HHsearch alignment for GI: 254780915 and conserved domain: cd06258

>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=100.00  E-value=0  Score=416.29  Aligned_cols=325  Identities=21%  Similarity=0.247  Sum_probs=264.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC----CCHHHHHH
Q ss_conf             99999866678865427899988976222258-98999999998763062899999999998708875----31234440
Q gi|254780915|r  258 FITNTLAKDEEIQDRWRKYEKIADSRHLSNNV-EPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDT----MYFWDRLA  332 (626)
Q Consensus       258 ~il~~iv~~r~e~A~llGy~s~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lg~~~----l~~wD~~~  332 (626)
T Consensus         2 ~il~elv~lR~e~A~lLGy~~~a~~~l~~~ma~tpe~v~~fl~~l~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~   81 (365)
T cd06258           2 ALLEELVSLRNQLARLLGYENFADYKLALQEAKSPETVEGFFEELKRKLRPLLAKLREEISAAKQKEEEIYGELPARYDV   81 (365)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             79999999999999984999999999987339999999999999999989999999999999974233554311134568


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCC-----CCCEEECCCCC-
Q ss_conf             256554777998999999998666632899999998642485020103799874354766677-----75101036533-
Q gi|254780915|r  333 PLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPS-----VHPYILLNYLG-  406 (626)
Q Consensus       333 ~~~~~~~~~~~~ee~~~~v~~~~~~~~~e~~~~~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~-----~~~~I~~N~~~-  406 (626)
T Consensus        82 ~-~~~~~~~f~~~~v~~~~------------------~~~fylDl~~R~gK~~~a~~~~~~~~~~~~~p~~~l~~N~~~~  142 (365)
T cd06258          82 D-SALLKEFFDAERPWEGA------------------LPFFYLDLYDRKGKYPHGFCTGLDPGFNRQDKDVRILANFTSP  142 (365)
T ss_pred             C-HHHCCCCCCHHHHHHHH------------------HHHHEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCC
T ss_conf             9-76736658799999998------------------8877118888999998871602378877879806898268998


Q ss_pred             --------CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHH---------HHCCCCCHHHH
Q ss_conf             --------2467999999845899999612-56877657800599988688899999999---------84138998999
Q gi|254780915|r  407 --------KPQDVMTLAHELGHGIHFVLSS-ETQGILTNNSSLTLAETASIFGETLTFDS---------LLQAASSKEER  468 (626)
Q Consensus       407 --------~~~dv~TL~HE~GHa~H~~ls~-~~~~~~~~~~~~~~aE~~S~~~E~~~~~~---------~~~~~~~~~~~  468 (626)
T Consensus       143 ~~~~p~lL~~~ev~TlfHEfGHalh~ll~~~~~~~~~gt~~~~df~E~pS~l~E~~~~~~~~L~~~a~h~~~~~~~~~~~  222 (365)
T cd06258         143 AAPDPVLLGHDDINTLFHEFGHAVHFLLIQQRYPFQERTPTSTDFAEAQSMFLESFATDPEWLERYARHYQGGVVPDELI  222 (365)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf             88898756699999999998788887435655665467778865122028999987258999976403102579979999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC-C
Q ss_conf             999999862069999999999999999972120168999899999999999986077634588788850015254106-6
Q gi|254780915|r  469 KILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIE-S  547 (626)
Q Consensus       469 ~~ll~~~~~~~~~~~~~q~~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~-~  547 (626)
T Consensus       223 ~~~~~~~~~~~~~~~~~~l~~~~~d~~lh~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~Hi~~gy  293 (365)
T cd06258         223 EKLIAARLPNTLYETRRILVVAKFEKALYENP-----DRELELQKLWRDLVKEILGVR----PDPSTPDPAAFPHLAGGS  293 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCC
T ss_conf             99999984558987899999999999975388-----642017999999988627778----999887766556013788


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHH-HHHCCCCCCHHHHHHHC-CCCCCCHHHHH
Q ss_conf             7525899999999999999999567-----3328999999-98326999979999970-88989988999
Q gi|254780915|r  548 SFYVYAYAFGNCLVNSLYDIYKSNT-----VDCFKEKYLN-ILRAGNSKHYSELLLPL-NINLSDPNFWE  610 (626)
Q Consensus       548 ~fY~y~Y~~~~~~a~~l~~~~~~~~-----~~~~~~~y~~-~L~~Ggs~~~~el~k~~-G~d~~~~~~~~  610 (626)
T Consensus       294 ~a~YysY~~a~vla~d~~~~f~~~~~~~~~~~~~G~~~r~~il~~G~s~~~~el~~~f~Gr~p~~~a~l~  363 (365)
T cd06258         294 PAYYYGYLLAEMLASQLRATFKKKVGYLTDNPEAGPRLREHILRPGNSEPWKELLKRATGEDPNADAFLD  363 (365)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf             8415899999999999999999846886468999999999986363899999999997785998078874