BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780914|ref|YP_003065327.1| hypothetical protein
CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62]
(408 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040591|gb|ACT57387.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040606|gb|ACT57402.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040684|gb|ACT57480.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/408 (99%), Positives = 407/408 (99%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039812|gb|ACT56608.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/408 (91%), Positives = 381/408 (93%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA
Sbjct: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Y DN ++D Y TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|315122409|ref|YP_004062898.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495811|gb|ADR52410.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 411
Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 221/416 (53%), Gaps = 21/416 (5%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MF +NFL RL CT G FL+++A+LLSSF+ I+D++ D +++ LQ +D+
Sbjct: 1 MFYYRNFLSVFSRLNHCTNGSFLIVSAVLLSSFLTIMDIMRDYTDMIRVRNMLQSSIDYA 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
++ +P L R+ I+ +I L++ L I+ IV + + +
Sbjct: 61 LH-NNPNELSVGTIKQREMLIKKRIGYFLDSNYKGTLLTEEQIKLIVNQSTVSITERSFY 119
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
P QF ++I L +QL+ +L M K +IS+RK +YK+N+ LM++PF W G W+
Sbjct: 120 PQQFHINIELHKNIQLKSLILHMAMNPKKDFNISQRKSSLYKKNVALMVVPFTWTGEWIP 179
Query: 181 SR---GKVADSKVHPPKYLEYSHYYQ-QYLN-RNTLVKNFLSQIPYKNFCMAPYHYSSIL 235
+ S+ P L+ H+ + +Y N RN K FLS+I N C+APYHYS+I+
Sbjct: 180 PSLFTTQFTVSQDLLPSDLKTEHFKKTEYFNKRNQFFKMFLSKIKENNLCIAPYHYSAIV 239
Query: 236 YWAVGTLTYSVDNKTT----TREYYKDPYYATWDHFPYSFIKNVF---DMTSNQFGDGQV 288
YW+ G +Y + TT R+ Y Y WD P ++I ++F ++ SN+
Sbjct: 240 YWSEGIFSYKLPFSTTFLYSFRDIYVKQYSTIWDMKPSNYILDLFAGAELHSNR------ 293
Query: 289 LTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-RTGRDAIT 347
LT + CF G Q K+ML++A GNQ+S E K+ C M K + ++ IT
Sbjct: 294 LTPADPCFRRGVIQKKFMLIIAAGNQISDRKNSAEYF-KMKHGCTLMGKNMGKNPQEEIT 352
Query: 348 IFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTI 403
++S+G SPD DT+ L QC P +YYEI S +++ P+ L RN+ + W F+I
Sbjct: 353 VYSLGISPDPDTKRDLIQCTRHPDRYYEIQSYKDIAPVIDRLERNISSVWNDGFSI 408
>gi|294875617|ref|XP_002767406.1| synaptojanin, putative [Perkinsus marinus ATCC 50983]
gi|239868969|gb|EER00124.1| synaptojanin, putative [Perkinsus marinus ATCC 50983]
Length = 805
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 27/127 (21%)
Query: 62 YRTSPKNLYDLREA---GRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVN 118
Y +SP L D +A GR + +R A YN R L ++G + + V+ ++L
Sbjct: 242 YISSPTPLSDYLDAILIGRRSCLR-----AGTRYNHRGLDDLGDVANFVETELLLCNR-- 294
Query: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKG------KVDISRRKKVM---YKQNIGLMI 169
D+ L+ +Q+RGS+ +SQ+ G ++DI+R K++ Y ++I +I
Sbjct: 295 --------DVVLAAHIQIRGSVPVFWSQNPGSNSSTQQLDITRSKEMTVLGYDKHISSLI 346
Query: 170 MPFAWDG 176
+ DG
Sbjct: 347 KRYGPDG 353
>gi|197386168|ref|NP_001127975.1| calmodulin regulated spectrin-associated protein 1-like 1 [Rattus
norvegicus]
gi|149058504|gb|EDM09661.1| similar to KIAA1078 protein (predicted) [Rattus norvegicus]
Length = 1470
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 268 PYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEK 327
P+ +K+ +++N+ + NT+H P+GA QN+ +L+ GNQ +E IE+
Sbjct: 488 PHGDLKSYMPLSTNELNSNE---NTHHKLPNGALQNR-VLLDEFGNQ-----IETPSIEE 538
Query: 328 VLQDCHYMHKRHRTGR 343
LQ H K T R
Sbjct: 539 ALQIIHDTEKPPHTAR 554
