HHsearch alignment for GI: 254780916 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.71  E-value=7.6e-17  Score=138.70  Aligned_cols=122  Identities=14%  Similarity=0.229  Sum_probs=110.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf             28838998699899999999999889889998937--99998608998999978546988899999999857--898399
Q gi|254780916|r    9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVS--DLSTISKIQVNVIFLSLINCEDDKENILKNIVDKI--PIVPII   84 (482)
Q Consensus         9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~--al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~--p~ipvI   84 (482)
T Consensus       131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii  210 (435)
T COG3706         131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII  210 (435)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf             67508997480779999999987536336651598999999746898589995578766789999997244444566389


Q ss_pred             EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9926899999998885057432222222222222222222222222
Q gi|254780916|r   85 VQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVVP  130 (482)
Q Consensus        85 iiT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~~  130 (482)
T Consensus       211 ~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~  256 (435)
T COG3706         211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE  256 (435)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9952663478999997688516734778799999999999854188