HHsearch alignment for GI: 254780916 and conserved domain: COG3707
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms].
Probab=99.15 E-value=2.1e-10 Score=93.13 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEC-C--HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 288389986998999999999998898899989-3--7999986089989999785469888999999998578983999
Q gi|254780916|r 9 RHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVN-V--SDLSTISKIQVNVIFLSLINCEDDKENILKNIVDKIPIVPIIV 85 (482)
Q Consensus 9 ~~~rILIVDDd~~~~~~l~~~L~~~G~~v~~a~-~--~al~~l~~~~~dlillD~~mP~~dGlell~~i~~~~p~ipvIi 85 (482)
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd~~e~~-~~~~~~~~~piv~ 82 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEAL-LLASENVARPIVA 82 (194)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHH-HHHHCCCCCCEEE
T ss_conf 665303424113555678989987597387654134475067785299879996678773289998-9860589987899
Q ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92689999999888505743222222222222222222222222
Q gi|254780916|r 86 QTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICALREGVV 129 (482)
Q Consensus 86 iT~~~~~~~~~~a~~~g~~d~l~KP~~~~~L~~~i~~al~~~~~ 129 (482)
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred EECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 97167858999999738749883476542104799999998899