BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780915|ref|YP_003065328.1| oligoendopeptidase F
[Candidatus Liberibacter asiaticus str. psy62]
(626 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MTKYPDYEFFSNAFFRKALRSSDMTTMDSQENLGNLPRWNLEDLYPSHDSQEISNDMECI 60
MTKYPDYEFFSNAFFRKALRSSDMTTMDSQENLGNLPRWNLEDLYPSHDSQEISNDMECI
Sbjct: 1 MTKYPDYEFFSNAFFRKALRSSDMTTMDSQENLGNLPRWNLEDLYPSHDSQEISNDMECI 60
Query: 61 EHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPT 120
EHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPT
Sbjct: 61 EHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPT 120
Query: 121 IRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKH 180
IRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKH
Sbjct: 121 IRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKH 180
Query: 181 LLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKS 240
LLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKS
Sbjct: 181 LLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKS 240
Query: 241 AAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPYVIEALMQS 300
AAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPYVIEALMQS
Sbjct: 241 AAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPYVIEALMQS 300
Query: 301 VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP 360
VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP
Sbjct: 301 VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP 360
Query: 361 QMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGH 420
QMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGH
Sbjct: 361 QMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGH 420
Query: 421 GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDML 480
GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDML
Sbjct: 421 GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDML 480
Query: 481 NSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMM 540
NSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMM
Sbjct: 481 NSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMM 540
Query: 541 VPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPLN 600
VPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPLN
Sbjct: 541 VPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPLN 600
Query: 601 INLSDPNFWERGLQTVEKMIDDVEKM 626
INLSDPNFWERGLQTVEKMIDDVEKM
Sbjct: 601 INLSDPNFWERGLQTVEKMIDDVEKM 626
>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 957
Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 474 NKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTH 509
N + ++N + R I FY+F+ K +E+ +GD+ H
Sbjct: 276 NVLSQIMNKLPRSI-FYEFKGKGPSEKEYSGDVKYH 310
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 25.0 bits (53), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 240 SAAKALSHTFNKSSHIFSFIT-------NTLAKDEEIQDRWRKYEKIADSRHLSNNVE 290
+ +A SH + + S + N + + EEI + +RK + I R L NVE
Sbjct: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 425 VLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSI 483
++ S I + SL A A IFG + S + + K+E KIL I D+L+SI
Sbjct: 715 IVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSI 773
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 23.9 bits (50), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 297 LMQSVKNYYPKTSHRYYELKKKWLKLD-----TMYFW 328
LMQS+ NY + +Y LK + L + +Y W
Sbjct: 104 LMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAW 140
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,596
Number of Sequences: 1233
Number of extensions: 16723
Number of successful extensions: 43
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 8
length of query: 626
length of database: 328,796
effective HSP length: 79
effective length of query: 547
effective length of database: 231,389
effective search space: 126569783
effective search space used: 126569783
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)