Query         gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 408
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 22:05:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780914.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1mf7_A Integrin alpha M; cell   63.3     7.1  0.0003   17.9   5.4   50  345-394   136-190 (194)
  2 2b2x_A Integrin alpha-1; compu  48.6      12 0.00051   16.2   8.7   78  303-394   125-212 (223)
  3 1pt6_A Integrin alpha-1; X-RAY  44.6      14 0.00058   15.8   7.7   77  303-393   110-196 (213)
  4 1shu_X Anthrax toxin receptor   43.6      14 0.00061   15.7   7.8   77  301-391   102-179 (182)
  5 3gxb_A VON willebrand factor;   41.3      16 0.00065   15.5   4.9   49  344-394   127-175 (184)
  6 1v7p_C Integrin alpha-2; snake  35.6      19 0.00079   14.9   4.3   51  344-394   136-196 (200)
  7 3kp1_E D-ornithine aminomutase  27.5      12 0.00051   16.2   0.3   38   34-78     65-102 (121)
  8 1n3y_A Integrin alpha-X; alpha  26.7      26  0.0011   13.8   5.2   78  303-393   111-193 (198)
  9 3kmp_A SMAD1-MH1; protein-DNA   24.5      14 0.00059   15.8   0.2   12  223-234   111-122 (124)
 10 1ozj_A SMAD 3; MAD homology do  23.9      15 0.00064   15.5   0.3   16  220-235   116-131 (144)
 11 1v9v_A KIAA0561 protein; helix  23.6      30  0.0012   13.5   2.1   39   49-88     10-49  (114)
 12 1rrk_A Complement factor B; BB  22.9      31  0.0013   13.3   5.3   11  190-200   249-259 (497)
 13 2v6z_M DNA polymerase epsilon   22.5      30  0.0013   13.4   1.6   18  315-332    81-98  (99)

No 1  
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=63.30  E-value=7.1  Score=17.86  Aligned_cols=50  Identities=20%  Similarity=0.406  Sum_probs=36.3

Q ss_pred             EEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH
Q ss_conf             168997404887420---2678763059032--0442587653447898777778
Q gi|254780914|r  345 AITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       345 aitifsvgfspdqdt---rytlrqcasdpsk--yyeinsdenvmpiakslarnvi  394 (408)
                      .|++|.||+..+-..   .-.|+.+|++|+.  .|.+.+-+..-.+.+.+++...
T Consensus       136 gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~  190 (194)
T 1mf7_A          136 GVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF  190 (194)
T ss_dssp             TEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             9999999978876663469999998669986608994999999999999987641


No 2  
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=48.59  E-value=12  Score=16.22  Aligned_cols=78  Identities=22%  Similarity=0.522  Sum_probs=49.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH--------HHHHHHCCCCHH--
Q ss_conf             7079999734510033302899999999859988751147641689974048874202--------678763059032--
Q gi|254780914|r  303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR--------YTLRQCASDPSK--  372 (408)
Q Consensus       303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtr--------ytlrqcasdpsk--  372 (408)
                      .|.++++.-|.  +..   ...++.+.+...         ...|+||.||..++-+..        -.|++-||+|+.  
T Consensus       125 ~kvlillTDG~--~~d---~~~~~~~a~~lk---------~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~  190 (223)
T 2b2x_A          125 KKVMVIVTDGE--SHD---NYRLKQVIQDCE---------DENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKH  190 (223)
T ss_dssp             EEEEEEEESSC--CTT---GGGHHHHHHHHH---------TTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGT
T ss_pred             CEEEEEEECCC--CCC---CHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf             25799982698--788---312999999998---------7599899999846666443244236999999866998551


Q ss_pred             EEEECCCCCHHHHHHHHHHHHH
Q ss_conf             0442587653447898777778
Q gi|254780914|r  373 YYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       373 yyeinsdenvmpiakslarnvi  394 (408)
                      .|.+.+-+....+.+.|+..+.
T Consensus       191 ~f~~~d~~~L~~i~~~l~~~ic  212 (223)
T 2b2x_A          191 FFNVSDELALVTIVKALGERIF  212 (223)
T ss_dssp             EEEESSTTGGGGGHHHHHTTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHC
T ss_conf             8981899999999999998864


No 3  
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=44.59  E-value=14  Score=15.80  Aligned_cols=77  Identities=22%  Similarity=0.534  Sum_probs=48.9

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH--------HHHHHHHCCCCHH--
Q ss_conf             707999973451003330289999999985998875114764168997404887420--------2678763059032--
Q gi|254780914|r  303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDT--------RYTLRQCASDPSK--  372 (408)
Q Consensus       303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdt--------rytlrqcasdpsk--  372 (408)
                      .|.++++.=|.-  ..   ...++...+...         ...|++|.||..++-+.        .-.|+..||+|+.  
T Consensus       110 ~k~villTDG~~--~d---~~~~~~~~~~lk---------~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~  175 (213)
T 1pt6_A          110 KKVMVIVTDGES--HD---NHRLKKVIQDCE---------DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKH  175 (213)
T ss_dssp             EEEEEEEESSCC--SC---SHHHHHHHHHHH---------HTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHH
T ss_pred             EEEEEEEECCCC--CC---CHHHHHHHHHHH---------HCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCE
T ss_conf             689999846987--88---415999999999---------8899999999747655454333246999999866998540


