RPSBLAST alignment for GI: 254780915 and conserved domain: TIGR00181
>gnl|CDD|161749 TIGR00181, pepF, oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis. Length = 591
Score = 278 bits (712), Expect = 4e-75
Identities = 171/597 (28%), Positives = 276/597 (46%), Gaps = 24/597 (4%)
Query: 38 RWNLEDLYPSHDSQEISND-MECIEHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYER 96
+W+L+DLY + + E+ + +E E AFK + A+A E+
Sbjct: 9 KWDLDDLYKNKEEWELFLEALEEDIKEIKAFKKGLLHSKET---------FLEALALEEK 59
Query: 97 ICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQ 156
I L+ R+ +YA + + +++ P ++ FF EI ++E ++ +
Sbjct: 60 ILILLNRLYNYASMKLSTDVTDPEANAISQKLSNLYTKVASATSFFEPEILEIEEKII-K 118
Query: 157 SYAQDPLTLK-YSAWIKNIRKIKKHLLSNDMECLLSDTSQVGREALKRFFCENIESLRFK 215
+ +DP L Y ++ I + K H+LS ++E LLS S+V + + F
Sbjct: 119 EWLKDPEELADYKRALEEIFRDKPHILSEEVEKLLSALSEVFGSPSDIYSTLTNADMDFG 178
Query: 216 -IND---QKIPLTKAYKSFF---DSDREVRKSAAKALSHTFNKSSHIFSFITNTLAKDEE 268
I D +K P+T + F + DRE+RK A ++ + K + F+ + +
Sbjct: 179 SIEDYKGKKYPITNSTYENFLQKNKDREIRKKAYESFYKAYRKHKNTFAALYYGNVQKNV 238
Query: 269 IQDRWRKYEKIADSRHLSNNVEPYVIEALMQSVKNYYPKTSHRYYELKKKWLKLDTMYFW 328
+ R YE D+ S+ V V + L ++K P RYY+L+KK LKLD M +
Sbjct: 239 FLAKLRNYESYIDASLFSDEVPREVYDNLYDTIKKNAP-VLQRYYKLRKKVLKLDKMEPY 297
Query: 329 DRLAPLPGTSQDIIPFEVARDLVLQSYAKFSPQMSIIAEKFFTHNWIDAPQYDGKGSGAF 388
D PL E A++L+L+S + I ++ F W+D + GK SGA+
Sbjct: 298 DLYLPLVKEKNPKFSIEEAKELILKSLEPLGEEYIKILKRAFNERWVDYAENKGKRSGAY 357
Query: 389 AHGTIPSVHPYILLNYLGKPQDVMTLAHELGHGIHFVLSSETQGILTNNSSLTLAETASI 448
+ G V PYIL+N+ G V TLAHELGH +H SS+ Q ++ S+ AE AS
Sbjct: 358 SIG-GYKVKPYILMNWDGTLNSVFTLAHELGHSMHSYFSSKHQPYPNSDYSIFYAEIAST 416
Query: 449 FGETLTFDSLLQAASSKEERKILLANKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPT 508
F E L D LL+ ++ E + +L +I + + RQ F +FE + + +
Sbjct: 417 FNELLLADYLLKNSNDPEMKIYILLERISNFFGTFTRQTLFAEFEYEAYELIEEGEPLTA 476
Query: 509 HRINEIWLETQKESLGPAFDLSDLEYGSFWMMVPHFIESSFYVYAYAFGNCLVNSLYDIY 568
+NEI+ K+ G D G WM +PHF FYVY YA G +LY+
Sbjct: 477 ETLNEIYANLLKKYFGDLVK-IDEGAGLTWMRIPHFY-MGFYVYKYATGQVAATALYEKI 534
Query: 569 KSNTVDCFKEKYLNILRAGNSKHYSELLLPLNINLSDPNFWERGLQTVEKMIDDVEK 625
K EKYL L++G SK+ E L ++L+ P W+ + ID++E+
Sbjct: 535 KEEGKGA-VEKYLKFLKSGGSKYPLETLKIAGVDLTKPQPWQAAINIFSDWIDELEE 590