HHsearch alignment for GI: 254780916 and conserved domain: COG2197

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].

Probab=99.65  E-value=2.1e-15  Score=128.52  Aligned_cols=117  Identities=20%  Similarity=0.217  Sum_probs=105.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHHCC-CEEEEE-CC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             838998699899999999999889-889998-93--79999860899899997854698889999999985789839999
Q gi|254780916|r   11 KRVLIIDKDDEQIKIIKDHVESYG-YDVFIV-NV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQ   86 (482)
Q Consensus        11 ~rILIVDDd~~~~~~l~~~L~~~G-~~v~~a-~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIii   86 (482)
T Consensus         1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvl   80 (211)
T COG2197           1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVL   80 (211)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             94999809777999999999868996699982788999998513799889983788998759999999986899729999


Q ss_pred             ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26899999998885057432222222222222222222222
Q gi|254780916|r   87 TTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREG  127 (482)
Q Consensus        87 T~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~  127 (482)
T Consensus        81 t~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~  121 (211)
T COG2197          81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG  121 (211)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf             67789899999997799699867999999999999997588