Q ss_pred             EEEECCCCCHHHHHHHHHHHH
Q ss_conf             044258765344789877777
Q gi|254780914|r  373 YYEINSDENVMPIAKSLARNV  393 (408)
Q Consensus       373 yyeinsdenvmpiakslarnv  393 (408)
                      +|.+.+.+....|.+.|...+
T Consensus       176 ~f~~~~~~~L~~i~~~l~~~i  196 (213)
T 1pt6_A          176 FFNVSDELALVTIVKTLGERI  196 (213)
T ss_dssp             EEEESSGGGGGGGHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHHH
T ss_conf             898089999999999999997


No 4  
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=43.55  E-value=14  Score=15.69  Aligned_cols=77  Identities=14%  Similarity=0.200  Sum_probs=42.3

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCC-
Q ss_conf             6770799997345100333028999999998599887511476416899740488742026787630590320442587-
Q gi|254780914|r  301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSD-  379 (408)
Q Consensus       301 sqnkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtrytlrqcasdpskyyeinsd-  379 (408)
                      ..++.++++.-|..-+..+...++..+.      +++      ..|.+|.||+... | .-.|++.|++|...|...++ 
T Consensus       102 ~~~~~ivllTDG~~~~~~~~~~~~~a~~------l~~------~gv~v~~Vgig~~-~-~~~L~~ia~~~~~~~~~~~~~  167 (182)
T 1shu_X          102 KTSSIIIALTDGKLDGLVPSYAEKEAKI------SRS------LGASVYCVGVLDF-E-QAQLERIADSKEQVFPVKGGF  167 (182)
T ss_dssp             GSCEEEEEEECCCCCTTHHHHHHHHHHH------HHH------TTCEEEEEECSSC-C-HHHHHHHSSSGGGEEESSSTT
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHH------HHH------CCCEEEEEEECCC-C-HHHHHHHHCCCCCEEEECCCH
T ss_conf             8855999997288788864899999999------997------8999999984754-8-999999858999669934999


Q ss_pred             CCHHHHHHHHHH
Q ss_conf             653447898777
Q gi|254780914|r  380 ENVMPIAKSLAR  391 (408)
Q Consensus       380 envmpiakslar  391 (408)
                      +..-.+.+.+++
T Consensus       168 ~~L~~~~~~i~~  179 (182)
T 1shu_X          168 QALKGIINSILA  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999986


No 5  
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=41.27  E-value=16  Score=15.45  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             416899740488742026787630590320442587653447898777778
Q gi|254780914|r  344 DAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       344 daitifsvgfspdqdtrytlrqcasdpskyyeinsdenvmpiakslarnvi  394 (408)
                      ..|+||.||..++-|.. .|+..|+ |++++.+++-+..-.+...+...+.
T Consensus       127 ~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c  175 (184)
T 3gxb_A          127 GDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC  175 (184)
T ss_dssp             TTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             89989999846747999-9998739-9977994899999999999997546


No 6  
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=35.60  E-value=19  Score=14.85  Aligned_cols=51  Identities=16%  Similarity=0.347  Sum_probs=35.5

Q ss_pred             CEEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH
Q ss_conf             4168997404887420--------2678763059032--0442587653447898777778
Q gi|254780914|r  344 DAITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI  394 (408)
Q Consensus       344 daitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnvi  394 (408)
                      ..|.+|.||..+..+.        .-.|+..||+|+.  .|.+.+-+....+.+.|++.+.
T Consensus       136 ~gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic  196 (200)
T 1v7p_C          136 DNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF  196 (200)
T ss_dssp             TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             8909999997774455654431259999998669986139993899999999999997720


No 7  
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=27.54  E-value=12  Score=16.21  Aligned_cols=38  Identities=37%  Similarity=0.575  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH
Q ss_conf             999999876677776667899998776520683323667741223
Q gi|254780914|r   34 VAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD   78 (408)
Q Consensus        34 vaivdvvvdqvtvmqktawlqevldhviyrtspknlydlreagrd   78 (408)
                      -+||+-|++. ..|.|-|      .|+.||-+.+.--++||||+.
T Consensus        65 k~iVe~v~~~-gLlgKGA------GhvV~k~ak~~~i~i~eAG~~  102 (121)
T 3kp1_E           65 KAIVDKTMDR-GLMGKGA------GHIVYKIAKEKNISVREAGLA  102 (121)
T ss_dssp             HHHHHHHHHT-TCGGGCH------HHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHH-CCCCCCC------CHHHHHHHHHCCCCHHHHHHH
T ss_conf             9999999980-5445775------532235797629988999999


No 8  
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=26.70  E-value=26  Score=13.84  Aligned_cols=78  Identities=17%  Similarity=0.322  Sum_probs=43.0

