01852 [Moritella sp. PE36]
Length = 304
Score = 42.3 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY------DYVQ 58
G ++ ++P K +GFI + D + + + S+ + ++ EG VT+ +
Sbjct: 236 GKVRKWDPKKRFGFIKSKDG-----DYYFNARELQSS-VRDIREGITVTFNAVNVSEVRV 289
Query: 59 NDANGKYSAENL 70
+ SA N+
Sbjct: 290 QKESASPSAFNV 301
>gi|297519352|ref|ZP_06937738.1| Cold shock-like protein cspC [Escherichia coli OP50]
Length = 31
Score = 42.3 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTES 27
+G +KW+N KG+GFITP ++
Sbjct: 5 KGQVKWFNESKGFGFITPADGSKD 28
>gi|145284600|gb|ABP52047.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 26
Score = 42.0 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 4/30 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+NPDKG+GFIT E G DVF+H
Sbjct: 1 GKVKWFNPDKGFGFITSED----GQDVFVH 26
>gi|304398673|ref|ZP_07380545.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
gi|304353884|gb|EFM18259.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
Length = 162
Score = 42.0 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-EDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+ P S
Sbjct: 54 NKG--LSAYAVKVAPTS 68
>gi|153870420|ref|ZP_01999827.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS]
gi|152073121|gb|EDN70180.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS]
Length = 194
Score = 42.0 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDA 61
+G + + +KG+GFI PE G+DVF+H A EG ++ Y +
Sbjct: 12 QKGVLFTWKDEKGFGFILPENC---GEDVFIHIRAF-GKISRRPKEGDIIYYHLKTTSSN 67
Query: 62 NGKYSAENLKL 72
GKY A N +
Sbjct: 68 KGKYRAYNATI 78
>gi|6014735|sp|P81622|CSPS_STRTR RecName: Full=Cold shock protein CspSt
Length = 21
Score = 42.0 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 3 HRGSIKWYNPDKGYGFITPEG 23
G++KW+N +KG+GFIT E
Sbjct: 1 KNGTVKWFNAEKGFGFITSED 21
>gi|288550026|ref|ZP_05969023.2| putative cold-shock protein [Enterobacter cancerogenus ATCC
35316]
gi|288316460|gb|EFC55398.1| putative cold-shock protein [Enterobacter cancerogenus ATCC
35316]
Length = 178
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+I W+ DKG+GFI E + + A + + VT++ N+
Sbjct: 23 NGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTNNKG 75
Query: 63 GKYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 76 --LSAYAVKVIPES 87
>gi|5817108|emb|CAB53670.1| hypothetical protein [Homo sapiens]
Length = 171
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 58 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 113
Query: 76 SS 77
Sbjct: 114 GP 115
>gi|315182581|gb|ADT89494.1| cold shock DNA-binding domain-containing protein [Vibrio furnissii
NCTC 11218]
Length = 235
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G I + DKGYG++T E + ++ V+++ + GQ V + VQ+D
Sbjct: 35 MAIKGRITEWYADKGYGYVTSEADAL---RIKFYQRDVSNSVDLSGHAGQAVRFRLVQDD 91
Query: 61 ANGKYSAENL 70
A + A ++
Sbjct: 92 AGNR-RATHV 100
>gi|150005116|ref|YP_001299860.1| cold shock protein, putative DNA-binding protein [Bacteroides
vulgatus ATCC 8482]
gi|254883251|ref|ZP_05255961.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294778926|ref|ZP_06744342.1| cold-shock DNA-binding domain protein [Bacteroides vulgatus PC510]
gi|319642626|ref|ZP_07997272.1| cold shock protein [Bacteroides sp. 3_1_40A]
gi|149933540|gb|ABR40238.1| cold shock protein, putative DNA-binding protein [Bacteroides
vulgatus ATCC 8482]
gi|254836044|gb|EET16353.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294447235|gb|EFG15819.1| cold-shock DNA-binding domain protein [Bacteroides vulgatus PC510]
gi|317385714|gb|EFV66647.1| cold shock protein [Bacteroides sp. 3_1_40A]
Length = 148
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+VH G I+ +N KGYGF+ ++ + F H S + + N+ E +VT++ +
Sbjct: 84 LVHEGRIEHFNVSKGYGFVK---DLKNAEKYFFHISGL----IDNIIENNIVTFELEKGS 136
Query: 61 ANGKYSAENLKL 72
+A +KL
Sbjct: 137 RG--MNAVKIKL 146
>gi|137044|sp|P29174|CSDE1_CAVPO RecName: Full=Cold shock domain-containing protein E1; AltName:
Full=Protein UNR
gi|49568|emb|CAA42715.1| unr [Cavia porcellus]
Length = 114
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 1 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 56
Query: 76 SS 77
Sbjct: 57 GP 58
>gi|212711744|ref|ZP_03319872.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens
DSM 30120]
gi|212685846|gb|EEB45374.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens
DSM 30120]
Length = 160
Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+I W+ DKG+GF+ E + + A + +G VT++ N+
Sbjct: 2 NGTITTWF-EDKGFGFLKDENGDN------RYFHVIKVANPDLIKKGAEVTFEPTTNNKG 54
Query: 63 GKYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 55 --LSAFAVKVIPES 66
>gi|313225212|emb|CBY21006.1| unnamed protein product [Oikopleura dioica]
Length = 643
Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND-----ANG 63
+G+GFI E + + +F H S V A + G V + +++ G
Sbjct: 378 VKEGFGFIKREKAQKGDSRIFFHSSEVLEQQPASNKKIKVGDQVEFLTLRDPLARANYRG 437
Query: 64 KYSAENLKLVPKS 76
+ A ++++ +S
Sbjct: 438 RCHATRIRIIAQS 450
Score = 37.7 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
+GFI EG D+F H S + G L + V ND +G+++A + V
Sbjct: 572 FGFIRIEGV---DGDIFFHSS--EADGFDTLKKDDWVQSTIEWNDRSGRWNATKVTKVS 625
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
GYGFI F + + G V + +D K A +
Sbjct: 195 VKSGYGFIKRLDVESETFFHFSQVLDLKEEADNRVEIGDKVDFSLGNHDK--KEVALKIA 252
Query: 72 LVPKS 76
++PKS
Sbjct: 253 ILPKS 257
>gi|73981088|ref|XP_856836.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein)
(N-ras upstream gene protein) isoform 14 [Canis
familiaris]
Length = 763
Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 650 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 705
Query: 76 SS 77
Sbjct: 706 GP 707
Score = 40.4 bits (94), Expect = 0.090, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+GFI ++F H S L L G V + D NGK A +
Sbjct: 197 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTIK--DRNGKEVATD 244
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 33.5 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 422 GVIAYDDC---GVKLTIAFQAKDVEGSASPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 478
Query: 77 SN 78
SN
Sbjct: 479 SN 480
>gi|149046919|gb|EDL99667.1| rCG58531, isoform CRA_a [Rattus norvegicus]
Length = 99
Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR 35
G KW+N G+GFI+ + D+ +
Sbjct: 54 TGHCKWFNVRMGFGFISMISREGNPLDIPVDV 85
>gi|313221461|emb|CBY32211.1| unnamed protein product [Oikopleura dioica]
Length = 643
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND-----ANG 63
+G+GFI E + + +F H S V A + G V + +++ G
Sbjct: 378 VKEGFGFIKREKAQKGDSRIFFHSSEVLEQQPASNKKIKVGDQVEFLTLRDPLARANYRG 437
Query: 64 KYSAENLKLVPKS 76
+ A ++++ +S
Sbjct: 438 RCHATRIRIIAQS 450
Score = 37.7 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
+GFI EG D+F H S + G L + V ND +G+++A + V
Sbjct: 572 FGFIRIEGV---DGDIFFHSS--EADGFDTLKKDDWVQSTIEWNDRSGRWNATKVTKVS 625
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
GYGFI F + + G V + +D K A +
Sbjct: 195 VKSGYGFIKRLDVESETFFHFSQVLDLKEEADNRVEIGDKVDFSLGNHDK--KEVALKIA 252
Query: 72 LVPKS 76
++PKS
Sbjct: 253 ILPKS 257
>gi|170693562|ref|ZP_02884721.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
gi|170141717|gb|EDT09886.1| cold-shock DNA-binding domain protein [Burkholderia graminis
C4D1M]
Length = 33
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
G L EGQ VT++ VQ A N++
Sbjct: 1 MNGFKTLKEGQKVTFEVVQGPKGK--QASNIQ 30
>gi|212694509|ref|ZP_03302637.1| hypothetical protein BACDOR_04037 [Bacteroides dorei DSM 17855]
gi|237711155|ref|ZP_04541636.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237727519|ref|ZP_04558000.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265750744|ref|ZP_06086807.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212663010|gb|EEB23584.1| hypothetical protein BACDOR_04037 [Bacteroides dorei DSM 17855]
gi|229434375|gb|EEO44452.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454999|gb|EEO60720.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263237640|gb|EEZ23090.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 148
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+VH G I+ +N KGYGF+ ++ + F H S + + N+ E +VT++ +
Sbjct: 84 LVHEGRIEHFNVSKGYGFVK---DLKNAEKYFFHISGL----IDNIIENNIVTFELEKGS 136
Query: 61 ANGKYSAENLKL 72
+A +KL
Sbjct: 137 RG--MNAVKIKL 146
>gi|8100800|gb|AAF72415.1|AF218051_5 cold shock protein [Salmonella enterica subsp. enterica serovar
Enteritidis]
Length = 67
Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQND 60
+ G + +Y+ KGYGFI E G DVF G ++ +G LV + + D
Sbjct: 1 MENGFVNFYDHVKGYGFIRRER----GRDVFFRYDDFLFLGHDVDICKGILVRFKLEKTD 56
Query: 61 ANGKYSAEN 69
K A
Sbjct: 57 KGFKAVAIQ 65
>gi|308187834|ref|YP_003931965.1| cold-shock protein [Pantoea vagans C9-1]
gi|308058344|gb|ADO10516.1| putative cold-shock protein [Pantoea vagans C9-1]
Length = 162
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-EDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+ P S
Sbjct: 54 NKG--LSAYAVKVAPTS 68
>gi|74204494|dbj|BAE43235.1| unnamed protein product [Mus musculus]
gi|148673098|gb|EDL05045.1| lin-28 homolog B (C. elegans), isoform CRA_c [Mus musculus]
Length = 96
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR 35
G KW+N G+GFI+ + D+ +
Sbjct: 54 TGHCKWFNVRMGFGFISMISREGNPLDIPVDV 85
>gi|297159817|gb|ADI09529.1| hypothetical protein SBI_06409 [Streptomyces bingchenggensis
BCW-1]
Length = 71
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
+ +++ ++ ++G+G ++ + H SAV + G +L GQ VT D
Sbjct: 1 MVTATVREWHDEEGWG---VLDCPDTPGGCWGHFSAVEAQGFRSLAPGQRVTLD 51
>gi|296275546|ref|ZP_06858053.1| hypothetical protein SauraMR_04340 [Staphylococcus aureus subsp.
aureus MR1]
gi|296277083|ref|ZP_06859590.1| hypothetical protein SauraMR_12081 [Staphylococcus aureus subsp.
aureus MR1]
Length = 18
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 16/18 (88%)
Query: 2 VHRGSIKWYNPDKGYGFI 19
++ G++KW+N +KG+GFI
Sbjct: 1 MNNGTVKWFNAEKGFGFI 18
>gi|323456552|gb|EGB12419.1| hypothetical protein AURANDRAFT_61106 [Aureococcus anophagefferens]
Length = 943
Score = 42.0 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT--EGQLVTYDYVQN 59
G + + +GYG I P+ + +F+H SA+ + G +L+ G ++YD
Sbjct: 624 RATGRLDSWVKTRGYGLIAPD---HGSEKIFVHASALKAFGTKDLSSFVGTRMSYDT--G 678
Query: 60 DANGKYSAENLK 71
K A +++
Sbjct: 679 TRQNKPIALDVR 690
>gi|323449559|gb|EGB05446.1| hypothetical protein AURANDRAFT_18065 [Aureococcus
anophagefferens]
Length = 51
Score = 42.0 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
G++ W++ K YGFI+PE ++ + + +GQ V +++ +
Sbjct: 1 GTLLWFDQTKQYGFISPENGHDNYFLHGIDI-------YDQVHKGQKVQFEHGTD 48
>gi|207724748|ref|YP_002255145.1| cold shock protein activator [Ralstonia solanacearum MolK2]
gi|206589971|emb|CAQ36932.1| cold shock protein activator [Ralstonia solanacearum MolK2]
Length = 68
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
T + F+ S + +GL EGQ V++D V +G+ A N+K +
Sbjct: 16 TGAATDTEAASFFIRDSEIQLSGLQRFREGQRVSFDVVMGP-DGELIAVNIKPI 68
>gi|53803587|ref|YP_114575.1| cold-shock domain-contain protein [Methylococcus capsulatus str.
Bath]
gi|53757348|gb|AAU91639.1| cold-shock domain family protein [Methylococcus capsulatus str.
Bath]
Length = 225
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---NDANG 63
+ W + +KG+GFI P D+F+H SA G +V Y
Sbjct: 23 VVWRD-EKGFGFIRP---FAGDHDLFIHISAFKKGMSRRPQVGDIVHYRIETEADGRERL 78
Query: 64 KYSA-------------ENLKLVPKSS 77
+++A +K + +S
Sbjct: 79 RHAAIEGVKYAMPHFGPVKVKPLERSP 105
>gi|226364925|ref|YP_002782707.1| hypothetical protein ROP_55150 [Rhodococcus opacus B4]
gi|226243414|dbj|BAH53762.1| hypothetical protein [Rhodococcus opacus B4]
Length = 192
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD----YV 57
G ++ ++G+G I + + + H S V G +LT G VT++
Sbjct: 119 RTTGIVRTCIDEEGWGVIDSDATPGG---AWSHFSLVEGPGYRSLTPGHEVTFEPETMVG 175
Query: 58 QNDANGKYSAENLKLVP 74
Y A +++ V
Sbjct: 176 GTQDGYHYRALDVRKVE 192
Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
M G ++ ++ + +G I + + + +VA G L EGQ V ++
Sbjct: 1 MATIGVVRSWSIEAMWGVIDSDETPGG---CWTLFHSVAVEGFPALREGQQVEFE 52
>gi|218246175|ref|YP_002371546.1| cold-shock DNA-binding domain-containing protein [Cyanothece sp.
PCC 8801]
gi|218166653|gb|ACK65390.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8801]
Length = 209
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW ++G+GFI P +VFLH S V A E + Y V D++GK A
Sbjct: 12 KW-KDERGFGFIQPID---GSQEVFLHISEVKDASRR-PQENDTIYYHCVV-DSDGKVRA 65
Query: 68 EN 69
N
Sbjct: 66 CN 67
>gi|257059224|ref|YP_003137112.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8802]
gi|256589390|gb|ACV00277.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8802]
Length = 211
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
KW ++G+GFI P +VFLH S V A E + Y V D++GK A
Sbjct: 12 KW-KDERGFGFIQPID---GSQEVFLHISEVKDASRR-PQENDTIYYHCVV-DSDGKVRA 65
Query: 68 EN 69
N
Sbjct: 66 CN 67
>gi|73981083|ref|XP_856712.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein)
(N-ras upstream gene protein) isoform 12 [Canis
familiaris]
Length = 449
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 391
Query: 76 SS 77
Sbjct: 392 GP 393
>gi|74144586|dbj|BAE27281.1| unnamed protein product [Mus musculus]
Length = 449
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 391
Query: 76 SS 77
Sbjct: 392 GP 393
Score = 34.3 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 108 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQMATCVRLLGRN 164
Query: 77 SN 78
SN
Sbjct: 165 SN 166
>gi|317053944|ref|YP_004117969.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
At-9b]
gi|316951939|gb|ADU71413.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
Length = 160
Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
M G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 1 MAMNGTITTWF-QDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTN 53
Query: 60 DANGKYSAENLKLVPKS 76
+ SA +K+ P+S
Sbjct: 54 NKG--LSAYAVKVAPES 68
>gi|169634167|ref|YP_001707903.1| putative cold shock protein [Acinetobacter baumannii SDF]
gi|169152959|emb|CAP02005.1| putative cold shock protein [Acinetobacter baumannii]
Length = 97
Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ G IK YN DKG+ FI+ + D+F H S ++ + V + D
Sbjct: 6 YTGRIKQYNADKGFSFIS-----TTEGDIFFHISDFPASE-GEPKRNEKVRFLAA--DNR 57
Query: 63 GKYSAENLKLVPKSS 77
GK+ A ++ + +
Sbjct: 58 GKFKAIKIERIDPNP 72
>gi|116283763|gb|AAH29058.1| Csde1 protein [Mus musculus]
Length = 449
Score = 41.6 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGV-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 391
Query: 76 SS 77
Sbjct: 392 GP 393
>gi|224006730|ref|XP_002292325.1| hypothetical protein THAPSDRAFT_263580 [Thalassiosira pseudonana
CCMP1335]
gi|220971967|gb|EED90300.1| hypothetical protein THAPSDRAFT_263580 [Thalassiosira pseudonana
CCMP1335]
Length = 329
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKYSAEN--LKL 72
+GFI ++F H S + L G V + A N L+L
Sbjct: 12 FGFILCADRNL---ELFFHYSELRDGHSDELNIGDEVEFRVGAAESHGKPPRAVNGVLRL 68
Query: 73 VPKSS 77
P+
Sbjct: 69 APEEP 73
>gi|188991346|ref|YP_001903356.1| hypothetical protein xccb100_1951 [Xanthomonas campestris pv.
campestris str. B100]
gi|167733106|emb|CAP51304.1| Putative membrane protein [Xanthomonas campestris pv. campestris]
Length = 204
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + ++ KG+GF+ P G G+ F+H A G ++TY VQ D
Sbjct: 1 MRYQGRLSDWDDHKGFGFVVPHG---GGERAFVHIGAFGPQRRRPCN-GDVLTY-AVQRD 55
Query: 61 ANGKYSAENLK 71
A+ + A ++
Sbjct: 56 AHARLKATQVR 66
>gi|313242234|emb|CBY34398.1| unnamed protein product [Oikopleura dioica]
Length = 157
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
G++ ++ KG+GF+ + E G F H S V S + EG +V Y +
Sbjct: 59 GTVSAFSRTKGHGFLNSD---EDGKQEFFHVSDVVSQIVP--KEGDVVKYRVIPIPPKYE 113
Query: 64 KYSAENLKLVPKS 76
KY A + ++ +
Sbjct: 114 KYQAVQVTIMNEE 126
>gi|220910201|ref|YP_002485512.1| cold-shock DNA-binding domain-containing protein [Cyanothece sp.
PCC 7425]
gi|219866812|gb|ACL47151.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 7425]
Length = 207
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
++GYGF+ T G++++ HR++V L G V + V+ A +++
Sbjct: 131 EQGYGFLK----TLGGEEIYFHRNSVLHDDFERLEVGTGVRFVAVEGAEG--LQASTVQI 184
Query: 73 VPKSS 77
V K
Sbjct: 185 VDKPG 189
>gi|4884156|emb|CAB43294.1| hypothetical protein [Homo sapiens]
Length = 369
Score = 41.6 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 256 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 311
Query: 76 SS 77
Sbjct: 312 GP 313
Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
G I + G + + A G + G V + G+ A ++L+ ++
Sbjct: 28 GIIAYDDC---GVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRN 84
Query: 77 SN 78
SN
Sbjct: 85 SN 86
>gi|254410099|ref|ZP_05023879.1| Tetratricopeptide repeat family [Microcoleus chthonoplastes PCC 7420]
gi|196183135|gb|EDX78119.1| Tetratricopeptide repeat family [Microcoleus chthonoplastes PCC 7420]
Length = 1402
Score = 41.6 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 3 HRGSIKWYN-PDKGY--GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
+GS+K+ ++GY G+I P+ D++ + S L L +G LV + QN
Sbjct: 1332 KQGSVKFIKYHEQGYHWGYIIPDD---GSRDIYFREGYINSHCLSKLAKGTLVEVEVKQN 1388
Query: 60 DANGKYSAENLKLVP 74
A+N++++
Sbjct: 1389 AKG--ACAKNVRIIS 1401
>gi|323493393|ref|ZP_08098515.1| hypothetical protein VIBR0546_13770 [Vibrio brasiliensis LMG
20546]
gi|323312216|gb|EGA65358.1| hypothetical protein VIBR0546_13770 [Vibrio brasiliensis LMG
20546]
Length = 197
Score = 41.6 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59
M +G+I ++ KGYG+I+ E + H S + ++ L ++E V + +
Sbjct: 1 MSIQGTIAQWDQSKGYGYISVEN---QDTQILFHISDLENNSQLPCVSE--PVVFRLG-S 54
Query: 60 DANGKYSAENLK 71
D+NG A ++
Sbjct: 55 DSNGAMRAVDVT 66
>gi|255535685|ref|YP_003096056.1| Cold-shock protein, DNA-binding [Flavobacteriaceae bacterium
3519-10]
gi|255341881|gb|ACU07994.1| Cold-shock protein, DNA-binding [Flavobacteriaceae bacterium
3519-10]
Length = 104
Score = 41.6 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+V G + + DKGYGFIT GS ++VF H + + +G V+++ ++
Sbjct: 41 LVKTGIVT-FLSDKGYGFITEAGSQ---ENVFFH----ENNCAHQVKKGNKVSFEKERSP 92
Query: 61 ANGKYSAENLKLVP 74
+SA N+++V
Sbjct: 93 KG--FSAINIQIVK 104
>gi|307825190|ref|ZP_07655410.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
SV96]
gi|307733646|gb|EFO04503.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
SV96]
Length = 180
Score = 41.6 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++ P+K +GFI E G +++ HR++V +G L G + Y V+ +
Sbjct: 118 TGTVSRMLPEKDHGFIEAED----GHEIYFHRNSVTGSGFDALQVGDEIRY--VEETDDL 171
Query: 64 KYSAENL 70
A +
Sbjct: 172 GPQASIV 178
>gi|21231668|ref|NP_637585.1| integral membrane protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768209|ref|YP_242971.1| integral membrane protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113365|gb|AAM41509.1| integral membrane protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573541|gb|AAY48951.1| integral membrane protein [Xanthomonas campestris pv. campestris
str. 8004]
Length = 204
Score = 41.6 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G + ++ KG+GF+ P G G+ F+H A G ++TY VQ D
Sbjct: 1 MRYQGRLSDWDDHKGFGFVVPHG---GGERAFVHIGAFGPQRRRPCN-GDVLTY-AVQRD 55
Query: 61 ANGKYSAENLK 71
A+ + A ++
Sbjct: 56 AHARLKATQVR 66
>gi|159163306|pdb|1WFQ|A Chain A, Solution Structure Of The First Cold-Shock Domain Of The
Human Kiaa0885 Protein (Unr Protein)
Length = 89
Score = 41.6 bits (97), Expect = 0.040, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L +
Sbjct: 30 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISG 85
Query: 76 SSN 78
S+
Sbjct: 86 PSS 88
>gi|145284594|gb|ABP52044.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 27
Score = 41.6 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI + G DVF+H
Sbjct: 1 GKVKWFNEAKGFGFIAQDN---GGQDVFVH 27
>gi|296103463|ref|YP_003613609.1| cold-shock DNA-binding domain protein [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057922|gb|ADF62660.1| cold-shock DNA-binding domain protein [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 157
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G+I + DKG+GFI E + + A + + VT++ N+
Sbjct: 2 NGTITTWFKDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTNNKG- 54
Query: 64 KYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 55 -LSAYAVKVIPES 66
>gi|291453430|ref|ZP_06592820.1| cold-shock DNA-binding protein family [Streptomyces albus J1074]
gi|291356379|gb|EFE83281.1| cold-shock DNA-binding protein family [Streptomyces albus J1074]
Length = 147
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+GYGFI P E G+DVF+H + + G+ V + + K A ++LV
Sbjct: 2 RGYGFIVP---NEGGEDVFMHANDLVDEKYLY-QSGREVEFFEEMGEKGPK--ASQIRLV 55
Query: 74 PKSS 77
+SS
Sbjct: 56 YRSS 59
>gi|257094012|ref|YP_003167653.1| cold-shock DNA-binding domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046536|gb|ACV35724.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 855
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
GS+ Y+ GYG+I P+ + +HR ++ GL L+ G V +
Sbjct: 8 GSVDQYDDRMGYGYIKPDEPGSEEERFLVHRRSLRIPGLP-LSRGDRVIFKLEVVPRGLL 66
Query: 65 YSAENLKLVPKSSN 78
+ + +L+ S+
Sbjct: 67 AADVHFELLDPDSD 80
>gi|289664292|ref|ZP_06485873.1| cold-shock DNA-binding protein family protein [Xanthomonas
campestris pv. vasculorum NCPPB702]
Length = 94
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G++ ++ D+G+G ITP + GD+ F+H SA G G+ ++++
Sbjct: 1 MRTHGTLTRWSTDRGFGLITPA---QPGDEQFVHISAFPR-GFEAPRIGEALSFETKPGT 56
Query: 61 ANGKYSAENLKLVPKSS 77
+ + A +++V +
Sbjct: 57 -DARTCA--VRIVRAGT 70
>gi|18204965|gb|AAH21692.1| CSDE1 protein [Homo sapiens]
Length = 272
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V +
Sbjct: 159 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVCE 214
Query: 76 SS 77
Sbjct: 215 GP 216
>gi|295096673|emb|CBK85763.1| cold-shock DNA-binding protein family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 157
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G+I + DKG+GFI E + + A + + VT++ N
Sbjct: 2 NGTITTWFKDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTNSKG- 54
Query: 64 KYSAENLKLVPKS 76
SA +K++P+S
Sbjct: 55 -LSAYAVKVIPES 66
>gi|283834334|ref|ZP_06354075.1| putative cold-shock protein [Citrobacter youngae ATCC 29220]
gi|291069867|gb|EFE07976.1| putative cold-shock protein [Citrobacter youngae ATCC 29220]
Length = 158
Score = 41.2 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+I W+ DKG+GFI E + + A + + VT++ N+
Sbjct: 2 NGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTNNKG 54
Query: 63 GKYSAENLKLVPKS 76
SA +K++P S
Sbjct: 55 --LSAYAVKVIPDS 66
>gi|326801848|ref|YP_004319667.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
gi|326552612|gb|ADZ80997.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
Length = 146
Score = 41.2 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H+G +K+YN +G+GFI E G+ VF + + ++ +V + +
Sbjct: 86 HKGKVKYYNEQRGWGFINNE----FGERVFFLIAEAPA----SIKVDDVVNFRTRKGPKG 137
Query: 63 GKYSAENLKLV 73
A +++V
Sbjct: 138 --LQAYEIQVV 146
>gi|291285773|ref|YP_003502591.1| Cold shock-like protein cspF [Escherichia coli O55:H7 str.
CB9615]
gi|331666059|ref|ZP_08366953.1| conserved domain protein [Escherichia coli TA143]
gi|290765646|gb|ADD59607.1| Cold shock-like protein cspF [Escherichia coli O55:H7 str.
