HHsearch alignment for GI: 254780915 and conserved domain: cd06258
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=100.00 E-value=0 Score=416.29 Aligned_cols=325 Identities=21% Similarity=0.247 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC----CCHHHHHH
Q ss_conf 99999866678865427899988976222258-98999999998763062899999999998708875----31234440
Q gi|254780915|r 258 FITNTLAKDEEIQDRWRKYEKIADSRHLSNNV-EPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDT----MYFWDRLA 332 (626)
Q Consensus 258 ~il~~iv~~r~e~A~llGy~s~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lg~~~----l~~wD~~~ 332 (626)
T Consensus 2 ~il~elv~lR~e~A~lLGy~~~a~~~l~~~ma~tpe~v~~fl~~l~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 81 (365)
T cd06258 2 ALLEELVSLRNQLARLLGYENFADYKLALQEAKSPETVEGFFEELKRKLRPLLAKLREEISAAKQKEEEIYGELPARYDV 81 (365)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 79999999999999984999999999987339999999999999999989999999999999974233554311134568
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCC-----CCCEEECCCCC-
Q ss_conf 256554777998999999998666632899999998642485020103799874354766677-----75101036533-
Q gi|254780915|r 333 PLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPS-----VHPYILLNYLG- 406 (626)
Q Consensus 333 ~~~~~~~~~~~~ee~~~~v~~~~~~~~~e~~~~~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~-----~~~~I~~N~~~- 406 (626)
T Consensus 82 ~-~~~~~~~f~~~~v~~~~------------------~~~fylDl~~R~gK~~~a~~~~~~~~~~~~~p~~~l~~N~~~~ 142 (365)
T cd06258 82 D-SALLKEFFDAERPWEGA------------------LPFFYLDLYDRKGKYPHGFCTGLDPGFNRQDKDVRILANFTSP 142 (365)
T ss_pred C-HHHCCCCCCHHHHHHHH------------------HHHHEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCC
T ss_conf 9-76736658799999998------------------8877118888999998871602378877879806898268998
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHH---------HHCCCCCHHHH
Q ss_conf --------2467999999845899999612-56877657800599988688899999999---------84138998999
Q gi|254780915|r 407 --------KPQDVMTLAHELGHGIHFVLSS-ETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEER 468 (626)
Q Consensus 407 --------~~~dv~TL~HE~GHa~H~~ls~-~~~~~~~~~~~~~~aE~~S~~~E~~~~~~---------~~~~~~~~~~~ 468 (626)
T Consensus 143 ~~~~p~lL~~~ev~TlfHEfGHalh~ll~~~~~~~~~gt~~~~df~E~pS~l~E~~~~~~~~L~~~a~h~~~~~~~~~~~ 222 (365)
T cd06258 143 AAPDPVLLGHDDINTLFHEFGHAVHFLLIQQRYPFQERTPTSTDFAEAQSMFLESFATDPEWLERYARHYQGGVVPDELI 222 (365)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 88898756699999999998788887435655665467778865122028999987258999976403102579979999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC-C
Q ss_conf 999999862069999999999999999972120168999899999999999986077634588788850015254106-6
Q gi|254780915|r 469 KILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIE-S 547 (626)
Q Consensus 469 ~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~-~ 547 (626)
T Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~d~~lh~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~Hi~~gy 293 (365)
T cd06258 223 EKLIAARLPNTLYETRRILVVAKFEKALYENP-----DRELELQKLWRDLVKEILGVR----PDPSTPDPAAFPHLAGGS 293 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCC
T ss_conf 99999984558987899999999999975388-----642017999999988627778----999887766556013788
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHH-HHHCCCCCCHHHHHHHC-CCCCCCHHHHH
Q ss_conf 7525899999999999999999567-----3328999999-98326999979999970-88989988999
Q gi|254780915|r 548 SFYVYAYAFGNCLVNSLYDIYKSNT-----VDCFKEKYLN-ILRAGNSKHYSELLLPL-NINLSDPNFWE 610 (626)
Q Consensus 548 ~fY~y~Y~~~~~~a~~l~~~~~~~~-----~~~~~~~y~~-~L~~Ggs~~~~el~k~~-G~d~~~~~~~~ 610 (626)
T Consensus 294 ~a~YysY~~a~vla~d~~~~f~~~~~~~~~~~~~G~~~r~~il~~G~s~~~~el~~~f~Gr~p~~~a~l~ 363 (365)
T cd06258 294 PAYYYGYLLAEMLASQLRATFKKKVGYLTDNPEAGPRLREHILRPGNSEPWKELLKRATGEDPNADAFLD 363 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 8415899999999999999999846886468999999999986363899999999997785998078874