HHsearch alignment for GI: 254780916 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=97.46 E-value=0.00025 Score=50.17 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCC-----------------CCCCCCCCCC
Q ss_conf 2222222222222222344320488732777436799999984267----543-----------------3210123465
Q gi|254780916|r 143 IAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAF-----------------FPFFIVNCGM 201 (482)
Q Consensus 143 iG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~-----------------~~fi~v~c~~ 201 (482)
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~ 83 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSD 83 (325)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 33235899999999865888761003799999789999999999658664334552002244432025688659977321
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 54210024331125555322111001234466714751664200188999888877642001123553212343156521
Q gi|254780916|r 202 IDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 202 ~~~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
T Consensus 84 ~~~~~i~~~~vr---~~~~~~~~~-~--~~~~~kviiidead~mt~~A~nallk~lEep-----------~~~~~~il~~ 146 (325)
T COG0470 84 LRKIDIIVEQVR---ELAEFLSES-P--LEGGYKVVIIDEADKLTEDAANALLKTLEEP-----------PKNTRFILIT 146 (325)
T ss_pred CCCCCCHHHHHH---HHHHHCCCC-C--CCCCCEEEEEECCCCCCHHHHHHHHHHCCCC-----------CCCEEEEEEE
T ss_conf 333300699999---999860446-5--6677269997320326988887675433248-----------8871699974
Q ss_pred C
Q ss_conf 4
Q gi|254780916|r 282 E 282 (482)
Q Consensus 282 ~ 282 (482)
T Consensus 147 n 147 (325)
T COG0470 147 N 147 (325)
T ss_pred C
T ss_conf 9