CB9615]
gi|331057110|gb|EGI29104.1| conserved domain protein [Escherichia coli TA143]
Length = 70
Score = 41.2 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV LH SA+ +T G V + +
Sbjct: 6 TGILKTFDGKSGKGLITPSDGRI---DVQLHVSALNLRDAEEITTGLRVEFCRINGLRG- 61
Query: 64 KYSAENL 70
SA N+
Sbjct: 62 -PSAANV 67
>gi|300717273|ref|YP_003742076.1| cold-shock protein [Erwinia billingiae Eb661]
gi|299063109|emb|CAX60229.1| Putative cold-shock protein [Erwinia billingiae Eb661]
Length = 160
Score = 41.2 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+I + DKG+GFI E + V A + + VT++ N
Sbjct: 1 MAMNGTITTWFKDKGFGFIKDENGDN------RYFHEVKVANPDLIKKDAAVTFEPTTNS 54
Query: 61 ANGKYSAENLKLVPKS 76
SA +K+ P+S
Sbjct: 55 KG--LSAYAVKVAPES 68
>gi|302039051|ref|YP_003799373.1| cold shock protein modulated with ribosomal subunit interface-like
protein [Candidatus Nitrospira defluvii]
gi|300607115|emb|CBK43448.1| Cold shock protein modulated with ribosomal subunit interface-like
protein [Candidatus Nitrospira defluvii]
Length = 181
Score = 41.2 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG + P GYGFI + G +V+ H++AV ++ +GQ V ++ +
Sbjct: 113 RGVVSKVFPHLGYGFILKD----GGGEVYFHKNAVKGIPFNDMEDGQEVIFESEPGEKG- 167
Query: 64 KYSAENLKL 72
A ++
Sbjct: 168 -LHATIVQP 175
>gi|227330242|ref|ZP_03834266.1| hypothetical protein PcarcW_24001 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 36
Score = 41.2 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 7 IKWYNPDKGYGFITP 21
+KW+N KG+GFITP
Sbjct: 1 VKWFNESKGFGFITP 15
>gi|207739418|ref|YP_002257811.1| cold shock protein activator [Ralstonia solanacearum IPO1609]
gi|206592793|emb|CAQ59699.1| cold shock protein activator [Ralstonia solanacearum IPO1609]
Length = 68
Score = 41.2 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
F+ S + +GL EGQ V++D V +G+ A N+K +
Sbjct: 27 FFIRDSEIQLSGLQRFREGQRVSFDVVMGP-DGELIAVNIKPI 68
>gi|238755047|ref|ZP_04616395.1| Cold-shock DNA-binding domain protein [Yersinia ruckeri ATCC
29473]
gi|238706751|gb|EEP99120.1| Cold-shock DNA-binding domain protein [Yersinia ruckeri ATCC
29473]
Length = 159
Score = 41.2 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G I + DKG+GFIT E + + A + + VT++ N+
Sbjct: 2 NGRITTFFEDKGFGFITDENGDN------RYFHVIKVANPEMIKKNAEVTFEPTTNNKGL 55
Query: 64 KYSAENLKLVPK 75
A + + K
Sbjct: 56 SAFAVKVAIESK 67
>gi|254411566|ref|ZP_05025342.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
7420]
gi|196181288|gb|EDX76276.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
7420]
Length = 215
Score = 40.8 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
H+G + + ++G+GFI P+ +VFLH + + + G ++ Y
Sbjct: 6 HKGQLTVWKDEEGFGFIKPD---HGDQNVFLHITGLKNPNRR-PQVGDIIRYQLTIG-KK 60
Query: 63 GKYSAENLKLVPKSSN 78
GK A + ++ +++
Sbjct: 61 GKLRASH-AVIEGTAS 75
>gi|116751463|ref|YP_848150.1| cold-shock protein, DNA-binding [Syntrophobacter fumaroxidans MPOB]
gi|116700527|gb|ABK19715.1| Cold-shock protein, DNA-binding [Syntrophobacter fumaroxidans MPOB]
Length = 176
Score = 40.8 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+ ++GYGF+T T G +V+ H +A+ + +L G V++ + +
Sbjct: 115 RVSRLFSEEGYGFLT----TPEGREVYFHENALLNGKFKDLAVGTPVSFVEREGEKG--S 168
Query: 66 SAENLKLV 73
A ++ ++
Sbjct: 169 QASSVFVI 176
>gi|197122810|ref|YP_002134761.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
gi|196172659|gb|ACG73632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
Length = 195
Score = 40.8 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
RG + +G+GF+ TP+ +++ +V G L G V + V+
Sbjct: 118 PRGVVARIFHGEGFGFLRTPDD-----REIYFDARSVLRGGFDRLEIGSPVRF--VEEPG 170
Query: 62 NGKYSAENLKLV 73
+ A + L+
Sbjct: 171 DEGPQASTVALL 182
>gi|237730314|ref|ZP_04560795.1| cold shock protein E [Citrobacter sp. 30_2]
gi|226905853|gb|EEH91771.1| cold shock protein E [Citrobacter sp. 30_2]
Length = 158
Score = 40.8 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+I W+ DKG+GFI E + + A + + VT++ N+
Sbjct: 2 NGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTNNKG 54
Query: 63 GKYSAENLKLVPKS 76
SA +K++P S
Sbjct: 55 --LSAYAVKVIPDS 66
>gi|320353591|ref|YP_004194930.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
DSM 2032]
gi|320122093|gb|ADW17639.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
DSM 2032]
Length = 182
Score = 40.8 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
YG IT T D++ HR++V + LT G V + D A N+K+V
Sbjct: 131 YGTIT----TSDDRDIYFHRNSVLNTNFDALTIGTAVQFREEDGDKG--PQARNVKVV 182
>gi|5714745|gb|AAD48061.1|AF171926_1 cold shock protein 7.4 [Rhodococcus sp. 7/1]
Length = 57
Score = 40.8 bits (95), Expect = 0.068, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
+WYN +KG+G +TP+ D F+H +A+ S
Sbjct: 3 RWYNAEKGFGCLTPDD---GSKDCFVHFTALRSE 33
>gi|145284584|gb|ABP52039.1| cold shock protein [Psychrobacter sp. BJ3]
Length = 27
Score = 40.8 bits (95), Expect = 0.068, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI + G DVF+H
Sbjct: 1 GQVKWFNEAKGFGFIAQDN---GGQDVFVH 27
>gi|68006761|ref|XP_670490.1| cold-shock protein [Plasmodium berghei strain ANKA]
gi|56485793|emb|CAH94919.1| cold-shock protein, putative [Plasmodium berghei]
Length = 84
Score = 40.8 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G++ ++ KGYGFI P G DVF+H + + Q ++ +
Sbjct: 32 TGNVIKFDKRKGYGFIKPND---GGPDVFVHYTEIC----------QNRSFSVTNEEKKK 78
>gi|311279890|ref|YP_003942121.1| Cold-shock protein DNA-binding protein [Enterobacter cloacae
SCF1]
gi|308749085|gb|ADO48837.1| Cold-shock protein DNA-binding protein [Enterobacter cloacae
SCF1]
Length = 160
Score = 40.8 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G+I + DKG+GFI E + + A + + VT++ N
Sbjct: 2 QGTITTWFEDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTNSKG- 54
Query: 64 KYSAENLKLVPKS 76
SA +K++P S
Sbjct: 55 -LSAYAVKVIPDS 66
>gi|197107117|pdb|2K5N|A Chain A, Solution Nmr Structure Of The N-Terminal Domain Of
Protein Eca1580 From Erwinia Carotovora, Northeast
Structural Genomics Consortium Target Ewr156a
Length = 74
Score = 40.8 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G+I + DKG+GFI E + + A + + VT++ N+
Sbjct: 1 MAMNGTITTWFKDKGFGFIKDENGDN------RYFHVIKVANPDLIKKDAAVTFEPTTNN 54
Query: 61 ANGKYSAENLKLVP 74
SA +K+VP
Sbjct: 55 KG--LSAYAVKVVP 66
>gi|331652936|ref|ZP_08353941.1| conserved domain protein [Escherichia coli M718]
gi|331049034|gb|EGI21106.1| conserved domain protein [Escherichia coli M718]
Length = 70
Score = 40.4 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +K ++ G G ITP DV LH SA+ +T G V + +
Sbjct: 6 TGIVKTFDGKSGKGLITPSDGRI---DVQLHVSALNLRDAEEITTGLRVEFCRINGLRG- 61
Query: 64 KYSAENL 70
S N+
Sbjct: 62 -PSTANV 67
>gi|326429250|gb|EGD74820.1| hypothetical protein PTSG_07053 [Salpingoeca sp. ATCC 50818]
Length = 856
Score = 40.4 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +K P G+GFIT S DD+F+ S V G L V ++ +
Sbjct: 561 GWVKRLMPGSGFGFIT---SFPKLDDIFMPFSNVV--GHCELDVNMWVEFEITPSPRG-- 613
Query: 65 YSAENL 70
A +
Sbjct: 614 PVAARV 619
Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA----VASAGLFNLTEGQLVTYDYVQND 60
G I + ++G+GFI G +F H S+ V L V ++ V
Sbjct: 109 GVISDWKSERGFGFIK--SGRFPGQSLFFHVSSFNFHVGRDDRSLLH--MPVEFEIVDRG 164
Query: 61 ANGKYSAENLKLVPKS 76
G A N+ +V +S
Sbjct: 165 RRG-IGAVNIDIVHRS 179
>gi|261250930|ref|ZP_05943504.1| predicted membrane protein [Vibrio orientalis CIP 102891]
gi|260937803|gb|EEX93791.1| predicted membrane protein [Vibrio orientalis CIP 102891]
Length = 196
Score = 40.4 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G+I ++ +KGYG+I+ E + H S +A+A + V + +
Sbjct: 1 MSIQGTIAHWDQNKGYGYISVEN---QDTQIVFHISDLANASQAPCVS-EPVVFRLGSDS 56
Query: 61 ANGKYSAENLK 71
+ G A ++
Sbjct: 57 SGG-MRAIQVE 66
>gi|182677540|ref|YP_001831686.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182633423|gb|ACB94197.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 187
Score = 40.4 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G++ P++ YGF+ E G +++ HR++V +L G VT+ +
Sbjct: 120 GTVIRVRPEEDYGFLETE-----GREIYFHRNSVLDEAFAHLEPGVRVTFVEEMGEKG-- 172
Query: 65 YSAENLKLVPK 75
A +KL+ K
Sbjct: 173 PQASTVKLLGK 183
>gi|260072563|gb|ACX30463.1| hypothetical protein SUP05_FGYC13F180027 [uncultured SUP05
cluster bacterium]
Length = 107
Score = 40.4 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + + KGYGFIT + G+ F+H+ + + L V ++ +D
Sbjct: 6 KGIVAQF-GTKGYGFITGDD----GEKYFVHQKNIYNKAR--LKADTRVVFNAENSDKG- 57
Query: 64 KYSAENLKLVPKSSN 78
A ++KL S+
Sbjct: 58 -LVAVDVKLEKSFSS 71
>gi|178847411|pdb|2YTV|A Chain A, Solution Structure Of The Fifth Cold-Shock Domain Of The
Human Kiaa0885 Protein (Unr Protein)
Length = 79
Score = 40.4 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H V G+ L G V + + N GK SA N+ V
Sbjct: 20 FGFINYEVG--DSKKLFFHVKEVQ-DGI-ELQAGDEVEFSVILNQRTGKCSACNVWRVSG 75
Query: 76 SSN 78
S+
Sbjct: 76 PSS 78
>gi|294788309|ref|ZP_06753552.1| membrane protein,putative [Simonsiella muelleri ATCC 29453]
gi|294483740|gb|EFG31424.1| membrane protein,putative [Simonsiella muelleri ATCC 29453]
Length = 223
Score = 40.4 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+KW N ++G+GF+ +D+F H + + + + + VT +D ++
Sbjct: 23 IVKW-NSERGFGFVKTAEV---ANDIFFHVNTLVGKDEISPQQNESVTVYAKYDDDKKRW 78
Query: 66 SAENLK 71
SA +
Sbjct: 79 SATKIT 84
>gi|83646130|ref|YP_434565.1| hypothetical protein HCH_03390 [Hahella chejuensis KCTC 2396]
gi|83634173|gb|ABC30140.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length = 303
Score = 40.4 bits (94), Expect = 0.084, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL---------TEGQLVTYDYVQND 60
+ DKG+GF+T + + D+F H S V +G G + ++ ++
Sbjct: 210 WREDKGFGFLTVKEESGKTSDLFFHVSHVRFSGGTRPTNSEMTTIAKSGCQLEFERGISE 269
Query: 61 ANGKYSAENLKLVPKSSN 78
K A +K++P S+
Sbjct: 270 KGNKTCA--VKIIPVSAE 285
>gi|145284580|gb|ABP52037.1| cold shock protein [Psychrobacter sp. BJ3]
Length = 27
Score = 40.4 bits (94), Expect = 0.087, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI + G DVF+H
Sbjct: 1 GLVKWFNEAKGFGFIAQDN---GGQDVFVH 27
>gi|167470786|ref|ZP_02335490.1| cold shock DNA-binding domain protein [Yersinia pestis FV-1]
Length = 46
Score = 40.4 bits (94), Expect = 0.089, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
SA+AS G L +G V ++ SA N+
Sbjct: 11 SAIASNGFKTLADGLRVEFEITNGAKG--PSAANV 43
>gi|319794317|ref|YP_004155957.1| colD-shock DNA-binding domain protein [Variovorax paradoxus EPS]
gi|315596780|gb|ADU37846.1| cold-shock DNA-binding domain protein [Variovorax paradoxus EPS]
Length = 223
Score = 40.4 bits (94), Expect = 0.090, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59
M +G + + D+G+GFI S E DVF+H+ + L + G ++++ +
Sbjct: 1 MKRQGRLVRWEADRGFGFIR---SPEISADVFVHQRDF--SDRRVLPQVGMALSFEEIHV 55
Query: 60 DANGKYSAENLKLVPKSSN 78
G A ++ + +++
Sbjct: 56 GGKG-PRAVAVQAISANAS 73
>gi|323456016|gb|EGB11883.1| hypothetical protein AURANDRAFT_61124 [Aureococcus anophagefferens]
Length = 1130
Score = 40.4 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
YGFI + G D+F SA+ G+ V +D + G+ A+NL V
Sbjct: 414 YGFIHADDEKI-GRDLFFLWSALGGRNADRKAAVGERVAFDL--GEWKGRIVAQNLTKV 469
>gi|320163709|gb|EFW40608.1| hypothetical protein CAOG_01133 [Capsaspora owczarzaki ATCC 30864]
Length = 1075
Score = 40.4 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +D+F H AV + + L V + + +G+ A ++L+P+
Sbjct: 401 YGFIERADM---DEDIFFHFRAVDPS-VGELKPSDEVDF--IPIKRSGQLVASAIRLLPR 454
Query: 76 SS 77
+
Sbjct: 455 GT 456
Score = 35.4 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 46 LTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
+ G +V + V N GK A N+ L+ S
Sbjct: 561 IRAGDVVEFSLVANKRTGKTRATNMTLIESS 591
>gi|300779139|ref|ZP_07088997.1| competence factor transporter ComB [Chryseobacterium gleum ATCC
35910]
gi|300504649|gb|EFK35789.1| competence factor transporter ComB [Chryseobacterium gleum ATCC
35910]
Length = 142
Score = 40.4 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G + + +KGYGFIT + S +++F H + + +G V+++ ++
Sbjct: 80 RKTGIVT-FLSEKGYGFITEDNSK---ENIFFH----NNNCAEPVKKGNKVSFEKEKSPK 131
Query: 62 NGKYSAENLKLVP 74
+SA ++LV
Sbjct: 132 G--FSAVEIQLVK 142
>gi|145284598|gb|ABP52046.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 26
Score = 40.4 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 4/30 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+NPDKG+GFIT E G DVF+H
Sbjct: 1 GPVKWFNPDKGFGFITSED----GQDVFVH 26
>gi|241623490|ref|XP_002409126.1| conserved hypothetical protein [Ixodes scapularis]
gi|215503120|gb|EEC12614.1| conserved hypothetical protein [Ixodes scapularis]
Length = 348
Score = 40.0 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI ++F H S +L+ G+ V + NGK A + +P
Sbjct: 137 FGFIERADIV---KEIFFHSSECRD--FRSLSLGEDVEFSVQL--RNGKEVACGIVRLPT 189
Query: 76 SS 77
+
Sbjct: 190 GT 191
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 45 NLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
+L G V + + +G A N++LV +S
Sbjct: 254 SLQVGDRVQFCIATDRRDGLQRATNIELVDQS 285
>gi|283477603|emb|CAY73519.1| Cold shock-like protein cspLA (CspL) [Erwinia pyrifoliae DSM
12163]
Length = 158
Score = 40.0 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G+I W+ DKG+GFI E + + A + + VT++ N
Sbjct: 2 NGTITTWF-KDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTNTKG 54
Query: 63 GKYSAENLKLVPKS 76
SA +K+ P+S
Sbjct: 55 --LSAYAVKVAPES 66
>gi|145503922|ref|XP_001437933.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405094|emb|CAK70536.1| unnamed protein product [Paramecium tetraurelia]
Length = 190
Score = 40.0 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
G +K+++ +K YGFI + G D+F++ + G L G + + +
Sbjct: 105 TGYLKFFDENKNYGFIVMDS---DGSDIFVYADDLVKTGIAKEYLRTAKFGNYIRFTFTC 161
Query: 59 NDANGKY----SAENLK 71
+ GKY A +L+
Sbjct: 162 MEYYGKYNKSRKAVDLE 178
>gi|269468003|gb|EEZ79731.1| hypothetical protein Sup05_0432 [uncultured SUP05 cluster
bacterium]
Length = 107
Score = 40.0 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G + + KGYGFIT + G+ F+H+ + + L V ++ +D
Sbjct: 6 KGIVAQF-GTKGYGFITGDD----GEKYFVHQKNIYNKAR--LKADTRVVFNAENSDKG- 57
Query: 64 KYSAENLKLVPKSSN 78
A ++KL S+
Sbjct: 58 -LVAVDVKLEKSFSS 71
>gi|85857886|ref|YP_460088.1| cold shock DNA -binding domain-containing protein [Syntrophus
aciditrophicus SB]
gi|85720977|gb|ABC75920.1| cold shock DNA-binding domain [Syntrophus aciditrophicus SB]
Length = 176
Score = 40.0 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
RG I PD+GYGF+ G DV+ H ++V + L G V ++ D
Sbjct: 112 PRGRISVIFPDQGYGFLV----HPEGYDVYFHANSVLNRDFDKLAVGMEVRFNEEMGDKG 167
Query: 63 GKYSAENLKLV 73
A ++ ++
Sbjct: 168 --PQASSVIVL 176
>gi|78189938|ref|YP_380276.1| cold shock protein [Chlorobium chlorochromatii CaD3]
gi|78172137|gb|ABB29233.1| Cold shock protein [Chlorobium chlorochromatii CaD3]
Length = 310
Score = 40.0 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGFI +++F H S + +L V + +ND A+++ LV
Sbjct: 251 GYGFI-----KFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGD-EVAKDIVLVA 304
Query: 75 KSS 77
+ S
Sbjct: 305 EES 307
>gi|145284596|gb|ABP52045.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 26
Score = 39.6 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI + SG+DVF+H
Sbjct: 1 GMVKWFNDSKGFGFIQRD----SGEDVFVH 26
>gi|145489436|ref|XP_001430720.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397820|emb|CAK63322.1| unnamed protein product [Paramecium tetraurelia]
Length = 154
Score = 39.6 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
+ +G +K+Y+ K YGF+ + E G DVF+H + +AG+
Sbjct: 60 IRQKGRMKFYDDAKKYGFLVLD---EDGTDVFVHYDDLQAAGI 99
>gi|301384793|ref|ZP_07233211.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
Max13]
gi|302060713|ref|ZP_07252254.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
K40]
gi|302131941|ref|ZP_07257931.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 74
Score = 39.6 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + Y+ KG+GFI E G DVF V + + G +V ++ +
Sbjct: 11 TGFVNSYDSFKGFGFIRRE----KGRDVFFFYDDVE-DVVNGIAMGDVVRFEVHEEPKGP 65
Query: 64 K 64
+
Sbjct: 66 R 66
>gi|28871079|ref|NP_793698.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969685|ref|ZP_03397820.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
T1]
gi|28854329|gb|AAO57393.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925493|gb|EEB59053.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
T1]
Length = 72
Score = 39.6 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + Y+ KG+GFI E G DVF V + + G +V ++ +
Sbjct: 9 TGFVNSYDSFKGFGFIRRE----KGRDVFFFYDDVE-DVVNGIAMGDVVRFEVHEEPKGP 63
Query: 64 K 64
+
Sbjct: 64 R 64
>gi|237745437|ref|ZP_04575917.1| exoribonuclease RNAse R [Oxalobacter formigenes HOxBLS]
gi|229376788|gb|EEO26879.1| exoribonuclease RNAse R [Oxalobacter formigenes HOxBLS]
Length = 794
Score = 39.6 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGF+ + G+D+FL + + V V D G+ + +V
Sbjct: 84 GYGFVIRDD---GGEDIFLSENEMQKVMH-----NDRVQVRIVHTDRKGRPEGIIVSVVS 135
Query: 75 KS 76
++
Sbjct: 136 RA 137
>gi|15895663|ref|NP_349012.1| hypothetical protein CA_C2397 [Clostridium acetobutylicum ATCC
824]
gi|15025410|gb|AAK80352.1|AE007739_8 Hypothetical protein CA_C2397 [Clostridium acetobutylicum ATCC
824]
gi|325509813|gb|ADZ21449.1| Conserved hypothetical protein [Clostridium acetobutylicum EA
2018]
Length = 238
Score = 39.6 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 1 MVHRGSIKWY----------NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
M G I+W+ N +GFI G D++ ++ V L LT G
Sbjct: 1 MREIGLIRWFGGYNLRTKKMND---FGFIR----DNKGQDIYFNKGHVQ-CKLKELTPGI 52
Query: 51 LVTYDYVQNDANGKYSAENLKLVPKSSN 78
+T++ N N + A +KL+ ++
Sbjct: 53 GITFERGVNFKNDREQAIRIKLLKDEND 80
>gi|300120415|emb|CBK19969.2| unnamed protein product [Blastocystis hominis]
Length = 189
Score = 39.6 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
H G +++ + GY I + DV + S + L G +V++ ++
Sbjct: 19 RHTGKVQFLRLEHGY--IRIKNKINGVRDVTFYYSDLTEELKETLVLGSIVSFSIAVDE- 75
Query: 62 NGKYSAENLKL 72
NGK+ A ++++
Sbjct: 76 NGKFCATDIEI 86
>gi|145284590|gb|ABP52042.1| cold shock protein [Psychrobacter sp. BJ3]
gi|145284592|gb|ABP52043.1| cold shock protein [Moritella sp. 2-5-10-1]
Length = 27
Score = 39.6 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
G +KW+N KG+GFI + G DVF+H
Sbjct: 1 GPVKWFNEAKGFGFIAQDN---GGQDVFVH 27
>gi|300122347|emb|CBK22919.2| unnamed protein product [Blastocystis hominis]
Length = 172
Score = 39.6 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G +++ D YG+I D+ + V + +L G LV + V + G
Sbjct: 22 TGKVQFLKAD--YGYIRSRSKINGIRDITFNYMDVDPSLNRSLQVGDLVFFRVVIFPS-G 78
Query: 64 KYSAENLKLVPKS 76
K+ A ++++ P +
Sbjct: 79 KFCAVDIRMDPST 91
>gi|300697693|ref|YP_003748354.1| cold shock activator transcriptional regulator [Ralstonia
solanacearum CFBP2957]
gi|299074417|emb|CBJ53967.1| putative cold shock activator transcription regulator protein
[Ralstonia solanacearum CFBP2957]
Length = 68
Score = 39.6 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
T + F+ S + +G EGQ V++D V +G+ A N+K +
Sbjct: 16 TGAATDTEAAPFFIRDSEIQLSGSQRFHEGQRVSFDVVMGP-DGELIAVNIKPI 68
>gi|288560441|ref|YP_003423927.1| hypothetical protein mru_1185 [Methanobrevibacter ruminantium M1]
gi|288543151|gb|ADC47035.1| hypothetical protein mru_1185 [Methanobrevibacter ruminantium M1]
Length = 398
Score = 39.6 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY----DYVQN 59
G+I ++G+GFI P+ G + F + V+Y +
Sbjct: 329 TGTISAIKQERGFGFIKPDD---GGKNQFFLFKDFKDD-HDYIWNNMRVSYYLGDSIDYS 384
Query: 60 DANGKYSAENLKLV 73
A N++L+
Sbjct: 385 KNKESTRAVNVELI 398
>gi|292491725|ref|YP_003527164.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
Nc4]
gi|291580320|gb|ADE14777.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
Nc4]
Length = 188
Score = 39.6 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P +GYG I +G++++ HR++V L G V + Q + A +K
Sbjct: 126 PAEGYGIIEA----SNGEEIYFHRNSVLDGDFEQLEVGNEVRFHQEQGEKG--PQASTVK 179
Query: 72 LVPK 75
LV K
Sbjct: 180 LVGK 183
>gi|281347702|gb|EFB23286.1| hypothetical protein PANDA_020808 [Ailuropoda melanoleuca]
Length = 341
Score = 39.6 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 24 STESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLK 71
++ +DVF+H++A+ L ++ +G+ V +D V+ + A N+
Sbjct: 80 GNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG--AEAANVT 129
>gi|326801235|ref|YP_004319054.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
gi|326551999|gb|ADZ80384.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
Length = 282
Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G++KW++ KG+G I + +F+H +S L + G +V + +
Sbjct: 1 MFIGAVKWFDNQKGFGIIA----LPEEESLFVHIRGFSSTPLA-IDSGDVVIGEKKPDKK 55
Query: 62 NGKY 65
G Y
Sbjct: 56 KGGY 59
>gi|121603732|ref|YP_981061.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Polaromonas naphthalenivorans CJ2]
gi|120592701|gb|ABM36140.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Polaromonas naphthalenivorans CJ2]
Length = 181
Score = 39.3 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + + D G+GFI+ T GD+ + + +A+ L G V + Q A G
Sbjct: 114 GEVVRLDHDGGFGFIS----TPDGDEYYFNHDNLANTRFDQLRIGCPVQF-IAQAGAQG- 167
Query: 65 YSAENLKL 72
A+ + +
Sbjct: 168 PQAKRVSV 175
>gi|114798604|ref|YP_760614.1| cold shock DNA-binding membrane protein [Hyphomonas neptunium
ATCC 15444]
gi|114738778|gb|ABI76903.1| cold shock DNA-binding membrane protein [Hyphomonas neptunium
ATCC 15444]
Length = 214
Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
+N +G+GF+ G D F H A A ++ EG L +Y + D G+ A +
Sbjct: 24 WNEARGFGFLKAVD---GGPDAFAHIRAFAKEE-RHIEEGHLYSYQ-TETDEAGRLRAAD 78
Query: 70 LKLVPK 75
++ +
Sbjct: 79 IRPIRP 84
>gi|332980855|ref|YP_004462296.1| transcription termination factor Rho [Mahella australiensis 50-1
BON]
gi|332698533|gb|AEE95474.1| transcription termination factor Rho [Mahella australiensis 50-1
BON]
Length = 601
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
GYGF+ E DV++ +S + GL G LV Q K+ A
Sbjct: 232 GYGFLRSENYLPGNKDVYISQSQIRRFGLRT---GDLVKGKTRQAKEGEKFQA 281
>gi|119577018|gb|EAW56614.1| cold shock domain containing E1, RNA-binding, isoform CRA_c [Homo
sapiens]
Length = 206
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI +E +F H S L +L G V ++ + GK A L + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92
Query: 76 S 76
Sbjct: 93 E 93
Score = 34.6 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
+GFI ++F H S L L G V +
Sbjct: 166 FGFIERGDVV---KEIFFHYSEFKGD-LETLQPGDDVEFTI 202
>gi|294139378|ref|YP_003555356.1| cold shock domain family protein [Shewanella violacea DSS12]
gi|293325847|dbj|BAJ00578.1| cold shock domain family protein [Shewanella violacea DSS12]
Length = 158
Score = 39.3 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG---------DDVFLHRSAVASAGLFNLTEGQLV 52
+ +G + +N DKG GFI P+ S ++F+H SA+ G +
Sbjct: 18 MLKGILIRWNDDKGCGFIRPDASHVDMATLHGPASEQEIFIHISALKHMCRR-PELGDTI 76
Query: 53 TYDYVQNDANGKYSAEN 69
+ ++ + K +A
Sbjct: 77 FF-LIETKLDSKLNAIQ 92
>gi|288941319|ref|YP_003443559.1| ribonuclease R [Allochromatium vinosum DSM 180]
gi|288896691|gb|ADC62527.1| ribonuclease R [Allochromatium vinosum DSM 180]
Length = 806
Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ P+ E GDD++L+ + L G V D G+ ++++
Sbjct: 105 GFGFVRPD---EGGDDLYLY-----PKEMRALFHGDRVVVRVAGRDRRGRLEGAVVEILE 156
Query: 75 K 75
+
Sbjct: 157 R 157
>gi|74008938|ref|XP_537423.2| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 993
Score = 38.9 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 21 PEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENL 70
++ +DVF+H +A+ L ++ +G+ V +D V+ A N+
Sbjct: 686 VWEQNDTKEDVFVHLTAIKKNNPWKYLHSVGDGETVEFDVVEGQKG--EEAANV 737
>gi|330948979|gb|EGH49239.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 36
Score = 38.9 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
A+ S G +L EGQ VT+ + AE +++
Sbjct: 2 AIQSDGFKSLKEGQTVTFVAAKGQKG--MQAEEVQV 35
>gi|47224663|emb|CAG03647.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGD----DVFLHRS 36
G KW+N G+GFI+ S S DVF+H+S
Sbjct: 9 GFCKWFNVRMGFGFISMTHSEGSPVDPPLDVFVHQS 44
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62
S + G +L EG+ V + + ++
Sbjct: 103 SKLVMEGFRSLKEGEQVEFTFKKSTKG 129
>gi|254479468|ref|ZP_05092794.1| Rho termination factor, RNA-binding domain family
[Carboxydibrachium pacificum DSM 12653]
gi|214034591|gb|EEB75339.1| Rho termination factor, RNA-binding domain family
[Carboxydibrachium pacificum DSM 12653]
Length = 325
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
G+GF+ E T+ D+++ +S + G L G V + G KYSA
Sbjct: 118 GFGFLRVENFTQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 168
>gi|145477311|ref|XP_001424678.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391744|emb|CAK57280.1| unnamed protein product [Paramecium tetraurelia]
Length = 328
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYD 55
+ + G++K+Y+ + YGFI + + G D+F+H + AG+ +G ++ +
Sbjct: 243 IRYFGTLKFYDEARSYGFIIMD---QDGSDLFVHCDDLTKAGMTKDFLRTAKQGNIIRFS 299
Query: 56 YV----QNDANGKYSAENLKLV 73
++ N A +L+ +
Sbjct: 300 FLILEYFGKYNKSRKAVDLQFI 321
>gi|51244938|ref|YP_064822.1| cold-shock protein [Desulfotalea psychrophila LSv54]
gi|50875975|emb|CAG35815.1| similar to cold-shock protein [Desulfotalea psychrophila LSv54]
Length = 176
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G ++ +P + YGFI + +++ H +A+ + +L+EG V + D
Sbjct: 113 GIVRMVSPGESYGFIV----ESNEREIYFHENALKGFSIDDLSEGDSVYFAEEFGDKG-- 166
Query: 65 YSAENLKL 72
A +++
Sbjct: 167 PQATWVRV 174
>gi|27366480|ref|NP_762007.1| membrane protein [Vibrio vulnificus CMCP6]
gi|37676186|ref|NP_936582.1| hypothetical protein VVA0526 [Vibrio vulnificus YJ016]
gi|320158318|ref|YP_004190696.1| membrane protein [Vibrio vulnificus MO6-24/O]
gi|27358046|gb|AAO06997.1| membrane protein [Vibrio vulnificus CMCP6]
