RPSBLAST alignment for GI: 254780915 and conserved domain: TIGR02289
>gnl|CDD|131342 TIGR02289, M3_not_pepF, oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family. Length = 549
Score = 83.6 bits (207), Expect = 1e-16
Identities = 82/373 (21%), Positives = 137/373 (36%), Gaps = 15/373 (4%)
Query: 232 DSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEP 291
D +R RK A A S F I + L + + D + N
Sbjct: 155 DPNRSTRKKAWYARSEFFAVVEEELDRIYDELVQIRTQIALNLGFSNYRDYMYKLKNRTD 214
Query: 292 YVIE---ALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVAR 348
Y E +S+ Y + ++KKK L + T+ WD A ++ PF
Sbjct: 215 YSAEDCYKYRESILKYVVPLWTKLRKIKKKRLGIKTLRPWDESAVFL--DGNVKPFGNVD 272
Query: 349 DLVLQS---YAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYL 405
L+ ++ Y + S + N +D GK +G + P+I N+
Sbjct: 273 FLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFN 332
Query: 406 GKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSK 465
G D+ L HE GH H S + + AE AS+ E L+ + +
Sbjct: 333 GTSGDIDVLTHEAGHAFHVYESRKDLLPEYRWPTYEAAELASMSMELLSMPWWDLFYTDE 392
Query: 466 EERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGP 525
++ K + ++ L+ + + F+ ++ T P R +E + E +K
Sbjct: 393 KDLKKAKISHLKGALSFLPYGVIVDHFQHWVYENPNHT---PEER-DEKYAELEKRYQPS 448
Query: 526 AFDLSDLEY--GSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNI 583
++ LE G+FW+ H E FY Y +Y IYK + K+ Y +
Sbjct: 449 TVYIAGLELEIGTFWLRQLHIFEVPFYYIEYTIAQIGALQIYKIYKEDPEKALKD-YKKL 507
Query: 584 LRAGNSKHYSELL 596
AG S+ + EL
Sbjct: 508 CSAGGSQSFLELY 520