>gi|90420284|ref|ZP_01228192.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90335618|gb|EAS49368.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 593
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 314 QLSRSSVEKEKIEKVLQDCHYMHK--RHRTGRDAITIFSVGFSPDQDT--RYTLRQCAS- 368
+ +RSS EKV C + R TG D I IF++ F + + + + QCAS
Sbjct: 497 RANRSSFVSAMNEKVAAICQNIKDDGRKATGEDGIVIFTIAFDLNDGSSVKKLMEQCASY 556
Query: 369 ---DPSK--YYEINSDENVMPIAKSLARNV 393
DP+K YY+ S ++M S+ V
Sbjct: 557 GITDPTKKLYYDAKSSSDLMAAFDSITEQV 586
>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495601|gb|ADR52200.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 463
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQV 44
M NK+ RLKKC G F VI+A+LL ++ +++D V
Sbjct: 1 MVFNKSLFFNFKRLKKCYNGSFFVISALLLPVIFMVIGLLIDLV 44
>gi|110634434|ref|YP_674642.1| hypothetical protein Meso_2084 [Mesorhizobium sp. BNC1]
gi|110285418|gb|ABG63477.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 549
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 257 KDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLS 316
++P+ T P S ++ + + ++ + + N NH S Y++ + + S
Sbjct: 406 REPF--TEGKEPASDVEKIMIVLTDGANNMGLSNNRNHALGSSYSSFGYLVEDRLTRERS 463
Query: 317 RSSVEKEKIEKVLQDCHYMHKRHRTGR-DAITIFSVGFS-PDQDTRYTLRQCASDPSKYY 374
+ V +E + L C + + + D +TI+++ PD T L++CA+ P Y+
Sbjct: 464 QRRVTEEMNRRTLAACENAKREYTPSKEDDVTIYTIRLEEPDVATGTLLQECATGPGYYF 523
Query: 375 EINSDENVMPIAKSLARNVIT 395
+ S + I K + R+ IT
Sbjct: 524 DSPSRTQLNAIFKEI-RDGIT 543
>gi|126731764|ref|ZP_01747569.1| hypothetical protein SSE37_00930 [Sagittula stellata E-37]
gi|126707930|gb|EBA06991.1| hypothetical protein SSE37_00930 [Sagittula stellata E-37]
Length = 648
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 19 RGVFLVITAILLSSFV-------------AIVDVVVDQVTVMQKTAWLQEVLDHVIYRTS 65
RGV+L++T++L+ F+ +IVD+V+ +TV+ W+ + + + I+R S
Sbjct: 50 RGVYLMLTSVLV--FLLYPAHGRSPTHRPSIVDLVLIGLTVLSIGYWIDQYVSYAIFRVS 107
Query: 66 PKNLYDLREAG 76
N YDL G
Sbjct: 108 SPNQYDLVMGG 118
>gi|291225015|ref|XP_002732495.1| PREDICTED: UDP-glucose pyrophosphorylase 2-like [Saccoglossus
kowalevskii]
Length = 517
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 325 IEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCAS--------DPSKYYEI 376
++ +Q +++K++ G D + F+ D+DT LR+ S + SKY I
Sbjct: 150 LDLAVQQIEHLNKKY--GSDVPLVLMNSFNTDEDTNKVLRKYDSCQVQISTFNQSKYPRI 207
Query: 377 NSDENVMPIAKSLARNVITNWF 398
N D +++PIAKS++ + + W+
Sbjct: 208 NKD-SLLPIAKSVSSDDLEAWY 228
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040591|gb|ACT57387.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040606|gb|ACT57402.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats.
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040684|gb|ACT57480.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 407/408 (99%), Positives = 407/408 (99%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039812|gb|ACT56608.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats.
Identities = 373/408 (91%), Positives = 381/408 (93%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL
Sbjct: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA
Sbjct: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240
Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Y DN ++D Y TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360
Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
>gi|315122409|ref|YP_004062898.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495811|gb|ADR52410.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 411
Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats.
