HHsearch alignment for GI: 254780915 and conserved domain: TIGR02290
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family; InterPro: IPR011977 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family consists of probable oligoendopeptidases belonging to MEROPS peptidase family M3, subfamily M3B (clan MA(E)). It is related to lactococcal PepF and group B streptococcal PepB (IPR004438 from INTERPRO) but in a distinct clade with considerable sequence differences not only to IPR004438 from INTERPRO but also to IPR011976 from INTERPRO. Members are not characterised with respect to their substrates and the activity profile may differ..
Probab=100.00 E-value=0 Score=949.04 Aligned_cols=583 Identities=36% Similarity=0.617 Sum_probs=560.2
Q ss_pred CCCHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 679357278889-2789999999999999999997423310233499--8999999999999999999999999864205
Q gi|254780915|r 38 RWNLEDLYPSHD-SQEISNDMECIEHESLAFKTRWEGNLAHATNQKN--CHSLGAAIAEYERICELIGRIASYAMLSYNC 114 (626)
Q Consensus 38 ~WdL~~ly~~~~-~~e~~~dl~~~~~~i~~~~~~~~~~l~~~~~~~~--~~~l~~~l~~~e~i~~~l~rv~~ya~l~~s~ 114 (626)
T Consensus 1 ~WdL~~lY~~~~~s~e~~~~~~~~~~~~~~l~~~~~~~~~~~d-~~~~~~~~~~~~l~~~e~~~~~~~~~~~ya~l~~s~ 79 (600)
T TIGR02290 1 EWDLSDLYPGGSESPEFEEDLEKIKALADELESLLKEKLTPLD-AKGRLKEKLQNALKRYEALSELLSKVGAYASLLYSA 79 (600)
T ss_pred CCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9881002689988978899999999999999999985124222-001128899999999999999998788999999886
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 79918999999999999999999887416988719989999998469001111799999997423317167998766300
Q gi|254780915|r 115 NLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKHLLSNDMECLLSDTS 194 (626)
Q Consensus 115 dt~d~~~~~~~~~~~~~~s~~~~~l~~~~~e~~~l~e~~l~~~~~~~~~l~~y~~~~~~l~~~~~~~l~~~~E~~l~~~~ 194 (626)
T Consensus 80 d~~~~~a~~~~~~~~~~~~~~~~~~~~f~~~l~~~~d~~~~~~l~~~~~l~~~~~~L~~~R~~~~~~Lse~EE~l~~~l~ 159 (600)
T TIGR02290 80 DTEDPEAKKLLGELEALSSEIQQALLFFTLELARLSDEVWAELLSKDPDLAPYRFYLKELRKEAPHTLSEEEEKLIAALS 159 (600)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 06868899999999999998886301799998248688999997368431135752999998575439998999998746
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 10003677777764444332210-----0347523321354188876799999999998650542169999998666788
Q gi|254780915|r 195 QVGREALKRFFCENIESLRFKIN-----DQKIPLTKAYKSFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEI 269 (626)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~dr~~Rk~a~~a~~~~~~~~~~~~a~il~~iv~~r~e 269 (626)
T Consensus 160 ~~G~~AW~~Lyd~~~~~l~~~~~~~~ge~~~l~~~~~~nl~~~pd~~vR~~A~~a~~~~~~~~~~~~a~~LN~l~g~~~~ 239 (600)
T TIGR02290 160 LTGRAAWSRLYDELTGTLRIPVEEKDGEEEELSLEQALNLLRDPDAEVRKKAFKALLKAWEKEAPTLAAILNALAGDRLT 239 (600)
T ss_pred CHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30588899999741112368885146620002699999862088888999999999999875002699998655578888
Q ss_pred HHHHCC---CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCC--CCCCC
Q ss_conf 654278---99988976222258989999999987630628-9999999999870887531234440256554--77799
Q gi|254780915|r 270 QDRWRK---YEKIADSRHLSNNVEPYVIEALMQSVKNYYPK-TSHRYYELKKKWLKLDTMYFWDRLAPLPGTS--QDIIP 343 (626)
