HHsearch alignment for GI: 254780916 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.29 E-value=1.2e-06 Score=66.66 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_conf 111111112222222222222222344320488732777436799999984267543-------3210123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAF-------FPFFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~-------~~fi~v~c~~~~~~~~ 207 (482)
T Consensus 174 ~~GklDpvIGRd~EI~r~i~IL~R--R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L----- 246 (823)
T CHL00095 174 YEGNLDPVIGRDKEIERVIQILGR--RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLL----- 246 (823)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHH-----
T ss_conf 838999875956999999999977--3248850237999879999999999760889986875993688428877-----
Q ss_pred HHHHHCCCCCCCCCCCCCC-C---CCCCCCCCEEEECCCCHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-1---234466714751664200--------188999888877642001123553212343
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-G---KFIEANGGTIVLEEPDAL--------PLAVQGRIYNFIETGKIEFFDSRGAIRLDV 275 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g---~~~~a~~Gtl~l~ei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 275 (482)
T Consensus 247 ---~AGtk--yRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarG-------------el 308 (823)
T CHL00095 247 ---LAGTK--YRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARG-------------KL 308 (823)
T ss_pred ---HHCCC--CCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCC-------------CC
T ss_conf ---53342--2267999999999999857986999735165328897666431788765786489-------------86
Q ss_pred EEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHCCCCCCCCC
Q ss_conf 1565214332-111111233379998865433446778774422225566777---------------641011223333
Q gi|254780916|r 276 RLIFLTEKNL-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFL---------------QSFCTKNAIKQI 339 (482)
Q Consensus 276 RiIa~t~~~L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl---------------~~~~~~~~~~~~ 339 (482)
T Consensus 309 ~~IGATT~~EYrk~iEk---D~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~-dr 384 (823)
T CHL00095 309 QCIGATTLEEYRKHIEK---DPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIK-DR 384 (823)
T ss_pred EEEEECCHHHHHHHHHC---CHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CC
T ss_conf 69970788999998530---588996268410289987999999999999998750885047899999998776403-77
Q ss_pred CCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 211111000---------122338986899999999998
Q gi|254780916|r 340 SISDKALSL---------LTKYPWIDNVQELKNILLRAV 369 (482)
Q Consensus 340 ~ls~~a~~~---------L~~y~WPGNvREL~n~i~r~~ 369 (482)
T Consensus 385 ~LPDKAIDllDeA~A~~~~~~~~~~~~~~~~~~~~~~~~ 423 (823)
T CHL00095 385 FLPDKAIDLLDEAGSRVRLINKQLPPAARELDKELRHIL 423 (823)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 782178888999989999873258678999999999999