Identities = 140/416 (33%), Positives = 221/416 (53%), Gaps = 21/416 (5%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
MF +NFL RL CT G FL+++A+LLSSF+ I+D++ D +++ LQ +D+
Sbjct: 1 MFYYRNFLSVFSRLNHCTNGSFLIVSAVLLSSFLTIMDIMRDYTDMIRVRNMLQSSIDYA 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120
++ +P L R+ I+ +I L++ L I+ IV + + +
Sbjct: 61 LH-NNPNELSVGTIKQREMLIKKRIGYFLDSNYKGTLLTEEQIKLIVNQSTVSITERSFY 119
Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
P QF ++I L +QL+ +L M K +IS+RK +YK+N+ LM++PF W G W+
Sbjct: 120 PQQFHINIELHKNIQLKSLILHMAMNPKKDFNISQRKSSLYKKNVALMVVPFTWTGEWIP 179
Query: 181 SR---GKVADSKVHPPKYLEYSHYYQ-QYLN-RNTLVKNFLSQIPYKNFCMAPYHYSSIL 235
+ S+ P L+ H+ + +Y N RN K FLS+I N C+APYHYS+I+
Sbjct: 180 PSLFTTQFTVSQDLLPSDLKTEHFKKTEYFNKRNQFFKMFLSKIKENNLCIAPYHYSAIV 239
Query: 236 YWAVGTLTYSVDNKTT----TREYYKDPYYATWDHFPYSFIKNVF---DMTSNQFGDGQV 288
YW+ G +Y + TT R+ Y Y WD P ++I ++F ++ SN+
Sbjct: 240 YWSEGIFSYKLPFSTTFLYSFRDIYVKQYSTIWDMKPSNYILDLFAGAELHSNR------ 293
Query: 289 LTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-RTGRDAIT 347
LT + CF G Q K+ML++A GNQ+S E K+ C M K + ++ IT
Sbjct: 294 LTPADPCFRRGVIQKKFMLIIAAGNQISDRKNSAEYF-KMKHGCTLMGKNMGKNPQEEIT 352
Query: 348 IFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTI 403
++S+G SPD DT+ L QC P +YYEI S +++ P+ L RN+ + W F+I
Sbjct: 353 VYSLGISPDPDTKRDLIQCTRHPDRYYEIQSYKDIAPVIDRLERNISSVWNDGFSI 408
>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495601|gb|ADR52200.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 463
Score = 43.2 bits (100), Expect = 0.082, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 1 MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
M NK+ RLKKC G F VI+A+LL ++ +++D V L + ++
Sbjct: 1 MVFNKSLFFNFKRLKKCYNGSFFVISALLLPVIFMVIGLLIDLVRWGYYHNSLVQAVNTA 60
Query: 61 IYRTSPKNLYDLREAGRDNFIRHQIE------KALNTYNSRDLSNIGSIESIVKDAVILT 114
S + L + + ++ + + LN +N G ++S +I
Sbjct: 61 ALSASVQLLNSVEDKSKEKALSSVLGENNIKQYLLNNLKISLYNNFGEMDS---QRIIQH 117
Query: 115 KNVNSLPLQFT--VDIALSTTVQL 136
VN + T +++ + L
Sbjct: 118 TKVNIYNRKGTHIINVYSHYNLPL 141
>gi|220906794|ref|YP_002482105.1| signal transduction histidine kinase [Cyanothece sp. PCC 7425]
gi|219863405|gb|ACL43744.1| signal transduction histidine kinase [Cyanothece sp. PCC 7425]
Length = 1560
Score = 40.5 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 103 IESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKG----KVDISRRKK 158
++ + I N ++ +L VQ R + LQM + + D+S +
Sbjct: 975 LQQLANQVGIAIYQANLYQQVQQLNQSLEEQVQERTAQLQMALSATSMGTWEWDLSNNVE 1034
Query: 159 VMYKQNIGLMIMP-------FAWDGYWL--ASRGKVADSKVHPPKYLEYSHYYQQYLNRN 209
+Q+ GLM F DG + + S VH P LEY Q R
Sbjct: 1035 RWSEQSYGLMGYQVDQQGNIFDLDGQAVNTPPSHNLFLSHVH-PDDLEYLERVQTQSLRE 1093
Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYAT 263
AP+ Y W+ G++ + + + P A
Sbjct: 1094 Q----------------APFEYEFRFVWSDGSIHWCYTRGAYIFDAHGQPLRAV 1131
>gi|316964581|gb|EFV49619.1| conserved hypothetical protein [Trichinella spiralis]
Length = 271
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 31 SSFVAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALN 90
S+F+AI + + ++ + L V + + YDL +R Q+EK +
Sbjct: 48 SNFMAIFVITRQEGDKLEVLS-TSSSLKPVSFPNFYVDNYDLTT------LRSQLEKIIL 100
Query: 91 TYNSRDLSNIGSIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGK 150
NS+ + I+ IVKDA+ + L FT D + + L ++Q+ QSK
Sbjct: 101 HSNSQKSHSEEEIKKIVKDAM---HHSTLLKQGFTPDASNTDNSWLETVIVQISDQSKKH 157
Query: 151 VDI 153
V +
Sbjct: 158 VGL 160
>gi|226499930|ref|NP_001141473.1| hypothetical protein LOC100273583 [Zea mays]
gi|194704720|gb|ACF86444.1| unknown [Zea mays]
Length = 504