gi|37200727|dbj|BAC96552.1| predicted membrane protein [Vibrio vulnificus YJ016]
gi|319933630|gb|ADV88493.1| membrane protein [Vibrio vulnificus MO6-24/O]
Length = 200
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G I ++ DKG GFI +GS E ++ + G L +VT++ +N
Sbjct: 1 MAYKGRIAQWSHDKGNGFIKIDGSGE-----MVYFNKAEVIGSATLD--DVVTFEVERN- 52
Query: 61 ANGKYSAENLKL 72
+G+ A ++
Sbjct: 53 KHGQVVAVAVQK 64
>gi|254486969|ref|ZP_05100174.1| cold-shock DNA-binding domain protein [Roseobacter sp. GAI101]
gi|214043838|gb|EEB84476.1| cold-shock DNA-binding domain protein [Roseobacter sp. GAI101]
Length = 192
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
ST G V+ HR++V G +L EG V DA+ A ++ +
Sbjct: 133 STTDGRLVYFHRNSVVRNGYDDLNEGDTVELSVDAKDADEGPHASIVRPI 182
>gi|188587465|ref|YP_001919010.1| transcription termination factor Rho [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179352152|gb|ACB86422.1| transcription termination factor Rho [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 414
Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
GYGF+ P+G T +D+++ S + GL G LV+ N KY A
Sbjct: 61 GYGFLRPDGYTPGSNDIYISASQIKRFGLKT---GDLVSGKVRPPKDNEKYMA 110
>gi|302543102|ref|ZP_07295444.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460720|gb|EFL23813.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
53653]
Length = 77
Score = 38.5 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--- 58
+ +++ ++ ++G+G E+ + H S + AG L+ GQ V ++
Sbjct: 1 MVTATVREWHEEEGWG---VLDCVETPGGCWGHFSHIEMAGFATLSPGQHVELEWEAPGF 57
Query: 59 NDANGKYSAENLKLVPKSS 77
+Y A +++VP++
Sbjct: 58 EQDGYEYRA--VRIVPRTG 74
>gi|323704810|ref|ZP_08116387.1| transcription termination factor Rho [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535736|gb|EGB25510.1| transcription termination factor Rho [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 613
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ + + D+++ +S + G L G V
Sbjct: 256 GYGFLRVDNFIQGNKDIYISQSQIRRFG---LKVGDKV 290
>gi|20806667|ref|NP_621838.1| transcription termination factor Rho [Thermoanaerobacter
tengcongensis MB4]
gi|20515117|gb|AAM23442.1| Transcription termination factor [Thermoanaerobacter tengcongensis
MB4]
Length = 488
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
G+GF+ E T+ D+++ +S + G L G V + G KYSA
Sbjct: 131 GFGFLRVENFTQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 181
>gi|24373299|ref|NP_717342.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
gi|24347543|gb|AAN54786.1|AE015618_7 cold shock domain family protein [Shewanella oneidensis MR-1]
Length = 224
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60
+G + Y K YGFI + G+ FLH S + G L +G +V +D
Sbjct: 2 KGKVVSYLAAKKYGFIQGDD----GESYFLHFSELLDKKDEG--KLVKGSMVHFDPTPTP 55
Query: 61 ANGKYSAENL 70
A +L
Sbjct: 56 KGLAAKAISL 65
>gi|294952847|ref|XP_002787479.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
gi|239902481|gb|EER19275.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
Length = 740
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 23/96 (23%)
Query: 5 GSIKWYNPDKGYGFI--------TPEGSTESGDD--VFLHRSAVASAGLF---NLTEGQL 51
G + ++ +G+GFI +P DD +F+HR +A + L NL G
Sbjct: 320 GRVAKFDQARGFGFIYRSYEDSPSPSQKHHFEDDEVLFVHRKGIAGSTLDKPLNLDPGAP 379
Query: 52 VTYDYVQNDA---------NGKYSAENLKLVPKSSN 78
V Y V ++ + A ++ ++ ++
Sbjct: 380 VRY-LVSSERESAAAVSSTKTRDQAVDVSMLSDPTD 414
>gi|294876504|ref|XP_002767689.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
gi|239869477|gb|EER00407.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
Length = 546
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 23/96 (23%)
Query: 5 GSIKWYNPDKGYGFI--------TPEGSTESGDD--VFLHRSAVASAGLF---NLTEGQL 51
G + ++ +G+GFI +P DD +F+HR +A + L NL G
Sbjct: 125 GRVAKFDQARGFGFIYRSYEDSPSPSQKHHFEDDEVLFVHRKGIAGSTLDKPLNLDPGAP 184
Query: 52 VTYDYVQNDA---------NGKYSAENLKLVPKSSN 78
V Y V ++ + A ++ ++ ++
Sbjct: 185 VRY-LVSSERESAAAASSTKTRDQAVDVSMLSDPTD 219
>gi|108999824|ref|XP_001114640.1| PREDICTED: protein lin-28 homolog A-like [Macaca mulatta]
Length = 143
Score = 38.5 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ LH+S + G +L EG+ V + + ++
Sbjct: 6 ISLHQSKLHMEGFRSLKEGEAVEFTFKKSAKG 37
>gi|308803845|ref|XP_003079235.1| unnamed protein product [Ostreococcus tauri]
gi|116057690|emb|CAL53893.1| unnamed protein product [Ostreococcus tauri]
Length = 73
Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G++KW+N + +DVF+H+SA+ G + E V ++ +
Sbjct: 7 RASGTVKWFN-------------FDGSEDVFVHQSALTMDGFRSCWE---VRHEAAHSKR 50
Query: 62 NG 63
G
Sbjct: 51 RG 52
>gi|96771841|emb|CAI78423.1| putative cold-shock protein [Streptomyces ambofaciens ATCC 23877]
gi|114050278|emb|CAK51313.1| putative cold-shock protein [Streptomyces ambofaciens]
gi|117164385|emb|CAJ87929.1| putative cold-shock protein [Streptomyces ambofaciens ATCC 23877]
Length = 72
Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHR--SAVASAGLFNLTEGQLVTYDYVQN 59
+ G++ N ++G+GF + +G G DVF+ +++ +G L++G V +D +
Sbjct: 7 MASGTM---NAERGFGFTSQDG---GGPDVFVRYFSFSISGSGFRELSKGGQVFFDAAAD 60
Query: 60 D 60
Sbjct: 61 P 61
>gi|114778676|ref|ZP_01453488.1| exoribonuclease II [Mariprofundus ferrooxydans PV-1]
gi|114551038|gb|EAU53600.1| exoribonuclease II [Mariprofundus ferrooxydans PV-1]
Length = 707
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ EG + + + L G +V V G+ SAE +++V
Sbjct: 84 GFGFVDVEGREKGFF--------LPHEEMNGLMHGDIVEVRPV--RKRGRESAEVVRIVE 133
Query: 75 KSS 77
+S
Sbjct: 134 HAS 136
>gi|239930682|ref|ZP_04687635.1| hypothetical protein SghaA1_20843 [Streptomyces ghanaensis ATCC
14672]
gi|291439044|ref|ZP_06578434.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291341939|gb|EFE68895.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length = 74
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
+ +++ ++ ++G+G S E+ + H S + G L+ GQ V
Sbjct: 1 MVTATVREWHDEEGWG---VLDSPETPGGCWAHFSHIQVKGFRTLSPGQQV 48
>gi|330877321|gb|EGH11470.1| hypothetical protein PSYMP_17475 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 20
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 2 VHRGSIKWYNPDKGYGF 18
G++KW+N +KG+GF
Sbjct: 4 RQTGTVKWFNDEKGFGF 20
>gi|323450242|gb|EGB06124.1| hypothetical protein AURANDRAFT_65820 [Aureococcus anophagefferens]
Length = 2097
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
GF+ + DV+++ + V + G V +D N G+ +A N+ L
Sbjct: 1467 GFLRRDD---GAADVYVYLTDVRE---KKIAVGDPVVFDVKTN-KKGRLNAVNVAL 1515
>gi|119487523|ref|ZP_01621133.1| Cold-shock DNA-binding domain protein [Lyngbya sp. PCC 8106]
gi|119455692|gb|EAW36828.1| Cold-shock DNA-binding domain protein [Lyngbya sp. PCC 8106]
Length = 208
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P++GYGF+ +++ H+++V + LT G V Y Q + A +K
Sbjct: 129 PEEGYGFLRTIDV---DREIYFHKNSVLNNEFERLTVGTGVRYAEEQGEKG--PQATTVK 183
Query: 72 LV 73
+V
Sbjct: 184 IV 185
>gi|330467321|ref|YP_004405064.1| hypothetical protein VAB18032_16800 [Verrucosispora maris
AB-18-032]
gi|328810292|gb|AEB44464.1| hypothetical protein VAB18032_16800 [Verrucosispora maris
AB-18-032]
Length = 115
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG- 63
G ++ Y+ D+G+G I +G+ G ++H SA+A G L GQ V++ +G
Sbjct: 15 GVVRIYHGDEGWGVI--DGAEVPGG-CWVHFSAIAMNGYRQLAAGQGVSFIAEPMAQDGF 71
Query: 64 KYSAENL 70
Y A +
Sbjct: 72 AYRAVKV 78
>gi|218683037|ref|ZP_03530638.1| cold shock protein [Rhizobium etli CIAT 894]
Length = 233
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
G I + +KG+GF+ +G D +L + A L EGQ V YVQN
Sbjct: 167 GVIVKLSTEKGFGFVEIDGLPI---DAYLPLNKFAEDHSRPLREGQRVKVAYVQNKGR 221
Score = 37.3 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
++W++ GYGF+ S LH++A+ +++ EG ++ + V+ +
Sbjct: 95 VVEWFDRGLGYGFVKLADRDIS---AMLHKNALGPVSPYDIWEGDILVCELVEAEKG 148
>gi|145520026|ref|XP_001445874.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413340|emb|CAK78477.1| unnamed protein product [Paramecium tetraurelia]
Length = 178
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44
+G +K+Y+ K YGF+ + E G DVF+H + +AG+
Sbjct: 86 RQKGRMKFYDDAKKYGFLVLD---EDGTDVFVHYDDLQAAGIT 125
>gi|40062761|gb|AAR37655.1| cold shock protein [uncultured marine bacterium 439]
Length = 103
Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
G + + KGYGFIT + G+ F+H+ V L V Y ++
Sbjct: 6 TGIVVQF-GTKGYGFITGDD----GEKYFVHQKNVYDK--SRLRTNTRVKYRVETSEKG- 57
Query: 64 KYSAENL 70
A ++
Sbjct: 58 -LVAVDV 63
>gi|261329516|emb|CBH12498.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 381
Score = 38.1 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 18/75 (24%)
Query: 5 GSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFN-----------------L 46
G++ + +GYGFIT S+ D SA A + +
Sbjct: 47 GTVTSFMHRRGYGFITALQLSSSDSPDTQCLASAELEAAVRENAENFFFPRSSLDGGFYV 106
Query: 47 TEGQLVTYDYVQNDA 61
++GQ VT+D + +
Sbjct: 107 SQGQTVTFDVLPSPQ 121
>gi|72391420|ref|XP_846004.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62176690|gb|AAX70791.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802540|gb|AAZ12445.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 381
Score = 38.1 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 18/75 (24%)
Query: 5 GSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFN-----------------L 46
G++ + +GYGFIT S+ D SA A + +
Sbjct: 47 GTVTSFMHRRGYGFITALQLSSSDSPDTQCLASAELEAAVRENAENFFFPRSSLDGGFYV 106
Query: 47 TEGQLVTYDYVQNDA 61
++GQ VT+D + +
Sbjct: 107 SQGQTVTFDVLPSPQ 121
>gi|145539193|ref|XP_001455291.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423090|emb|CAK87894.1| unnamed protein product [Paramecium tetraurelia]
Length = 199
Score = 38.1 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYV 57
G +K+++ +K YGFI + + G D+F++ +A G L G + + +
Sbjct: 114 TGYLKFFDENKNYGFIVMD---QDGSDLFVYADDLAKTGISREYLRTAKFGNYIRFTFT 169
>gi|256751365|ref|ZP_05492244.1| transcription termination factor Rho [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749747|gb|EEU62772.1| transcription termination factor Rho [Thermoanaerobacter
ethanolicus CCSD1]
Length = 508
Score = 38.1 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
GYGF+ E + D+++ +S + G L G V + G KYSA
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 201
>gi|297543671|ref|YP_003675973.1| transcription termination factor Rho [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841446|gb|ADH59962.1| transcription termination factor Rho [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 508
Score = 38.1 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
GYGF+ E + D+++ +S + G L G V + G KYSA
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 201
>gi|167038495|ref|YP_001666073.1| transcription termination factor Rho [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167038762|ref|YP_001661747.1| transcription termination factor Rho [Thermoanaerobacter sp. X514]
gi|300913653|ref|ZP_07130970.1| transcription termination factor Rho [Thermoanaerobacter sp. X561]
gi|307723332|ref|YP_003903083.1| transcription termination factor Rho [Thermoanaerobacter sp. X513]
gi|320116891|ref|YP_004187050.1| transcription termination factor Rho [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166853002|gb|ABY91411.1| transcription termination factor Rho [Thermoanaerobacter sp. X514]
gi|166857329|gb|ABY95737.1| transcription termination factor Rho [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300890338|gb|EFK85483.1| transcription termination factor Rho [Thermoanaerobacter sp. X561]
gi|307580393|gb|ADN53792.1| transcription termination factor Rho [Thermoanaerobacter sp. X513]
gi|319929982|gb|ADV80667.1| transcription termination factor Rho [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 508
Score = 38.1 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
GYGF+ E + D+++ +S + G L G V + G KYSA
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 201
>gi|307265651|ref|ZP_07547204.1| transcription termination factor Rho [Thermoanaerobacter wiegelii
Rt8.B1]
gi|326389246|ref|ZP_08210814.1| transcription termination factor Rho [Thermoanaerobacter
ethanolicus JW 200]
gi|306919295|gb|EFN49516.1| transcription termination factor Rho [Thermoanaerobacter wiegelii
Rt8.B1]
gi|325994609|gb|EGD53033.1| transcription termination factor Rho [Thermoanaerobacter
ethanolicus JW 200]
Length = 508
Score = 38.1 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
GYGF+ E + D+++ +S + G L G V + G KYSA
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 201
>gi|289577384|ref|YP_003476011.1| transcription termination factor Rho [Thermoanaerobacter italicus
Ab9]
gi|289527097|gb|ADD01449.1| transcription termination factor Rho [Thermoanaerobacter italicus
Ab9]
Length = 508
Score = 38.1 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAE 68
GYGF+ E + D+++ +S + G L G V + G KYSA
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFG---LKVGDKVR-GITRIPREGEKYSAI 201
>gi|301758422|ref|XP_002915057.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog A-like
[Ailuropoda melanoleuca]
Length = 346
Score = 37.7 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTES-------GDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G+ KW++ +G F + +V ++ S + G ++L EG+ V + +
Sbjct: 104 GNCKWFSACRGLAFPSRTARRAGVALDLDPSMEVSVYGSQLHVGGFWSLKEGEAVQFTFK 163
Query: 58 QNDAN 62
++
Sbjct: 164 KSAKG 168
>gi|328544244|ref|YP_004304353.1| ribosome-associated factor Y [polymorphum gilvum SL003B-26A1]
gi|326413986|gb|ADZ71049.1| Ribosome-associated factor Y [Polymorphum gilvum SL003B-26A1]
Length = 183
Score = 37.7 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G+I +GYGFI + G +V+ R ++ + L V + D
Sbjct: 120 GTIDRLFEGEGYGFIRADD----GREVYFGRDSMTAGDWTALKVDTKVRFREESGDKG-- 173
Query: 65 YSAENLKLV 73
A ++ +V
Sbjct: 174 PYAASVAVV 182
>gi|326801474|ref|YP_004319293.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
gi|326552238|gb|ADZ80623.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
Length = 262
Score = 37.7 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G IKW+N KG+G + VF+H + NL+ + + +
Sbjct: 1 MEIGVIKWFNNSKGFG-----VADTVSGQVFVHIKSFKLKP-TNLSSRDAILFKRRVDPK 54
Query: 62 NGKYSAENLKLV 73
+ A + +LV
Sbjct: 55 SHNAVAIHSRLV 66
>gi|322834329|ref|YP_004214356.1| Cold-shock protein DNA-binding protein [Rahnella sp. Y9602]
gi|321169530|gb|ADW75229.1| Cold-shock protein DNA-binding protein [Rahnella sp. Y9602]
Length = 159
Score = 37.7 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
W+ DKG+GFI E + + A + + VT++ N+ SA
Sbjct: 8 WF-EDKGFGFIKDENGDN------RYFHVIKVANPELIKKDAAVTFEPTTNNKG--LSAF 58
Query: 69 NLKLVPKS 76
+K+ P+S
Sbjct: 59 AVKVEPES 66
>gi|304317934|ref|YP_003853079.1| transcription termination factor Rho [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779436|gb|ADL69995.1| transcription termination factor Rho [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 640
Score = 37.7 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ E + D+++ +S + G L G V
Sbjct: 283 GYGFLRVENFIQGNKDIYISQSQIRRFG---LKVGDKV 317
>gi|313885321|ref|ZP_07819072.1| ribonuclease R [Eremococcus coleocola ACS-139-V-Col8]
gi|312619427|gb|EFR30865.1| ribonuclease R [Eremococcus coleocola ACS-139-V-Col8]
Length = 812
Score = 37.7 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY---VQNDANGKYSAE 68
KG+GFI+ + D F + + +G V V AE
Sbjct: 79 NAKGFGFISVD---PEKPDYF-----LPPGKVGQAMDGDTVEIRVLREVDPQTGKGSEAE 130
Query: 69 NLKLVPKS 76
+++V ++
Sbjct: 131 VVRVVERA 138
>gi|218133365|ref|ZP_03462169.1| hypothetical protein BACPEC_01230 [Bacteroides pectinophilus ATCC
43243]
gi|217992238|gb|EEC58242.1| hypothetical protein BACPEC_01230 [Bacteroides pectinophilus ATCC
43243]
Length = 452
Score = 37.7 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
G+GFI E +DV++ S + GL G D VQ K S
Sbjct: 93 GFGFIRCENYLPGENDVYVAPSQIRRFGLKT---G-----DIVQGPKRAKNS 136
>gi|291563702|emb|CBL42518.1| RNAse R [butyrate-producing bacterium SS3/4]
Length = 776
Score = 37.7 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+G+GF+T EG DD+F + + +G V +N G+ A LK++
Sbjct: 82 RGFGFVTIEGRE---DDLF-----IPPDDTGDAMDGDTVQVVINENGRGGRTEARVLKVL 133
Query: 74 PKS 76
+
Sbjct: 134 KHA 136
>gi|312973902|ref|ZP_07788073.1| yecA family protein [Escherichia coli 1827-70]
gi|310331436|gb|EFP98692.1| yecA family protein [Escherichia coli 1827-70]
Length = 829
Score = 37.7 bits (87), Expect = 0.57, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 5 GSIKWY-------NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G++ W+ + + +GF+ E G+++F H++ ++ + + V +
Sbjct: 249 GNVLWFGGYNSKTDRENNFGFLLSEN----GNELFFHKNEISRN--YTPADNTPVLFR-E 301
Query: 58 QNDANGKYSAENLKLVPKSSN 78
NGK +A N+ ++ K+ +
Sbjct: 302 GTGKNGKPTAFNVHILDKTDD 322
>gi|82702034|ref|YP_411600.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Nitrosospira multiformis ATCC 25196]
gi|82410099|gb|ABB74208.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Nitrosospira multiformis ATCC 25196]
Length = 195
Score = 37.7 bits (87), Expect = 0.57, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + P++GYGF+ T SG +++ HR +A+ L EG V + +++ +
Sbjct: 114 GKVVRLMPEEGYGFVE----TSSGQELYFHRENLANNNFEQLEEGSEVQF--LEDIGSEG 167
Query: 65 YSAENLK 71
+ A+ +
Sbjct: 168 FQAKRVS 174
>gi|119897463|ref|YP_932676.1| hypothetical protein azo1172 [Azoarcus sp. BH72]
gi|119669876|emb|CAL93789.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 51
Score = 37.7 bits (87), Expect = 0.57, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
M H+G I + DKG+GFITP G+ VF+H SA A+
Sbjct: 1 MRHQGHISSWKDDKGFGFITPA---AGGEKVFVHISAFAN 37
>gi|266621437|ref|ZP_06114372.1| transcription termination factor Rho [Clostridium hathewayi DSM
13479]
gi|288866877|gb|EFC99175.1| transcription termination factor Rho [Clostridium hathewayi DSM
13479]
Length = 570
Score = 37.7 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
G+GFI E +DV++ S + + G D +Q K +AE
Sbjct: 209 GFGFIRCENYLPGENDVYVAPSQIRRFNMKT---G-----DIIQGSRRVKTAAE 254
>gi|85373091|ref|YP_457153.1| hypothetical protein ELI_01320 [Erythrobacter litoralis HTCC2594]
gi|84786174|gb|ABC62356.1| hypothetical protein ELI_01320 [Erythrobacter litoralis HTCC2594]
Length = 89
Score = 37.7 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G IK Y+ G G IT E + GD + ++ + G Q +Y+ + D
Sbjct: 6 MTHYGKIKSYDSSSGTGSITAE---KGGDVLRFKKADLQQEG-QMPKVDQRFSYETSEVD 61
Query: 61 ANGKYSAENLK 71
GK A NL+
Sbjct: 62 -GGKKQAVNLQ 71
>gi|42561375|ref|NP_975826.1| ribonuclease R [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492873|emb|CAE77468.1| Ribonulease R [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301321071|gb|ADK69714.1| putative ribonuclease R [Mycoplasma mycoides subsp. mycoides SC
str. Gladysdale]
Length = 704
Score = 37.3 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G+IK NP KG+GFI + + G+D F+ R + ++ V Y Q + +
Sbjct: 62 KKGTIK-LNP-KGFGFIN-DINKIDGEDHFIARVDLNNSIHQ-----DEVVYILKQEE-D 112
Query: 63 GKYSAENLKLVPK 75
+ A ++L+ +
Sbjct: 113 NRLKAIVIELIKR 125
>gi|50956442|gb|AAT90749.1| CspA [Bifidobacterium animalis subsp. lactis]
Length = 44
Score = 37.3 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
VF+H S++ + G L +G LV YD D G+ + +K+
Sbjct: 1 VFVHYSSIEAEGFKALRQGDLVEYDSKPTDK-GELATRVVKI 41
>gi|149184304|ref|ZP_01862622.1| hypothetical protein ED21_26338 [Erythrobacter sp. SD-21]
gi|148831624|gb|EDL50057.1| hypothetical protein ED21_26338 [Erythrobacter sp. SD-21]
Length = 85
Score = 37.3 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G+IK Y+ G G I PE + G+ + ++ + GQ +Y+ Q D
Sbjct: 1 MTHFGTIKRYDSSTGNGSIAPE---KGGNVLDFGKADLQQEA-SEPESGQRFSYETKQAD 56
Query: 61 ANGKYSAENLKLVPKSSN 78
GK A NL+ + +
Sbjct: 57 -GGKQRAVNLQQQEQGHS 73
>gi|240115680|ref|ZP_04729742.1| CspA [Neisseria gonorrhoeae PID18]
gi|240117975|ref|ZP_04732037.1| CspA [Neisseria gonorrhoeae PID1]
gi|268601355|ref|ZP_06135522.1| CspA [Neisseria gonorrhoeae PID18]
gi|268603683|ref|ZP_06137850.1| CspA [Neisseria gonorrhoeae PID1]
gi|268585486|gb|EEZ50162.1| CspA [Neisseria gonorrhoeae PID18]
gi|268587814|gb|EEZ52490.1| CspA [Neisseria gonorrhoeae PID1]
Length = 192
Score = 37.3 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ +
Sbjct: 3 GFVKWYSYEKDFGFIFGED----GHEYFFRKSAGSD------IPGQIVNFEPFEHSRGLR 52
>gi|111052677|gb|ABH03579.1| CspA [Neisseria gonorrhoeae]
Length = 192
Score = 37.3 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ +
Sbjct: 3 GFVKWYSYEKDFGFIFGED----GHEYFFRKSAGSD------IPGQIVNFEPFEHSRGLR 52
>gi|218779797|ref|YP_002431115.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
gi|218761181|gb|ACL03647.1| cold-shock DNA-binding domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 409
Score = 37.3 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGFI + G ++F HR+ + +L E V Y ND A ++ V
Sbjct: 259 GYGFIRTDTP---GKNMFFHRTNLLDVEFDDLCEYDEVEYIPGMNDRG--ECALDVTRVA 313
Query: 75 KSSN 78
N
Sbjct: 314 AVGN 317
>gi|145480979|ref|XP_001426512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393587|emb|CAK59114.1| unnamed protein product [Paramecium tetraurelia]
Length = 190
Score = 37.3 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
G +K+++ +K YGFI + G D+F++ + G+
Sbjct: 106 GFLKFFDENKNYGFIVMDS---DGSDIFVYADDLTKTGI 141
>gi|295697776|ref|YP_003591014.1| transcription termination factor Rho [Bacillus tusciae DSM 2912]
gi|295413378|gb|ADG07870.1| transcription termination factor Rho [Bacillus tusciae DSM 2912]
Length = 418
Score = 37.3 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
GYGF+ P G S +D+++ S + L G V+
Sbjct: 61 GYGFLRPIGYLPSNEDIYVAASQIRRFDLRT---GDRVS 96
>gi|182678206|ref|YP_001832352.1| cold-shock protein DNA-binding [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182634089|gb|ACB94863.1| Cold-shock protein DNA-binding [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 188
Score = 37.3 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M G I P + YGFI D++ R+AV ++ G V +
Sbjct: 117 MGETGVISKLFPQQNYGFIEV----RGAGDLYFTRNAVQRGDFDSMEVGNQVVITRATTE 172
Query: 61 ANGKYSAENLKLVPK 75
A +++ V
Sbjct: 173 GPMGPQASSVRRVES 187
>gi|322802596|gb|EFZ22889.1| hypothetical protein SINV_03993 [Solenopsis invicta]
Length = 331
Score = 37.3 bits (86), Expect = 0.74, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 25 TESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
++ +DVF+H+SA+ + ++ +G++V +D V + + A N+
Sbjct: 1 NDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGEKG--HEAANVT 49
>gi|307152296|ref|YP_003887680.1| cold-shock protein DNA-binding protein [Cyanothece sp. PCC 7822]
gi|306982524|gb|ADN14405.1| Cold-shock protein DNA-binding protein [Cyanothece sp. PCC 7822]
Length = 207
Score = 37.3 bits (86), Expect = 0.74, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGF+ T G++++ HR++V L G V Y +++D + A +++V K
Sbjct: 134 YGFLK----TLDGEEIYFHRNSVLHNDFERLAVGTGVRYSAIEDDQGPR--ATTVQIVDK 187
Query: 76 SS 77
Sbjct: 188 PG 189
>gi|330445011|ref|ZP_08308665.1| ribonuclease R [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328493129|dbj|GAA03162.1| ribonuclease R [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 855
Score = 37.3 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ PEGS DD+ + + + ++ G + D G+ A ++++
Sbjct: 102 GFGFLRPEGSLGKDDDLL-----LPNHQMRSVLHGDYILAQAAGEDKRGRKEARVVRVLQ 156
Query: 75 KS 76
++
Sbjct: 157 ET 158
>gi|326801850|ref|YP_004319669.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
gi|326552614|gb|ADZ80999.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
Length = 50
Score = 37.3 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 22/71 (30%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ G ++ +N +G+GF P+ + E VTY VQ
Sbjct: 1 MQEGIVRIFNGSRGFGFTIPQRGK--------------------IHENDQVTYKVVQRSK 40
Query: 62 NGKYSAENLKL 72
SA LK+
Sbjct: 41 G--LSAIELKI 49
>gi|90581368|ref|ZP_01237164.1| putative Exoribonuclease R [Vibrio angustum S14]
gi|90437478|gb|EAS62673.1| putative Exoribonuclease R [Vibrio angustum S14]
Length = 852
Score = 37.3 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ PEGS +D+ L + + G + D G+ A ++++
Sbjct: 102 GFGFLRPEGSLGKDNDLLLPHHQ-----MRGVIHGDYILAQAGGEDKRGRKEARVVRVLK 156
Query: 75 KSS 77
+S+
Sbjct: 157 EST 159
>gi|109080056|ref|XP_001098123.1| PREDICTED: cold shock domain-containing protein E1-like [Macaca
mulatta]
Length = 133
Score = 37.3 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+GFI E +F H + V GL L G V + + GK + N+ V +
Sbjct: 20 FGFINYEVG--DSKKLFFHVNEVE-DGL-ELQAGDEVEFSVTLHQRTGKCNTWNVWRVCE 75
Query: 76 SS 77
Sbjct: 76 GP 77
>gi|284038322|ref|YP_003388252.1| hypothetical protein Slin_3445 [Spirosoma linguale DSM 74]
gi|283817615|gb|ADB39453.1| protein of unknown function DUF88 [Spirosoma linguale DSM 74]
Length = 338
Score = 37.3 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
GYGF+ +++F H +++ L V + +N GK A +++L+
Sbjct: 284 GYGFVN-----YPPNNLFFHYTSLIDTDFNELQVDDEVEFTVGRNAE-GKDIAIDVRLL 336
>gi|327540621|gb|EGF27195.1| cold shock protein scoF [Rhodopirellula baltica WH47]
Length = 41
Score = 37.3 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
+F H S+V +L EGQ VT++ + + AEN+++
Sbjct: 1 MFFHSSSVEGVNFDDLREGQQVTFNEARGEKG--PCAENVQV 40
>gi|260440507|ref|ZP_05794323.1| CspA [Neisseria gonorrhoeae DGI2]
gi|291043812|ref|ZP_06569528.1| cold shock protein cspA [Neisseria gonorrhoeae DGI2]
gi|291012275|gb|EFE04264.1| cold shock protein cspA [Neisseria gonorrhoeae DGI2]
Length = 192
Score = 37.3 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ +
Sbjct: 3 GFVKWYSYEKDFGFIFGED----GHEYFFRKSAGSD------IPGQIVNFEPFEHSRGLR 52
>gi|153003332|ref|YP_001377657.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter
sp. Fw109-5]
gi|152026905|gb|ABS24673.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 197