Q Consensus 270 ~A~llG---y~s~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~lg~~~l~~wD~~~~~~~~~--~~~~~ 343 (626)
T Consensus 240 ~~~~R~~~~~~~~le~~l~~nri~~~tl~am~~a~~en~-pR~~~rY~~~KAklLG~~~L~~~D~~AP~~~~~~e~~~~~ 318 (600)
T TIGR02290 240 EYRLRGQVYYDHPLEPRLLYNRIDQETLDAMLEAIKENY-PRLFRRYLKLKAKLLGKEKLDFYDLLAPLGDSDSEAKTYT 318 (600)
T ss_pred HHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 887732445676421101330388899999999999852-8058999999888718201763165467888777766075
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999986666328999999986424850201037998743547666777510103653324679999998458999
Q gi|254780915|r 344 FEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIH 423 (626)
Q Consensus 344 ~ee~~~~v~~~~~~~~~e~~~~~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~~~~~I~~N~~~~~~dv~TL~HE~GHa~H 423 (626)
T Consensus 319 f~EA~~lvl~~F~~fsP~~A~~A~~af~~~WIDa~pRpGK~gGAFC~~~~~~~~P~vl~Ny~G~~~dV~TLAHELGHA~H 398 (600)
T TIGR02290 319 FDEAKELVLEAFGKFSPEMADFAEKAFEEGWIDAEPRPGKRGGAFCTGFPPSKEPRVLMNYDGSFSDVSTLAHELGHAYH 398 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 89899999999876357899999999757962034783388985336888876661462458884158999898655899
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99612568776578005999886888999999998413899899999999986206999999999999999997212016
Q gi|254780915|r 424 FVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRST 503 (626)
Q Consensus 424 ~~ls~~~~~~~~~~~~~~~aE~~S~~~E~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~ 503 (626)
T Consensus 399 ~~~~~d-~p~l~~~yPmtlAETASiF~E~l~~d~ll~~ak~~eeK~~lL~~~~~d~~at~~~i~~rf~FE~~~~~~-R~~ 476 (600)
T TIGR02290 399 SELAKD-QPLLNARYPMTLAETASIFAEMLLFDALLKEAKTEEEKLSLLAEKLEDAIATLVRIHARFLFERRFHEA-RKE 476 (600)
T ss_pred HHHHHC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 998741-372540588733678999768999999988308088989999998710899998999999999999998-671
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 899989999999999998607763458878885001525410667--525899999999999999999567332899999
Q gi|254780915|r 504 GDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESS--FYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYL 581 (626)
Q Consensus 504 ~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~~--fY~y~Y~~~~~~a~~l~~~~~~~~~~~~~~~y~ 581 (626)
T Consensus 477 ~~Ls~~~~~~Lm~eaq~~~YG~~l~~~~-~~p~~Wa~k~HF~~~~~~FYnYpY~FG~LfvlglY~~y~~~G-~~F~~~Y~ 554 (600)
T TIGR02290 477 GELSAEELCELMLEAQKESYGDALDESE-LHPYMWAYKPHFYHADVPFYNYPYTFGYLFVLGLYAKYKEEG-ESFVDKYI 554 (600)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 2889899868799999998546753289-885000013613417888521345899999999999999861-53799999
Q ss_pred HHHHCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99832699997999997-0889899889999999999999998609
Q gi|254780915|r 582 NILRAGNSKHYSELLLP-LNINLSDPNFWERGLQTVEKMIDDVEKM 626 (626)
Q Consensus 582 ~~L~~Ggs~~~~el~k~-~G~d~~~~~~~~~~~~~~~~~i~~~e~l 626 (626)
T Consensus 555 ~lL~~tG~~~~~el~~~H~G~Dl~~~dFW~~G~~~~~~~i~~f~~L 600 (600)
T TIGR02290 555 ALLRDTGSMTAEELVKKHLGFDLTSPDFWQKGIDVIEEKIEEFEEL 600 (600)
T ss_pred HHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9987203678899999653899998788999999999999985039