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 232 SSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTN 291
+ + + + L + T E Y ++ +F + ++ F G + T
Sbjct: 208 AQLAFVSDEVLPPKLSYNYTFIETTYTLYTNSFLNFGQNAAQDSFHEMLRSRGSSENATL 267
Query: 292 TNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIE 326
+ C P G S+N+ M++ G SRS++E + ++
Sbjct: 268 ADPCAPRGYSRNEEMMLRMSG--ASRSTLENQYVD 300
>gi|194701456|gb|ACF84812.1| unknown [Zea mays]
Length = 374
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 232 SSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTN 291
+ + + + L + T E Y ++ +F + ++ F G + T
Sbjct: 78 AQLAFVSDEVLPPKLSYNYTFIETTYTLYTNSFLNFGQNAAQDSFHEMLRSRGSSENATL 137
Query: 292 TNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIE 326
+ C P G S+N+ M++ G SRS++E + ++
Sbjct: 138 ADPCAPRGYSRNEEMMLRMSG--ASRSTLENQYVD 170
>gi|326679371|ref|XP_690846.5| PREDICTED: interferon-induced very large GTPase 1 [Danio rerio]
Length = 1700
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 46 VMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDL--SNIGSI 103
+++ A Q+ +IY T+P+ + NFIR ++ + + +++ S
Sbjct: 1403 ILKTLAEKQDFRAFIIYITNPREHF-------KNFIRDEVNQFVTKTFEKNVRPKMENST 1455
Query: 104 ESIVKDAVILTKNVNSLPLQFTVDIAL---STTVQLRGSLLQMFSQS------KGKVDIS 154
+ + + + + + ++ L T QL G L+ FS+S +G ++S
Sbjct: 1456 KVLEQQITNAARESSKYVKETDGNVGLWLRHFTQQLSGVLI--FSESDLIGVNQGDANVS 1513
Query: 155 RRKKVMYKQNIGLMIMPFAWDGYWLASRGKVADSKVHPPKYLEYSHYYQ 203
+ V+ K+ L + F + + +V + H P + H+ Q
Sbjct: 1514 FLEDVIKKE---LPSIKFDIFSKFRPEKFQVKLEQAHRPDEILIDHFCQ 1559
>gi|222149754|ref|YP_002550711.1| hypothetical protein Avi_3756 [Agrobacterium vitis S4]
gi|221736736|gb|ACM37699.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 437
Score = 37.4 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 13 RLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDL 72
RL + + G F ++TA+LL + + + +D ++Q + LQ +D + +
Sbjct: 41 RLLRHSGGNFGMMTAVLLPVSIGVAGLAMDATEMVQSRSALQSSVDAAALAAASAMSNGM 100
Query: 73 REAGRDNFIRHQIEKALNTYNSRD--LSNIGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
EA + + L +RD S++ I D + T VNS + V++
Sbjct: 101 SEADAIALAKSFLSSQLANTMARDENTSSVDQITQAEPDISVKTTQVNSSSTSYDVELTG 160
Query: 131 STTVQL 136
S T+ +
Sbjct: 161 SYTITM 166
>gi|150866507|ref|XP_001386136.2| putative transcription factor [Scheffersomyces stipitis CBS 6054]
gi|149387763|gb|ABN68107.2| putative transcription factor [Scheffersomyces stipitis CBS 6054]
Length = 649
Score = 37.0 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 105/293 (35%), Gaps = 44/293 (15%)
Query: 57 LDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKN 116
L+ + + + +E DN IR +I K +N ++ L N+G + N
Sbjct: 290 LEFINEFSHKTKMNISQEVNLDNLIRERIYKFININSNYWLINLG----------LSNNN 339
Query: 117 VNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDG 176
N + ++ + + + + S + S K+ + + K +N+ ++I
Sbjct: 340 YNGFTQDYIINKSSNIDILNKTSEGDHYINSLLKISMIQSK---LNENMNILI------- 389
Query: 177 YWLASRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQI---PYKNFCMAPYHYSS 233
G ++S P L S N ++ + L++I + + S
Sbjct: 390 ------GNNSESVSLLPNQLNTSKLIN--FNMFEIIIDDLNKILVRDDNSLVLNNLIKIS 441
Query: 234 ILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTN 293
I + + YS+ T YK H+ +K+ F + S+QF D + N
Sbjct: 442 IEFSKLQLFVYSLSKSDITILEYK--------HYITKVLKSCFIIFSSQFQDNSLNFNQL 493
Query: 294 HCFPHGASQNKYMLML-----AIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRT 341
+ ++ML I N +S + KEK ++ + K +
Sbjct: 494 PIHYKFPIELAMLIMLRVFKSPIMNSISDYKLVKEKFNQMYDNIIMGGKNNED 546
>gi|193700169|ref|XP_001949866.1| PREDICTED: protein singed-like [Acyrthosiphon pisum]
Length = 520
