RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus
Liberibacter asiaticus str. psy62]
         (78 letters)



>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga
          maritima [TaxId: 2336]}
          Length = 66

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT +     G DVF+H SA+   G   L EGQ+V ++  +     
Sbjct: 2  RGKVKWFDSKKGYGFITKDE----GGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGK--K 55

Query: 64 KYSAENLKLV 73
             A ++K+V
Sbjct: 56 GPQAAHVKVV 65


>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli
          [TaxId: 562]}
          Length = 69

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+       DVF+H SA+ + G  +L EGQ V++         
Sbjct: 5  TGIVKWFNADKGFGFITPDD---GSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGA--K 59

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 60 GPAAGNVT 67


>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
          caldolyticus [TaxId: 1394]}
          Length = 66

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N +KGYGFI  EG      DVF+H +A+   G   L EGQ V+++ VQ +  G
Sbjct: 3  RGKVKWFNNEKGYGFIEVEGG----SDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN-RG 57

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 58 PQAANVVKL 66


>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 79

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 10 LGTVKWFNVRNGYGFINRN---DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 66

Query: 60 DANGKYSAENL 70
          +      A N+
Sbjct: 67 E--KGAEAANV 75


>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G I+       YGFI      E    +F H S      L +L  G  V ++   +   
Sbjct: 19 ETGVIEKLL--TSYGFIQCS---ERQARLFFHCSQYNG-NLQDLKVGDDVEFEVSSDRRT 72

Query: 63 GKYSAENLKLVP 74
          GK  A  L  + 
Sbjct: 73 GKPIAVKLVKIS 84


>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 79

 Score = 25.1 bits (55), Expect = 1.8
 Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 4/29 (13%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASA 41
          +KG+GF+  +         F+    +   
Sbjct: 27 EKGFGFLEVDA----QKSYFIPPPQMKKV 51


>d1zrua1 b.21.1.3 (A:162-264) receptor binding protein, rbp,
          C-terminal domain {Lactococcus lactis phage p2 [TaxId:
          100641]}
          Length = 103

 Score = 24.1 bits (52), Expect = 3.1
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 3  HRGSIKWYNPDKGYGFITPEGS 24
            GSI W+  +     I   G+
Sbjct: 76 PNGSITWWGANIDKTPIATRGN 97


>d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal
          domain {Lactococcus phage tp901-1 [TaxId: 35345]}
          Length = 101

 Score = 22.5 bits (48), Expect = 9.7
 Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 2/21 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEG 23
            G  +W+ P    G  TP G
Sbjct: 76 SSGVCQWFGPTASSG--TPRG 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,323
Number of extensions: 9519
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 9
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)