HHsearch alignment for GI: 254780916 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=95.36 E-value=0.015 Score=37.59 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=136.1
Q ss_pred HHHHHCCCCC--EEEEECCCCCCCHHHHHHHH--HHHCCCCCEEEEECCC-------CHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9998608998--99997854698889999999--9857898399992689-------99999988850574322222222
Q gi|254780916|r 45 LSTISKIQVN--VIFLSLINCEDDKENILKNI--VDKIPIVPIIVQTTQD-------NIKILNCFLYNRISKFFLNLVSR 113 (482)
Q Consensus 45 l~~l~~~~~d--lillD~~mP~~dGlell~~i--~~~~p~ipvIiiT~~~-------~~~~~~~a~~~g~~d~l~KP~~~ 113 (482)
T Consensus 55 v~mik~gk~aGrgiL--i~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvri---kE~ 129 (450)
T COG1224 55 VKMIKQGKMAGRGIL--IVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRI---KET 129 (450)
T ss_pred HHHHHHCCCCCCEEE--EECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHCEEE---EEE
T ss_conf 999971766661799--978999768899999999858999821501332233100088999999998645486---466
Q ss_pred CCCCCCCCCC--CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCE-EEEEECCCCCH----HHH
Q ss_conf 2222222222--22222222222-1111111122222222222-------22222344320-48873277743----679
Q gi|254780916|r 114 KQLCDSIICA--LREGVVPSQEN-EHCALDSLIAVSPAMIQVV-------DLARKAGDCAI-PIMIQGEFGVG----KKR 178 (482)
Q Consensus 114 ~~L~~~i~~a--l~~~~~~~~~~-~~~~~~~LiG~S~~m~~v~-------~~i~~~a~~~~-~vli~Ge~GtG----K~~ 178 (482)
T Consensus 130 reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~~GDVI~Id~etG~V~klGrs~ 209 (450)
T COG1224 130 REVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVEEGDVIYIDAETGRVKKLGRSK 209 (450)
T ss_pred EEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 68887789999876235799876655453289999636645762598999999983744587899982566799942242
Q ss_pred HHHHHHHC-------CCCCCCCC------C-CCCCCCCCCC-----CCHHHHHCCCCCCCCCC----CC-CCCCCCC---
Q ss_conf 99999842-------67543321------0-1234655421-----00243311255553221----11-0012344---
Q gi|254780916|r 179 LSRFIHES-------GKRAFFPF------F-IVNCGMIDQD-----KIEKFLFGDVDLQTKNS----AQ-FLGKFIE--- 231 (482)
Q Consensus 179 ~A~~iH~~-------s~r~~~~f------i-~v~c~~~~~~-----~~e~~lFG~~~~~~~~~----~~-~~g~~~~--- 231 (482)
T Consensus 210 ~~~~-~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~~evR~~vn~~V~~~ieeGkA 288 (450)
T COG1224 210 ARAR-EDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEITDEVREEVNEKVKKWIEEGKA 288 (450)
T ss_pred CCCC-CCCCCCCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 3354-223344217987798852566778999870031343204111375652776657889999999999999854957
Q ss_pred -CCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHH
Q ss_conf -66714751664200188999888877642001123553212343156521433211-----111123337999886543
Q gi|254780916|r 232 -ANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLP-----QVKSHVFRKDLYYRISVF 305 (482)
Q Consensus 232 -a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~-----~~~~g~fr~dLy~rL~~~ 305 (482)
T Consensus 289 ElVpGVLFIDEvHmLDIE~FsFlnrAlEs-e~aP-----------Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllI- 355 (450)
T COG1224 289 ELVPGVLFIDEVHMLDIECFSFLNRALES-ELAP-----------IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLI- 355 (450)
T ss_pred EEECCEEEEECHHHHHHHHHHHHHHHHHC-CCCC-----------EEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEE-
T ss_conf 86134289732134557899999987631-4675-----------7999717750012166776888898766622567-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 344677877442222556677764101122333321111100012233898689
Q gi|254780916|r 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQ 359 (482)
Q Consensus 306 ~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvR 359 (482)
T Consensus 356 ---I~t~py~~~EireIi~i----Ra~ee~---i~l~~~Ale~L~~ig~etSLR 399 (450)
T COG1224 356 ---ISTRPYSREEIREIIRI----RAKEED---IELSDDALEYLTDIGEETSLR 399 (450)
T ss_pred ---EECCCCCHHHHHHHHHH----HHHHHC---CCCCHHHHHHHHHHCHHHHHH
T ss_conf ---74477988999999997----643540---304888999997515034489