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 295 CFPHGASQNKYMLM-LAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGF 353
C A ++ L+ LA Q++ SV +++ + ++ +H T+F++
Sbjct: 142 CTAKAAGSSELWLVHLAARPQVNLRSVGRKRFAHLSENLDEIHVDANIPWGEDTLFTLEL 201
Query: 354 SPDQDTRYTLRQC 366
PD D +Y + C
Sbjct: 202 RPDDDFKYAIHTC 214
>gi|15891094|ref|NP_356766.1| hypothetical protein Atu3868 [Agrobacterium tumefaciens str. C58]
gi|15159433|gb|AAK89551.1| hypothetical protein Atu3868 [Agrobacterium tumefaciens str. C58]
Length = 412
Score = 36.6 bits (83), Expect = 8.1, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 18 TRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEV------LDHVIYRTSPKNLYD 71
T G F ++TAILL + + ++ VMQ A +Q R L D
Sbjct: 17 TSGNFGMMTAILLPVLLGVAGAGMELANVMQVKADMQNTADSAALAAATEARLREGKLSD 76
Query: 72 LREAG-RDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
+ NFI Q+EK +L+ IE +T N+ + V+ +
Sbjct: 77 EQIKEIAKNFIAAQMEK--------NLTAEEKIELEKNSPTRVTTTENARGKTYAVETTI 128
Query: 131 STTVQLRGSL 140
+QL L
Sbjct: 129 KHQIQLNPML 138
>gi|224058383|ref|XP_002195268.1| PREDICTED: Janus kinase 1 (a protein tyrosine kinase) [Taeniopygia
guttata]
Length = 1190
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 192 PPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNF---CMAPYHYSSILYWAVGTLTYSVDN 248
PK + Y HY + LNR +NFL++I N + ++ +I +V V
Sbjct: 249 LPKDISYKHYIPETLNRTIRQRNFLTRIRINNVFKHFLKEFNNKTICNNSVSPRDLKVKY 308
Query: 249 KTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDG 286
+T E Y A + F SF+ + N+F G
Sbjct: 309 LSTM-EILTKYYGA--EIFETSFLLISAENEVNKFNCG 343
>gi|329766483|ref|ZP_08258027.1| thiamine-monophosphate kinase [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137082|gb|EGG41374.1| thiamine-monophosphate kinase [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 317
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 62 YRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRD--LSNIGSIESIVKDAVILTKNVNS 119
Y S + + + F++ I+ +N D + N I S + + L+ +N
Sbjct: 158 YTASGLKILLGKNKKSNQFVKKVIKSFVNPRPKLDFGVRNRRYISSSMDSSDGLSATLNE 217
Query: 120 LPLQ----FTVD-----------IALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQN 164
+ Q F ++ + L+ + L + + + +S++ K + K+N
Sbjct: 218 MANQSKCRFVINNIPTGKDMIEFVKLNK-MNLNELVFHGGEEYEFVFTVSKKHKAIIKKN 276
Query: 165 IGLMIMPFAWDGYWLASRGKV--ADSKVHPPKYLEYSHYYQ 203
+ P GY RG D + P K L + H+ +
Sbjct: 277 ALQLNTPIIEIGYVTKGRGVFLETDERDVPLKDLGWKHFKK 317
>gi|197105075|ref|YP_002130452.1| hypothetical protein PHZ_c1612 [Phenylobacterium zucineum HLK1]
gi|196478495|gb|ACG78023.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 521
Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 35/85 (41%)
Query: 311 IGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDP 370
G ++ SS ++E+ + + + I I+++ + L+ CAS
Sbjct: 432 AGRPITESSSQRERTAALDDRLLKLCANMKAPAKDIEIYAIRVEVSSGSSSVLQTCASSA 491
Query: 371 SKYYEINSDENVMPIAKSLARNVIT 395
YY++ + ++ +S+A +
Sbjct: 492 DHYYDVQNAADMTMAFQSIAGQIAA 516
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.312 0.132 0.367
Lambda K H
0.267 0.0402 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,918,537,097
Number of Sequences: 14124377
Number of extensions: 261780602
Number of successful extensions: 758990
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 758959
Number of HSP's gapped (non-prelim): 49
length of query: 408
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 267
effective length of database: 2,851,256,473
effective search space: 761285478291
effective search space used: 761285478291
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 82 (36.2 bits)