HHsearch alignment for GI: 254780916 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=96.42  E-value=0.0028  Score=42.78  Aligned_cols=109  Identities=18%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCHHHH---
Q ss_conf             1111112222222222222222344320488732777436799999984--26754332101234655421002433---
Q gi|254780916|r  137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE--SGKRAFFPFFIVNCGMIDQDKIEKFL---  211 (482)
Q Consensus       137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~--~s~r~~~~fi~v~c~~~~~~~~e~~l---  211 (482)
T Consensus        22 k~LddIVgQehIVkRLK~YVk~--~smPHLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~~~~~~~~~~v~~   99 (863)
T PRK04132         22 QRLDEIVGQDHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKE   99 (863)
T ss_pred             CCHHHHCCHHHHHHHHHHHHCC--CCCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             6165522749999999988623--88854430489987714478888887614314555664144212363488887775


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             11255553221110012344667147516642001889998888776
Q gi|254780916|r  212 FGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIE  258 (482)
Q Consensus       212 FG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~  258 (482)
T Consensus       100 ~~~~~p-----------~~~~~~k~~~~de~~~l~~d~~~~~r~~~e  135 (863)
T PRK04132        100 FARTKP-----------IGGASFKIIFLDEADALTQDAQQALRRTME  135 (863)
T ss_pred             CCCCCC-----------CCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             068664-----------578654246443656401011577876677