HHsearch alignment for GI: 254780916 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.71 E-value=7.6e-17 Score=138.70 Aligned_cols=122 Identities=14% Similarity=0.229 Sum_probs=110.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 28838998699899999999999889889998937--99998608998999978546988899999999857--898399
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKI--PIVPII 84 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~--p~ipvI 84 (482)
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii 210 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII 210 (435)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 67508997480779999999987536336651598999999746898589995578766789999997244444566389
Q ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9926899999998885057432222222222222222222222222
Q gi|254780916|r 85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP 130 (482)
Q Consensus 85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~ 130 (482)
T Consensus 211 ~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~ 256 (435)
T COG3706 211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE 256 (435)
T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9952663478999997688516734778799999999999854188