HHsearch alignment for GI: 254780916 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=96.42 E-value=0.0028 Score=42.78 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCHHHH---
Q ss_conf 1111112222222222222222344320488732777436799999984--26754332101234655421002433---
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHE--SGKRAFFPFFIVNCGMIDQDKIEKFL--- 211 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~--~s~r~~~~fi~v~c~~~~~~~~e~~l--- 211 (482)
T Consensus 22 k~LddIVgQehIVkRLK~YVk~--~smPHLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~~~~~~~~~~v~~ 99 (863)
T PRK04132 22 QRLDEIVGQDHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKE 99 (863)
T ss_pred CCHHHHCCHHHHHHHHHHHHCC--CCCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 6165522749999999988623--88854430489987714478888887614314555664144212363488887775
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 11255553221110012344667147516642001889998888776
Q gi|254780916|r 212 FGDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIE 258 (482)
Q Consensus 212 FG~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~ 258 (482)
T Consensus 100 ~~~~~p-----------~~~~~~k~~~~de~~~l~~d~~~~~r~~~e 135 (863)
T PRK04132 100 FARTKP-----------IGGASFKIIFLDEADALTQDAQQALRRTME 135 (863)
T ss_pred CCCCCC-----------CCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 068664-----------578654246443656401011577876677