Score = 37.3 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGF+ G DV+ H +AV L G+ V + V+ + A + +P
Sbjct: 132 YGFLRTAD----GRDVYFHANAVLRGLFSRLRVGRAVRF--VETRGDEGPQASTVDPLPA 185
>gi|160900686|ref|YP_001566268.1| cold-shock DNA-binding domain-containing protein [Delftia
acidovorans SPH-1]
gi|160366270|gb|ABX37883.1| cold-shock DNA-binding domain protein [Delftia acidovorans SPH-1]
Length = 219
Score = 37.3 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M +G + + ++G+GFI P+G G VF+H + + V+Y +
Sbjct: 1 MRQQGRLTGWKDEQGFGFIEPDG---GGAQVFVHIKSFTDRRRRPEGG-ERVSY-VASRN 55
Query: 61 ANGKYSAENLKLVPK 75
A GK+ A+++ + +
Sbjct: 56 AQGKWRAQDVAFIGE 70
>gi|240112925|ref|ZP_04727415.1| CspA [Neisseria gonorrhoeae MS11]
gi|268599002|ref|ZP_06133169.1| CspA [Neisseria gonorrhoeae MS11]
gi|15004539|gb|AAK77142.1|AF374415_5 CspA [Neisseria gonorrhoeae]
gi|58891396|gb|AAW83084.1| CspA [Neisseria gonorrhoeae]
gi|268583133|gb|EEZ47809.1| CspA [Neisseria gonorrhoeae MS11]
Length = 192
Score = 37.3 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ +
Sbjct: 3 GFVKWYSYEKDFGFIFGED----GHEYFFRKSAGSD------IPGQIVNFEPFEHSRGLR 52
>gi|307324672|ref|ZP_07603878.1| putative cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306889554|gb|EFN20534.1| putative cold-shock DNA-binding domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 74
Score = 36.9 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
+ +++ ++ ++G+G S E+ F H S + G L+ GQ V +
Sbjct: 1 MVTATVREWSDEEGWG---VLDSPETPGGCFGHFSDIQVTGFRTLSPGQQVDLE 51
>gi|224825435|ref|ZP_03698540.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
gi|224602356|gb|EEG08534.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
Length = 181
Score = 36.9 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
G+GFI E G+D + + L+EG V + + A+ +
Sbjct: 122 GFGFIEGED----GNDYYFSAENLVDQAFDKLSEGMAVKFLPEAAQEG--WQAKRVS 172
>gi|301336862|ref|ZP_07225064.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum MopnTet14]
Length = 692
Score = 36.9 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P KG+GF++P+ D+F+ S + A +G V + G+ +
Sbjct: 27 PKKGFGFVSPDQPDLYPFDIFVPASDLKGA-----LDGDHVLVALPFSQRGGEKRKGVIH 81
Query: 72 LV 73
V
Sbjct: 82 KV 83
>gi|15835291|ref|NP_297050.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
gi|270285465|ref|ZP_06194859.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
gi|270289476|ref|ZP_06195778.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Weiss]
gi|14195179|sp|Q9PK00|RNR_CHLMU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|8163286|gb|AAF73588.1| exoribonuclease, VacB/Rnb family [Chlamydia muridarum Nigg]
Length = 692
Score = 36.9 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P KG+GF++P+ D+F+ S + A +G V + G+ +
Sbjct: 27 PKKGFGFVSPDQPDLYPFDIFVPASDLKGA-----LDGDHVLVALPFSQRGGEKRKGVIH 81
Query: 72 LV 73
V
Sbjct: 82 KV 83
>gi|194098626|ref|YP_002001688.1| CspA [Neisseria gonorrhoeae NCCP11945]
gi|193933916|gb|ACF29740.1| CspA [Neisseria gonorrhoeae NCCP11945]
Length = 195
Score = 36.9 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ +
Sbjct: 3 GFVKWYSYEKDFGFIFGED----GHEYFFRKSAGSD------IPGQIVNFEPFEHSRGLR 52
>gi|240128234|ref|ZP_04740895.1| CspA [Neisseria gonorrhoeae SK-93-1035]
gi|268686627|ref|ZP_06153489.1| CspA [Neisseria gonorrhoeae SK-93-1035]
gi|268626911|gb|EEZ59311.1| CspA [Neisseria gonorrhoeae SK-93-1035]
Length = 192
Score = 36.9 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ +
Sbjct: 3 GFVKWYSYEKDFGFIFGED----GHEYFFRKSAGSD------IPGQIVNFEPFEHSRGLR 52
>gi|145542648|ref|XP_001457011.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424825|emb|CAK89614.1| unnamed protein product [Paramecium tetraurelia]
Length = 190
Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
G +K+++ +K YGFI + G D+F++ +A G+
Sbjct: 106 GFLKFFDENKNYGFIVMDS---DGSDIFVYADDLAKTGI 141
>gi|332859904|ref|XP_003317312.1| PREDICTED: cold shock domain-containing protein C2-like [Pan
troglodytes]
Length = 168
Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
+G K ++ +G+GFITPE +D+F+H S
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSEPRPN 104
>gi|332231339|ref|XP_003264854.1| PREDICTED: cold shock domain-containing protein C2-like [Nomascus
leucogenys]
Length = 168
Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
+G K ++ +G+GFITPE +D+F+H S
Sbjct: 70 KGVCKQFSRSQGHGFITPEN---GSEDIFVHVSEPRPN 104
>gi|84623636|ref|YP_451008.1| hypothetical protein XOO_1979 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|121632095|ref|YP_001001457.1| integral membrane protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188576851|ref|YP_001913780.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188577043|ref|YP_001913972.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|84367576|dbj|BAE68734.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|116247011|gb|ABJ89937.1| integral membrane protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188521303|gb|ACD59248.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521495|gb|ACD59440.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 60
Score = 36.9 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M ++G ++ +N KG GF TP G GD F+H SA A G+++TY ++
Sbjct: 1 MRYQGRLRDWNDHKGVGFATPNG---GGDRAFVHISAFAQQSRR-PRNGEIITYAIERDA 56
Query: 61 AN 62
Sbjct: 57 QK 58
>gi|145488336|ref|XP_001430172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397268|emb|CAK62774.1| unnamed protein product [Paramecium tetraurelia]
Length = 328
Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYD 55
+ + G++K+Y+ + YGFI + G D+F+H + AG+ G ++ +
Sbjct: 243 IRYFGTLKFYDEARAYGFIIMD---LDGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFS 299
Query: 56 YV----QNDANGKYSAENLKLVPKSS 77
++ N A +L+ +
Sbjct: 300 FLILEYFGKYNKSKKAVDLQFIQSQP 325
>gi|288553915|ref|YP_003425850.1| hypothetical protein BpOF4_04470 [Bacillus pseudofirmus OF4]
gi|288545075|gb|ADC48958.1| hypothetical protein BpOF4_04470 [Bacillus pseudofirmus OF4]
Length = 95
Score = 36.9 bits (85), Expect = 0.94, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
W+N +GYG + DVF+HR +V S G VTY+ + +
Sbjct: 44 WFNTARGYG--------YTEKDVFIHRDSVISG---EPRPGAAVTYELKETRKGKR 88
>gi|210608520|ref|ZP_03287896.1| hypothetical protein CLONEX_00075 [Clostridium nexile DSM 1787]
gi|210153011|gb|EEA84017.1| hypothetical protein CLONEX_00075 [Clostridium nexile DSM 1787]
Length = 441
Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
GYGFI + +DV++ S + GL G D + + K AE
Sbjct: 82 GYGFIRSDNYLPGENDVYVSPSQIRRFGLKT---G-----DIISGNTRIKTQAE 127
>gi|163749192|ref|ZP_02156442.1| cold shock domain family protein [Shewanella benthica KT99]
gi|161331262|gb|EDQ02151.1| cold shock domain family protein [Shewanella benthica KT99]
Length = 147
Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG---------DDVFLHRSAVASAGLFNLTEGQLV 52
+ +G + +N DKG+G I P+ S D+ +H S + +
Sbjct: 5 MLKGVLIHWNDDKGFGLIRPDASHADMATLHGPASEQDISIHISVLKHMSRR-PKIWDTI 63
Query: 53 TYDYVQNDANGKYSAENLKLVPKSSN 78
+ ++ + K +A + +N
Sbjct: 64 FF-LIETKLDSKLNAIQAHIEGVEAN 88
>gi|269303381|gb|ACZ33481.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila
pneumoniae LPCoLN]
Length = 659
Score = 36.9 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
KG+GF++P+ E D+F+ + A +G V + +G+
Sbjct: 13 ARKGFGFVSPDNPEEYPFDIFVPARDLRGA-----LDGDHVIVSVLPYPRDGQ 60
>gi|15618415|ref|NP_224700.1| ribonuclease family protein [Chlamydophila pneumoniae CWL029]
gi|15836035|ref|NP_300559.1| ribonuclease family protein [Chlamydophila pneumoniae J138]
gi|16752538|ref|NP_444800.1| VacB/Rnb family exoribonuclease [Chlamydophila pneumoniae AR39]
gi|33241856|ref|NP_876797.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
gi|7674336|sp|Q9Z848|RNR_CHLPN RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|4376791|gb|AAD18644.1| ribonuclease family [Chlamydophila pneumoniae CWL029]
gi|8163396|gb|AAF73648.1| exoribonuclease, VacB/Rnb family [Chlamydophila pneumoniae AR39]
gi|8978874|dbj|BAA98710.1| ribonuclease family [Chlamydophila pneumoniae J138]
gi|33236365|gb|AAP98454.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
Length = 676
Score = 36.9 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
KG+GF++P+ E D+F+ + A +G V + +G+
Sbjct: 30 ARKGFGFVSPDNPEEYPFDIFVPARDLRGA-----LDGDHVIVSVLPYPRDGQ 77
>gi|223365689|pdb|2KCM|A Chain A, Solution Nmr Structure Of The N-Terminal Ob-Domain Of
So_1732 From Shewanella Oneidensis. Northeast
Structural Genomics Consortium Target Sor210a
Length = 74
Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDAN 62
+G + Y K YGFI + G+ FLH S + L +G +V +D
Sbjct: 2 KGKVVSYLAAKKYGFIQGDD----GESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKG 57
Query: 63 GKYSAENL 70
A +L
Sbjct: 58 LAAKAISL 65
>gi|119946330|ref|YP_944010.1| cold-shock DNA-binding domain-containing protein [Psychromonas
ingrahamii 37]
gi|119864934|gb|ABM04411.1| cold-shock DNA-binding domain protein [Psychromonas ingrahamii 37]
Length = 189
Score = 36.9 bits (85), Expect = 1.00, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
G D++ HR+++ +G L G V + D A +++L+ K
Sbjct: 137 DGRDIYFHRNSLVDSGFDALEIGNEVRFVEEAGDQG--PQASSVRLIGK 183
>gi|20807463|ref|NP_622634.1| exoribonuclease [Thermoanaerobacter tengcongensis MB4]
gi|20515989|gb|AAM24238.1| Exoribonucleases [Thermoanaerobacter tengcongensis MB4]
Length = 708
Score = 36.9 bits (85), Expect = 1.00, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+GYGF+ PE + D+F+ S + A +G LV ++ E +K++
Sbjct: 77 RGYGFLIPE--EQGIKDIFIPISGMNGA-----MDGDLVLVRVIEGAEGKSQEGEVVKIL 129
Query: 74 PKS 76
++
Sbjct: 130 KRA 132
>gi|224373280|ref|YP_002607652.1| ribonuclease R [Nautilia profundicola AmH]
gi|223588858|gb|ACM92594.1| ribonuclease R [Nautilia profundicola AmH]
Length = 652
Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
KG+GF+TP G E D + + AG +L + + ++ G+ A+ + +
Sbjct: 55 KKGFGFLTPLGVKE--KDYLIEAEHLNGAGRGDLVIAEKL-FN-----KKGRPKAKVVYI 106
Query: 73 VPKS 76
+ K+
Sbjct: 107 LEKA 110
>gi|118382335|ref|XP_001024325.1| hypothetical protein TTHERM_00532020 [Tetrahymena thermophila]
gi|89306092|gb|EAS04080.1| hypothetical protein TTHERM_00532020 [Tetrahymena thermophila
SB210]
Length = 452
Score = 36.6 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTE 48
GS+K+++ K +GF + G D+F++ + AG+ L E
Sbjct: 305 TGSLKFFDEKKNFGFFVLDS---DGSDIFVYYDDLEQAGITKKMLKE 348
>gi|17646566|gb|AAL40978.1|AF447860_7 Rnr-like protein [Methylococcus capsulatus]
Length = 613
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ P+ D+F ++ + L V D G+ A ++++
Sbjct: 34 GFGFLHPDD---GSADLF-----ISPKDMRALIHDDRVVVSVRGIDRRGRREAAVVQVLE 85
Query: 75 K 75
+
Sbjct: 86 R 86
>gi|53803948|ref|YP_114408.1| ribonuclease R [Methylococcus capsulatus str. Bath]
gi|53757709|gb|AAU92000.1| ribonuclease R [Methylococcus capsulatus str. Bath]
Length = 755
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ P+ D+F ++ + L V D G+ A ++++
Sbjct: 110 GFGFLHPDD---GSADLF-----ISPKDMRALIHDDRVVVSVRGIDRRGRREAAVVQVLE 161
Query: 75 K 75
+
Sbjct: 162 R 162
>gi|120553170|ref|YP_957521.1| cold-shock DNA-binding domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120323019|gb|ABM17334.1| putative cold-shock DNA-binding domain protein [Marinobacter
aquaeolei VT8]
Length = 1036
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 4 RGSIKWYNPDKG--YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
G+IK K +GF+ +G GD+V S+V + EG V++
Sbjct: 973 TGTIK----TKRSTFGFVKVDGR---GDEVLFPASSVEDGLWDAMIEGDRVSFSL 1020
>gi|119629320|gb|EAX08915.1| hCG1795283 [Homo sapiens]
Length = 222
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
D+ +H+S + G + E + V + SAENL + ++ +
Sbjct: 89 DIIVHQSKLHVEGFQSWKEDEAVDFTLSAFGKK---SAENLYALSEAPS 134
>gi|145486210|ref|XP_001429112.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396202|emb|CAK61714.1| unnamed protein product [Paramecium tetraurelia]
Length = 330
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYD 55
+ + G++K+Y+ + YGFI + G D+F+H + AG+ G ++ +
Sbjct: 245 IRYFGTLKFYDEARSYGFIIMD---MDGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFS 301
Query: 56 YV----QNDANGKYSAENLKLV 73
++ N A +L+ +
Sbjct: 302 FLILEYFGKYNKSRKAVDLQFI 323
>gi|327285408|ref|XP_003227425.1| PREDICTED: protein lin-28 homolog A-like [Anolis carolinensis]
Length = 151
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62
S + G +L EG+ V + + ++
Sbjct: 20 SKLHMEGFRSLKEGEAVEFTFKKSSKG 46
>gi|313665029|ref|YP_004046900.1| ribonuclease R [Mycoplasma leachii PG50]
gi|312949314|gb|ADR23910.1| putative ribonuclease R [Mycoplasma leachii PG50]
Length = 704
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G+IK NP KG+GFI + + G+D F+ + ++ V Y Q + +
Sbjct: 62 KKGTIK-LNP-KGFGFIN-DINEIDGEDHFIAGVDLNNSIHQ-----DEVVYILKQEE-D 112
Query: 63 GKYSAENLKLVPK 75
+ A + L+ +
Sbjct: 113 NRLKAIVIDLIKR 125
>gi|291550089|emb|CBL26351.1| transcription termination factor Rho [Ruminococcus torques L2-14]
Length = 446
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLV 52
GYGFI + DV++ S + GL LT V
Sbjct: 87 GYGFIRSDNYLPGDGDVYVAPSQIRRFGLKTGDILTGNTRV 127
>gi|326338225|gb|EGD62054.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1125]
Length = 39
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
G L GQ V +D Q A + V +
Sbjct: 1 MDGYRTLKAGQSVQFDVHQGPKGN--HASVIVPVEVEA 36
>gi|283478943|emb|CAY74859.1| Cold shock-like protein cspD (CPS-D) [Erwinia pyrifoliae DSM
12163]
Length = 40
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
G L GQ V +D Q A + V +
Sbjct: 1 MDGYRTLKAGQQVQFDVHQGPKGN--HASLIVPVEE 34
>gi|218290978|ref|ZP_03495026.1| ribonuclease R [Alicyclobacillus acidocaldarius LAA1]
gi|218239060|gb|EED06264.1| ribonuclease R [Alicyclobacillus acidocaldarius LAA1]
Length = 896
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA---- 67
+GYGF+ P+ E D+++ +SA+ A G V + + A
Sbjct: 70 KARGYGFVIPDDEAE--ADIYIPQSALNGA-----MSGDRVLVRLRE-ERGKGAQAHREG 121
Query: 68 ENLKLVPKSSN 78
E +K++ + ++
Sbjct: 122 EIVKILERGND 132
>gi|89075976|ref|ZP_01162348.1| putative Exoribonuclease R [Photobacterium sp. SKA34]
gi|89048325|gb|EAR53904.1| putative Exoribonuclease R [Photobacterium sp. SKA34]
Length = 852
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ PEGS +D+ L + + G + D G+ A ++++
Sbjct: 102 GFGFLRPEGSLGKDNDLLLPHHQ-----MRGVIHGDYILAQAGGEDKRGRKEARVVRVLK 156
Query: 75 KSS 77
+++
Sbjct: 157 ETT 159
>gi|145490580|ref|XP_001431290.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398394|emb|CAK63892.1| unnamed protein product [Paramecium tetraurelia]
Length = 328
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-----FNLTEGQLVTYD 55
+ + G++K+Y+ + YGFI + G D+F+H + AG+ G ++ +
Sbjct: 243 IRYFGTLKFYDEARSYGFIIMD---MDGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFS 299
Query: 56 YV----QNDANGKYSAENLKLV 73
++ N A +L+ +
Sbjct: 300 FLILEYFGKYNKSRKAVDLQFI 321
>gi|224081663|ref|XP_002192271.1| PREDICTED: lin-28 homolog [Taeniopygia guttata]
Length = 134
Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62
S + G +L EG+ V + + ++
Sbjct: 3 SKLHMEGFRSLKEGEAVEFTFKKSSKG 29
>gi|156743639|ref|YP_001433768.1| transcription termination factor Rho [Roseiflexus castenholzii DSM
13941]
gi|156234967|gb|ABU59750.1| transcription termination factor Rho [Roseiflexus castenholzii DSM
13941]
Length = 445
Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ E DDV++ +S + GL G V
Sbjct: 91 GYGFLRGERMLPGPDDVYVSQSQIRRFGLRT---GDRV 125
>gi|284036854|ref|YP_003386784.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM
74]
gi|283816147|gb|ADB37985.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM
74]
Length = 290
Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
G +K Y P+KG+GF++ +++ DVF H V +
Sbjct: 6 GVVKKYFPEKGFGFVSHPLDSKTRQDVFFHIKNVQKS 42
>gi|330828260|ref|YP_004391212.1| ribonuclease R [Aeromonas veronii B565]
gi|328803396|gb|AEB48595.1| Ribonuclease R [Aeromonas veronii B565]
Length = 797
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ PEG G D++L+ + L G V + D G+ A ++L+
Sbjct: 96 GFGFLRPEG---GGPDLYLNNREMQR-----LMHGDYVLVQPTEIDRKGRQEARLVRLLK 147
Query: 75 K 75
Sbjct: 148 S 148
>gi|319780672|ref|YP_004140148.1| hypothetical protein Mesci_0933 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166560|gb|ADV10098.1| protein of unknown function DUF805 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 236
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
RG + Y+ +G+GFIT G+ R + + +G V + G
Sbjct: 2 RGKVLHYDEVQGFGFITGAD----GNRYTFTRENLRRE--TTMRKGAGVEFQA------G 49
Query: 64 KYSAENLKLVPKSS 77
A ++ L+ +
Sbjct: 50 GGQARDVFLIAAET 63
>gi|145589452|ref|YP_001156049.1| ribonuclease R [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047858|gb|ABP34485.1| RNAse R [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 795
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
G+GF+ P+ G+D+FL ++ G V + D G+ + +++V
Sbjct: 24 GFGFVIPDD---GGEDIFLSEREMSRVMH-----GDRVNVRVLGTDRRGRPEGQIVEVV 74
>gi|148657328|ref|YP_001277533.1| transcription termination factor Rho [Roseiflexus sp. RS-1]
gi|148569438|gb|ABQ91583.1| transcription termination factor Rho [Roseiflexus sp. RS-1]
Length = 444
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ E +DV++ +S + GL G V
Sbjct: 90 GYGFLRGERMLPGPNDVYVSQSQIRRFGLRT---GDRV 124
>gi|302384866|ref|YP_003820688.1| transcription termination factor Rho [Clostridium saccharolyticum
WM1]
gi|302195494|gb|ADL03065.1| transcription termination factor Rho [Clostridium saccharolyticum
WM1]
Length = 538
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
G+GFI E +DV++ S + + G D + K +AE
Sbjct: 177 GFGFIRCENYLPGENDVYVAPSQIRRFNMKT---G-----DIIHGSRRVKTAAE 222
>gi|74316626|ref|YP_314366.1| RNAse R [Thiobacillus denitrificans ATCC 25259]
gi|74056121|gb|AAZ96561.1| exoribonuclease II [Thiobacillus denitrificans ATCC 25259]
Length = 758
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ PE E GDD+FL L G V D G+ A+ ++++
Sbjct: 112 GFGFVVPE---EGGDDLFLS----PKEMHRVLH-GDKVLVRVAGFDRRGRREAKIVEVLE 163
>gi|300766473|ref|ZP_07076425.1| transcription termination factor Rho [Listeria monocytogenes FSL
N1-017]
gi|300512812|gb|EFK39907.1| transcription termination factor Rho [Listeria monocytogenes FSL
N1-017]
Length = 170
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDRVS 100
>gi|315651449|ref|ZP_07904472.1| transcription termination factor [Eubacterium saburreum DSM 3986]
gi|315486269|gb|EFU76628.1| transcription termination factor [Eubacterium saburreum DSM 3986]
Length = 579
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GFI E +DV++ + + GL G +V+
Sbjct: 216 GFGFIRCENFLPGDNDVYVAPTQIKKFGLRT---GDVVS 251
>gi|159899894|ref|YP_001546141.1| transcription termination factor Rho [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892933|gb|ABX06013.1| transcription termination factor Rho [Herpetosiphon aurantiacus
ATCC 23779]
Length = 416
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ + DDV++ ++ + GL G ++
Sbjct: 62 GFGFLRSDRMLPGPDDVYVSQTQIRRFGLRT---GDRIS 97
>gi|119477191|ref|ZP_01617427.1| hypothetical protein GP2143_02674 [marine gamma proteobacterium
HTCC2143]
gi|119449554|gb|EAW30792.1| hypothetical protein GP2143_02674 [marine gamma proteobacterium
HTCC2143]
Length = 84
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ ++K + DK GF+ G D+ + ++ + + L G V ++ +
Sbjct: 1 MQT-TVKKWFQDKESGFL----DNGGGADIMVRKTDLLNCQF--LKVGATVEFECHSDKR 53
Query: 62 NGKYSAENLKL 72
A+ +KL
Sbjct: 54 G--LVAKKVKL 62
>gi|255030537|ref|ZP_05302488.1| hypothetical protein LmonL_18126 [Listeria monocytogenes LO28]
Length = 40
Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 2 VHRGSIKWYNPDK 14
+ +G++KW+N +K
Sbjct: 1 MEQGTVKWFNAEK 13
>gi|323340564|ref|ZP_08080819.1| transcription termination factor Rho [Lactobacillus ruminis ATCC
25644]
gi|323092108|gb|EFZ34725.1| transcription termination factor Rho [Lactobacillus ruminis ATCC
25644]
Length = 439
Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G ++ + D GYGF+ P + S +D++L S + GL N G V
Sbjct: 56 KGILEIFYDDGGYGFLRPLNYSPSKEDIYLSASQIKRFGLRN---GDEVAGRVRPPRKG 111
>gi|89900761|ref|YP_523232.1| ribonuclease R [Rhodoferax ferrireducens T118]
gi|89345498|gb|ABD69701.1| RNAse R [Rhodoferax ferrireducens T118]
Length = 746
Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+T + D++L + + + V V++D G+ L+++
Sbjct: 15 GHGFVTRDD---GQPDIYLPPNEMRAVLHK-----DRVKVRIVRSDRKGRPEGRVLEIIE 66
Query: 75 KSS 77
++S
Sbjct: 67 RTS 69
>gi|332530844|ref|ZP_08406770.1| ribonuclease R [Hylemonella gracilis ATCC 19624]
gi|332039756|gb|EGI76156.1| ribonuclease R [Hylemonella gracilis ATCC 19624]
Length = 801
Score = 36.2 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ + D++L S + + V V++D G+ ++++
Sbjct: 32 GHGFVVRDD---GDADIYLSPSEMRAVLHK-----DRVKARVVRHDRKGRPEGRVVEIIE 83
Query: 75 KSS 77
+S+
Sbjct: 84 RST 86
>gi|86157882|ref|YP_464667.1| DNA-binding cold-shock protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774393|gb|ABC81230.1| cold-shock DNA-binding protein family [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 194
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
G + +G+GF+ TP+ +++ +V G L G V + V+
Sbjct: 118 PHGVVARIFHGEGFGFLRTPDD-----REIYFDARSVLRGGFDRLEIGSPVRF--VEEPG 170
Query: 62 NGKYSAENL 70
A +
Sbjct: 171 EEGPQASTV 179
>gi|327438855|dbj|BAK15220.1| exoribonuclease R [Solibacillus silvestris StLB046]
Length = 802
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
KG+GF+ PE + DD+F+ V A L E V ++ + + +K
Sbjct: 80 NAKGFGFVAPE--EQGMDDIFIPAHEVNGA----LNE-DTVLVRVLKEQSGDRREGTVVK 132
Query: 72 LVPKS 76
+V +S
Sbjct: 133 IVERS 137
>gi|298368638|ref|ZP_06979956.1| cold shock domain protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282641|gb|EFI24128.1| cold shock domain protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 231
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G+I +N + +G I S +VF +A T G+ V+++
Sbjct: 1 MRHYGTIAHWNEARKFGAI---LEEYSQKEVFAPLAAFDRTD-PPPTVGERVSFEMTVGR 56
Query: 61 ANGKYSA 67
N +A
Sbjct: 57 RNRDEAA 63
>gi|187926454|ref|YP_001892799.1| putative cold-shock DNA-binding domain protein [Ralstonia
pickettii 12J]
gi|241665941|ref|YP_002984300.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
gi|309778742|ref|ZP_07673515.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
gi|187728208|gb|ACD29372.1| putative cold-shock DNA-binding domain protein [Ralstonia
pickettii 12J]
gi|240867968|gb|ACS65628.1| putative cold-shock DNA-binding domain protein [Ralstonia
pickettii 12D]
gi|308922450|gb|EFP68074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
Length = 68
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
S + + EGQ V++D + +G+ A N+K +
Sbjct: 32 SEIQFSRSQTFHEGQRVSFDV-EIGPDGELIAVNIKPI 68
>gi|77165898|ref|YP_344423.1| sigma 54 modulation protein/ribosomal protein S30EA [Nitrosococcus
oceani ATCC 19707]
gi|254434884|ref|ZP_05048392.1| ribosomal subunit interface protein [Nitrosococcus oceani AFC27]
gi|76884212|gb|ABA58893.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrosococcus
oceani ATCC 19707]
gi|207091217|gb|EDZ68488.1| ribosomal subunit interface protein [Nitrosococcus oceani AFC27]
Length = 182
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
T G +++ H++++ + G L G V + + D + S ++K
Sbjct: 134 ETIDGREIYFHKNSILNGGFKELKVGNEVHFIEEEGDLGPQASTVHIK 181
>gi|85710720|ref|ZP_01041784.1| hypothetical protein NAP1_09922 [Erythrobacter sp. NAP1]
gi|85687898|gb|EAQ27903.1| hypothetical protein NAP1_09922 [Erythrobacter sp. NAP1]
Length = 84
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M H G IK Y+ G G IT E + GD + ++ + G Q +Y+ + D
Sbjct: 1 MAHFGKIKSYDSSMGAGSITAE---KGGDVLRFKKADLQQEG-QVPKVDQRYSYEPKEVD 56
Query: 61 ANGKYSAENLK 71
GK SA NL+
Sbjct: 57 -GGKKSAVNLQ 66
>gi|238059964|ref|ZP_04604673.1| hypothetical protein MCAG_00930 [Micromonospora sp. ATCC 39149]
gi|237881775|gb|EEP70603.1| hypothetical protein MCAG_00930 [Micromonospora sp. ATCC 39149]
Length = 116
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG- 63
G ++ ++ D+G+G I ++H SA+A G +L GQ V + +G
Sbjct: 12 GVVREFHVDEGWGVI---DGPAVPGGCWVHFSAIAMGGFRHLAAGQFVWLRAEAVEQDGF 68
Query: 64 KYSAENL 70
+ A +
Sbjct: 69 SFRAVKV 75
>gi|254825314|ref|ZP_05230315.1| transcription termination factor Rho [Listeria monocytogenes FSL
J1-194]
gi|254828127|ref|ZP_05232814.1| transcription termination factor Rho [Listeria monocytogenes FSL
N3-165]
gi|254831026|ref|ZP_05235681.1| transcription termination factor Rho [Listeria monocytogenes
10403S]
gi|254853921|ref|ZP_05243269.1| transcription termination factor Rho [Listeria monocytogenes FSL
R2-503]
gi|255520817|ref|ZP_05388054.1| transcription termination factor Rho [Listeria monocytogenes FSL
J1-175]
gi|284802989|ref|YP_003414854.1| transcription termination factor Rho [Listeria monocytogenes
08-5578]
gi|284996130|ref|YP_003417898.1| transcription termination factor Rho [Listeria monocytogenes
08-5923]
gi|15054717|gb|AAK82680.1| transcription termination factor Rho [Listeria monocytogenes]
gi|258600512|gb|EEW13837.1| transcription termination factor Rho [Listeria monocytogenes FSL
N3-165]
gi|258607308|gb|EEW19916.1| transcription termination factor Rho [Listeria monocytogenes FSL
R2-503]
gi|284058551|gb|ADB69492.1| transcription termination factor Rho [Listeria monocytogenes
08-5578]
gi|284061597|gb|ADB72536.1| transcription termination factor Rho [Listeria monocytogenes
08-5923]
gi|293594560|gb|EFG02321.1| transcription termination factor Rho [Listeria monocytogenes FSL
J1-194]
Length = 423
Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDRVS 100
>gi|16804589|ref|NP_466074.1| transcription termination factor Rho [Listeria monocytogenes EGD-e]
gi|47097667|ref|ZP_00235183.1| transcription termination factor Rho [Listeria monocytogenes str.