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEEC
Q ss_conf             707999973451003330289999999985998875114764168997404887420---2678763059032--04425
Q gi|254780914|r  303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEIN  377 (408)
Q Consensus       303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdt---rytlrqcasdpsk--yyein  377 (408)
                      .|.++++.-|..- .+..+-+.   +.+.+.         .-.+.+|.+|..++.+.   .-.|+..|+.|+.  ++.++
T Consensus       111 ~kvivlltDG~~~-~~~~~~~~---~~~~~~---------~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~  177 (198)
T 1n3y_A          111 AKILIVITDGKKE-GDSLDYKD---VIPMAD---------AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE  177 (198)
T ss_dssp             EEEEEEEESSCCB-SCSSCHHH---HHHHHH---------HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES
T ss_pred             CCEEEEEECCCCC-CCCCCHHH---HHHHHH---------HCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEC
T ss_conf             4259999358988-87205999---999999---------7898899999787667753499999986699865199929


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             8765344789877777
Q gi|254780914|r  378 SDENVMPIAKSLARNV  393 (408)
Q Consensus       378 sdenvmpiakslarnv  393 (408)
                      +-+..-.+.+.+.+.+
T Consensus       178 ~~~~L~~i~~~l~~~i  193 (198)
T 1n3y_A          178 DFDALKDIQNQLKEKI  193 (198)
T ss_dssp             SGGGGGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9999999999999873


No 9  
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus}
Probab=24.50  E-value=14  Score=15.75  Aligned_cols=12  Identities=42%  Similarity=1.301  Sum_probs=10.0

Q ss_pred             CEECCCCHHHHH
Q ss_conf             200272023443
Q gi|254780914|r  223 NFCMAPYHYSSI  234 (408)
Q Consensus       223 nfcmapyhyssi  234 (408)
                      ..|.-|||||-|
T Consensus       111 ~VC~NPyHy~Rv  122 (124)
T 3kmp_A          111 EVCINPYHYKRV  122 (124)
T ss_dssp             EEECCGGGEEEC
T ss_pred             CEEECCCCHHHC
T ss_conf             288687226540


No 10 
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=23.87  E-value=15  Score=15.50  Aligned_cols=16  Identities=31%  Similarity=0.856  Sum_probs=11.8

Q ss_pred             CCCCEECCCCHHHHHH
Q ss_conf             7432002720234434
Q gi|254780914|r  220 PYKNFCMAPYHYSSIL  235 (408)
Q Consensus       220 pyknfcmapyhyssil  235 (408)
                      -+...|.-||||+-+-
T Consensus       116 ~~~~VC~NPYHy~Rv~  131 (144)
T 1ozj_A          116 KKDEVCVNPYHYQRVE  131 (144)
T ss_dssp             CCSEEECCGGGEEECC
T ss_pred             CCCEEEECCCHHHHCC
T ss_conf             9981883840263412


No 11 
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=23.63  E-value=30  Score=13.45  Aligned_cols=39  Identities=33%  Similarity=0.381  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH
Q ss_conf             6678999987765206833236677412235789999-987
Q gi|254780914|r   49 KTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA   88 (408)
Q Consensus        49 ktawlqevldhviyrtspknlydlreagrdnfirhqi-eka   88 (408)
                      .||-..|-|.+.|-.-+|.+...+. .|--+|+.||| |-|
T Consensus        10 AtaQMEerL~~fi~~~~~~~~~~la-Dgvl~FvhHQiiElA   49 (114)
T 1v9v_A           10 ATAQMEGRLQEFLTAYAPGARLALA-DGVLGFIHHQIVELA   49 (114)
T ss_dssp             TTHHHHHHHHHHHHHSCBTTTBCCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHH
T ss_conf             1899999999999976962344113-889999999999999


No 12 
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=22.87  E-value=31  Score=13.35  Aligned_cols=11  Identities=27%  Similarity=0.123  Sum_probs=3.6

Q ss_pred             CCCCHHCCHHH
Q ss_conf             38710102778
Q gi|254780914|r  190 VHPPKYLEYSH  200 (408)
Q Consensus       190 vhppkyleysh  200 (408)
                      ++|---|--.|
T Consensus       249 Is~~~VLTAAh  259 (497)
T 1rrk_A          249 VSEYFVLTAAH  259 (497)
T ss_dssp             CSSSEEEECGG
T ss_pred             EECCEEEECCE
T ss_conf             74999996912


No 13 
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=22.51  E-value=30  Score=13.40  Aligned_cols=18  Identities=28%  Similarity=0.503  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             003330289999999985
Q gi|254780914|r  315 LSRSSVEKEKIEKVLQDC  332 (408)
Q Consensus       315 lsrssvekekiekvlqdc  332 (408)
                      |+-+-||++-||+.+|+|
T Consensus        81 LsS~~Iek~~iE~AVkEC   98 (99)
T 2v6z_M           81 LSSNMIERSVVEAAVQES   98 (99)
T ss_dssp             CSSSEECHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHC
T ss_conf             980151399999999863


Done!