HHsearch alignment for GI: 254780916 and conserved domain: COG1373
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=94.21 E-value=0.086 Score=32.28 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=45.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH--HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 48873277743679999998426754332101234655421002--4331125555322111001234466714751664
Q gi|254780916|r 165 PIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIE--KFLFGDVDLQTKNSAQFLGKFIEANGGTIVLEEP 242 (482)
Q Consensus 165 ~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e--~~lFG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei 242 (482)
T Consensus 39 i~~i~GpR~~GKTtllk~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~--------~~---~~~~-~~~yifLDEI 103 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY--------IE---LKER-EKSYIFLDEI 103 (398)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC---EEEEECCCCCCCHHHHHHHHHHH--------HH---HHCC-CCCEEEEEEE
T ss_conf 49998886477899999999747773---59997362000135677899999--------98---5222-5745999833
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 2001889998888776
Q gi|254780916|r 243 DALPLAVQGRIYNFIE 258 (482)
Q Consensus 243 ~~L~~~~Q~~Ll~~l~ 258 (482)
T Consensus 104 q~v~~W-~~~lk~l~d 118 (398)
T COG1373 104 QNVPDW-ERALKYLYD 118 (398)
T ss_pred CCCHHH-HHHHHHHHC
T ss_conf 376108-999999975