1/2a F6854]
gi|224500705|ref|ZP_03669054.1| transcription termination factor Rho [Listeria monocytogenes
Finland 1988]
gi|224503209|ref|ZP_03671516.1| transcription termination factor Rho [Listeria monocytogenes FSL
R2-561]
gi|254900310|ref|ZP_05260234.1| transcription termination factor Rho [Listeria monocytogenes J0161]
gi|254913451|ref|ZP_05263463.1| rho [Listeria monocytogenes J2818]
gi|254937832|ref|ZP_05269529.1| transcription termination factor Rho [Listeria monocytogenes F6900]
gi|255025427|ref|ZP_05297413.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-003]
gi|16412039|emb|CAD00629.1| rho [Listeria monocytogenes EGD-e]
gi|47013959|gb|EAL04976.1| transcription termination factor Rho [Listeria monocytogenes str.
1/2a F6854]
gi|258610436|gb|EEW23044.1| transcription termination factor Rho [Listeria monocytogenes F6900]
gi|293591458|gb|EFF99792.1| rho [Listeria monocytogenes J2818]
Length = 423
Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDRVS 100
>gi|300311187|ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1]
gi|300073972|gb|ADJ63371.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1]
Length = 839
Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ P+ DD+FL + G V V D G+ +++V
Sbjct: 84 GFGFLLPDD---GSDDLFLPEKEMQKVMH-----GDRVQARIVGTDRRGRPEGTIVEVVE 135
Query: 75 KS 76
++
Sbjct: 136 RA 137
>gi|237731954|ref|ZP_04562435.1| predicted protein [Citrobacter sp. 30_2]
gi|226907493|gb|EEH93411.1| predicted protein [Citrobacter sp. 30_2]
Length = 594
Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 5 GSIKWY-------NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
G++ W+ + + +GF+ E G+++F H++ ++ + + V +
Sbjct: 14 GNVLWFGGYNSKTDRENNFGFLLSEN----GNELFFHKNEISRN--YTPADNTPVLFREG 67
Query: 58 QNDANGKYSAENLKLVPKSSN 78
NGK +A N+ ++ K+
Sbjct: 68 IG-KNGKPTAFNVHILDKTDE 87
>gi|299821835|ref|ZP_07053723.1| transcription termination factor Rho [Listeria grayi DSM 20601]
gi|299817500|gb|EFI84736.1| transcription termination factor Rho [Listeria grayi DSM 20601]
Length = 431
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
P +G+GF+ P + S +D+++ S + L G V+
Sbjct: 70 PSEGFGFLRPINYSSSSEDIYISASQIRRFDLRT---GDKVS 108
>gi|255021111|ref|ZP_05293164.1| Ribonuclease R [Acidithiobacillus caldus ATCC 51756]
gi|254969525|gb|EET27034.1| Ribonuclease R [Acidithiobacillus caldus ATCC 51756]
Length = 742
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ P+ D+F ++ + + G +V V D G+ ++++
Sbjct: 104 GFGFLVPDN---GDKDLF-----LSPREMRKVFHGDVVLGRIVGEDRRGRLEGAVVRILE 155
Query: 75 KS 76
++
Sbjct: 156 RA 157
>gi|254787275|ref|YP_003074704.1| hypothetical protein TERTU_3357 [Teredinibacter turnerae T7901]
gi|237685617|gb|ACR12881.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
Length = 258
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAG-------LFNLTEGQ 50
+ HRG + + N +KG+GF++ + D +F H S + G L
Sbjct: 175 IRHRGVLDYVNEEKGFGFLSIRTGYQLTDIESGIFCHISQLTEDGMGVSNDRFSALASNN 234
Query: 51 LV-TYDYVQNDANGKYSAEN 69
V +D ++++ G + AEN
Sbjct: 235 AVIEFDKIKSERGG-FQAEN 253
>gi|54022456|ref|YP_116698.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54013964|dbj|BAD55334.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length = 71
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ R ++ +N G G +T + + H S V +F L+EG V +
Sbjct: 1 MERATVYRWNIRNGTGVLTRTDGSL----AWFHLSTVDKGDVFTLSEGDPVDAEIENVPQ 56
Query: 62 NGKY-SAENLK 71
G A +++
Sbjct: 57 GGYECRAVSVR 67
>gi|261420787|ref|YP_003254469.1| transcription termination factor Rho [Geobacillus sp. Y412MC61]
gi|297531582|ref|YP_003672857.1| transcription termination factor Rho [Geobacillus sp. C56-T3]
gi|319768457|ref|YP_004133958.1| transcription termination factor Rho [Geobacillus sp. Y412MC52]
gi|261377244|gb|ACX79987.1| transcription termination factor Rho [Geobacillus sp. Y412MC61]
gi|297254834|gb|ADI28280.1| transcription termination factor Rho [Geobacillus sp. C56-T3]
gi|317113323|gb|ADU95815.1| transcription termination factor Rho [Geobacillus sp. Y412MC52]
Length = 424
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
P +G+GF+ P + S +D+++ S + +L G V+
Sbjct: 61 PSEGFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|222056473|ref|YP_002538835.1| ribonuclease R [Geobacter sp. FRC-32]
gi|221565762|gb|ACM21734.1| ribonuclease R [Geobacter sp. FRC-32]
Length = 758
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGF+ PE G+DVF+ + G V V +GK +K +
Sbjct: 79 GYGFVMPE----EGEDVFIPARYLRENMH-----GDRVEVQIVAKKRDGKQEGRIVKTLE 129
Query: 75 KS 76
+
Sbjct: 130 RG 131
>gi|311033348|ref|ZP_07711438.1| transcription termination factor Rho [Bacillus sp. m3-13]
Length = 423
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|294501884|ref|YP_003565584.1| transcription termination factor Rho [Bacillus megaterium QM
B1551]
gi|51704740|gb|AAU09403.1| putative transcription termination factor Rho [Bacillus
megaterium]
gi|294351821|gb|ADE72150.1| transcription termination factor Rho [Bacillus megaterium QM
B1551]
Length = 424
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|323484420|ref|ZP_08089786.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum
WAL-14163]
gi|323402198|gb|EGA94530.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum
WAL-14163]
Length = 733
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
KG+GF+T EG DVF+ A G V + D + ++
Sbjct: 99 HSKGFGFVTVEGRE---KDVFIPGDRTGGAMH-----GDKVQIVIEEEDNGKRAEGCVVR 150
Query: 72 LVPKSSN 78
++ +++
Sbjct: 151 VLEHAND 157
>gi|332832116|ref|XP_003312178.1| PREDICTED: tight junction protein ZO-2 isoform 4 [Pan
troglodytes]
Length = 1108
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSEGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|295707232|ref|YP_003600307.1| transcription termination factor Rho [Bacillus megaterium DSM
319]
gi|294804891|gb|ADF41957.1| transcription termination factor Rho [Bacillus megaterium DSM
319]
Length = 424
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|113474604|ref|YP_720665.1| hypothetical protein Tery_0765 [Trichodesmium erythraeum IMS101]
gi|110165652|gb|ABG50192.1| Tetratricopeptide TPR_2 [Trichodesmium erythraeum IMS101]
Length = 1180
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 19 ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
I+P+ T D+F + + + + LTEG+LV + + NGK A+ + ++ + +
Sbjct: 1123 ISPDDGTL---DIFFNDKYMNTESISQLTEGELVEVEVKE--KNGKRYAKQISVIEEEED 1177
>gi|332236690|ref|XP_003267532.1| PREDICTED: tight junction protein ZO-2 [Nomascus leucogenys]
Length = 1164
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|300113400|ref|YP_003759975.1| ribosomal subunit interface protein [Nitrosococcus watsonii C-113]
gi|299539337|gb|ADJ27654.1| ribosomal subunit interface protein [Nitrosococcus watsonii C-113]
Length = 182
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
T G +++ HR+++ + G L G V + + D + S ++K
Sbjct: 134 ETIDGREIYFHRNSILNGGFKELKVGNEVHFIEEEGDLGPQASTVHIK 181
>gi|255028931|ref|ZP_05300882.1| transcription termination factor Rho [Listeria monocytogenes
LO28]
Length = 370
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 12 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDRVS 47
>gi|56421917|ref|YP_149235.1| transcription termination factor Rho [Geobacillus kaustophilus
HTA426]
gi|56381759|dbj|BAD77667.1| transcriptional terminator [Geobacillus kaustophilus HTA426]
Length = 424
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
P +G+GF+ P + S +D+++ S + +L G V+
Sbjct: 61 PSEGFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|332982435|ref|YP_004463876.1| RNAse R [Mahella australiensis 50-1 BON]
gi|332700113|gb|AEE97054.1| RNAse R [Mahella australiensis 50-1 BON]
Length = 706
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
KG+GFI P+ ++ DV++ + A G V + +D + + ++
Sbjct: 75 NAKGFGFIIPDDGSQ--KDVYVSADDINGA-----MNGDRVMAKILFSDGDRSREGQIVQ 127
Query: 72 LVPKS 76
++ ++
Sbjct: 128 ILERA 132
>gi|332832110|ref|XP_003312175.1| PREDICTED: tight junction protein ZO-2 isoform 1 [Pan troglodytes]
Length = 1221
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 70 DSKRGFG-IAVSEGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 128
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 129 HSFAVQQLRKSGKVAAIVVK 148
>gi|254992825|ref|ZP_05275015.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-064]
Length = 449
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDRVS 100
>gi|221045026|dbj|BAH14190.1| unnamed protein product [Homo sapiens]
Length = 1108
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTLMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|315304808|ref|ZP_07874967.1| transcription termination factor Rho [Listeria ivanovii FSL F6-596]
gi|313626823|gb|EFR95797.1| transcription termination factor Rho [Listeria ivanovii FSL F6-596]
Length = 423
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|330824717|ref|YP_004388020.1| ribonuclease R [Alicycliphilus denitrificans K601]
gi|329310089|gb|AEB84504.1| ribonuclease R [Alicycliphilus denitrificans K601]
Length = 763
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ + D+++ + + + V V+ D G+ +++V
Sbjct: 31 GHGFVVRDDGE---PDIYIPPNEMRAVLHK-----DRVRVRIVRQDRRGRPEGRVVEIVE 82
Query: 75 KSS 77
+
Sbjct: 83 RPP 85
>gi|319762627|ref|YP_004126564.1| ribonuclease r [Alicycliphilus denitrificans BC]
gi|317117188|gb|ADU99676.1| ribonuclease R [Alicycliphilus denitrificans BC]
Length = 763
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ + D+++ + + + V V+ D G+ +++V
Sbjct: 31 GHGFVVRDDGE---PDIYIPPNEMRAVLHK-----DRVRVRIVRQDRRGRPEGRVVEIVE 82
Query: 75 KSS 77
+
Sbjct: 83 RPP 85
>gi|229542472|ref|ZP_04431532.1| transcription termination factor Rho [Bacillus coagulans 36D1]
gi|229326892|gb|EEN92567.1| transcription termination factor Rho [Bacillus coagulans 36D1]
Length = 426
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|138896958|ref|YP_001127411.1| transcription termination factor Rho [Geobacillus
thermodenitrificans NG80-2]
gi|196249776|ref|ZP_03148472.1| transcription termination factor Rho [Geobacillus sp. G11MC16]
gi|134268471|gb|ABO68666.1| Rho Factor [Geobacillus thermodenitrificans NG80-2]
gi|196210652|gb|EDY05415.1| transcription termination factor Rho [Geobacillus sp. G11MC16]
Length = 424
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
P +G+GF+ P + S +D+++ S + +L G V+
Sbjct: 61 PSEGFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|332832108|ref|XP_520061.3| PREDICTED: tight junction protein ZO-2 isoform 5 [Pan
troglodytes]
Length = 1167
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSEGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|83648223|ref|YP_436658.1| ribonuclease R [Hahella chejuensis KCTC 2396]
gi|83636266|gb|ABC32233.1| ribonuclease R [Hahella chejuensis KCTC 2396]
Length = 804
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
G+GF+ + E GDD+ L++S + A +G V D G+ A+ + ++
Sbjct: 97 GHGFLARD---EGGDDLVLNKSQMRKA-----LDGDRVQVRISGVDHRGRQEAQIVSVLE 148
Query: 75 K 75
+
Sbjct: 149 R 149
>gi|148264740|ref|YP_001231446.1| ribonuclease R [Geobacter uraniireducens Rf4]
gi|146398240|gb|ABQ26873.1| RNAse R [Geobacter uraniireducens Rf4]
Length = 763
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGF+ PE +D+F+ + G V V +GK +K V
Sbjct: 79 GYGFVIPE---AGKEDIFIPARYLRENMH-----GDKVEVRIVAKKRDGKQEGRIVKTVE 130
Query: 75 KS 76
+
Sbjct: 131 RG 132
>gi|303285558|ref|XP_003062069.1| cold-shock protein [Micromonas pusilla CCMP1545]
gi|226456480|gb|EEH53781.1| cold-shock protein [Micromonas pusilla CCMP1545]
Length = 994
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-------NDANGKYSAE 68
+GF+ + G +F H S V S G+ L G V + + D K +A
Sbjct: 126 FGFVRR--HHKPGPQLFFHASEV-SEGIATLKPGDDVRFVLREAVPGAGARDRESKPNAT 182
Query: 69 NLKLV 73
++ V
Sbjct: 183 RVEKV 187
>gi|197301350|ref|ZP_03166431.1| hypothetical protein RUMLAC_00077 [Ruminococcus lactaris ATCC
29176]
gi|197299507|gb|EDY34026.1| hypothetical protein RUMLAC_00077 [Ruminococcus lactaris ATCC
29176]
Length = 449
Score = 35.8 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
GYGFI + DV++ S + GL
Sbjct: 90 GYGFIRSDNYLPGEQDVYVAPSQIRRFGLKT 120
>gi|212640543|ref|YP_002317063.1| transcription termination factor Rho [Anoxybacillus flavithermus
WK1]
gi|212562023|gb|ACJ35078.1| Transcriptional terminator Rho [Anoxybacillus flavithermus WK1]
Length = 428
Score = 35.4 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 67 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 102
>gi|116873917|ref|YP_850698.1| transcription termination factor Rho [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116742795|emb|CAK21919.1| transcription termination factor [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 423
Score = 35.4 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|315283722|ref|ZP_07871821.1| transcription termination factor Rho [Listeria marthii FSL S4-120]
gi|313612637|gb|EFR86680.1| transcription termination factor Rho [Listeria marthii FSL S4-120]
Length = 423
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|254932208|ref|ZP_05265567.1| transcription termination factor Rho [Listeria monocytogenes
HPB2262]
gi|9247160|gb|AAD09997.2| transcription termination factor Rho [Listeria monocytogenes]
gi|293583763|gb|EFF95795.1| transcription termination factor Rho [Listeria monocytogenes
HPB2262]
gi|328471065|gb|EGF41972.1| transcription termination factor Rho [Listeria monocytogenes 220]
gi|332312980|gb|EGJ26075.1| Transcription termination factor Rho [Listeria monocytogenes str.
Scott A]
Length = 423
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|323144338|ref|ZP_08078951.1| hypothetical protein HMPREF9444_01612 [Succinatimonas hippei YIT
12066]
gi|322415895|gb|EFY06616.1| hypothetical protein HMPREF9444_01612 [Succinatimonas hippei YIT
12066]
Length = 208
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA-NG 63
G+I ++ D+GYGFI G + + + + + E V + +
Sbjct: 3 GNIVFFLKDEGYGFIL-------GKNKIRYYFNIHNIYYSSPKENDEVLFTPKPRTSLKL 55
Query: 64 KYSAENLKLVPKS 76
+AEN+ LV S
Sbjct: 56 SPTAENIHLVKPS 68
>gi|309789697|ref|ZP_07684277.1| transcription termination factor Rho [Oscillochloris trichoides
DG6]
gi|308228183|gb|EFO81831.1| transcription termination factor Rho [Oscillochloris trichoides
DG6]
Length = 417
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
G+GF+ + DDV++ +S + GL G +
Sbjct: 61 GFGFLRGDRMLPGSDDVYVSQSQIRRFGLRT---GDRI 95
>gi|297684548|ref|XP_002819892.1| PREDICTED: tight junction protein ZO-2-like isoform 2 [Pongo
abelii]
Length = 1217
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 70 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 128
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 129 HSFAVQQLRKSGKVAAIVVK 148
>gi|291520556|emb|CBK75777.1| transcription termination factor Rho [Butyrivibrio fibrisolvens
16/4]
Length = 494
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
G+GFI + DDV++ +S + L
Sbjct: 134 GFGFIRCDNYMPGTDDVYVSQSQIKKFNLKT 164
>gi|282165810|ref|NP_001163887.1| tight junction protein ZO-2 isoform 3 [Homo sapiens]
Length = 1221
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 70 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 128
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 129 HSFAVQQLRKSGKVAAIVVK 148
>gi|221040554|dbj|BAH11954.1| unnamed protein product [Homo sapiens]
Length = 1221
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 70 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 128
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 129 HSFAVQQLRKSGKVAAIVVK 148
>gi|217963346|ref|YP_002349024.1| transcription termination factor Rho [Listeria monocytogenes HCC23]
gi|290892713|ref|ZP_06555705.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-071]
gi|217332616|gb|ACK38410.1| transcription termination factor Rho [Listeria monocytogenes HCC23]
gi|290557773|gb|EFD91295.1| transcription termination factor Rho [Listeria monocytogenes FSL
J2-071]
gi|307572077|emb|CAR85256.1| rho [Listeria monocytogenes L99]
gi|313606709|gb|EFR83438.1| transcription termination factor Rho [Listeria monocytogenes FSL
F2-208]
Length = 423
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|145629456|ref|ZP_01785254.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
gi|144978299|gb|EDJ88063.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
Length = 37
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDAN 62
G +L GQ V ++ + +D
Sbjct: 1 MDGYRSLKAGQKVQFEVLHSDKG 23
>gi|46908722|ref|YP_015111.1| transcription termination factor Rho [Listeria monocytogenes
serotype 4b str. F2365]
gi|226225098|ref|YP_002759205.1| transcription terminator factor rho [Listeria monocytogenes
Clip81459]
gi|46881994|gb|AAT05288.1| transcription termination factor Rho [Listeria monocytogenes
serotype 4b str. F2365]
gi|225877560|emb|CAS06274.1| Putative transcription terminator factor rho [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|328465153|gb|EGF36421.1| transcription termination factor Rho [Listeria monocytogenes 1816]
Length = 423
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|332832112|ref|XP_003312176.1| PREDICTED: tight junction protein ZO-2 isoform 2 [Pan
troglodytes]
Length = 1020
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSEGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|313622337|gb|EFR92824.1| transcription termination factor Rho [Listeria innocua FSL J1-023]
Length = 423
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|296189797|ref|XP_002742923.1| PREDICTED: tight junction protein ZO-2 isoform 4 [Callithrix
jacchus]
Length = 1045
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|296189793|ref|XP_002742921.1| PREDICTED: tight junction protein ZO-2 isoform 2 [Callithrix
jacchus]
Length = 1222
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 69 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 127
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 128 HSFAVQQLRKSGKVAAIVVK 147
>gi|257422914|ref|ZP_05599904.1| transcription termination factor Rho [Enterococcus faecalis X98]
gi|257164738|gb|EEU94698.1| transcription termination factor Rho [Enterococcus faecalis X98]
Length = 333
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|168278399|dbj|BAG11079.1| tight junction protein ZO-2 [synthetic construct]
Length = 1190
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|154482493|ref|ZP_02024941.1| hypothetical protein EUBVEN_00160 [Eubacterium ventriosum ATCC
27560]
gi|149736694|gb|EDM52580.1| hypothetical protein EUBVEN_00160 [Eubacterium ventriosum ATCC
27560]
Length = 541
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
G+GFI + DDV++ S + L G VT + K+ A
Sbjct: 179 GFGFIRCDNYLPGDDDVYVAPSQIKRFHLKT---GDFVTGQVREKRETEKFGA 228
>gi|5924409|gb|AAC02527.2| tight junction protein ZO-2 isoform C [Homo sapiens]
Length = 1167
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|16801757|ref|NP_472025.1| transcription termination factor Rho [Listeria innocua Clip11262]
gi|16415232|emb|CAC97922.1| rho [Listeria innocua Clip11262]
Length = 423
Score = 35.4 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASQIRRFELRT---GDKVS 100
>gi|332686690|ref|YP_004456464.1| transcription termination factor Rho [Melissococcus plutonius ATCC
35311]
gi|332370699|dbj|BAK21655.1| transcription termination factor Rho [Melissococcus plutonius ATCC
35311]
Length = 430
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|295400665|ref|ZP_06810642.1| transcription termination factor Rho [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112645|ref|YP_003990961.1| transcription termination factor Rho [Geobacillus sp. Y4.1MC1]
gi|294977246|gb|EFG52847.1| transcription termination factor Rho [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217746|gb|ADP76350.1| transcription termination factor Rho [Geobacillus sp. Y4.1MC1]
Length = 424
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|154687823|ref|YP_001422984.1| transcription termination factor Rho [Bacillus amyloliquefaciens
FZB42]
gi|308175436|ref|YP_003922141.1| transcription termination factor Rho [Bacillus amyloliquefaciens
DSM 7]
gi|154353674|gb|ABS75753.1| Rho [Bacillus amyloliquefaciens FZB42]
gi|307608300|emb|CBI44671.1| transcription termination factor Rho [Bacillus amyloliquefaciens
DSM 7]
gi|328555416|gb|AEB25908.1| transcription termination factor Rho [Bacillus amyloliquefaciens
TA208]
gi|328913786|gb|AEB65382.1| transcription termination factor Rho [Bacillus amyloliquefaciens
LL3]
Length = 428
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|311070227|ref|YP_003975150.1| transcription termination factor Rho [Bacillus atrophaeus 1942]
gi|310870744|gb|ADP34219.1| transcription termination factor Rho [Bacillus atrophaeus 1942]
Length = 427
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|301299473|ref|ZP_07205747.1| transcription termination factor Rho [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852907|gb|EFK80517.1| transcription termination factor Rho [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 427
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 73 GYGFLRPINYGPSQEDIYISASQIRRFGLRN---GDEV 107
>gi|282891364|ref|ZP_06299866.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498861|gb|EFB41178.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 764
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-----YVQNDANGKYSAE 68
+G+GF+ P+ + D+F+ R +A +G V + GK A
Sbjct: 106 RGFGFVQPDDPSVCDQDIFIPRPHTQNA-----VDGDKVEVVIDTLAISEKGPEGKVIAI 160
Query: 69 N 69
Sbjct: 161 V 161
>gi|42518070|ref|NP_004808.2| tight junction protein ZO-2 isoform 1 [Homo sapiens]
gi|317373313|sp|Q9UDY2|ZO2_HUMAN RecName: Full=Tight junction protein ZO-2; AltName: Full=Tight
junction protein 2; AltName: Full=Zona occludens protein
2; AltName: Full=Zonula occludens protein 2
gi|20379538|gb|AAH27592.1| Tight junction protein 2 (zona occludens 2) [Homo sapiens]
gi|55664532|emb|CAH70868.1| tight junction protein 2 (zona occludens 2) [Homo sapiens]
gi|117644192|emb|CAL37590.1| hypothetical protein [synthetic construct]
gi|117644374|emb|CAL37681.1| hypothetical protein [synthetic construct]
gi|117644758|emb|CAL37845.1| hypothetical protein [synthetic construct]
gi|117646904|emb|CAL37567.1| hypothetical protein [synthetic construct]
Length = 1190
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|332832114|ref|XP_003312177.1| PREDICTED: tight junction protein ZO-2 isoform 3 [Pan troglodytes]
Length = 1157
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 43 DSKRGFG-IAVSEGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 101
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 102 HSFAVQQLRKSGKVAAIVVK 121
>gi|297684546|ref|XP_002819891.1| PREDICTED: tight junction protein ZO-2-like isoform 1 [Pongo
abelii]
Length = 1186
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|296189791|ref|XP_002742920.1| PREDICTED: tight junction protein ZO-2 isoform 1 [Callithrix
jacchus]
Length = 1192
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|5924408|gb|AAD20387.2| tight junction protein ZO-2 isoform A [Homo sapiens]
gi|119582880|gb|EAW62476.1| tight junction protein 2 (zona occludens 2), isoform CRA_a [Homo
sapiens]
gi|119582882|gb|EAW62478.1| tight junction protein 2 (zona occludens 2), isoform CRA_a [Homo
sapiens]
Length = 1190
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|227891801|ref|ZP_04009606.1| transcription termination factor Rho [Lactobacillus salivarius ATCC
11741]
gi|227866366|gb|EEJ73787.1| transcription termination factor Rho [Lactobacillus salivarius ATCC
11741]
gi|300214201|gb|ADJ78617.1| Transcription termination factor [Lactobacillus salivarius CECT
5713]
Length = 427
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 73 GYGFLRPINYGPSQEDIYISASQIRRFGLRN---GDEV 107
>gi|90961326|ref|YP_535242.1| transcription termination factor Rho [Lactobacillus salivarius
UCC118]
gi|90820520|gb|ABD99159.1| Transcription termination factor [Lactobacillus salivarius UCC118]
Length = 427
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 73 GYGFLRPINYGPSQEDIYISASQIRRFGLRN---GDEV 107
>gi|282165800|ref|NP_001163885.1| tight junction protein ZO-2 isoform 5 [Homo sapiens]
Length = 1020
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|329914598|ref|ZP_08276135.1| 3'-to-5' exoribonuclease RNase R [Oxalobacteraceae bacterium
IMCC9480]
gi|327545098|gb|EGF30392.1| 3'-to-5' exoribonuclease RNase R [Oxalobacteraceae bacterium
IMCC9480]
Length = 180
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
G + + +G+GF+ P+ GDD+FL + L G V + D G+
Sbjct: 74 GRVS--SHREGFGFLVPDD---GGDDLFLSEKEMQ----KVLH-GDRVKARIIGTDRRGR 123
Query: 65 YSAENLKLVPKS 76
+++V ++
Sbjct: 124 PEGTIVEVVSRA 135
>gi|5924411|gb|AAD56219.2| tight junction protein ZO-2 isoform C [Homo sapiens]
gi|221040544|dbj|BAH11949.1| unnamed protein product [Homo sapiens]
Length = 1020
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 16 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 74
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 75 HSFAVQQLRKSGKVAAIVVK 94
>gi|239828611|ref|YP_002951235.1| transcription termination factor Rho [Geobacillus sp. WCH70]
gi|239808904|gb|ACS25969.1| transcription termination factor Rho [Geobacillus sp. WCH70]
Length = 424
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|311244236|ref|XP_003121370.1| PREDICTED: protein lin-28 homolog B-like [Sus scrofa]
Length = 228
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
+ S + G +L EG+ V + + ++ E++++ +
Sbjct: 41 WRSGSKLFMEGFRSLKEGEPVEFTFKKSSKGL----ESIRVTGPGGS 83
>gi|319650901|ref|ZP_08005037.1| transcription termination factor Rho [Bacillus sp. 2_A_57_CT2]
gi|317397394|gb|EFV78096.1| transcription termination factor Rho [Bacillus sp. 2_A_57_CT2]
Length = 421
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|221044090|dbj|BAH13722.1| unnamed protein product [Homo sapiens]
Length = 1157
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 43 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 101
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 102 HSFAVQQLRKSGKVAAIVVK 121
>gi|42518065|ref|NP_963923.1| tight junction protein ZO-2 isoform 2 [Homo sapiens]
gi|122889286|emb|CAM13389.1| tight junction protein 2 (zona occludens 2) [Homo sapiens]
Length = 1043
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|853769|emb|CAA89877.1| transcriptional terminator Rho [Bacillus subtilis subsp. subtilis
str. 168]
Length = 427
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|297684552|ref|XP_002819894.1| PREDICTED: tight junction protein ZO-2-like isoform 4 [Pongo
abelii]
Length = 1039
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|297684550|ref|XP_002819893.1| PREDICTED: tight junction protein ZO-2-like isoform 3 [Pongo
abelii]
Length = 1153
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 43 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 101
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 102 HSFAVQQLRKSGKVAAIVVK 121
>gi|289435818|ref|YP_003465690.1| hypothetical protein lse_2457 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172062|emb|CBH28608.1| rho [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 423
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSTEDIYISASQIRRFELRT---GDKVS 100
>gi|282165804|ref|NP_001163886.1| tight junction protein ZO-2 isoform 4 [Homo sapiens]
Length = 1157
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 43 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 101
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 102 HSFAVQQLRKSGKVAAIVVK 121
>gi|5924410|gb|AAD56218.2| tight junction protein ZO-2 isoform A [Homo sapiens]
gi|119582883|gb|EAW62479.1| tight junction protein 2 (zona occludens 2), isoform CRA_c [Homo
sapiens]
gi|119582884|gb|EAW62480.1| tight junction protein 2 (zona occludens 2), isoform CRA_c [Homo
sapiens]
Length = 1043
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|323455118|gb|EGB10987.1| expressed protein [Aureococcus anophagefferens]
Length = 364
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 7 IKWYNPDKG-YGFITPEGSTESGD-----DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ +N G YGF+ P+ ST + D+FLH S +A +N G V++ +D
Sbjct: 241 VTRFN---GWYGFVRPDESTLRDEGFCRGDLFLHPSDAPAA--YNPQVGDRVSFHLGVHD 295
Query: 61 ANGKYSAENLKLVPKSSN 78
+ A +L+ V S+
Sbjct: 296 R--RLKAADLRPVSDDSD 311
>gi|296189795|ref|XP_002742922.1| PREDICTED: tight junction protein ZO-2 isoform 3 [Callithrix
jacchus]
Length = 1159
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 43 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 101
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 102 HSFAVQQLRKSGKVAAIVVK 121
>gi|256618754|ref|ZP_05475600.1| transcription termination factor Rho [Enterococcus faecalis ATCC
4200]
gi|256598281|gb|EEU17457.1| transcription termination factor Rho [Enterococcus faecalis ATCC
4200]
Length = 430
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|315174606|gb|EFU18623.1| transcription termination factor Rho [Enterococcus faecalis TX1346]
Length = 430
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|315148352|gb|EFT92368.1| transcription termination factor Rho [Enterococcus faecalis TX4244]
Length = 430
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|221311669|ref|ZP_03593516.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315997|ref|ZP_03597802.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320908|ref|ZP_03602202.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325192|ref|ZP_03606486.1| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767787|ref|NP_391589.2| transcription termination factor Rho [Bacillus subtilis subsp.
