HHsearch alignment for GI: 254780916 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.62 E-value=2.3e-08 Score=78.78 Aligned_cols=265 Identities=19% Similarity=0.210 Sum_probs=151.8
Q ss_pred CCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC--CCCCCEE
Q ss_conf 32048-873277743679999998426754332101234655421002433112555532211100-1234--4667147
Q gi|254780916|r 162 CAIPI-MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFL-GKFI--EANGGTI 237 (482)
Q Consensus 162 ~~~~v-li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~~-g~~~--~a~~Gtl 237 (482)
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~---RkfvR~sLGGvrD---EAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~ 421 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALG---RKFVRISLGGVRD---EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVF 421 (782)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHC---CCEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 7885799978998870118999999958---9779995476542---777535531233568728999999867768747
Q ss_pred EECCCCHHHHHHH----HHHHHHHH---HHHCCCCCCCCCCC---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5166420018899----98888776---42001123553212---34315652143321111112333799988654334
Q gi|254780916|r 238 VLEEPDALPLAVQ----GRIYNFIE---TGKIEFFDSRGAIR---LDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLI 307 (482)
Q Consensus 238 ~l~ei~~L~~~~Q----~~Ll~~l~---~~~~~~~g~~~~~~---~~~RiIa~t~~~L~~~~~~g~fr~dLy~rL~~~~i 307 (482)
T Consensus 422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~D--hYLev~yDLS~VmFiaTANsl------------------~t--I 479 (782)
T COG0466 422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSD--HYLEVPYDLSKVMFIATANSL------------------DT--I 479 (782)
T ss_pred EEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHH--CCCCCCCCHHHEEEEEECCCC------------------CC--C
T ss_conf 8640333167777886888886269765676122--201676644325888603751------------------32--9
Q ss_pred HHHHHHHHHHHHHH----------H-HHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCC-CCCCHHHHHHHH----HHHH
Q ss_conf 46778774422225----------5-667776410112233--3321111100012233-898689999999----9998
Q gi|254780916|r 308 NISTLRSRSEDIPW----------L-VHFFLQSFCTKNAIK--QISISDKALSLLTKYP-WIDNVQELKNIL----LRAV 369 (482)
Q Consensus 308 ~iPpLReR~eDI~~----------L-~~~fl~~~~~~~~~~--~~~ls~~a~~~L~~y~-WPGNvREL~n~i----~r~~ 369 (482)
T Consensus 480 -P~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~ 558 (782)
T COG0466 480 -PAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAA 558 (782)
T ss_pred -CHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -8678430305642688869999999984456899975998233556589999999987676210389999999999999
Q ss_pred HH----CCCC--CCCHHHHHHHHCCCCCCCCCCC--------CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 74----3898--1068895454212445432234--------32222223344432100000000112344454325899
Q gi|254780916|r 370 IG----LKDS--HLTEDRFVLLLSREGKKEREFH--------TETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRL 435 (482)
Q Consensus 370 i~----~~~~--~i~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (482)
T Consensus 559 ~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGG----d~L~--IE~~~~~Gkg~l~lTG~L 632 (782)
T COG0466 559 KKILLKKEKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGG----DLLT--IEAVKMPGKGKLTLTGSL 632 (782)
T ss_pred HHHHHCCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCC----EEEE--EEEEEECCCCCEEEECCH
T ss_conf 9997257566244278899997398634753112478870585444424786----4899--988871687507996057
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCH
Q ss_conf 999999999999982872789997848998
Q gi|254780916|r 436 SDIEKEIIGLAMKLYRAQMSEVARRLGIGR 465 (482)
Q Consensus 436 ~e~E~~~I~~aL~~~~Gn~~~aA~~LGIsR 465 (482)
T Consensus 633 GdVMKESa~~A~s~vrs----~a~~~~i~~ 658 (782)
T COG0466 633 GDVMKESAQAALSYVRS----RAEKLGIDP 658 (782)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCC
T ss_conf 99999999999999999----898719983