HHsearch alignment for GI: 254780916 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=93.94 E-value=0.033 Score=35.20 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCEEEECCCHHHHHHHHHH--HHHCCCEEEEE-CC-----------------HH-HHHHHCC------CCCEEEEE-CCC
Q ss_conf 8389986998999999999--99889889998-93-----------------79-9998608------99899997-854
Q gi|254780916|r 11 KRVLIIDKDDEQIKIIKDH--VESYGYDVFIV-NV-----------------SD-LSTISKI------QVNVIFLS-LIN 62 (482)
Q Consensus 11 ~rILIVDDd~~~~~~l~~~--L~~~G~~v~~a-~~-----------------~a-l~~l~~~------~~dlillD-~~m 62 (482)
T Consensus 78 k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 78 KVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEE
T ss_conf 38999075999999999866688659779996488655533414588799746786676506753334016899942101
Q ss_pred CCCC-----HHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 6988-----89999999985789839999268-99999998885057432222222222222
Q gi|254780916|r 63 CEDD-----KENILKNIVDKIPIVPIIVQTTQ-DNIKILNCFLYNRISKFFLNLVSRKQLCD 118 (482)
Q Consensus 63 P~~d-----Glell~~i~~~~p~ipvIiiT~~-~~~~~~~~a~~~g~~d~l~KP~~~~~L~~ 118 (482)
T Consensus 158 l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e--vA~wL~a~~~-~~~~rp~~l~~ 216 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE--VADWLNAKLV-ESDWRPVPLRR 216 (766)
T ss_pred CCCCCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCHHH--HHHHHCCCCC-CCCCCCCCCCC
T ss_conf 48756586402279888852755179887311688899--9998588355-56778862015