HHsearch alignment for GI: 254780915 and conserved domain: pfam01432

>pfam01432 Peptidase_M3 Peptidase family M3. This is the Thimet oligopeptidase family, large family of mammalian and bacterial oligopeptidases that cleave medium sized peptides. The group also contains mitochondrial intermediate peptidase which is encoded by nuclear DNA but functions within the mitochondria to remove the leader sequence.
Probab=100.00  E-value=0  Score=551.49  Aligned_cols=382  Identities=23%  Similarity=0.285  Sum_probs=317.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCHH
Q ss_conf             5418887679999999999865054216999999866678865427899988976222258-989999999987630628
Q gi|254780915|r  229 SFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNV-EPYVIEALMQSVKNYYPK  307 (626)
Q Consensus       229 ~l~~~dr~~Rk~a~~a~~~~~~~~~~~~a~il~~iv~~r~e~A~llGy~s~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~  307 (626)
T Consensus         2 L~~~~dr~~Rk~a~~a~~~~~~~~~~~~~~~l~~lv~~R~~~A~llGy~s~a~~~l~~~m~~~p~~v~~fL~~l~~~~~p   81 (448)
T pfam01432         2 LKESPDRETRKKAYRAFYSRAEANRNENSALLEELLKLRAELAKLLGYPSYAEASLEDKMAKIPETVYDFLEELVNKLRP   81 (448)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             88790999999999999999870756899999999999999999779998999998754278999999999999999799


Q ss_pred             HHHHHHHHHHHHCC----CCCCCHHHHHHCC------------CCCCCCCCCHHHHHH-HHHHHHH-HHH---------H
Q ss_conf             99999999998708----8753123444025------------655477799899999-9998666-632---------8
Q gi|254780915|r  308 TSHRYYELKKKWLK----LDTMYFWDRLAPL------------PGTSQDIIPFEVARD-LVLQSYA-KFS---------P  360 (626)
Q Consensus       308 ~~~~~~~~~~~~lg----~~~l~~wD~~~~~------------~~~~~~~~~~ee~~~-~v~~~~~-~~~---------~  360 (626)
T Consensus        82 ~~~~e~~~l~~~~~~~~~~~~l~pwD~~y~~~~~~~~~~~~~~~~~~~~yf~~~~~~~~gl~~l~~~lfg~~~~~~~~~~  161 (448)
T pfam01432        82 LLHRELELLKKLKKKELGLEELQPWDVAYYSEKQREELYDPLDQEELRPYFPLEQVLEKGLFGLFERLFGITFVLEPLGE  161 (448)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999973425966556122367766767763587777660576869999999999998765323432056604


Q ss_pred             HHHHH----------HHHHHHCCCCCHHCCCCCCCCCCCCCCCCC---CCCEEECCCCC---------CHHHHHHHHHHH
Q ss_conf             99999----------998642485020103799874354766677---75101036533---------246799999984
Q gi|254780915|r  361 QMSII----------AEKFFTHNWIDAPQYDGKGSGAFAHGTIPS---VHPYILLNYLG---------KPQDVMTLAHEL  418 (626)
Q Consensus       361 e~~~~----------~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~---~~~~I~~N~~~---------~~~dv~TL~HE~  418 (626)
T Consensus       162 ~w~~dv~~~~v~d~~~~~~~g~~ylDl~~R~gK~~ga~~~~~~~~~~~p~~~i~~Nf~~~~~~~~~llt~~dV~TLfHE~  241 (448)
T pfam01432       162 VWHEDVRFYSVFDELSGGLIGEFYLDLYPRKGKRGGAYSFGLVPGRLDPVPYLLCNFTKPSSGKPSLLTHDDVETLFHEF  241 (448)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             56788877887620120400365885578775678885532678877873699951799989987757799999999998


Q ss_pred             HHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH----------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5899999612568-7765780059998868889999999984----------1389989999999998620699999999
Q gi|254780915|r  419 GHGIHFVLSSETQ-GILTNNSSLTLAETASIFGETLTFDSLL----------QAASSKEERKILLANKIEDMLNSIVRQI  487 (626)
Q Consensus       419 GHa~H~~ls~~~~-~~~~~~~~~~~aE~~S~~~E~~~~~~~~----------~~~~~~~~~~~ll~~~~~~~~~~~~~q~  487 (626)
T Consensus       242 GHalH~~ls~~~~~~~sg~~~~~dfvE~pS~~~E~~~~d~~~l~~~a~h~~t~~~l~~~~i~~l~~~~~~~~~~~~~rq~  321 (448)
T pfam01432       242 GHSMHSLLSRTEYSYVSGTNVPIDFAEIPSQFNENWLWEPLLLNLLSRHYETGEPIPAELLEKLIKSKNVNAGLFLFRQL  321 (448)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58899886136677646787782143043899999870889871535781103304099999999987641799999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999972120168999899999999999986077634588788850015254106675258999999999999999
Q gi|254780915|r  488 SFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDI  567 (626)
Q Consensus       488 ~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~~fY~y~Y~~~~~~a~~l~~~  567 (626)
T Consensus       322 ~~a~fd~~lh~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~hi~~~~Y~a~yY~Y~ya--~~~a~~~~~~  397 (448)
T pfam01432       322 MFAAFDQEIHEAAEEDQK--LDFLLEEYAELNKKYYGDPVTPDEASPLSFSHIFPHGYAANYYSYLYA--TGLALDIFEK  397 (448)
T ss_pred             HHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHCCCCCCCCCHHHHHH--HHHHHHHHHH
T ss_conf             999999999736567897--313999999999985799989998755552866588626786878999--9999999999


Q ss_pred             HHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             99567---332899999998326999979999970889899889999999
Q gi|254780915|r  568 YKSNT---VDCFKEKYLNILRAGNSKHYSELLLPLNINLSDPNFWERGLQ  614 (626)
Q Consensus       568 ~~~~~---~~~~~~~y~~~L~~Ggs~~~~el~k~~G~d~~~~~~~~~~~~  614 (626)
T Consensus       398 ~~~~~~~~~~~g~~~~~~iL~~Ggs~~p~ell~~f~gr~~~~~a~l~~~g  447 (448)
T pfam01432       398 FFEQDPLNRETGLRYYLEFLSRGGSLDPLELLKKFGGRMPSADALLRALG  447 (448)
T ss_pred             HHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf             99749987699999999984276982699999982899998589998677