HHsearch alignment for GI: 254780916 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.29  E-value=1.2e-06  Score=66.66  Aligned_cols=206  Identities=16%  Similarity=0.172  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_conf             111111112222222222222222344320488732777436799999984267543-------3210123465542100
Q gi|254780916|r  135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF-------FPFFIVNCGMIDQDKI  207 (482)
Q Consensus       135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~-------~~fi~v~c~~~~~~~~  207 (482)
T Consensus       174 ~~GklDpvIGRd~EI~r~i~IL~R--R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L-----  246 (823)
T CHL00095        174 YEGNLDPVIGRDKEIERVIQILGR--RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLL-----  246 (823)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHH-----
T ss_conf             838999875956999999999977--3248850237999879999999999760889986875993688428877-----


Q ss_pred             HHHHHCCCCCCCCCCCCCC-C---CCCCCCCCEEEECCCCHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             2433112555532211100-1---234466714751664200--------188999888877642001123553212343
Q gi|254780916|r  208 EKFLFGDVDLQTKNSAQFL-G---KFIEANGGTIVLEEPDAL--------PLAVQGRIYNFIETGKIEFFDSRGAIRLDV  275 (482)
Q Consensus       208 e~~lFG~~~~~~~~~~~~~-g---~~~~a~~Gtl~l~ei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~  275 (482)
T Consensus       247 ---~AGtk--yRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarG-------------el  308 (823)
T CHL00095        247 ---LAGTK--YRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARG-------------KL  308 (823)
T ss_pred             ---HHCCC--CCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCC-------------CC
T ss_conf             ---53342--2267999999999999857986999735165328897666431788765786489-------------86


Q ss_pred             EEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHCCCCCCCCC
Q ss_conf             1565214332-111111233379998865433446778774422225566777---------------641011223333
Q gi|254780916|r  276 RLIFLTEKNL-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFL---------------QSFCTKNAIKQI  339 (482)
Q Consensus       276 RiIa~t~~~L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl---------------~~~~~~~~~~~~  339 (482)
T Consensus       309 ~~IGATT~~EYrk~iEk---D~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~-dr  384 (823)
T CHL00095        309 QCIGATTLEEYRKHIEK---DPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIK-DR  384 (823)
T ss_pred             EEEEECCHHHHHHHHHC---CHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CC
T ss_conf             69970788999998530---588996268410289987999999999999998750885047899999998776403-77


Q ss_pred             CCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHH
Q ss_conf             211111000---------122338986899999999998
Q gi|254780916|r  340 SISDKALSL---------LTKYPWIDNVQELKNILLRAV  369 (482)
Q Consensus       340 ~ls~~a~~~---------L~~y~WPGNvREL~n~i~r~~  369 (482)
T Consensus       385 ~LPDKAIDllDeA~A~~~~~~~~~~~~~~~~~~~~~~~~  423 (823)
T CHL00095        385 FLPDKAIDLLDEAGSRVRLINKQLPPAARELDKELRHIL  423 (823)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             782178888999989999873258678999999999999