HHsearch alignment for GI: 254780916 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.07 E-value=7.2e-06 Score=61.10 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC---------CCCC
Q ss_conf 3443204887327774367999999842675433210123465542100243311255553221110---------0123
Q gi|254780916|r 159 AGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQF---------LGKF 229 (482)
Q Consensus 159 ~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~~~~~~~~~~---------~g~~ 229 (482)
T Consensus 93 vEL~KSNILLiGPTGsGKTlLAqTLAk~---LnVPFaiADATtLTEA-------GYV----GEDVENillkLlqaadydV 158 (408)
T COG1219 93 VELSKSNILLIGPTGSGKTLLAQTLAKI---LNVPFAIADATTLTEA-------GYV----GEDVENILLKLLQAADYDV 158 (408)
T ss_pred EEEEECCEEEECCCCCCHHHHHHHHHHH---HCCCEEECCCCCHHHC-------CCC----CHHHHHHHHHHHHHCCCCH
T ss_conf 3532031799888997577999999998---4898475144412106-------635----5008999999998764588
Q ss_pred CCCCCCEEEECCCCHHHH--------------HHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 446671475166420018--------------8999888877642--00112355
Q gi|254780916|r 230 IEANGGTIVLEEPDALPL--------------AVQGRIYNFIETG--KIEFFDSR 268 (482)
Q Consensus 230 ~~a~~Gtl~l~ei~~L~~--------------~~Q~~Ll~~l~~~--~~~~~g~~ 268 (482)
T Consensus 159 ~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGR 213 (408)
T COG1219 159 ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGR 213 (408)
T ss_pred HHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC
T ss_conf 8882885998510254205789872343673589999999970751023999888