HHsearch alignment for GI: 254780916 and conserved domain: COG0593
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair].
Probab=98.20 E-value=2.9e-06 Score=63.92 Aligned_cols=221 Identities=17% Similarity=0.172 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC
Q ss_conf 2222111111112-22222222222222234----43204887327774367999999842675433--21012346554
Q gi|254780916|r 131 SQENEHCALDSLI-AVSPAMIQVVDLARKAG----DCAIPIMIQGEFGVGKKRLSRFIHESGKRAFF--PFFIVNCGMID 203 (482)
Q Consensus 131 ~~~~~~~~~~~Li-G~S~~m~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~--~fi~v~c~~~~ 203 (482)
T Consensus 78 ~~l~~~ytFdnFv~g~~N--~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSN--RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred CCCCCCCCHHHEEECCCH--HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 568988855422047744--999999999875668868957998799997899999999999862998648850489989
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
Q ss_conf 210024331125555322111001234466714751664200188--999888877642001123553212343156521
Q gi|254780916|r 204 QDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLA--VQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLT 281 (482)
Q Consensus 204 ~~~~e~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~--~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t 281 (482)
T Consensus 156 ~~~v~a~~~-------~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-----~~-----~kqIvlts 215 (408)
T COG0593 156 NDFVKALRD-------NEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-----EN-----GKQIVLTS 215 (408)
T ss_pred HHHHHHHHH-------HHHHHHHHHH---CCCEEEECHHHHHCCCHHHHHHHHHHHHHHH-----HC-----CCEEEEEC
T ss_conf 999999885-------0488888764---2673555138675677157999999999888-----50-----88799970
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 4332111111233379998865-43--34467787744222255667776410112233332111110001223389868
Q gi|254780916|r 282 EKNLLPQVKSHVFRKDLYYRIS-VF--LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNV 358 (482)
Q Consensus 282 ~~~L~~~~~~g~fr~dLy~rL~-~~--~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv 358 (482)
T Consensus 216 dr~P~~l~---~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai--------L~kka~~~~---~~i~~ev~~~la-~~~~~nv 280 (408)
T COG0593 216 DRPPKELN---GLEDRLRSRLEWGLVVEIEPPDDETRLAI--------LRKKAEDRG---IEIPDEVLEFLA-KRLDRNV 280 (408)
T ss_pred CCCCHHHC---CCCHHHHHHHHCEEEEEECCCCHHHHHHH--------HHHHHHHCC---CCCCHHHHHHHH-HHHHCCH
T ss_conf 78832211---03588998986305775279888999999--------999998658---888879999999-9700309
Q ss_pred HHHHHHHHHHHHH--CCCCCCCHHHHHHHHCC
Q ss_conf 9999999999874--38981068895454212
Q gi|254780916|r 359 QELKNILLRAVIG--LKDSHLTEDRFVLLLSR 388 (482)
Q Consensus 359 REL~n~i~r~~i~--~~~~~i~~~~~~~~l~~ 388 (482)
T Consensus 281 ReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 281 RELEGALNRLDAFALFTKRAITIDLVKEILKD 312 (408)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999999999853875769999999998