subtilis str. 168]
gi|296331347|ref|ZP_06873819.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676333|ref|YP_003868005.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii str. W23]
gi|321313258|ref|YP_004205545.1| transcription termination factor Rho [Bacillus subtilis BSn5]
gi|254763405|sp|Q03222|RHO_BACSU RecName: Full=Transcription termination factor Rho; AltName:
Full=ATP-dependent helicase Rho
gi|143434|gb|AAA02900.1| Rho Factor [Bacillus subtilis]
gi|225185415|emb|CAB15725.2| transcriptional terminator Rho [Bacillus subtilis subsp. subtilis
str. 168]
gi|291486292|dbj|BAI87367.1| transcription termination factor Rho [Bacillus subtilis subsp.
natto BEST195]
gi|296151462|gb|EFG92339.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414577|gb|ADM39696.1| transcription termination factor Rho [Bacillus subtilis subsp.
spizizenii str. W23]
gi|320019532|gb|ADV94518.1| transcription termination factor Rho [Bacillus subtilis BSn5]
Length = 427
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|29840007|ref|NP_829113.1| VacB/Rnb family exoribonuclease [Chlamydophila caviae GPIC]
gi|29834354|gb|AAP04991.1| exoribonuclease, VacB/Rnb family [Chlamydophila caviae GPIC]
Length = 678
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY----VQNDANGKY 65
KG+GF+TP+ E D+F+ + A +G V + +
Sbjct: 30 AKKGFGFVTPDHPEEYPFDIFIPARDLKGA-----LDGDHVIVSLFPNSKEGEKRKGM 82
>gi|313636259|gb|EFS02077.1| transcription termination factor Rho [Listeria seeligeri FSL
S4-171]
Length = 423
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSTEDIYISASQIRRFELRT---GDKVS 100
>gi|301787885|ref|XP_002929362.1| PREDICTED: LOW QUALITY PROTEIN: B box-binding protein-like,
partial [Ailuropoda melanoleuca]
Length = 283
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
+ G++K + GY FI +T DVF+ ++AV L
Sbjct: 42 MVLGTVKRFPVRNGYXFINRNDTT----DVFVAQTAVKKNPRQCL 82
>gi|29375746|ref|NP_814900.1| transcription termination factor Rho [Enterococcus faecalis V583]
gi|227518425|ref|ZP_03948474.1| transcription termination factor Rho [Enterococcus faecalis TX0104]
gi|227552955|ref|ZP_03983004.1| transcription termination factor Rho [Enterococcus faecalis HH22]
gi|229546151|ref|ZP_04434876.1| transcription termination factor Rho [Enterococcus faecalis TX1322]
gi|229550336|ref|ZP_04439061.1| transcription termination factor Rho [Enterococcus faecalis ATCC
29200]
gi|255973108|ref|ZP_05423694.1| transcription termination factor Rho [Enterococcus faecalis T1]
gi|255976151|ref|ZP_05426737.1| transcription termination factor Rho [Enterococcus faecalis T2]
gi|256762178|ref|ZP_05502758.1| transcription termination factor Rho [Enterococcus faecalis T3]
gi|256852819|ref|ZP_05558189.1| transcription termination factor Rho [Enterococcus faecalis T8]
gi|256958667|ref|ZP_05562838.1| transcription termination factor Rho [Enterococcus faecalis DS5]
gi|256962235|ref|ZP_05566406.1| transcription termination factor Rho [Enterococcus faecalis Merz96]
gi|256965429|ref|ZP_05569600.1| transcription termination factor Rho [Enterococcus faecalis
HIP11704]
gi|257077979|ref|ZP_05572340.1| transcription termination factor Rho [Enterococcus faecalis JH1]
gi|257082868|ref|ZP_05577229.1| transcription termination factor Rho [Enterococcus faecalis E1Sol]
gi|257085570|ref|ZP_05579931.1| transcription termination factor Rho [Enterococcus faecalis Fly1]
gi|257086524|ref|ZP_05580885.1| transcription termination factor Rho [Enterococcus faecalis D6]
gi|257089581|ref|ZP_05583942.1| transcriptional termination factor rho [Enterococcus faecalis
CH188]
gi|257415788|ref|ZP_05592782.1| transcription termination factor Rho [Enterococcus faecalis
AR01/DG]
gi|257418997|ref|ZP_05595991.1| transcription termination factor Rho [Enterococcus faecalis T11]
gi|293383264|ref|ZP_06629180.1| transcription termination factor Rho [Enterococcus faecalis R712]
gi|293387580|ref|ZP_06632127.1| transcription termination factor Rho [Enterococcus faecalis S613]
gi|294781090|ref|ZP_06746440.1| transcription termination factor Rho [Enterococcus faecalis PC1.1]
gi|300859915|ref|ZP_07106003.1| transcription termination factor Rho [Enterococcus faecalis TUSoD
Ef11]
gi|307268716|ref|ZP_07550085.1| transcription termination factor Rho [Enterococcus faecalis TX4248]
gi|307273862|ref|ZP_07555083.1| transcription termination factor Rho [Enterococcus faecalis TX0855]
gi|307275171|ref|ZP_07556321.1| transcription termination factor Rho [Enterococcus faecalis TX2134]
gi|307278796|ref|ZP_07559859.1| transcription termination factor Rho [Enterococcus faecalis TX0860]
gi|307288525|ref|ZP_07568510.1| transcription termination factor Rho [Enterococcus faecalis TX0109]
gi|307291153|ref|ZP_07571038.1| transcription termination factor Rho [Enterococcus faecalis TX0411]
gi|312899645|ref|ZP_07758970.1| transcription termination factor Rho [Enterococcus faecalis TX0470]
gi|312902288|ref|ZP_07761496.1| transcription termination factor Rho [Enterococcus faecalis TX0635]
gi|312906782|ref|ZP_07765781.1| transcription termination factor Rho [Enterococcus faecalis DAPTO
512]
gi|312909767|ref|ZP_07768615.1| transcription termination factor Rho [Enterococcus faecalis DAPTO
516]
gi|312952442|ref|ZP_07771311.1| transcription termination factor Rho [Enterococcus faecalis TX0102]
gi|29343207|gb|AAO80970.1| transcription termination factor Rho [Enterococcus faecalis V583]
gi|227074103|gb|EEI12066.1| transcription termination factor Rho [Enterococcus faecalis TX0104]
gi|227177925|gb|EEI58897.1| transcription termination factor Rho [Enterococcus faecalis HH22]
gi|229304599|gb|EEN70595.1| transcription termination factor Rho [Enterococcus faecalis ATCC
29200]
gi|229308675|gb|EEN74662.1| transcription termination factor Rho [Enterococcus faecalis TX1322]
gi|255964126|gb|EET96602.1| transcription termination factor Rho [Enterococcus faecalis T1]
gi|255969023|gb|EET99645.1| transcription termination factor Rho [Enterococcus faecalis T2]
gi|256683429|gb|EEU23124.1| transcription termination factor Rho [Enterococcus faecalis T3]
gi|256711278|gb|EEU26316.1| transcription termination factor Rho [Enterococcus faecalis T8]
gi|256949163|gb|EEU65795.1| transcription termination factor Rho [Enterococcus faecalis DS5]
gi|256952731|gb|EEU69363.1| transcription termination factor Rho [Enterococcus faecalis Merz96]
gi|256955925|gb|EEU72557.1| transcription termination factor Rho [Enterococcus faecalis
HIP11704]
gi|256986009|gb|EEU73311.1| transcription termination factor Rho [Enterococcus faecalis JH1]
gi|256990898|gb|EEU78200.1| transcription termination factor Rho [Enterococcus faecalis E1Sol]
gi|256993600|gb|EEU80902.1| transcription termination factor Rho [Enterococcus faecalis Fly1]
gi|256994554|gb|EEU81856.1| transcription termination factor Rho [Enterococcus faecalis D6]
gi|256998393|gb|EEU84913.1| transcriptional termination factor rho [Enterococcus faecalis
CH188]
gi|257157616|gb|EEU87576.1| transcription termination factor Rho [Enterococcus faecalis
ARO1/DG]
gi|257160825|gb|EEU90785.1| transcription termination factor Rho [Enterococcus faecalis T11]
gi|291079442|gb|EFE16806.1| transcription termination factor Rho [Enterococcus faecalis R712]
gi|291083001|gb|EFE19964.1| transcription termination factor Rho [Enterococcus faecalis S613]
gi|294451768|gb|EFG20220.1| transcription termination factor Rho [Enterococcus faecalis PC1.1]
gi|300850733|gb|EFK78482.1| transcription termination factor Rho [Enterococcus faecalis TUSoD
Ef11]
gi|306497807|gb|EFM67339.1| transcription termination factor Rho [Enterococcus faecalis TX0411]
gi|306500509|gb|EFM69841.1| transcription termination factor Rho [Enterococcus faecalis TX0109]
gi|306504467|gb|EFM73674.1| transcription termination factor Rho [Enterococcus faecalis TX0860]
gi|306508161|gb|EFM77281.1| transcription termination factor Rho [Enterococcus faecalis TX2134]
gi|306509464|gb|EFM78513.1| transcription termination factor Rho [Enterococcus faecalis TX0855]
gi|306515028|gb|EFM83574.1| transcription termination factor Rho [Enterococcus faecalis TX4248]
gi|310627212|gb|EFQ10495.1| transcription termination factor Rho [Enterococcus faecalis DAPTO
512]
gi|310629601|gb|EFQ12884.1| transcription termination factor Rho [Enterococcus faecalis TX0102]
gi|310634347|gb|EFQ17630.1| transcription termination factor Rho [Enterococcus faecalis TX0635]
gi|311289725|gb|EFQ68281.1| transcription termination factor Rho [Enterococcus faecalis DAPTO
516]
gi|311293219|gb|EFQ71775.1| transcription termination factor Rho [Enterococcus faecalis TX0470]
gi|315027633|gb|EFT39565.1| transcription termination factor Rho [Enterococcus faecalis TX2137]
gi|315029185|gb|EFT41117.1| transcription termination factor Rho [Enterococcus faecalis TX4000]
gi|315031502|gb|EFT43434.1| transcription termination factor Rho [Enterococcus faecalis TX0017]
gi|315035001|gb|EFT46933.1| transcription termination factor Rho [Enterococcus faecalis TX0027]
gi|315144573|gb|EFT88589.1| transcription termination factor Rho [Enterococcus faecalis TX2141]
gi|315151017|gb|EFT95033.1| transcription termination factor Rho [Enterococcus faecalis TX0012]
gi|315154101|gb|EFT98117.1| transcription termination factor Rho [Enterococcus faecalis TX0031]
gi|315158452|gb|EFU02469.1| transcription termination factor Rho [Enterococcus faecalis TX0312]
gi|315160997|gb|EFU05014.1| transcription termination factor Rho [Enterococcus faecalis TX0645]
gi|315165504|gb|EFU09521.1| transcription termination factor Rho [Enterococcus faecalis TX1302]
gi|315168329|gb|EFU12346.1| transcription termination factor Rho [Enterococcus faecalis TX1341]
gi|315170910|gb|EFU14927.1| transcription termination factor Rho [Enterococcus faecalis TX1342]
gi|315573653|gb|EFU85844.1| transcription termination factor Rho [Enterococcus faecalis
TX0309B]
gi|315577450|gb|EFU89641.1| transcription termination factor Rho [Enterococcus faecalis TX0630]
gi|315582732|gb|EFU94923.1| transcription termination factor Rho [Enterococcus faecalis
TX0309A]
gi|323480408|gb|ADX79847.1| transcription termination factor Rho [Enterococcus faecalis 62]
gi|327534800|gb|AEA93634.1| transcription termination factor Rho [Enterococcus faecalis OG1RF]
gi|329576562|gb|EGG58069.1| transcription termination factor Rho [Enterococcus faecalis TX1467]
Length = 430
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|62184878|ref|YP_219663.1| putative ribonuclease [Chlamydophila abortus S26/3]
gi|62147945|emb|CAH63692.1| putative ribonuclease [Chlamydophila abortus S26/3]
Length = 682
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY------VQNDANGKY 65
KG+GF+TP+ E D+F+ + A +G V + G +
Sbjct: 30 AKKGFGFVTPDHPEEYPFDIFIPARDLKGA-----LDGDHVVVSLFPNSKEGEKRKGGIH 84
Query: 66 S 66
Sbjct: 85 Q 85
>gi|315156596|gb|EFU00613.1| transcription termination factor Rho [Enterococcus faecalis TX0043]
Length = 430
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 100
>gi|313631901|gb|EFR99050.1| transcription termination factor Rho [Listeria seeligeri FSL
N1-067]
Length = 423
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSTEDIYISASQIRRFELRT---GDKVS 100
>gi|254724688|ref|ZP_05186471.1| transcription termination factor Rho [Bacillus anthracis str.
A1055]
Length = 375
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|23100456|ref|NP_693923.1| transcription termination factor Rho [Oceanobacillus iheyensis
HTE831]
gi|22778689|dbj|BAC14957.1| transcriptional termination factor rho [Oceanobacillus iheyensis
HTE831]
Length = 426
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
P +G+GF+ P + S +D+++ S + +L G V+
Sbjct: 62 PSEGFGFLRPINYSPSAEDIYISASQIRRF---DLRNGDKVS 100
>gi|329767679|ref|ZP_08259198.1| transcription termination factor Rho [Gemella haemolysans M341]
gi|328839029|gb|EGF88617.1| transcription termination factor Rho [Gemella haemolysans M341]
Length = 422
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P+ G+GF+ + D+++ S + L +G V + V+ G+ A L+
Sbjct: 64 PENGFGFLRTVDYKKGETDIYISASQIRRF---ELKKGDEV-FGKVRKPREGERFAGILQ 119
Query: 72 L 72
+
Sbjct: 120 V 120
>gi|323142774|ref|ZP_08077487.1| exoribonuclease II [Succinatimonas hippei YIT 12066]
gi|322417419|gb|EFY08040.1| exoribonuclease II [Succinatimonas hippei YIT 12066]
Length = 666
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
+ G+++ D+G+GF+ + + + + ++ G ++ +++D
Sbjct: 20 IRKEGTVRA--TDRGFGFLEASD-----KESYF----ITPNNMRSIMHGDRIS-AVIESD 67
Query: 61 ANGKYSAE 68
GK A
Sbjct: 68 DKGKQQAV 75
>gi|327441451|dbj|BAK17816.1| transcription termination factor [Solibacillus silvestris StLB046]
Length = 427
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSKEDIYISASQIRRF---DLRNGDKVS 100
>gi|299537963|ref|ZP_07051249.1| transcription termination factor Rho [Lysinibacillus fusiformis
ZC1]
gi|298726545|gb|EFI67134.1| transcription termination factor Rho [Lysinibacillus fusiformis
ZC1]
Length = 427
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSKEDIYISASQIRRF---DLRNGDKVS 100
>gi|295112739|emb|CBL31376.1| transcription termination factor Rho [Enterococcus sp. 7L76]
Length = 424
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 60 GYGFLRPINYGPSAEDIYISSSQIRRFGLRN---GDKV 94
>gi|194016545|ref|ZP_03055159.1| transcription termination factor Rho [Bacillus pumilus ATCC 7061]
gi|194012018|gb|EDW21586.1| transcription termination factor Rho [Bacillus pumilus ATCC 7061]
Length = 427
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|156972839|ref|YP_001443746.1| cold shock proteins [Vibrio harveyi ATCC BAA-1116]
gi|156524433|gb|ABU69519.1| hypothetical protein VIBHAR_00516 [Vibrio harveyi ATCC BAA-1116]
Length = 45
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
H ++ S L+E Q V++ Q + Y A N+KL
Sbjct: 8 HFKSIVSECFKKLSEFQKVSFVVEQGNKG--YQAGNVKL 44
>gi|83591218|ref|YP_431227.1| transcription termination factor Rho [Moorella thermoacetica ATCC
39073]
gi|83574132|gb|ABC20684.1| transcription termination factor Rho [Moorella thermoacetica ATCC
39073]
Length = 429
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P G SGDD+++ S + L G V
Sbjct: 71 GYGFLRPFGYLASGDDIYISASQIRRFDLRT---GDKV 105
>gi|498013|gb|AAA61300.1| X104 [Homo sapiens]
Length = 1116
Score = 35.4 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|52082242|ref|YP_081033.1| transcription termination factor Rho [Bacillus licheniformis ATCC
14580]
gi|52787634|ref|YP_093463.1| transcription termination factor Rho [Bacillus licheniformis ATCC
14580]
gi|319648116|ref|ZP_08002333.1| transcription termination factor rho [Bacillus sp. BT1B_CT2]
gi|52005453|gb|AAU25395.1| transcriptional terminator Rho [Bacillus licheniformis ATCC 14580]
gi|52350136|gb|AAU42770.1| Rho [Bacillus licheniformis ATCC 14580]
gi|317389751|gb|EFV70561.1| transcription termination factor rho [Bacillus sp. BT1B_CT2]
Length = 427
Score = 35.4 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|317493576|ref|ZP_07951997.1| ribonuclease R [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918519|gb|EFV39857.1| ribonuclease R [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 850
Score = 35.4 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G++ GYGFI EGS DD++L + G +V V D
Sbjct: 85 KKGTVIG--HRDGYGFIRIEGSK-DRDDLYLSSEQMKLCIH-----GDVVLAQVVGTDRK 136
Query: 63 GKYSAENLKLVPKSSN 78
G+ A ++++ +
Sbjct: 137 GRREARIVRVLEPKQS 152
>gi|169826570|ref|YP_001696728.1| transcription termination factor Rho [Lysinibacillus sphaericus
C3-41]
gi|168991058|gb|ACA38598.1| Transcription termination factor rho [Lysinibacillus sphaericus
C3-41]
Length = 427
Score = 35.0 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSKEDIYISASQIRRF---DLRNGDKVS 100
>gi|152977518|ref|YP_001377035.1| transcription termination factor Rho [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026270|gb|ABS24040.1| transcription termination factor Rho [Bacillus cytotoxicus NVH
391-98]
Length = 423
Score = 35.0 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|126652575|ref|ZP_01724739.1| transcription termination factor Rho [Bacillus sp. B14905]
gi|126590566|gb|EAZ84683.1| transcription termination factor Rho [Bacillus sp. B14905]
Length = 427
Score = 35.0 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSKEDIYISASQIRRF---DLRNGDKVS 100
>gi|228968461|ref|ZP_04129450.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228791241|gb|EEM38854.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 419
Score = 35.0 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|49480416|ref|YP_039325.1| transcription termination factor Rho [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52140230|ref|YP_086601.1| transcription termination factor Rho [Bacillus cereus E33L]
gi|118480366|ref|YP_897517.1| transcription termination factor Rho [Bacillus thuringiensis str.
Al Hakam]
gi|196036945|ref|ZP_03104325.1| transcription termination factor Rho [Bacillus cereus W]
gi|196041031|ref|ZP_03108328.1| transcription termination factor Rho [Bacillus cereus NVH0597-99]
gi|218906510|ref|YP_002454344.1| transcription termination factor Rho [Bacillus cereus AH820]
gi|225867313|ref|YP_002752691.1| transcription termination factor Rho [Bacillus cereus 03BB102]
gi|228917941|ref|ZP_04081477.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228930341|ref|ZP_04093345.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228936617|ref|ZP_04099411.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228949053|ref|ZP_04111325.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229094444|ref|ZP_04225516.1| Transcription termination factor Rho [Bacillus cereus Rock3-42]
gi|229124836|ref|ZP_04254014.1| Transcription termination factor Rho [Bacillus cereus 95/8201]
gi|229187557|ref|ZP_04314697.1| Transcription termination factor Rho [Bacillus cereus BGSC 6E1]
gi|300117846|ref|ZP_07055613.1| transcription termination factor Rho [Bacillus cereus SJ1]
gi|301056800|ref|YP_003795011.1| transcription termination factor Rho [Bacillus anthracis CI]
gi|49331972|gb|AAT62618.1| transcription termination factor Rho [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51973699|gb|AAU15249.1| transcription termination factor Rho [Bacillus cereus E33L]
gi|118419591|gb|ABK88010.1| transcription termination factor Rho [Bacillus thuringiensis str.
Al Hakam]
gi|195990447|gb|EDX54435.1| transcription termination factor Rho [Bacillus cereus W]
gi|196028199|gb|EDX66809.1| transcription termination factor Rho [Bacillus cereus NVH0597-99]
gi|218536658|gb|ACK89056.1| transcription termination factor Rho [Bacillus cereus AH820]
gi|225788441|gb|ACO28658.1| transcription termination factor Rho [Bacillus cereus 03BB102]
gi|228595924|gb|EEK53604.1| Transcription termination factor Rho [Bacillus cereus BGSC 6E1]
gi|228658627|gb|EEL14289.1| Transcription termination factor Rho [Bacillus cereus 95/8201]
gi|228688981|gb|EEL42808.1| Transcription termination factor Rho [Bacillus cereus Rock3-42]
gi|228810626|gb|EEM56975.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823052|gb|EEM68890.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228829327|gb|EEM74960.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228841738|gb|EEM86849.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|298724710|gb|EFI65385.1| transcription termination factor Rho [Bacillus cereus SJ1]
gi|300378969|gb|ADK07873.1| transcription termination factor Rho [Bacillus cereus biovar
anthracis str. CI]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|30265355|ref|NP_847732.1| transcription termination factor Rho [Bacillus anthracis str.
Ames]
gi|49188167|ref|YP_031420.1| transcription termination factor Rho [Bacillus anthracis str.
Sterne]
gi|50196969|ref|YP_052656.1| transcription termination factor Rho [Bacillus anthracis str.
'Ames Ancestor']
gi|165871258|ref|ZP_02215907.1| transcription termination factor Rho [Bacillus anthracis str.
A0488]
gi|167636685|ref|ZP_02394973.1| transcription termination factor Rho [Bacillus anthracis str.
A0442]
gi|167640450|ref|ZP_02398714.1| transcription termination factor Rho [Bacillus anthracis str.
A0193]
gi|170688189|ref|ZP_02879400.1| transcription termination factor Rho [Bacillus anthracis str.
A0465]
gi|170709367|ref|ZP_02899780.1| transcription termination factor Rho [Bacillus anthracis str.
A0389]
gi|177651843|ref|ZP_02934426.1| transcription termination factor Rho [Bacillus anthracis str.
A0174]
gi|190569097|ref|ZP_03021996.1| transcription termination factor Rho [Bacillus anthracis
Tsiankovskii-I]
gi|227818095|ref|YP_002818104.1| transcription termination factor Rho [Bacillus anthracis str. CDC
684]
gi|229602998|ref|YP_002869547.1| transcription termination factor Rho [Bacillus anthracis str.
A0248]
gi|254687226|ref|ZP_05151084.1| transcription termination factor Rho [Bacillus anthracis str.
CNEVA-9066]
gi|254735261|ref|ZP_05192970.1| transcription termination factor Rho [Bacillus anthracis str.
Western North America USA6153]
gi|254744464|ref|ZP_05202144.1| transcription termination factor Rho [Bacillus anthracis str.
Kruger B]
gi|254755802|ref|ZP_05207834.1| transcription termination factor Rho [Bacillus anthracis str.
Vollum]
gi|254762142|ref|ZP_05213988.1| transcription termination factor Rho [Bacillus anthracis str.
Australia 94]
gi|30260033|gb|AAP29218.1| transcription termination factor Rho [Bacillus anthracis str.
Ames]
gi|49182094|gb|AAT57470.1| transcription termination factor Rho [Bacillus anthracis str.
Sterne]
gi|50083031|gb|AAT70164.1| transcription termination factor Rho [Bacillus anthracis str.
'Ames Ancestor']
gi|164712925|gb|EDR18453.1| transcription termination factor Rho [Bacillus anthracis str.
A0488]
gi|167511670|gb|EDR87052.1| transcription termination factor Rho [Bacillus anthracis str.
A0193]
gi|167527885|gb|EDR90707.1| transcription termination factor Rho [Bacillus anthracis str.
A0442]
gi|170125715|gb|EDS94629.1| transcription termination factor Rho [Bacillus anthracis str.
A0389]
gi|170667882|gb|EDT18634.1| transcription termination factor Rho [Bacillus anthracis str.
A0465]
gi|172082547|gb|EDT67611.1| transcription termination factor Rho [Bacillus anthracis str.
A0174]
gi|190559765|gb|EDV13751.1| transcription termination factor Rho [Bacillus anthracis
Tsiankovskii-I]
gi|227003371|gb|ACP13114.1| transcription termination factor Rho [Bacillus anthracis str. CDC
684]
gi|229267406|gb|ACQ49043.1| transcription termination factor Rho [Bacillus anthracis str.
A0248]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|30023363|ref|NP_834994.1| transcription termination factor Rho [Bacillus cereus ATCC 14579]
gi|75764015|ref|ZP_00743630.1| Transcription termination factor rho [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|206970466|ref|ZP_03231419.1| transcription termination factor Rho [Bacillus cereus AH1134]
gi|218232465|ref|YP_002370109.1| transcription termination factor Rho [Bacillus cereus B4264]
gi|218900458|ref|YP_002448869.1| transcription termination factor Rho [Bacillus cereus G9842]
gi|228903807|ref|ZP_04067923.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
4222]
gi|228911171|ref|ZP_04074977.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
200]
gi|228924068|ref|ZP_04087344.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228942479|ref|ZP_04105016.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228955580|ref|ZP_04117581.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228961596|ref|ZP_04123205.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228975411|ref|ZP_04135967.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228982048|ref|ZP_04142341.1| Transcription termination factor Rho [Bacillus thuringiensis
Bt407]
gi|229072799|ref|ZP_04205998.1| Transcription termination factor Rho [Bacillus cereus F65185]
gi|229082546|ref|ZP_04215009.1| Transcription termination factor Rho [Bacillus cereus Rock4-2]
gi|229112745|ref|ZP_04242278.1| Transcription termination factor Rho [Bacillus cereus Rock1-15]
gi|229130581|ref|ZP_04259537.1| Transcription termination factor Rho [Bacillus cereus BDRD-Cer4]
gi|229147872|ref|ZP_04276213.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST24]
gi|229153495|ref|ZP_04281673.1| Transcription termination factor Rho [Bacillus cereus m1550]
gi|229181581|ref|ZP_04308906.1| Transcription termination factor Rho [Bacillus cereus 172560W]
gi|229193584|ref|ZP_04320528.1| Transcription termination factor Rho [Bacillus cereus ATCC 10876]
gi|296505756|ref|YP_003667456.1| transcription termination factor Rho [Bacillus thuringiensis
BMB171]
gi|29898924|gb|AAP12195.1| Transcription termination factor rho [Bacillus cereus ATCC 14579]
gi|74488496|gb|EAO52097.1| Transcription termination factor rho [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|206735043|gb|EDZ52212.1| transcription termination factor Rho [Bacillus cereus AH1134]
gi|218160422|gb|ACK60414.1| transcription termination factor Rho [Bacillus cereus B4264]
gi|218543153|gb|ACK95547.1| transcription termination factor Rho [Bacillus cereus G9842]
gi|228589889|gb|EEK47764.1| Transcription termination factor Rho [Bacillus cereus ATCC 10876]
gi|228601777|gb|EEK59273.1| Transcription termination factor Rho [Bacillus cereus 172560W]
gi|228630099|gb|EEK86750.1| Transcription termination factor Rho [Bacillus cereus m1550]
gi|228635522|gb|EEK92011.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST24]
gi|228652920|gb|EEL08802.1| Transcription termination factor Rho [Bacillus cereus BDRD-Cer4]
gi|228670726|gb|EEL26037.1| Transcription termination factor Rho [Bacillus cereus Rock1-15]
gi|228700978|gb|EEL53501.1| Transcription termination factor Rho [Bacillus cereus Rock4-2]
gi|228710290|gb|EEL62265.1| Transcription termination factor Rho [Bacillus cereus F65185]
gi|228777712|gb|EEM25986.1| Transcription termination factor Rho [Bacillus thuringiensis
Bt407]
gi|228784393|gb|EEM32416.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228798078|gb|EEM45082.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228804083|gb|EEM50701.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228817221|gb|EEM63309.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228835558|gb|EEM80923.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228848534|gb|EEM93382.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
200]
gi|228855834|gb|EEN00378.1| Transcription termination factor Rho [Bacillus thuringiensis IBL
4222]
gi|296326808|gb|ADH09736.1| transcription termination factor Rho [Bacillus thuringiensis
BMB171]
gi|326943130|gb|AEA19026.1| transcription termination factor Rho [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|316972566|gb|EFV56239.1| putative cold-shock DNA-binding domain protein [Trichinella
spiralis]
Length = 625
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
YGFI + D F H +V S + G V + ++ + A+ ++ +
Sbjct: 31 YGFI----LDRNQDRYFFHFGSVLSNP-EIIRPGDAVEFVIGKDRKTDRIHAQQVRRLRD 85
Query: 76 SS 77
S
Sbjct: 86 PS 87
>gi|229087824|ref|ZP_04219939.1| Transcription termination factor Rho [Bacillus cereus Rock3-44]
gi|228695485|gb|EEL48355.1| Transcription termination factor Rho [Bacillus cereus Rock3-44]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|89095596|ref|ZP_01168490.1| transcription termination factor Rho [Bacillus sp. NRRL B-14911]
gi|89089342|gb|EAR68449.1| transcription termination factor Rho [Bacillus sp. NRRL B-14911]
Length = 424
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|47569757|ref|ZP_00240429.1| transcription termination factor Rho [Bacillus cereus G9241]
gi|47553553|gb|EAL11932.1| transcription termination factor Rho [Bacillus cereus G9241]
Length = 404
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|229164280|ref|ZP_04292213.1| Transcription termination factor Rho [Bacillus cereus R309803]
gi|228619220|gb|EEK76113.1| Transcription termination factor Rho [Bacillus cereus R309803]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|163943020|ref|YP_001647904.1| transcription termination factor Rho [Bacillus weihenstephanensis
KBAB4]
gi|229064982|ref|ZP_04200280.1| Transcription termination factor Rho [Bacillus cereus AH603]
gi|229136151|ref|ZP_04264904.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST196]
gi|229170041|ref|ZP_04297732.1| Transcription termination factor Rho [Bacillus cereus AH621]
gi|163865217|gb|ABY46276.1| transcription termination factor Rho [Bacillus weihenstephanensis
KBAB4]
gi|228613388|gb|EEK70522.1| Transcription termination factor Rho [Bacillus cereus AH621]
gi|228647310|gb|EEL03392.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST196]
gi|228716283|gb|EEL67995.1| Transcription termination factor Rho [Bacillus cereus AH603]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|47093877|ref|ZP_00231619.1| transcription termination factor Rho [Listeria monocytogenes str.
