RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780914|ref|YP_003065327.1| hypothetical protein
CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)



>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus,
           CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A
           {Streptococcus pneumoniae}
           (A:221-279,A:318-447,A:506-585)
          Length = 269

 Score = 36.8 bits (84), Expect = 0.005
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 341 TGRDAITIFSVGFSPDQDT-------RYTLRQCASDPSKYYEINSDENVMPIAKSLARNV 393
              D   +F+VG   + D           ++  +S P  Y  +    +   I + L R  
Sbjct: 211 IAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNV---TDTTKILEQLNRYF 267


>3hrz_D Complement factor B; serine protease, glycosilated,
           multi-domain, complement system, convertase, complement
           alternate pathway, complement pathway; HET: NAG P6G;
           2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457)
          Length = 259

 Score = 31.4 bits (70), Expect = 0.19
 Identities = 15/168 (8%), Positives = 43/168 (25%), Gaps = 10/168 (5%)

Query: 231 YSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLT 290
           Y++     V        N     +   +  Y        +  K       +         
Sbjct: 91  YATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD--- 147

Query: 291 NTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFS 350
           +      +       +++L      +        I+++    +    R     D + ++ 
Sbjct: 148 DVPPEGWNRTRH---VIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 204

Query: 351 VGFSPDQDTRYTLRQCASDP---SKYYEINSDENVMPIAKSLARNVIT 395
            G  P  +    +   AS        +++   EN+  +   +     +
Sbjct: 205 FGVGPLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS 251


>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
           conformations, modulation of activity, glycoprotein,
           glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
           {Penicillium citrinum} (A:267-366)
          Length = 100

 Score = 28.6 bits (64), Expect = 1.5
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 308 MLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCA 367
              +G  +       +   +++  C   +    T    I   S G+ P +    + ++  
Sbjct: 36  SFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTK---IGPDSWGWDPKKVP--SDQKEF 90

Query: 368 SDPSKYYEINS 378
            + + +Y I+S
Sbjct: 91  YEKAGFY-ISS 100


>3c8u_A Fructokinase; YP_612366.1, putative fructose transport
           system kinase, structural genomics, joint center for
           structural genomics, JCSG; 1.95A {Silicibacter SP}
           (A:1-61,A:124-208)
          Length = 146

 Score = 28.2 bits (63), Expect = 1.8
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 53  LQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDA-V 111
           L  + D  I    P    + R   R        + A+      DL+N  +IE+    A +
Sbjct: 82  LTAIWDVSIRLEVPXADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADL 141

Query: 112 ILTK 115
              +
Sbjct: 142 TWPQ 145


>2ged_A SR-beta, signal recognition particle receptor beta subunit;
           protein transport, G protein, proline isomerization,
           circular permutation; 2.20A {Saccharomyces cerevisiae}
           (A:)
          Length = 193

 Score = 27.9 bits (61), Expect = 2.8
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 35  AIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPK-------NLYDLREAGRDNFIRHQIEK 87
            +VD  VD   +     +L ++L                 N  +L  A   + I+  +E 
Sbjct: 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183

Query: 88  ALNT 91
            +  
Sbjct: 184 EIQK 187


>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
           dimethyladenosine transferase, structural genomics,
           structural genomics consortium; 1.89A {Plasmodium
           falciparum} (A:202-299)
          Length = 98

 Score = 27.1 bits (60), Expect = 3.7
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRT 341
           + Y     +  Q+  +   K+    VL+      KR   
Sbjct: 37  HNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDMCEKRSIN 75


>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase,
           ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
           (A:102-199)
          Length = 98

 Score = 27.0 bits (60), Expect = 4.8
 Identities = 4/44 (9%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 166 GLMIMPFAWDGYW-LASRGKVADSKVHPPKYLEYSHYYQQYLNR 208
           G ++  +         S+G +   +      +  +  + +  +R
Sbjct: 2   GSLVSTYLDGDEILFKSKGSIKSEQALXANGILXNINHHRLRDR 45


>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1
           C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A
           {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A*
           1zrt_C* (A:123-226)
          Length = 104

 Score = 26.7 bits (60), Expect = 5.1
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 10/44 (22%)

Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTR 253
           T++      IP            SI  W +G    +VDN T  R
Sbjct: 38  TVITGLFGAIPGIG--------HSIQTWLLG--GPAVDNATLNR 71


>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron
           transfer complex, cytochrome BC1 complex,
           mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
           HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
           cerevisiae} (C:108-213)
          Length = 106

 Score = 26.7 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 10/44 (22%)

Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTR 253
           T++ N  S IP+          + I+ W  G   +SV N T  R
Sbjct: 38  TVITNLFSAIPFVG--------NDIVSWLWGG--FSVSNPTIQR 71


>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR
           repeat, PUR domain, whirly fold, DNA binding protein,
           RNA binding protein; 2.10A {Drosophila melanogaster}
           (A:)
          Length = 146

 Score = 26.8 bits (59), Expect = 5.9
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 22/99 (22%)

Query: 3   QNKNFLLGVLRLKKCTRGVFLVIT-----------AILLSSFVAIVDVVVDQVTVMQKTA 51
           Q+K F L    +K+  RG F+ +             + LS+     D +           
Sbjct: 13  QSKRFYL---DVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLG 69

Query: 52  --------WLQEVLDHVIYRTSPKNLYDLREAGRDNFIR 82
                      ++   ++ +   +   DL+E  R  F+R
Sbjct: 70  PPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLR 108


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,081,825
Number of extensions: 137862
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 21
Length of query: 408
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 317
Effective length of database: 1,879,794
Effective search space: 595894698
Effective search space used: 595894698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)