HHsearch alignment for GI: 254780916 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=96.95 E-value=0.00023 Score=50.46 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCC
Q ss_conf 11111111222222222222222234432048873277743679999998426754332-------10123465542100
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFP-------FFIVNCGMIDQDKI 207 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~-------fi~v~c~~~~~~~~ 207 (482)
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR--~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L----- 237 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRR--TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL----- 237 (786)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHH-----
T ss_conf 6589887737479999999998356--889984766898889999989999974699997875887997148767-----
Q ss_pred HHHHHCCCCCCCCCCCCCC-C---CCCCCCCCEEEECCCCHHHH---------HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2433112555532211100-1---23446671475166420018---------899988887764200112355321234
Q gi|254780916|r 208 EKFLFGDVDLQTKNSAQFL-G---KFIEANGGTIVLEEPDALPL---------AVQGRIYNFIETGKIEFFDSRGAIRLD 274 (482)
Q Consensus 208 e~~lFG~~~~~~~~~~~~~-g---~~~~a~~Gtl~l~ei~~L~~---------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 274 (482)
T Consensus 238 ---vAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARG-------------e 299 (786)
T COG0542 238 ---VAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-------------E 299 (786)
T ss_pred ---HCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCC-------------C
T ss_conf ---46465--35738999999999985179849998235540577766666512566467787458-------------7
Q ss_pred CEEEEECCCC
Q ss_conf 3156521433
Q gi|254780916|r 275 VRLIFLTEKN 284 (482)
Q Consensus 275 ~RiIa~t~~~ 284 (482)
T Consensus 300 L~~IGATT~~ 309 (786)
T COG0542 300 LRCIGATTLD 309 (786)
T ss_pred EEEEEECCHH
T ss_conf 3799735589