4b H7858]
gi|47017751|gb|EAL08542.1| transcription termination factor Rho [Listeria monocytogenes str.
4b H7858]
Length = 423
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + L G V+
Sbjct: 65 GFGFLRPINYSSSSEDIYISASKIRRFELRT---GDKVS 100
>gi|313239188|emb|CBY14146.1| unnamed protein product [Oikopleura dioica]
Length = 180
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDANGKYSA 67
YGFI S +F H S VA+ G L V ++ + ++ NG+ A
Sbjct: 64 YGFIDVLDSRG---RIFFHFSQVANGGNNEQLRVADEVEFEMIMDERNGRIVA 113
>gi|42784505|ref|NP_981752.1| transcription termination factor Rho [Bacillus cereus ATCC 10987]
gi|217962821|ref|YP_002341399.1| transcription termination factor Rho [Bacillus cereus AH187]
gi|222098803|ref|YP_002532861.1| transcription termination factor rho [Bacillus cereus Q1]
gi|229033965|ref|ZP_04188918.1| Transcription termination factor Rho [Bacillus cereus AH1271]
gi|229076546|ref|ZP_04209506.1| Transcription termination factor Rho [Bacillus cereus Rock4-18]
gi|229099765|ref|ZP_04230690.1| Transcription termination factor Rho [Bacillus cereus Rock3-29]
gi|229105924|ref|ZP_04236548.1| Transcription termination factor Rho [Bacillus cereus Rock3-28]
gi|229118827|ref|ZP_04248176.1| Transcription termination factor Rho [Bacillus cereus Rock1-3]
gi|229142075|ref|ZP_04270600.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST26]
gi|229176008|ref|ZP_04303503.1| Transcription termination factor Rho [Bacillus cereus MM3]
gi|229199457|ref|ZP_04326120.1| Transcription termination factor Rho [Bacillus cereus m1293]
gi|42740437|gb|AAS44360.1| transcription termination factor Rho [Bacillus cereus ATCC 10987]
gi|217063665|gb|ACJ77915.1| transcription termination factor Rho [Bacillus cereus AH187]
gi|221242862|gb|ACM15572.1| transcription termination factor Rho [Bacillus cereus Q1]
gi|228584033|gb|EEK42188.1| Transcription termination factor Rho [Bacillus cereus m1293]
gi|228607440|gb|EEK64767.1| Transcription termination factor Rho [Bacillus cereus MM3]
gi|228641364|gb|EEK97670.1| Transcription termination factor Rho [Bacillus cereus BDRD-ST26]
gi|228664628|gb|EEL20121.1| Transcription termination factor Rho [Bacillus cereus Rock1-3]
gi|228677498|gb|EEL31751.1| Transcription termination factor Rho [Bacillus cereus Rock3-28]
gi|228683654|gb|EEL37607.1| Transcription termination factor Rho [Bacillus cereus Rock3-29]
gi|228706579|gb|EEL58792.1| Transcription termination factor Rho [Bacillus cereus Rock4-18]
gi|228728340|gb|EEL79363.1| Transcription termination factor Rho [Bacillus cereus AH1271]
gi|324329281|gb|ADY24541.1| transcription termination factor Rho [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 423
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|197335706|ref|YP_002157110.1| ribonuclease R [Vibrio fischeri MJ11]
gi|197317196|gb|ACH66643.1| ribonuclease R [Vibrio fischeri MJ11]
Length = 835
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + G+G+I PEGS +DV L + + G +V D
Sbjct: 88 MLKGVV--LGHRDGFGWIRPEGSLGKDNDVLLPFHQ-----MKKVIHGDVVLVQPTGTDK 140
Query: 62 NGKYSAENLKLVPK 75
G+ ++++
Sbjct: 141 RGRKEGRVVRVLEP 154
>gi|59712921|ref|YP_205697.1| exoribonuclease R, RNase R [Vibrio fischeri ES114]
gi|59481022|gb|AAW86809.1| exoribonuclease R, RNase R [Vibrio fischeri ES114]
Length = 835
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
+ +G + G+G+I PEGS +DV L + + G +V D
Sbjct: 88 MLKGVV--LGHRDGFGWIRPEGSLGKDNDVLLPFHQ-----MKKVIHGDVVLVQPTGTDK 140
Query: 62 NGKYSAENLKLVPK 75
G+ ++++
Sbjct: 141 RGRKEGRVVRVLEP 154
>gi|229014501|ref|ZP_04171619.1| Transcription termination factor Rho [Bacillus mycoides DSM 2048]
gi|228746851|gb|EEL96736.1| Transcription termination factor Rho [Bacillus mycoides DSM 2048]
Length = 421
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 62 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 97
>gi|229020551|ref|ZP_04177295.1| Transcription termination factor Rho [Bacillus cereus AH1273]
gi|229026771|ref|ZP_04183103.1| Transcription termination factor Rho [Bacillus cereus AH1272]
gi|228734494|gb|EEL85156.1| Transcription termination factor Rho [Bacillus cereus AH1272]
gi|228740746|gb|EEL91000.1| Transcription termination factor Rho [Bacillus cereus AH1273]
Length = 423
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|228988559|ref|ZP_04148646.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229158893|ref|ZP_04286950.1| Transcription termination factor Rho [Bacillus cereus ATCC 4342]
gi|228624504|gb|EEK81274.1| Transcription termination factor Rho [Bacillus cereus ATCC 4342]
gi|228771176|gb|EEM19655.1| Transcription termination factor Rho [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 423
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|281336058|gb|ADA62607.1| hypothetical protein SAP024A_042 [Staphylococcus epidermidis]
gi|319400536|gb|EFV88768.1| hypothetical protein GSEF_1339 [Staphylococcus epidermidis
FRI909]
Length = 43
Score = 35.0 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 40 SAGLFNLTEGQLVTYDYVQNDAN 62
G +L EGQ V +D V+
Sbjct: 21 GEGYKSLEEGQNVDFDIVEGQRG 43
>gi|228994051|ref|ZP_04153952.1| Transcription termination factor Rho [Bacillus pseudomycoides DSM
12442]
gi|229000119|ref|ZP_04159689.1| Transcription termination factor Rho [Bacillus mycoides Rock3-17]
gi|229007639|ref|ZP_04165233.1| Transcription termination factor Rho [Bacillus mycoides Rock1-4]
gi|228753650|gb|EEM03094.1| Transcription termination factor Rho [Bacillus mycoides Rock1-4]
gi|228759656|gb|EEM08632.1| Transcription termination factor Rho [Bacillus mycoides Rock3-17]
gi|228765699|gb|EEM14352.1| Transcription termination factor Rho [Bacillus pseudomycoides DSM
12442]
Length = 423
Score = 35.0 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|288554069|ref|YP_003426004.1| ribonuclease R [Bacillus pseudofirmus OF4]
gi|288545229|gb|ADC49112.1| ribonuclease R [Bacillus pseudofirmus OF4]
Length = 791
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
KG+ FI P+ DV++ ++ + SA G V Q+ + + ++
Sbjct: 78 HAKGFAFIIPDIE--GEKDVYVSQADLESA-----MNGDTVLVRLHQHSRGDRPEGKVVR 130
Query: 72 LVPKS 76
++ +
Sbjct: 131 ILERG 135
>gi|255011444|ref|ZP_05283570.1| hypothetical protein Bfra3_20035 [Bacteroides fragilis 3_1_12]
Length = 1015
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 9 WYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
W+N KG GF I E AVA +G L GQ +T+D+
Sbjct: 576 WFNGGKG-GFSIRKEAD---------GVKAVAYSGARTLKPGQSITFDFA 615
>gi|282165706|ref|NP_001164101.1| tight junction protein ZO-2 isoform 6 [Homo sapiens]
gi|55664531|emb|CAH70867.1| tight junction protein 2 (zona occludens 2) [Homo sapiens]
Length = 993
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|119582881|gb|EAW62477.1| tight junction protein 2 (zona occludens 2), isoform CRA_b [Homo
sapiens]
Length = 993
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|20799505|gb|AAM28524.1|AF489824_1 tight junction protein 2 [Homo sapiens]
Length = 993
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 20/80 (25%)
Query: 11 NPDKGYGFITP----EGSTESGDDVFLHRSAVASAGLFN--LTEGQLV------------ 52
+ +G+G I + + + S V G + L E V
Sbjct: 39 DSKRGFG-IAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVL 97
Query: 53 -TYDYVQNDANGKYSAENLK 71
++ Q +GK +A +K
Sbjct: 98 HSFAVQQLRKSGKVAAIVVK 117
>gi|15616343|ref|NP_244648.1| transcription termination factor Rho [Bacillus halodurans C-125]
gi|10176406|dbj|BAB07500.1| transcriptional terminator [Bacillus halodurans C-125]
Length = 423
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYMPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|254555582|ref|YP_003061999.1| transcription termination factor Rho [Lactobacillus plantarum JDM1]
gi|254044509|gb|ACT61302.1| transcription termination factor Rho [Lactobacillus plantarum JDM1]
Length = 430
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ +S + GL N G V
Sbjct: 66 GYGFLRPINYGPSQEDIYISQSQIHRFGLRN---GDYV 100
>gi|313149261|ref|ZP_07811454.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313138028|gb|EFR55388.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 1002
Score = 35.0 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 9 WYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
W+N KG GF I E AVA +G L GQ +T+D+
Sbjct: 563 WFNGGKG-GFSIRKEAD---------GVKAVAYSGARTLKPGQSITFDFA 602
>gi|28377399|ref|NP_784291.1| transcription termination factor Rho [Lactobacillus plantarum
WCFS1]
gi|300769644|ref|ZP_07079528.1| transcription termination factor Rho [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308179604|ref|YP_003923732.1| transcription termination factor Rho [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|28270231|emb|CAD63132.1| transcription terminator factor Rho [Lactobacillus plantarum WCFS1]
gi|300492797|gb|EFK27981.1| transcription termination factor Rho [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308045095|gb|ADN97638.1| transcription termination factor Rho [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 430
Score = 35.0 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ +S + GL N G V
Sbjct: 66 GYGFLRPINYGPSQEDIYISQSQIHRFGLRN---GDYV 100
>gi|322501460|emb|CBZ36539.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 516
Score = 35.0 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 275 YEGRVKRFNPIRGYGFVS 292
>gi|322493899|emb|CBZ29190.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 532
Score = 35.0 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 289 YEGRVKRFNPIRGYGFVS 306
>gi|146094945|ref|XP_001467430.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134071795|emb|CAM70488.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
Length = 517
Score = 35.0 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 275 YEGRVKRFNPIRGYGFVS 292
>gi|154342826|ref|XP_001567361.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 547
Score = 35.0 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 303 YEGRVKRFNPIRGYGFVS 320
>gi|157873213|ref|XP_001685120.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68128191|emb|CAJ08322.1| hypothetical protein LMJF_31_1350 [Leishmania major strain
Friedlin]
Length = 514
Score = 35.0 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 275 YEGRVKRFNPIRGYGFVS 292
>gi|295109131|emb|CBL23084.1| transcription termination factor Rho [Ruminococcus obeum A2-162]
Length = 477
Score = 35.0 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
GYGFI +D+++ S + L G +V K+SA
Sbjct: 118 GYGFIRCANYLPGENDIYVSPSQIRRFNLKT---GDIVQGSIRIKTQGEKFSA 167
>gi|258513423|ref|YP_003189645.1| transcription termination factor Rho [Desulfotomaculum
acetoxidans DSM 771]
gi|257777128|gb|ACV61022.1| transcription termination factor Rho [Desulfotomaculum
acetoxidans DSM 771]
Length = 436
Score = 35.0 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S DD+++ S + L G V
Sbjct: 61 GYGFLRPFKYHPSYDDIYVSASQIRRFDLRT---GDRV 95
>gi|298246241|ref|ZP_06970047.1| transcription termination factor Rho [Ktedonobacter racemifer DSM
44963]
gi|297553722|gb|EFH87587.1| transcription termination factor Rho [Ktedonobacter racemifer DSM
44963]
Length = 422
Score = 35.0 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ E DV++ +S + GL G +V+
Sbjct: 61 GFGFLRQERFLPGNMDVYVSQSQIRRFGLRT---GDMVS 96
>gi|241889373|ref|ZP_04776674.1| transcription termination factor Rho [Gemella haemolysans ATCC
10379]
gi|241863916|gb|EER68297.1| transcription termination factor Rho [Gemella haemolysans ATCC
10379]
Length = 422
Score = 35.0 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
P+ G+GF+ + D+++ S + L +G V Y V+ G+ A L+
Sbjct: 64 PENGFGFLRTVDYKKGETDIYISASQIRRF---ELKKGDEV-YGKVRKPREGERYAGILQ 119
Query: 72 L 72
+
Sbjct: 120 V 120
>gi|206602554|gb|EDZ39035.1| Hypothetical protein CGL2_11276203 [Leptospirillum sp. Group II
'5-way CG']
Length = 132
Score = 35.0 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +K + G IT + + S + L +L +G+ V +D +Q++
Sbjct: 63 KGVVKSLDTKAGTVTITHGPIKEFGWKGMTMAFSVKHRSFLSSLKKGEQVQFDVIQDNNG 122
Query: 63 GKYSAENLKLVPKSS 77
+ + +
Sbjct: 123 P-----VITKIEERP 132
>gi|300857052|ref|YP_003782036.1| putative ribonuclease R [Clostridium ljungdahlii DSM 13528]
gi|300437167|gb|ADK16934.1| predicted ribonuclease R [Clostridium ljungdahlii DSM 13528]
Length = 712
Score = 35.0 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDANGKYSAENL 70
KGYGF+ PE G DVF+ S + A G V + D K E +
Sbjct: 75 HQKGYGFVIPEN---EGADVFVPSSYLNGA-----MNGDKVVVKITKMEDKGKKCEGEII 126
Query: 71 KLVPKS 76
+++ ++
Sbjct: 127 RVLERA 132
>gi|294340568|emb|CAZ88953.1| Ribonuclease R (RNase R) (Protein vacB) [Thiomonas sp. 3As]
Length = 775
Score = 34.6 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G ++ G+GF+TP+ G DV+ + + + V + D
Sbjct: 1 MIVEGIVRG--HRDGHGFVTPDD---GGPDVY-----LPPQQMRTVLHLDRVRVRVGKPD 50
Query: 61 ANGKYSAENLKLVPKSS 77
G+ + + ++ +S+
Sbjct: 51 RRGRTEGQIIAILERST 67
>gi|296136332|ref|YP_003643574.1| ribonuclease R [Thiomonas intermedia K12]
gi|295796454|gb|ADG31244.1| ribonuclease R [Thiomonas intermedia K12]
Length = 775
Score = 34.6 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
M+ G ++ G+GF+TP+ G DV+ + + + V + D
Sbjct: 1 MIVEGIVRG--HRDGHGFVTPDD---GGPDVY-----LPPQQMRTVLHLDRVRVRVGKPD 50
Query: 61 ANGKYSAENLKLVPKSS 77
G+ + + ++ +S+
Sbjct: 51 RRGRTEGQIIAILERST 67
>gi|307689327|ref|ZP_07631773.1| transcription termination factor Rho [Clostridium cellulovorans
743B]
Length = 384
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
N +GF+ + +D+++ S + L G V + K+ A L
Sbjct: 25 NESNNFGFLRAGNFVSTSEDIYVSPSQIRRFNLRT---GDEVEGKVREPKEGEKFKA--L 79
Query: 71 KLVPK 75
+ V K
Sbjct: 80 RFVEK 84
>gi|205375308|ref|ZP_03228098.1| transcription termination factor Rho [Bacillus coahuilensis m4-4]
Length = 424
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|254520865|ref|ZP_05132921.1| transcription termination factor Rho [Clostridium sp. 7_2_43FAA]
gi|226914614|gb|EEH99815.1| transcription termination factor Rho [Clostridium sp. 7_2_43FAA]
Length = 374
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 11 NPDKG---------YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
N KG +GF+ +D+++ S + L G V +
Sbjct: 1 NTAKGVLEILENNSFGFLRCNNYQTGENDIYVSPSQIRRFNLRT---GDEVEGKVREAKE 57
Query: 62 NGKYSA 67
K+ A
Sbjct: 58 GEKFKA 63
>gi|119616611|gb|EAW96205.1| cold shock domain protein A, isoform CRA_c [Homo sapiens]
Length = 142
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 43 LFNLTEGQLVTYDYVQNDANGKYSAENLK 71
L ++ +G+ V +D V+ + A N+
Sbjct: 25 LRSVGDGETVEFDVVEGEKG--AEAANVT 51
>gi|220932637|ref|YP_002509545.1| transcription termination factor Rho [Halothermothrix orenii H 168]
gi|219993947|gb|ACL70550.1| transcription termination factor Rho [Halothermothrix orenii H 168]
Length = 418
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
GYGF+ P S DD+++ S + L G +V+ + +Y A
Sbjct: 63 GYGFLRPSKYVPSSDDIYISASQIRRFDLRT---GDVVSGQVREPKEGERYFA 112
>gi|330884561|gb|EGH18710.1| cold shock domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 31
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 42 GLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
G +L EGQ VT+ VQ A+ ++
Sbjct: 1 GFKSLKEGQKVTFVAVQGQKG--MQADEVQ 28
>gi|310828485|ref|YP_003960842.1| ribonuclease R [Eubacterium limosum KIST612]
gi|308740219|gb|ADO37879.1| ribonuclease R [Eubacterium limosum KIST612]
Length = 717
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
+G+GF+TP+ + D+F+ S++ A + V + + + E +K
Sbjct: 79 HSRGFGFVTPDDESMD-QDIFIAPSSLNGA-----LDMDRVEVRLLTAAKDRRAEGEIVK 132
Query: 72 LVPKSSN 78
++ + +
Sbjct: 133 VLERGRS 139
>gi|154342414|ref|XP_001567155.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 517
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 280 YEGRVKRFNPIRGYGFVS 297
>gi|206601467|gb|EDZ37953.1| Hypothetical protein CGL2_10608002 [Leptospirillum sp. Group II
'5-way CG']
Length = 132
Score = 34.6 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +K + G IT + + S + L +L +G+ V +D +Q +
Sbjct: 63 KGVVKSLDTKAGTVTITHGPIKEFGWKGMTMAFSVKHRSFLSSLKKGEQVQFDVIQGNNG 122
Query: 63 GKYSAENLKLVPKSS 77
+ + +
Sbjct: 123 P-----VITKIEERP 132
>gi|323490899|ref|ZP_08096094.1| transcription termination factor Rho [Planococcus donghaensis
MPA1U2]
gi|323395379|gb|EGA88230.1| transcription termination factor Rho [Planococcus donghaensis
MPA1U2]
Length = 427
Score = 34.6 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYSPSSQDIYISASQIRRF---DLRNGDKVS 100
>gi|257899214|ref|ZP_05678867.1| transcription termination factor Rho [Enterococcus faecium Com15]
gi|257837126|gb|EEV62200.1| transcription termination factor Rho [Enterococcus faecium Com15]
Length = 341
Score = 34.6 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + +L G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISASQIRRF---SLRNGDKV 100
>gi|71419829|ref|XP_811288.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70875935|gb|EAN89437.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 383
Score = 34.6 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 25/86 (29%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-----------------------DVFLHRSAVASA 41
G++ + +GYGFI S+ + F RS++
Sbjct: 42 GTVVSFMHRRGYGFIRELESSPGKKKKTHEAAAVAPADADAPGSSAASNFFFPRSSL--D 99
Query: 42 GLFNLTEGQLVTYDYVQNDANGKYSA 67
G F + EGQ V +D + + +A
Sbjct: 100 GGFYVAEGQTVAFDVRLPEQSKNLNA 125
>gi|322505424|emb|CAM42578.2| hypothetical protein, unknown function [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 517
Score = 34.6 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 HRGSIKWYNPDKGYGFIT 20
+ G +K +NP +GYGF++
Sbjct: 280 YEGRVKRFNPIRGYGFVS 297
>gi|332287192|ref|YP_004422093.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
6BC]
gi|325506838|gb|ADZ18476.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
6BC]
gi|328914439|gb|AEB55272.1| exoribonuclease, VacB/Rnb family [Chlamydophila psittaci 6BC]
Length = 681
Score = 34.6 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
KG+GF+TP+ E D+F+ + A +G V N G
Sbjct: 30 KKGFGFVTPDHPEEYPFDIFIPARDLKGA-----LDGDHVVVSLFPNSKEG 75
>gi|329942561|ref|ZP_08291371.1| vacB and RNase II 3'-5' exoribonucleases family protein
[Chlamydophila psittaci Cal10]
gi|313847788|emb|CBY16778.1| putative ribonuclease [Chlamydophila psittaci RD1]
gi|328815471|gb|EGF85459.1| vacB and RNase II 3'-5' exoribonucleases family protein
[Chlamydophila psittaci Cal10]
Length = 682
Score = 34.6 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
KG+GF+TP+ E D+F+ + A +G V N G
Sbjct: 31 KKGFGFVTPDHPEEYPFDIFIPARDLKGA-----LDGDHVVVSLFPNSKEG 76
>gi|291547179|emb|CBL20287.1| transcription termination factor Rho [Ruminococcus sp. SR1/5]
Length = 506
Score = 34.6 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
GYGFI E +D+++ S + L G ++ + K+SA
Sbjct: 147 GYGFIRCENYMPGENDIYVSPSQIRRFNLKT---GDIIQGNIRIKTQGEKFSA 196
>gi|288554413|ref|YP_003426348.1| transcription termination factor Rho [Bacillus pseudofirmus OF4]
gi|288545573|gb|ADC49456.1| transcription termination factor Rho [Bacillus pseudofirmus OF4]
Length = 424
Score = 34.6 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P S +D+++ S + +L G V+
Sbjct: 65 GFGFLRPINYMPSSEDIYISASQIRRF---DLRNGDKVS 100
>gi|65317309|ref|ZP_00390268.1| COG1158: Transcription termination factor [Bacillus anthracis
str. A2012]
Length = 185
Score = 34.6 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P + S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYSPSSEDIYISASQIRRF---DLRNGDKVS 99
>gi|332972912|gb|EGK10854.1| ribonuclease R [Desmospora sp. 8437]
Length = 765
Score = 34.6 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNL-------TEGQLVTYDYVQNDAN 62
KG+GF+ P+ DVF+H + + G F L EG + V+
Sbjct: 71 NAKGFGFVLPDAEFPFEQDVFIHGTDMNGAMDGDFVLARVESYKKEGMRPEGEIVRILKR 130
Query: 63 GKYSAE 68
G+ A
Sbjct: 131 GRTEAV 136
>gi|302875894|ref|YP_003844527.1| transcription termination factor Rho [Clostridium cellulovorans
743B]
gi|302578751|gb|ADL52763.1| transcription termination factor Rho [Clostridium cellulovorans
743B]
Length = 483
Score = 34.6 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
N +GF+ + +D+++ S + L G V + K+ A L
Sbjct: 124 NESNNFGFLRAGNFVSTSEDIYVSPSQIRRFNLRT---GDEVEGKVREPKEGEKFKA--L 178
Query: 71 KLVPK 75
+ V K
Sbjct: 179 RFVEK 183
>gi|259046367|ref|ZP_05736768.1| ribonuclease R [Granulicatella adiacens ATCC 49175]
gi|259037004|gb|EEW38259.1| ribonuclease R [Granulicatella adiacens ATCC 49175]
Length = 764
Score = 34.6 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN-- 69
DKG+GF+T E E D+F+ R+ V A +G V VQ + A +
Sbjct: 78 NDKGFGFVTVE---EGKPDIFIPRTDVHGA-----MDGDTVAIRIVQEENPYNDKAASGT 129
Query: 70 -LKLVPKS 76
+K++ ++
Sbjct: 130 IVKIIERA 137
>gi|78222598|ref|YP_384345.1| 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R [Geobacter
metallireducens GS-15]
gi|78193853|gb|ABB31620.1| RNAse R [Geobacter metallireducens GS-15]
Length = 759
Score = 34.6 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGF+ PEG GDDV++ A+A + G V A GK ++ V
Sbjct: 78 GYGFVIPEG---GGDDVYIPARALAGSMH-----GDTVEVRVETFKAGGKKEGRIVRTVT 129
Query: 75 KS 76
+
Sbjct: 130 RG 131
>gi|331090673|ref|ZP_08339522.1| transcription termination factor Rho [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400087|gb|EGG79738.1| transcription termination factor Rho [Lachnospiraceae bacterium
2_1_46FAA]
Length = 441
Score = 34.6 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
GYGFI +DV++ S + L G +V
Sbjct: 82 GYGFIRCANYLPGENDVYVSPSQIRRFNLKT---GDIVE 117
>gi|206601497|gb|EDZ37981.1| Hypothetical protein CGL2_11216009 [Leptospirillum sp. Group II
'5-way CG']
Length = 132
Score = 34.6 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +K + G IT + + S + L +L +G+ V +D +Q++
Sbjct: 63 KGVVKSLDTKAGTVTITHGPIKEFGWKGMTMAFSVKHRSFLSSLKKGEQVQFDVIQDNNG 122
Query: 63 GKYSAENLKLVPKSS 77
+ + +
Sbjct: 123 P-----VITKIEERP 132
>gi|189424308|ref|YP_001951485.1| ribonuclease R [Geobacter lovleyi SZ]
gi|189420567|gb|ACD94965.1| ribonuclease R [Geobacter lovleyi SZ]
Length = 752
Score = 34.6 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND-ANGKYSAENLKLV 73
GYGF+ PE G+D+F+ + +A G V+ ++ GK + ++
Sbjct: 79 GYGFVKPES---GGEDIFIPGKNINNALH-----GDKVSVRAEKSRSQRGKLEGRVVAVL 130
Query: 74 PKSSN 78
++++
Sbjct: 131 ERANS 135
>gi|299756610|ref|XP_001829465.2| hypothetical protein CC1G_00644 [Coprinopsis cinerea okayama7#130]
gi|298411753|gb|EAU92425.2| hypothetical protein CC1G_00644 [Coprinopsis cinerea okayama7#130]
Length = 324
Score = 34.6 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDANGKYSAE 68
KGYGFI P+ G D L A + +L YD V+ + GK A
Sbjct: 54 KGYGFIIPDMLGYGGTDKPLDHEAYVGTAIAKDL-------YDIVEAEGIGKVIAI 102
>gi|227550382|ref|ZP_03980431.1| transcription termination factor Rho [Enterococcus faecium TX1330]
gi|257897212|ref|ZP_05676865.1| transcription termination factor Rho [Enterococcus faecium Com12]
gi|227180475|gb|EEI61447.1| transcription termination factor Rho [Enterococcus faecium TX1330]
gi|257833777|gb|EEV60198.1| transcription termination factor Rho [Enterococcus faecium Com12]
Length = 431
Score = 34.6 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + +L G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISASQIRRF---SLRNGDKV 100
>gi|322830227|gb|EFZ33322.1| hypothetical protein TCSYLVIO_309 [Trypanosoma cruzi]
Length = 383
Score = 34.6 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 25/86 (29%)
Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-----------------------DVFLHRSAVASA 41
G++ + +GYGFI S+ + F RS++
Sbjct: 42 GTVVSFMHRRGYGFIRELESSPGKKKKTHEAAAVAPADADAPGSSAASNFFFPRSSL--D 99
Query: 42 GLFNLTEGQLVTYDYVQNDANGKYSA 67
G F + EGQ V +D + + +A
Sbjct: 100 GGFYVAEGQTVAFDVRLTEQSKNINA 125
>gi|257879297|ref|ZP_05658950.1| transcription termination factor Rho [Enterococcus faecium
1,230,933]
gi|257881887|ref|ZP_05661540.1| transcription termination factor Rho [Enterococcus faecium
1,231,502]
gi|257885045|ref|ZP_05664698.1| transcription termination factor Rho [Enterococcus faecium
1,231,501]
gi|257888413|ref|ZP_05668066.1| transcription termination factor Rho [Enterococcus faecium
1,141,733]
gi|257890123|ref|ZP_05669776.1| transcription termination factor Rho [Enterococcus faecium
1,231,410]
gi|257893451|ref|ZP_05673104.1| transcription termination factor Rho [Enterococcus faecium
1,231,408]
gi|258615702|ref|ZP_05713472.1| transcription termination factor Rho [Enterococcus faecium DO]
gi|260558739|ref|ZP_05830928.1| transcription termination factor Rho [Enterococcus faecium C68]
gi|261207334|ref|ZP_05922021.1| transcription termination factor Rho [Enterococcus faecium TC 6]
gi|289566534|ref|ZP_06446957.1| transcription termination factor Rho [Enterococcus faecium D344SRF]
gi|293379628|ref|ZP_06625765.1| transcription termination factor Rho [Enterococcus faecium PC4.1]
gi|293557254|ref|ZP_06675802.1| transcription termination factor Rho [Enterococcus faecium E1039]
gi|293559601|ref|ZP_06676135.1| transcription termination factor Rho [Enterococcus faecium E1162]
gi|293567596|ref|ZP_06678940.1| transcription termination factor Rho [Enterococcus faecium E1071]
gi|293570360|ref|ZP_06681417.1| transcription termination factor Rho [Enterococcus faecium E980]
gi|294616555|ref|ZP_06696333.1| transcription termination factor Rho [Enterococcus faecium E1636]
gi|294619267|ref|ZP_06698739.1| transcription termination factor Rho [Enterococcus faecium E1679]
gi|294621951|ref|ZP_06701098.1| transcription termination factor Rho [Enterococcus faecium U0317]
gi|314937942|ref|ZP_07845258.1| transcription termination factor Rho [Enterococcus faecium
TX0133a04]
