HHsearch alignment for GI: 254780916 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.16 E-value=7.5e-10 Score=89.26 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC-CCCCHHHHHC
Q ss_conf 11111122222222222222223443204887327774367999999842--67543321012346554-2100243311
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES--GKRAFFPFFIVNCGMID-QDKIEKFLFG 213 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~--s~r~~~~fi~v~c~~~~-~~~~e~~lFG 213 (482)
T Consensus 13 ~~l~di~g~~~~~~~L~~~i~~--~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~~i-- 88 (318)
T PRK00440 13 RSLDEVVGQEEIVERLKSFVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRNKI-- 88 (318)
T ss_pred CCHHHHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHH--
T ss_conf 9899941969999999999987--998669888959988999999999997698643476895164566717899999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 25555322111001234466714751664200188999888877642001123553212343156521433211111123
Q gi|254780916|r 214 DVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHV 293 (482)
Q Consensus 214 ~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~ 293 (482)
T Consensus 89 --~~~~--~~---~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~-~kii~~-- 147 (318)
T PRK00440 89 --KEFA--RT---APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYS-SKIIDP-- 147 (318)
T ss_pred --HHHH--HH---CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCC-CCCCCC--
T ss_conf --9999--72---6778997389998685532255678887643105-----------6662588634883-337615--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 33799988654334467787744222255667776410112233332111110001223389868999999999987438
Q gi|254780916|r 294 FRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLK 373 (482)
Q Consensus 294 fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~ 373 (482)
T Consensus 148 ----i~SR--c~~i~f~~~~~--~~i~----~~L~~I~~~E~---i~~~~~~l~~i~~~s~-gdlR~ain~Lq~~~~--~ 209 (318)
T PRK00440 148 ----IQSR--CAVFRFSPLPK--EAVI----ERLRYIAKNEG---LEITDDALEAIYYVSE-GDMRKAINALQAAAA--T 209 (318)
T ss_pred ----HHHH--HEEEECCCCCH--HHHH----HHHHHHHHHCC---CCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHH--C
T ss_conf ----5655--10111578999--9999----99999999859---9989999999998649-989999999999997--4
Q ss_pred CCCCCHHHHHHHHC
Q ss_conf 98106889545421
Q gi|254780916|r 374 DSHLTEDRFVLLLS 387 (482)
Q Consensus 374 ~~~i~~~~~~~~l~ 387 (482)
T Consensus 210 ~~~it~~~v~~~~~ 223 (318)
T PRK00440 210 GKEVTEEAVYKITG 223 (318)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89878999999976