HHsearch alignment for GI: 254780915 and conserved domain: pfam01432
>pfam01432 Peptidase_M3 Peptidase family M3. This is the Thimet oligopeptidase family, large family of mammalian and bacterial oligopeptidases that cleave medium sized peptides. The group also contains mitochondrial intermediate peptidase which is encoded by nuclear DNA but functions within the mitochondria to remove the leader sequence.
Probab=100.00 E-value=0 Score=551.49 Aligned_cols=382 Identities=23% Similarity=0.285 Sum_probs=317.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHHCCHH
Q ss_conf 5418887679999999999865054216999999866678865427899988976222258-989999999987630628
Q gi|254780915|r 229 SFFDSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNV-EPYVIEALMQSVKNYYPK 307 (626)
Q Consensus 229 ~l~~~dr~~Rk~a~~a~~~~~~~~~~~~a~il~~iv~~r~e~A~llGy~s~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~ 307 (626)
T Consensus 2 L~~~~dr~~Rk~a~~a~~~~~~~~~~~~~~~l~~lv~~R~~~A~llGy~s~a~~~l~~~m~~~p~~v~~fL~~l~~~~~p 81 (448)
T pfam01432 2 LKESPDRETRKKAYRAFYSRAEANRNENSALLEELLKLRAELAKLLGYPSYAEASLEDKMAKIPETVYDFLEELVNKLRP 81 (448)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88790999999999999999870756899999999999999999779998999998754278999999999999999799
Q ss_pred HHHHHHHHHHHHCC----CCCCCHHHHHHCC------------CCCCCCCCCHHHHHH-HHHHHHH-HHH---------H
Q ss_conf 99999999998708----8753123444025------------655477799899999-9998666-632---------8
Q gi|254780915|r 308 TSHRYYELKKKWLK----LDTMYFWDRLAPL------------PGTSQDIIPFEVARD-LVLQSYA-KFS---------P 360 (626)
Q Consensus 308 ~~~~~~~~~~~~lg----~~~l~~wD~~~~~------------~~~~~~~~~~ee~~~-~v~~~~~-~~~---------~ 360 (626)
T Consensus 82 ~~~~e~~~l~~~~~~~~~~~~l~pwD~~y~~~~~~~~~~~~~~~~~~~~yf~~~~~~~~gl~~l~~~lfg~~~~~~~~~~ 161 (448)
T pfam01432 82 LLHRELELLKKLKKKELGLEELQPWDVAYYSEKQREELYDPLDQEELRPYFPLEQVLEKGLFGLFERLFGITFVLEPLGE 161 (448)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999973425966556122367766767763587777660576869999999999998765323432056604
Q ss_pred HHHHH----------HHHHHHCCCCCHHCCCCCCCCCCCCCCCCC---CCCEEECCCCC---------CHHHHHHHHHHH
Q ss_conf 99999----------998642485020103799874354766677---75101036533---------246799999984
Q gi|254780915|r 361 QMSII----------AEKFFTHNWIDAPQYDGKGSGAFAHGTIPS---VHPYILLNYLG---------KPQDVMTLAHEL 418 (626)
Q Consensus 361 e~~~~----------~~~~~~~~~iD~~~r~gKr~GA~~~~~~~~---~~~~I~~N~~~---------~~~dv~TL~HE~ 418 (626)
T Consensus 162 ~w~~dv~~~~v~d~~~~~~~g~~ylDl~~R~gK~~ga~~~~~~~~~~~p~~~i~~Nf~~~~~~~~~llt~~dV~TLfHE~ 241 (448)
T pfam01432 162 VWHEDVRFYSVFDELSGGLIGEFYLDLYPRKGKRGGAYSFGLVPGRLDPVPYLLCNFTKPSSGKPSLLTHDDVETLFHEF 241 (448)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 56788877887620120400365885578775678885532678877873699951799989987757799999999998
Q ss_pred HHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH----------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999612568-7765780059998868889999999984----------1389989999999998620699999999
Q gi|254780915|r 419 GHGIHFVLSSETQ-GILTNNSSLTLAETASIFGETLTFDSLL----------QAASSKEERKILLANKIEDMLNSIVRQI 487 (626)
Q Consensus 419 GHa~H~~ls~~~~-~~~~~~~~~~~aE~~S~~~E~~~~~~~~----------~~~~~~~~~~~ll~~~~~~~~~~~~~q~ 487 (626)
T Consensus 242 GHalH~~ls~~~~~~~sg~~~~~dfvE~pS~~~E~~~~d~~~l~~~a~h~~t~~~l~~~~i~~l~~~~~~~~~~~~~rq~ 321 (448)
T pfam01432 242 GHSMHSLLSRTEYSYVSGTNVPIDFAEIPSQFNENWLWEPLLLNLLSRHYETGEPIPAELLEKLIKSKNVNAGLFLFRQL 321 (448)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58899886136677646787782143043899999870889871535781103304099999999987641799999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999972120168999899999999999986077634588788850015254106675258999999999999999
Q gi|254780915|r 488 SFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDI 567 (626)
Q Consensus 488 ~~~~fe~~~h~~~~~~~~~t~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~H~y~~~fY~y~Y~~~~~~a~~l~~~ 567 (626)
T Consensus 322 ~~a~fd~~lh~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~hi~~~~Y~a~yY~Y~ya--~~~a~~~~~~ 397 (448)
T pfam01432 322 MFAAFDQEIHEAAEEDQK--LDFLLEEYAELNKKYYGDPVTPDEASPLSFSHIFPHGYAANYYSYLYA--TGLALDIFEK 397 (448)
T ss_pred HHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHCCCCCCCCCHHHHHH--HHHHHHHHHH
T ss_conf 999999999736567897--313999999999985799989998755552866588626786878999--9999999999
Q ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99567---332899999998326999979999970889899889999999
Q gi|254780915|r 568 YKSNT---VDCFKEKYLNILRAGNSKHYSELLLPLNINLSDPNFWERGLQ 614 (626)
Q Consensus 568 ~~~~~---~~~~~~~y~~~L~~Ggs~~~~el~k~~G~d~~~~~~~~~~~~ 614 (626)
T Consensus 398 ~~~~~~~~~~~g~~~~~~iL~~Ggs~~p~ell~~f~gr~~~~~a~l~~~g 447 (448)
T pfam01432 398 FFEQDPLNRETGLRYYLEFLSRGGSLDPLELLKKFGGRMPSADALLRALG 447 (448)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 99749987699999999984276982699999982899998589998677