HHsearch alignment for GI: 254780916 and conserved domain: COG1223

Probab=98.13  E-value=1.2e-06  Score=66.53  Aligned_cols=166  Identities=21%  Similarity=0.333  Sum_probs=95.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC------CCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             2221111111122222222222------22222344-3204887327774367999999842675433210123465542
Q gi|254780916|r  132 QENEHCALDSLIAVSPAMIQVV------DLARKAGD-CAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQ  204 (482)
Q Consensus       132 ~~~~~~~~~~LiG~S~~m~~v~------~~i~~~a~-~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~  204 (482)
T Consensus       113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane---~kvp~l~vkat----  185 (368)
T COG1223         113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE---AKVPLLLVKAT----  185 (368)
T ss_pred             HHHCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCC---CCCCEEEECHH----
T ss_conf             66136617664163988888799999964968763457541687789996487999987254---57854871168----


Q ss_pred             CCCHHHHHC-CCCCCCCCCCCCC-CCCCC---CCCCEEEECCCCHHHHH--HHHH------HHHHHHHHHCCCCCCCCCC
Q ss_conf             100243311-2555532211100-12344---66714751664200188--9998------8887764200112355321
Q gi|254780916|r  205 DKIEKFLFG-DVDLQTKNSAQFL-GKFIE---ANGGTIVLEEPDALPLA--VQGR------IYNFIETGKIEFFDSRGAI  271 (482)
Q Consensus       205 ~~~e~~lFG-~~~~~~~~~~~~~-g~~~~---a~~Gtl~l~ei~~L~~~--~Q~~------Ll~~l~~~~~~~~g~~~~~  271 (482)
T Consensus       186 -----~liGehVG----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe-lDgi~ene--  253 (368)
T COG1223         186 -----ELIGEHVG----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE-LDGIKENE--  253 (368)
T ss_pred             -----HHHHHHHH----HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCCCC--
T ss_conf             -----88887743----5989999999988751984998400245553045788645499999999985-01744577--


Q ss_pred             CCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2343156521433--2111111233379998865433446778774422225566777641
Q gi|254780916|r  272 RLDVRLIFLTEKN--LLPQVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSF  330 (482)
Q Consensus       272 ~~~~RiIa~t~~~--L~~~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~  330 (482)
T Consensus       254 --GVvtIaaTN~p~~LD~ai-RsRFEeE-------IEF~LP~~eEr~~----ile~y~k~~  300 (368)
T COG1223         254 --GVVTIAATNRPELLDPAI-RSRFEEE-------IEFKLPNDEERLE----ILEYYAKKF  300 (368)
T ss_pred             --CEEEEEECCCHHHCCHHH-HHHHHHE-------EEEECCCHHHHHH----HHHHHHHHC
T ss_conf             --569995059846507888-8655650-------6564888589999----999989858