RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62] (408 letters) >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Length = 269 Score = 36.8 bits (84), Expect = 0.005 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 10/60 (16%) Query: 341 TGRDAITIFSVGFSPDQDT-------RYTLRQCASDPSKYYEINSDENVMPIAKSLARNV 393 D +F+VG + D ++ +S P Y + + I + L R Sbjct: 211 IAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNV---TDTTKILEQLNRYF 267 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457) Length = 259 Score = 31.4 bits (70), Expect = 0.19 Identities = 15/168 (8%), Positives = 43/168 (25%), Gaps = 10/168 (5%) Query: 231 YSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLT 290 Y++ V N + + Y + K + Sbjct: 91 YATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD--- 147 Query: 291 NTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFS 350 + + +++L + I+++ + R D + ++ Sbjct: 148 DVPPEGWNRTRH---VIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 204 Query: 351 VGFSPDQDTRYTLRQCASDP---SKYYEINSDENVMPIAKSLARNVIT 395 G P + + AS +++ EN+ + + + Sbjct: 205 FGVGPLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS 251 >2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprotein, glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} (A:267-366) Length = 100 Score = 28.6 bits (64), Expect = 1.5 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 308 MLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCA 367 +G + + +++ C + T I S G+ P + + ++ Sbjct: 36 SFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTK---IGPDSWGWDPKKVP--SDQKEF 90 Query: 368 SDPSKYYEINS 378 + + +Y I+S Sbjct: 91 YEKAGFY-ISS 100 >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} (A:1-61,A:124-208) Length = 146 Score = 28.2 bits (63), Expect = 1.8 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%) Query: 53 LQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDA-V 111 L + D I P + R R + A+ DL+N +IE+ A + Sbjct: 82 LTAIWDVSIRLEVPXADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADL 141 Query: 112 ILTK 115 + Sbjct: 142 TWPQ 145 >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} (A:) Length = 193 Score = 27.9 bits (61), Expect = 2.8 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 7/64 (10%) Query: 35 AIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPK-------NLYDLREAGRDNFIRHQIEK 87 +VD VD + +L ++L N +L A + I+ +E Sbjct: 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 Query: 88 ALNT 91 + Sbjct: 184 EIQK 187 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} (A:202-299) Length = 98 Score = 27.1 bits (60), Expect = 3.7 Identities = 7/39 (17%), Positives = 13/39 (33%) Query: 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRT 341 + Y + Q+ + K+ VL+ KR Sbjct: 37 HNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDMCEKRSIN 75 >2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} (A:102-199) Length = 98 Score = 27.0 bits (60), Expect = 4.8 Identities = 4/44 (9%), Positives = 15/44 (34%), Gaps = 1/44 (2%) Query: 166 GLMIMPFAWDGYW-LASRGKVADSKVHPPKYLEYSHYYQQYLNR 208 G ++ + S+G + + + + + + +R Sbjct: 2 GSLVSTYLDGDEILFKSKGSIKSEQALXANGILXNINHHRLRDR 45 >2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* (A:123-226) Length = 104 Score = 26.7 bits (60), Expect = 5.1 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 10/44 (22%) Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTR 253 T++ IP SI W +G +VDN T R Sbjct: 38 TVITGLFGAIPGIG--------HSIQTWLLG--GPAVDNATLNR 71 >3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} (C:108-213) Length = 106 Score = 26.7 bits (60), Expect = 5.8 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 10/44 (22%) Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTR 253 T++ N S IP+ + I+ W G +SV N T R Sbjct: 38 TVITNLFSAIPFVG--------NDIVSWLWGG--FSVSNPTIQR 71 >3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster} (A:) Length = 146 Score = 26.8 bits (59), Expect = 5.9 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 22/99 (22%) Query: 3 QNKNFLLGVLRLKKCTRGVFLVIT-----------AILLSSFVAIVDVVVDQVTVMQKTA 51 Q+K F L +K+ RG F+ + + LS+ D + Sbjct: 13 QSKRFYL---DVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLG 69 Query: 52 --------WLQEVLDHVIYRTSPKNLYDLREAGRDNFIR 82 ++ ++ + + DL+E R F+R Sbjct: 70 PPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLR 108 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.134 0.402 Gapped Lambda K H 0.267 0.0610 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,081,825 Number of extensions: 137862 Number of successful extensions: 405 Number of sequences better than 10.0: 1 Number of HSP's gapped: 402 Number of HSP's successfully gapped: 21 Length of query: 408 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 317 Effective length of database: 1,879,794 Effective search space: 595894698 Effective search space used: 595894698 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.6 bits)