HHsearch alignment for GI: 254780916 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.13 E-value=2e-10 Score=93.34 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=157.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCEEE---EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 111222222222222222234----432048---8732777436799999984267543321012346554210024331
Q gi|254780916|r 140 DSLIAVSPAMIQVVDLARKAG----DCAIPI---MIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLF 212 (482)
Q Consensus 140 ~~LiG~S~~m~~v~~~i~~~a----~~~~~v---li~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lF 212 (482)
T Consensus 491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf 65017399999999999998569999998735788667886569999999999965997444554568777787799872
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE---EEEECCCCC
Q ss_conf 12555532211100123446----67147516642001889998888776420011235532123431---565214332
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEA----NGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVR---LIFLTEKNL 285 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a----~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R---iIa~t~~~L 285 (482)
T Consensus 571 GaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrL---TD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 571 GAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRL---TDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred CCCCCCCEECC--CCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCE---ECCCCCEEECCEEEEEEECCCCH
T ss_conf 79998720065--54003766069986888412644088999999998467805---54899888430028998450265
Q ss_pred CCCC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCC
Q ss_conf 1111---------------------112333799988654334467787744222255667776410112233--33211
Q gi|254780916|r 286 LPQV---------------------KSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIK--QISIS 342 (482)
Q Consensus 286 ~~~~---------------------~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~--~~~ls 342 (482)
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~I-I~F~~L~~--~~l~~Iv~~~L~~l~~~L~~~~i~l~~s 722 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEI-IPFNPLSK--EVLERIVDLQLNRLAKRLAERGITLELS 722 (786)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 98975313432100467889999999853899898512617-85067998--9999999999999999998689559988
Q ss_pred CCCCCCCCCCCC--CCCHHHHHHHHHHHHH
Q ss_conf 111000122338--9868999999999987
Q gi|254780916|r 343 DKALSLLTKYPW--IDNVQELKNILLRAVI 370 (482)
Q Consensus 343 ~~a~~~L~~y~W--PGNvREL~n~i~r~~i 370 (482)
T Consensus 723 ~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 723 DEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 899999999646877673679999999998