gi|314941433|ref|ZP_07848326.1| transcription termination factor Rho [Enterococcus faecium TX0133C]
gi|314948513|ref|ZP_07851893.1| transcription termination factor Rho [Enterococcus faecium TX0082]
gi|314951268|ref|ZP_07854322.1| transcription termination factor Rho [Enterococcus faecium TX0133A]
gi|314994297|ref|ZP_07859597.1| transcription termination factor Rho [Enterococcus faecium TX0133B]
gi|314998105|ref|ZP_07862993.1| transcription termination factor Rho [Enterococcus faecium
TX0133a01]
gi|257813525|gb|EEV42283.1| transcription termination factor Rho [Enterococcus faecium
1,230,933]
gi|257817545|gb|EEV44873.1| transcription termination factor Rho [Enterococcus faecium
1,231,502]
gi|257820897|gb|EEV48031.1| transcription termination factor Rho [Enterococcus faecium
1,231,501]
gi|257824467|gb|EEV51399.1| transcription termination factor Rho [Enterococcus faecium
1,141,733]
gi|257826483|gb|EEV53109.1| transcription termination factor Rho [Enterococcus faecium
1,231,410]
gi|257829830|gb|EEV56437.1| transcription termination factor Rho [Enterococcus faecium
1,231,408]
gi|260075198|gb|EEW63511.1| transcription termination factor Rho [Enterococcus faecium C68]
gi|260078394|gb|EEW66098.1| transcription termination factor Rho [Enterococcus faecium TC 6]
gi|289161688|gb|EFD09565.1| transcription termination factor Rho [Enterococcus faecium D344SRF]
gi|291589697|gb|EFF21501.1| transcription termination factor Rho [Enterococcus faecium E1071]
gi|291590602|gb|EFF22333.1| transcription termination factor Rho [Enterococcus faecium E1636]
gi|291594487|gb|EFF25892.1| transcription termination factor Rho [Enterococcus faecium E1679]
gi|291598470|gb|EFF29540.1| transcription termination factor Rho [Enterococcus faecium U0317]
gi|291600618|gb|EFF30922.1| transcription termination factor Rho [Enterococcus faecium E1039]
gi|291606477|gb|EFF35877.1| transcription termination factor Rho [Enterococcus faecium E1162]
gi|291609538|gb|EFF38803.1| transcription termination factor Rho [Enterococcus faecium E980]
gi|292641777|gb|EFF59950.1| transcription termination factor Rho [Enterococcus faecium PC4.1]
gi|313587947|gb|EFR66792.1| transcription termination factor Rho [Enterococcus faecium
TX0133a01]
gi|313591291|gb|EFR70136.1| transcription termination factor Rho [Enterococcus faecium TX0133B]
gi|313596485|gb|EFR75330.1| transcription termination factor Rho [Enterococcus faecium TX0133A]
gi|313599856|gb|EFR78699.1| transcription termination factor Rho [Enterococcus faecium TX0133C]
gi|313642800|gb|EFS07380.1| transcription termination factor Rho [Enterococcus faecium
TX0133a04]
gi|313645010|gb|EFS09590.1| transcription termination factor Rho [Enterococcus faecium TX0082]
Length = 431
Score = 34.6 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + +L G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISASQIRRF---SLRNGDKV 100
>gi|259047220|ref|ZP_05737621.1| transcription termination factor rho [Granulicatella adiacens ATCC
49175]
gi|259036270|gb|EEW37525.1| transcription termination factor rho [Granulicatella adiacens ATCC
49175]
Length = 422
Score = 34.6 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
N +G+GF+ P + S +D+++ S + +L G LV+
Sbjct: 65 NRAEGFGFLRPINYSSSQEDIYISSSQIRRF---DLRNGDLVS 104
>gi|297569201|ref|YP_003690545.1| Cold-shock protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296925116|gb|ADH85926.1| Cold-shock protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 184
Score = 34.6 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
T G+ ++ HR++V G +L G V + D A ++
Sbjct: 134 ETPDGELIYFHRNSVLGGGFDSLEVGSEVRFSEEMGDKG--LQASSV 178
>gi|323692434|ref|ZP_08106669.1| ribonuclease R [Clostridium symbiosum WAL-14673]
gi|323503486|gb|EGB19313.1| ribonuclease R [Clostridium symbiosum WAL-14673]
Length = 733
Score = 34.3 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
KG+GF++ EG DVF+ A G V + D + ++
Sbjct: 99 HSKGFGFVSVEGRE---KDVFIPGDRTGGAMH-----GDKVQIVIEEEDNGKRAEGCVVR 150
Query: 72 LVPKS 76
++ +
Sbjct: 151 VLEHA 155
>gi|225575050|ref|ZP_03783660.1| hypothetical protein RUMHYD_03139 [Blautia hydrogenotrophica DSM
10507]
gi|225037720|gb|EEG47966.1| hypothetical protein RUMHYD_03139 [Blautia hydrogenotrophica DSM
10507]
Length = 484
Score = 34.3 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGFI E +D+++ +S + L G +V
Sbjct: 126 GYGFIRCENYLPGENDIYVSQSQIRKFNLKT---GDIV 160
>gi|83319777|ref|YP_424091.1| 3'-5' exoribonuclease [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283663|gb|ABC01595.1| Rnase R (VacB) and RNase II family 3'-5' exoribonucleases
[Mycoplasma capricolum subsp. capricolum ATCC 27343]
Length = 704
Score = 34.3 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G+IK NP KG+GFI + + + +D F+ + ++ V Y Q + +
Sbjct: 62 KKGTIK-LNP-KGFGFIN-DINKINDEDHFIAGVDLNNSIHQ-----DEVVYILKQEE-D 112
Query: 63 GKYSAENLKLVPK 75
+ A + L+ +
Sbjct: 113 NRLKAIVIDLIKR 125
>gi|260589195|ref|ZP_05855108.1| transcription termination factor Rho [Blautia hansenii DSM 20583]
gi|260540276|gb|EEX20845.1| transcription termination factor Rho [Blautia hansenii DSM 20583]
Length = 451
Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLV 52
GYGFI + +DV++ S + L L V
Sbjct: 92 GYGFIRSDNYLPGENDVYVSPSQIRRFNLKTGDILKGNTRV 132
>gi|121594994|ref|YP_986890.1| hypothetical protein Ajs_2667 [Acidovorax sp. JS42]
gi|120607074|gb|ABM42814.1| conserved hypothetical protein [Acidovorax sp. JS42]
Length = 113
Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDV--FLHRSAVASAG-LFNLTEGQLVTYDYVQ 58
+ G +K + D G IT + D+ + G L NL G V + VQ
Sbjct: 42 MTDGEVKKVDLDNGK--ITLKHGDIKNLDMPGMTMVFTIRDKGQLTNLKPGDKVQFMVVQ 99
Query: 59 NDANGKYSAENLKLV 73
GK +++LV
Sbjct: 100 E--GGKMIVTDIQLV 112
>gi|292492283|ref|YP_003527722.1| ribosomal subunit interface protein [Nitrosococcus halophilus Nc4]
gi|291580878|gb|ADE15335.1| ribosomal subunit interface protein [Nitrosococcus halophilus Nc4]
Length = 182
Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
T G +++ HR++V + +L G+ V + + D + S +LK
Sbjct: 134 ETVDGREIYFHRNSVLNEDFKDLQVGREVRFTEEEGDLGPQASTVHLK 181
>gi|163815259|ref|ZP_02206636.1| hypothetical protein COPEUT_01419 [Coprococcus eutactus ATCC 27759]
gi|158449454|gb|EDP26449.1| hypothetical protein COPEUT_01419 [Coprococcus eutactus ATCC 27759]
Length = 539
Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
GYGFI D+++ + + GL G ++T + K+SA
Sbjct: 179 GYGFIRSANYLPGDQDIYVSPAQIRRFGLKT---GDIITGNIRNKTQGEKFSA 228
>gi|331082611|ref|ZP_08331734.1| transcription termination factor Rho [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400230|gb|EGG79872.1| transcription termination factor Rho [Lachnospiraceae bacterium
6_1_63FAA]
Length = 451
Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLV 52
GYGFI + +DV++ S + L L V
Sbjct: 92 GYGFIRSDNYLPGENDVYVSPSQIRRFNLKTGDILKGNTRV 132
>gi|257066263|ref|YP_003152519.1| ribonuclease R [Anaerococcus prevotii DSM 20548]
gi|256798143|gb|ACV28798.1| ribonuclease R [Anaerococcus prevotii DSM 20548]
Length = 708
Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
+ +KG+GF+ P+ + G+D+F+ A V + + +GK
Sbjct: 142 FQKNKGFGFVIPDDRSY-GEDIFIAEKFFNKAKNK-----DKVVVEIINYPKDGKP 191
>gi|94265826|ref|ZP_01289558.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
gi|93453633|gb|EAT04023.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
Length = 188
Score = 34.3 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
T G+ ++ HR++V +G +L G V + D A + + K
Sbjct: 134 ETPDGELIYFHRNSVLGSGYDSLDVGSKVRFSEEMGDNG--LRASTVHPLTKKP 185
>gi|163789892|ref|ZP_02184328.1| transcription termination factor Rho [Carnobacterium sp. AT7]
gi|159874832|gb|EDP68900.1| transcription termination factor Rho [Carnobacterium sp. AT7]
Length = 431
Score = 34.3 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
+GF+ P T S +D+++ S + GL N G V+
Sbjct: 67 FGFLRPINYTPSKEDIYISSSQIKRFGLRN---GDKVS 101
>gi|320538110|ref|ZP_08038007.1| hypothetical protein HMPREF9554_02765 [Treponema phagedenis F0421]
gi|320145044|gb|EFW36763.1| hypothetical protein HMPREF9554_02765 [Treponema phagedenis F0421]
Length = 323
Score = 34.3 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDY------ 56
G+IK + +G I + + + +L EG VT+
Sbjct: 241 NGAIKRFKEKDHWGVIE----NKEYGLFQFSYTNLCKDSRRNSLAEGTPVTFSVFRMPNP 296
Query: 57 ---VQNDANGKYSAENLKLV-PKSSN 78
NG+ A N+K+V P+ N
Sbjct: 297 KAETLEKRNGR--ASNVKVVKPEKPN 320
>gi|62087216|dbj|BAD92055.1| germ cell specific Y-box binding protein variant [Homo sapiens]
Length = 268
Score = 34.3 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 34 HRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENLK 71
+++A+ L ++ +G+ V +D V+ + A N+
Sbjct: 26 NQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKG--AEATNVT 65
>gi|304407310|ref|ZP_07388963.1| transcription termination factor Rho [Paenibacillus
curdlanolyticus YK9]
gi|304343751|gb|EFM09592.1| transcription termination factor Rho [Paenibacillus
curdlanolyticus YK9]
Length = 456
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P S +D+++ +S + L + G LV+
Sbjct: 64 GFGFLRPINYASSNEDIYISQSQIRRFDLRS---GDLVS 99
>gi|257870029|ref|ZP_05649682.1| transcription termination factor Rho [Enterococcus gallinarum EG2]
gi|257804193|gb|EEV33015.1| transcription termination factor Rho [Enterococcus gallinarum EG2]
Length = 431
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + +L G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRF---SLRNGDKV 100
>gi|293343215|ref|XP_002725422.1| PREDICTED: Y box binding protein 1-like [Rattus norvegicus]
gi|293355088|ref|XP_002728620.1| PREDICTED: Y box binding protein 1-like [Rattus norvegicus]
Length = 101
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKY 65
+N G G I + +DVF+H++A+ L ++ + + V +D+V+ + +
Sbjct: 6 FNVWNGCGLINRNDTK---EDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKD--V 60
Query: 66 SAENLKLV 73
A ++ +
Sbjct: 61 EAASVTGL 68
>gi|251773135|gb|EES53689.1| conserved protein of unknown function [Leptospirillum
ferrodiazotrophum]
Length = 118
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+G +K + G IT + + S + L +L +G+ V +D +Q++
Sbjct: 49 KGVVKSLDTKAGTVTITHGPIKEFGWKGMTMAFSVKHRSFLSSLKKGEQVQFDVIQDNNG 108
Query: 63 GKYSAENLKLVPKSS 77
+ + +
Sbjct: 109 P-----VITKIEERP 118
>gi|269926445|ref|YP_003323068.1| transcription termination factor Rho [Thermobaculum terrenum ATCC
BAA-798]
gi|269790105|gb|ACZ42246.1| transcription termination factor Rho [Thermobaculum terrenum ATCC
BAA-798]
Length = 642
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
G+GF+ E S DDV++ +S + GL G V
Sbjct: 288 GFGFLRQERYLPSPDDVYVSQSQIRRFGLRT---GDHV 322
>gi|39996585|ref|NP_952536.1| ribonuclease R [Geobacter sulfurreducens PCA]
gi|39983466|gb|AAR34859.1| ribonuclease R, putative [Geobacter sulfurreducens PCA]
gi|307634851|gb|ADI84324.2| exoribonuclease R [Geobacter sulfurreducens KN400]
Length = 763
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
GYGF+ PEG GDDV++ + G +V GK ++ +
Sbjct: 78 GYGFVVPEG---GGDDVYVPARYLGGNLH-----GDVVEVRVESFKRGGKKEGRIIRTIE 129
Query: 75 KS 76
+
Sbjct: 130 RG 131
>gi|89898573|ref|YP_515683.1| ribonuclease R [Chlamydophila felis Fe/C-56]
gi|89331945|dbj|BAE81538.1| ribonuclease R [Chlamydophila felis Fe/C-56]
Length = 676
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY----VQNDANGK 64
KG+GF+TP+ E D+F+ + A +G V + +
Sbjct: 29 AKKGFGFVTPDHPEEYPFDIFIPARDLKGA-----LDGDHVIVSLFPHSKEGEKRKG 80
>gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
Length = 755
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENL 70
KG+GF+ PE E DVF+ + + A G ++ ++ K E +
Sbjct: 99 HSKGFGFLIPE--EEGQKDVFIPSNCINGA-----MNGDKISVRVTREDTKTKKREGEVV 151
Query: 71 KLVPK 75
+++ +
Sbjct: 152 EIIER 156
>gi|257867214|ref|ZP_05646867.1| transcription termination factor Rho [Enterococcus casseliflavus
EC30]
gi|257873549|ref|ZP_05653202.1| transcription termination factor Rho [Enterococcus casseliflavus
EC10]
gi|257877323|ref|ZP_05656976.1| transcription termination factor Rho [Enterococcus casseliflavus
EC20]
gi|257801270|gb|EEV30200.1| transcription termination factor Rho [Enterococcus casseliflavus
EC30]
gi|257807713|gb|EEV36535.1| transcription termination factor Rho [Enterococcus casseliflavus
EC10]
gi|257811489|gb|EEV40309.1| transcription termination factor Rho [Enterococcus casseliflavus
EC20]
Length = 431
Score = 34.3 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + +L G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRF---SLRNGDKV 100
>gi|154503018|ref|ZP_02040078.1| hypothetical protein RUMGNA_00840 [Ruminococcus gnavus ATCC 29149]
gi|153796372|gb|EDN78792.1| hypothetical protein RUMGNA_00840 [Ruminococcus gnavus ATCC 29149]
Length = 713
Score = 34.3 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
+G+GF+ E +DVF+ + A +G V + ++ + + +++V
Sbjct: 87 RGFGFVLREDE----EDVFIPEENINGA-----FQGDEVEFLITKSPEGRRKEGKIVRVV 137
Query: 74 PKSS 77
+
Sbjct: 138 SHGT 141
>gi|328956663|ref|YP_004374049.1| transcription termination factor Rho [Carnobacterium sp. 17-4]
gi|328672987|gb|AEB29033.1| transcription termination factor Rho [Carnobacterium sp. 17-4]
Length = 431
Score = 33.9 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
+GF+ P T S +D+++ S + GL N G V+
Sbjct: 67 FGFLRPINYTPSKEDIYISSSQIKRFGLRN---GDKVS 101
>gi|325568650|ref|ZP_08144943.1| transcription termination factor Rho [Enterococcus casseliflavus
ATCC 12755]
gi|325157688|gb|EGC69844.1| transcription termination factor Rho [Enterococcus casseliflavus
ATCC 12755]
Length = 431
Score = 33.9 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + +L G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIRRF---SLRNGDKV 100
>gi|227499726|ref|ZP_03929826.1| ribonuclease R [Anaerococcus tetradius ATCC 35098]
gi|227218193|gb|EEI83456.1| ribonuclease R [Anaerococcus tetradius ATCC 35098]
Length = 708
Score = 33.9 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
Y +KG+GF+ P+ + D ++++ + V + + NGK +
Sbjct: 142 YQKNKGFGFVIPDDRSFGDDIFIGEKNSLRAKNK------DKVVVEIIDYPKNGKPEGKI 195
Query: 70 LKLV 73
++++
Sbjct: 196 IEII 199
>gi|289551358|ref|YP_003472262.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis
HKU09-01]
gi|289180889|gb|ADC88134.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis
HKU09-01]
Length = 791
Score = 33.9 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
KG+GF+ PE +D+F+ + + A +G V + Q+ + K
Sbjct: 80 NKKGFGFLRPENDDM--EDIFIPPTKINRA-----LDGDTVIVEVKQSKGDHK 125
>gi|241764014|ref|ZP_04762054.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
gi|330825270|ref|YP_004388573.1| Copper binding periplasmic protein CusF [Alicycliphilus
denitrificans K601]
gi|241366688|gb|EER61153.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
gi|329310642|gb|AEB85057.1| Copper binding periplasmic protein CusF [Alicycliphilus
denitrificans K601]
Length = 115
Score = 33.9 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDV--FLHRSAVASAG-LFNLTEGQLVTYDYVQ 58
+ G +K + D G IT + D+ AV G L NL G V + VQ
Sbjct: 44 MTDGEVKKVDLDNGK--ITLKHGDIKNLDMPGMTMVFAVRDKGQLTNLKPGDKVQFMVVQ 101
Query: 59 NDANGKYSAENLKLV 73
GK +++ V
Sbjct: 102 E--GGKMIVTDIQPV 114
>gi|255280022|ref|ZP_05344577.1| transcription termination factor Rho [Bryantella formatexigens DSM
14469]
gi|255269113|gb|EET62318.1| transcription termination factor Rho [Bryantella formatexigens DSM
14469]
Length = 482
Score = 33.9 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
GYGFI +DV++ S + GL
Sbjct: 123 GYGFIRSNNYLPGENDVYVSPSQIRRFGLKT 153
>gi|148244775|ref|YP_001219469.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
gi|146326602|dbj|BAF61745.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
Length = 105
Score = 33.9 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
+G++ + KGYGFI + G+ F+H+ + + L V ++ ++
Sbjct: 6 QGTVAQF-GTKGYGFIMGDD----GEKYFVHQKNIFNK--SRLKVNTRVVFNTQNSEKGW 58
Query: 64 KYSAENLKLVPKSSN 78
NL+ K+ N
Sbjct: 59 VAMDVNLEKSIKTPN 73
>gi|153814373|ref|ZP_01967041.1| hypothetical protein RUMTOR_00583 [Ruminococcus torques ATCC 27756]
gi|317500087|ref|ZP_07958322.1| transcription termination factor Rho [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087689|ref|ZP_08336615.1| transcription termination factor Rho [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848769|gb|EDK25687.1| hypothetical protein RUMTOR_00583 [Ruminococcus torques ATCC 27756]
gi|316898572|gb|EFV20608.1| transcription termination factor Rho [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409670|gb|EGG89106.1| transcription termination factor Rho [Lachnospiraceae bacterium
3_1_46FAA]
Length = 473
Score = 33.9 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
G+GFI + +DV++ + + GL
Sbjct: 114 GFGFIRSDNYLPGENDVYVSPAQIRRFGLKT 144
>gi|315658865|ref|ZP_07911732.1| ribonuclease R [Staphylococcus lugdunensis M23590]
gi|315495989|gb|EFU84317.1| ribonuclease R [Staphylococcus lugdunensis M23590]
Length = 799
Score = 33.9 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
KG+GF+ PE +D+F+ + + A +G V + Q+ + K
Sbjct: 88 NKKGFGFLRPENDDM--EDIFIPPTKINRA-----LDGDTVIVEVKQSKGDHK 133
>gi|315641398|ref|ZP_07896472.1| transcription termination factor rho [Enterococcus italicus DSM
15952]
gi|315482834|gb|EFU73356.1| transcription termination factor rho [Enterococcus italicus DSM
15952]
Length = 430
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
GYGF+ P S +D+++ S + GL N G V
Sbjct: 66 GYGFLRPINYGPSAEDIYISSSQIYRFGLRN---GDKV 100
>gi|160938227|ref|ZP_02085582.1| hypothetical protein CLOBOL_03123 [Clostridium bolteae ATCC
BAA-613]
gi|158438600|gb|EDP16357.1| hypothetical protein CLOBOL_03123 [Clostridium bolteae ATCC
BAA-613]
Length = 748
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE--NLK 71
KG+GF+T EG DVF+ +A G V D G AE LK
Sbjct: 82 KGFGFVTVEGME---QDVFIPEDRTGAALH-----GDRVQIVVESQDRGGGRRAEGSVLK 133
Query: 72 LVPKS 76
++ +
Sbjct: 134 VLEHA 138
>gi|291527970|emb|CBK93556.1| transcription termination factor Rho [Eubacterium rectale M104/1]
Length = 446
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
G+GFI + D+++ + + L G +V + K+ A
Sbjct: 87 GFGFIRCDNYMPGDHDIYVAPAQIRRFNLKT---GDIVKGNMKVKSEREKFQA 136
>gi|291524544|emb|CBK90131.1| transcription termination factor Rho [Eubacterium rectale DSM
17629]
Length = 446
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
G+GFI + D+++ + + L G +V + K+ A
Sbjct: 87 GFGFIRCDNYMPGDHDIYVAPAQIRRFNLKT---GDIVKGNMKVKSEREKFQA 136
>gi|238923856|ref|YP_002937372.1| transcription termination factor Rho [Eubacterium rectale ATCC
33656]
gi|238875531|gb|ACR75238.1| transcription termination factor Rho [Eubacterium rectale ATCC
33656]
Length = 446
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
G+GFI + D+++ + + L G +V + K+ A
Sbjct: 87 GFGFIRCDNYMPGDHDIYVAPAQIRRFNLKT---GDIVKGNMKVKSEREKFQA 136
>gi|195997971|ref|XP_002108854.1| hypothetical protein TRIADDRAFT_52268 [Trichoplax adhaerens]
gi|190589630|gb|EDV29652.1| hypothetical protein TRIADDRAFT_52268 [Trichoplax adhaerens]
Length = 693
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
+ + + ++ S++ ++ + L + + V + N GK A N++ V +
Sbjct: 520 SVDSGQTTTNNYSFLSSSMITSKV-VLQDNEKVKFQLATNPQTGKVRAVNVEPVRQ 574
>gi|321249678|ref|XP_003191534.1| hypothetical protein CGB_A5180C [Cryptococcus gattii WM276]
gi|317458001|gb|ADV19747.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 443
Score = 33.9 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 42 GLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
G+ L EG V + K++AEN+ L+ +
Sbjct: 267 GVAELFEGDEVE----AIEKGKKWAAENVSLIEGAG 298
>gi|149911293|ref|ZP_01899914.1| cold shock domain family protein [Moritella sp. PE36]
gi|149805608|gb|EDM65610.1| cold shock domain family protein [Moritella sp. PE36]
Length = 220
Score = 33.9 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDAN 62
+G I Y K +GFI + G+ FLH S+ + A L + +V ++
Sbjct: 2 KGKIISYISAKKFGFICGDD----GESYFLHVSSLLDKANESKLVKDVVVEFEPTTTPKG 57
Query: 63 GKYSAENLKL 72
+A+ + +
Sbjct: 58 --LAAKQVHV 65
>gi|261414726|ref|YP_003248409.1| guanine-specific ribonuclease N1 and T1 [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371182|gb|ACX73927.1| guanine-specific ribonuclease N1 and T1 [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 249
Score = 33.9 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59
+ ++ ++ +N +KG+GF T +G F+H SA+ + G + Y++ +
Sbjct: 3 ITNKATVTQWNEEKGFGFATA-----NGTKYFVHISAL-GHPVRPPKVGDTIIIYNFGKT 56
Query: 60 DANGK 64
+ +
Sbjct: 57 EKGAR 61
>gi|56965637|ref|YP_177371.1| transcription termination factor Rho [Bacillus clausii KSM-K16]
gi|56911883|dbj|BAD66410.1| transcriptional termination factor Rho [Bacillus clausii KSM-K16]
Length = 422
Score = 33.9 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
G+GF+ P S +D+++ S + +L G V+
Sbjct: 64 GFGFLRPINYLPSTEDIYISASQIRRF---DLRNGDKVS 99
>gi|238917370|ref|YP_002930887.1| transcription termination factor Rho [Eubacterium eligens ATCC
27750]
gi|238872730|gb|ACR72440.1| transcription termination factor Rho [Eubacterium eligens ATCC
27750]
Length = 485
Score = 33.9 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
GYGFI E +DV++ S + L G D +Q K S
Sbjct: 126 GYGFIRCENFLPGENDVYVSPSQIRKFNLKT---G-----DIIQGPKRMKTS 169
>gi|109020247|ref|XP_001090953.1| PREDICTED: protein lin-28 homolog A-like, partial [Macaca
mulatta]
Length = 81
Score = 33.9 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 5 GSIKWYNPDKGYGFIT 20
G KW+N G+GF++
Sbjct: 42 GICKWFNVRMGFGFLS 57
>gi|331088240|ref|ZP_08337159.1| ribonuclease R [Lachnospiraceae bacterium 3_1_46FAA]
gi|330408484|gb|EGG87950.1| ribonuclease R [Lachnospiraceae bacterium 3_1_46FAA]
Length = 735
Score = 33.9 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
+G+GF+TPE DD+F+ + +A +G V Y A +
Sbjct: 111 NARGFGFVTPED---GTDDIFIPEECLGNA-----FQGDEVEYIITSAPAGKR 155
>gi|166032750|ref|ZP_02235579.1| hypothetical protein DORFOR_02465 [Dorea formicigenerans ATCC
27755]
gi|166027107|gb|EDR45864.1| hypothetical protein DORFOR_02465 [Dorea formicigenerans ATCC
27755]
Length = 450
Score = 33.9 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
G+GFI + +D+++ S + L
Sbjct: 91 GFGFIRSDNYLPGDNDIYISPSQIRRFNLKT 121
>gi|153813799|ref|ZP_01966467.1| hypothetical protein RUMTOR_00005 [Ruminococcus torques ATCC 27756]
gi|317501944|ref|ZP_07960128.1| ribonuclease R [Lachnospiraceae bacterium 8_1_57FAA]
gi|145848195|gb|EDK25113.1| hypothetical protein RUMTOR_00005 [Ruminococcus torques ATCC 27756]
gi|316896624|gb|EFV18711.1| ribonuclease R [Lachnospiraceae bacterium 8_1_57FAA]
Length = 735
Score = 33.9 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
+G+GF+TPE DD+F+ + +A +G V Y A +
Sbjct: 111 NARGFGFVTPED---GTDDIFIPEECLGNA-----FQGDEVEYIITSAPAGKR 155
>gi|291562234|emb|CBL41050.1| transcription termination factor Rho [butyrate-producing bacterium
SS3/4]
Length = 607
Score = 33.9 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
G+GFI E +DV++ S + +
Sbjct: 246 GFGFIRCENFLPGDNDVYVAPSQIRRFNMKT 276
>gi|329770171|ref|ZP_08261562.1| transcription termination factor Rho [Gemella sanguinis M325]
gi|328837072|gb|EGF86714.1| transcription termination factor Rho [Gemella sanguinis M325]
Length = 422
Score = 33.9 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
P+ G+GF+ + D+++ S + L +G V+ + +Y+
Sbjct: 64 PENGFGFLRTVDYKKGETDIYISASQIRRF---ELKKGDEVSGKVRKPREGERYA 115
>gi|283798444|ref|ZP_06347597.1| transcription termination factor Rho [Clostridium sp. M62/1]
gi|291073849|gb|EFE11213.1| transcription termination factor Rho [Clostridium sp. M62/1]
gi|295090772|emb|CBK76879.1| transcription termination factor Rho [Clostridium cf.
saccharolyticum K10]
Length = 628
Score = 33.9 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
G+GFI E +DV++ S + L G +V
Sbjct: 268 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---GDIV 302
>gi|323486281|ref|ZP_08091607.1| hypothetical protein HMPREF9474_03358 [Clostridium symbiosum
WAL-14163]
gi|323693928|ref|ZP_08108115.1| transcription termination factor Rho [Clostridium symbiosum
WAL-14673]
gi|323400391|gb|EGA92763.1| hypothetical protein HMPREF9474_03358 [Clostridium symbiosum
WAL-14163]
gi|323502025|gb|EGB17900.1| transcription termination factor Rho [Clostridium symbiosum
WAL-14673]
Length = 605
Score = 33.5 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
G+GFI E +DV++ S + L G D V+ K +
Sbjct: 244 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIVRGSRRVKTA 287
>gi|47180716|emb|CAG14531.1| unnamed protein product [Tetraodon nigroviridis]
Length = 66
Score = 33.5 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
+ +S + G +L EG+ V + + ++
Sbjct: 1 IVFQSKLHMEGFRSLKEGEEVEFTFKKSLKG 31
>gi|47563677|dbj|BAD20295.1| cold shock protein like [Pseudomonas fluorescens]
Length = 18
Score = 33.5 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 2 VHRGSIKWYNPDKGY 16
G++KW+N +KG+
Sbjct: 4 RQTGTVKWFNDEKGF 18
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.177 0.644
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,031,990,920
Number of Sequences: 14124377
Number of extensions: 39310731
Number of successful extensions: 104481
Number of sequences better than 10.0: 5690
Number of HSP's better than 10.0 without gapping: 5030
Number of HSP's successfully gapped in prelim test: 660
Number of HSP's that attempted gapping in prelim test: 92871
Number of HSP's gapped (non-prelim): 6748
length of query: 78
length of database: 4,842,793,630
effective HSP length: 49
effective length of query: 29
effective length of database: 4,150,699,157
effective search space: 120370275553
effective search space used: 120370275553
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 77 (33.9 bits)