HHsearch alignment for GI: 254780916 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=97.88 E-value=8.5e-06 Score=60.60 Aligned_cols=214 Identities=16% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCCCCCC-------CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111122222222---2222222234-------4320488732777436799999984267543321012346554
Q gi|254780916|r 134 NEHCALDSLIAVSPAMI---QVVDLARKAG-------DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMID 203 (482)
Q Consensus 134 ~~~~~~~~LiG~S~~m~---~v~~~i~~~a-------~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~ 203 (482)
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE---A~VPFf~iSGS~FV 220 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE---AGVPFFSISGSDFV 220 (596)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCC---CCCCCEECCCHHHH
T ss_conf 667675664186799999999999863855667523534565268559998727899998454---68983530344464
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCHHHHHH----------H-HHHHHHHHHHHCCCCCCCC
Q ss_conf 2100243311255553221110012344667---147516642001889----------9-9888877642001123553
Q gi|254780916|r 204 QDKIEKFLFGDVDLQTKNSAQFLGKFIEANG---GTIVLEEPDALPLAV----------Q-GRIYNFIETGKIEFFDSRG 269 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~---Gtl~l~ei~~L~~~~----------Q-~~Ll~~l~~~~~~~~g~~~ 269 (482)
T Consensus 221 e-----mfVG-v-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD--GF~~~~ 287 (596)
T COG0465 221 E-----MFVG-V-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD--GFGGNE 287 (596)
T ss_pred H-----HHCC-C-----CCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCCC
T ss_conf 4-----3147-8-----8388899999855159966987634331454577889980699999988885201--578887
Q ss_pred CCCCCCEEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 212343156521433--2-1111112333799988654334467787744222255667776410112233332111110
Q gi|254780916|r 270 AIRLDVRLIFLTEKN--L-LPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKAL 346 (482)
Q Consensus 270 ~~~~~~RiIa~t~~~--L-~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~ 346 (482)
T Consensus 288 g----viviaaTNRpdVlD~ALlRpgRFDR-------qI~V~~PDi~gRe~Il--------kvH~~~-----~~l~~~V~ 343 (596)
T COG0465 288 G----VIVIAATNRPDVLDPALLRPGRFDR-------QILVELPDIKGREQIL--------KVHAKN-----KPLAEDVD 343 (596)
T ss_pred C----EEEECCCCCCCCCHHHHCCCCCCCE-------EEECCCCCHHHHHHHH--------HHHHHC-----CCCCCCCC
T ss_conf 5----4885267874333176528877662-------5544785156578887--------886415-----77776678
Q ss_pred CCCCCCCCCCCHH-HHHHHHHHHHH-H--CCCCCCCHHHHHHHHC
Q ss_conf 0012233898689-99999999987-4--3898106889545421
Q gi|254780916|r 347 SLLTKYPWIDNVQ-ELKNILLRAVI-G--LKDSHLTEDRFVLLLS 387 (482)
Q Consensus 347 ~~L~~y~WPGNvR-EL~n~i~r~~i-~--~~~~~i~~~~~~~~l~ 387 (482)
T Consensus 344 l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 344 LKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 889864377856306765566889999883684675345388999