HHsearch alignment for GI: 254780916 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=94.83 E-value=0.023 Score=36.33 Aligned_cols=123 Identities=16% Similarity=0.297 Sum_probs=61.1
Q ss_pred CCCEEEECCCCHHHHH------------HHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEEECCCC---CCCCCC--HHHH
Q ss_conf 6714751664200188------------99988887764200112355321234-3156521433---211111--1233
Q gi|254780916|r 233 NGGTIVLEEPDALPLA------------VQGRIYNFIETGKIEFFDSRGAIRLD-VRLIFLTEKN---LLPQVK--SHVF 294 (482)
Q Consensus 233 ~~Gtl~l~ei~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~-~RiIa~t~~~---L~~~~~--~g~f 294 (482)
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T--KyG~VkTdHILFIasGAFh~sKPSDLiPELQGRf 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST--KYGPVKTDHILFIASGAFHVAKPSDLIPELQGRF 327 (444)
T ss_pred HCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEC--CCCCCCCCEEEEEECCCEECCCHHHCCHHHCCCC
T ss_conf 56908973466787437889988664320102103105754431--5444014437887148200378132176662777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH-------H
Q ss_conf 37999886543344677877442222--------55667776410112233332111110001223389868-------9
Q gi|254780916|r 295 RKDLYYRISVFLINISTLRSRSEDIP--------WLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNV-------Q 359 (482)
Q Consensus 295 r~dLy~rL~~~~i~iPpLReR~eDI~--------~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv-------R 359 (482)
T Consensus 328 ---------PIRVEL~~Lt--~~Df~rILtep~~sLikQY~aLlk-TE~v~-l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 328 ---------PIRVELDALT--KEDFERILTEPKASLIKQYKALLK-TEGVE-LEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred ---------CEEEECCCCC--HHHHHHHHCCCHHHHHHHHHHHHH-HCCEE-EEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf ---------3488704489--989999963760789999999973-15834-8853799999999999855430001178
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999987
Q gi|254780916|r 360 ELKNILLRAVI 370 (482)
Q Consensus 360 EL~n~i~r~~i 370 (482)
T Consensus 395 RLhTvlErlLe 405 (444)
T COG1220 395 RLHTVLERLLE 405 (444)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999998