HHsearch alignment for GI: 254780916 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=98.59 E-value=1e-07 Score=74.16 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=102.2
Q ss_pred CEEEEECC--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88999893--7999986089989999785469888999999998578983999926899999998885057432222222
Q gi|254780916|r 35 YDVFIVNV--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVS 112 (482)
Q Consensus 35 ~~v~~a~~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIiiT~~~~~~~~~~a~~~g~~d~l~KP~~ 112 (482)
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~-~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP-AT-VVMVTALDDSAPRVRGLKAGADDFLTKPVN 90 (435)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCC-CC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 5463425427799997448987487410068867301998763587-51-699860378777556776313441367777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 22222222222222222222221111111122222222222222223443204887327774367999999842
Q gi|254780916|r 113 RKQLCDSIICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 (482)
Q Consensus 113 ~~~L~~~i~~al~~~~~~~~~~~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~ 186 (482)
T Consensus 91 ~~~~~~r~~~l~~~k~~~de~~~~~~~~~~~~~~~~~~~~---------~~~kILvvdD~~~~~~~l~~~L~~~ 155 (435)
T COG3706 91 DSQLFLRAKSLVRLKCSIDELRLREETGGELGVSPLLPED---------APKKILVVDDDATQRERLRRILQVE 155 (435)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 1778875266314444578985145654212356455556---------6750899748077999999998753