BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62] (626 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 626/626 (100%), Positives = 626/626 (100%) Query: 1 MTKYPDYEFFSNAFFRKALRSSDMTTMDSQENLGNLPRWNLEDLYPSHDSQEISNDMECI 60 MTKYPDYEFFSNAFFRKALRSSDMTTMDSQENLGNLPRWNLEDLYPSHDSQEISNDMECI Sbjct: 1 MTKYPDYEFFSNAFFRKALRSSDMTTMDSQENLGNLPRWNLEDLYPSHDSQEISNDMECI 60 Query: 61 EHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPT 120 EHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPT Sbjct: 61 EHESLAFKTRWEGNLAHATNQKNCHSLGAAIAEYERICELIGRIASYAMLSYNCNLSSPT 120 Query: 121 IRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKH 180 IRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKH Sbjct: 121 IRKFYTDINAKLADFEKVLIFFALEINTLDEALLEQSYAQDPLTLKYSAWIKNIRKIKKH 180 Query: 181 LLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKS 240 LLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKS Sbjct: 181 LLSNDMECLLSDTSQVGREALKRFFCENIESLRFKINDQKIPLTKAYKSFFDSDREVRKS 240 Query: 241 AAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPYVIEALMQS 300 AAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPYVIEALMQS Sbjct: 241 AAKALSHTFNKSSHIFSFITNTLAKDEEIQDRWRKYEKIADSRHLSNNVEPYVIEALMQS 300 Query: 301 VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP 360 VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP Sbjct: 301 VKNYYPKTSHRYYELKKKWLKLDTMYFWDRLAPLPGTSQDIIPFEVARDLVLQSYAKFSP 360 Query: 361 QMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGH 420 QMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGH Sbjct: 361 QMSIIAEKFFTHNWIDAPQYDGKGSGAFAHGTIPSVHPYILLNYLGKPQDVMTLAHELGH 420 Query: 421 GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDML 480 GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDML Sbjct: 421 GIHFVLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDML 480 Query: 481 NSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMM 540 NSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMM Sbjct: 481 NSIVRQISFYDFELKLHTERRSTGDIPTHRINEIWLETQKESLGPAFDLSDLEYGSFWMM 540 Query: 541 VPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPLN 600 VPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPLN Sbjct: 541 VPHFIESSFYVYAYAFGNCLVNSLYDIYKSNTVDCFKEKYLNILRAGNSKHYSELLLPLN 600 Query: 601 INLSDPNFWERGLQTVEKMIDDVEKM 626 INLSDPNFWERGLQTVEKMIDDVEKM Sbjct: 601 INLSDPNFWERGLQTVEKMIDDVEKM 626 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 474 NKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTH 509 N + ++N + R I FY+F+ K +E+ +GD+ H Sbjct: 276 NVLSQIMNKLPRSI-FYEFKGKGPSEKEYSGDVKYH 310 >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 Score = 25.0 bits (53), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 240 SAAKALSHTFNKSSHIFSFIT-------NTLAKDEEIQDRWRKYEKIADSRHLSNNVE 290 + +A SH + + S + N + + EEI + +RK + I R L NVE Sbjct: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 29/59 (49%) Query: 425 VLSSETQGILTNNSSLTLAETASIFGETLTFDSLLQAASSKEERKILLANKIEDMLNSI 483 ++ S I + SL A A IFG + S + + K+E KIL I D+L+SI Sbjct: 715 IVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSI 773 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 23.9 bits (50), Expect = 9.3, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%) Query: 297 LMQSVKNYYPKTSHRYYELKKKWLKLD-----TMYFW 328 LMQS+ NY + +Y LK + L + +Y W Sbjct: 104 LMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAW 140 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,596 Number of Sequences: 1233 Number of extensions: 16723 Number of successful extensions: 43 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 8 length of query: 626 length of database: 328,796 effective HSP length: 79 effective length of query: 547 effective length of database: 231,389 effective search space: 126569783 effective search space used: 126569783 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)