HHsearch alignment for GI: 254780916 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=98.84 E-value=2e-08 Score=79.16 Aligned_cols=203 Identities=19% Similarity=0.247 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCHHHHH
Q ss_conf 11111122222222222222223443---20488732777436799999984267543321012346554-210024331
Q gi|254780916|r 137 CALDSLIAVSPAMIQVVDLARKAGDC---AIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMID-QDKIEKFLF 212 (482)
Q Consensus 137 ~~~~~LiG~S~~m~~v~~~i~~~a~~---~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~-~~~~e~~lF 212 (482)
T Consensus 11 k~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNASD~R~~~~I~~~-i 86 (403)
T PRK04195 11 KSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTKDVIERV-A 86 (403)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCCCCCHHHHHHH-H
T ss_conf 989998588999999999999987399657469988939987999999999984---998599771011478999999-9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 12555532211100123446671475166420018899----98888776420011235532123431565214332111
Q gi|254780916|r 213 GDVDLQTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQ----GRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQ 288 (482)
Q Consensus 213 G~~~~~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q----~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~ 288 (482)
T Consensus 87 ~~--~~~-----~~sl~-~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd~~~~~ 145 (403)
T PRK04195 87 GE--AST-----SGSLF-GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTANDPYDPS 145 (403)
T ss_pred HH--HHH-----CCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECCCCCCC
T ss_conf 98--760-----68877-8873499963434457244479999999998548-------------870899826845567
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11123337999886543344677877442222556677764101122333321111100012233898689999999999
Q gi|254780916|r 289 VKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRA 368 (482)
Q Consensus 289 ~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~ 368 (482)
T Consensus 146 ~~--~lrs------~c~~i~F~~~~~~--~----I~~~L~~I~~~Egi---~i~~~aL~~Ia~~s-~GDlR~aIN~LQ~~ 207 (403)
T PRK04195 146 LR--PLRN------ACLMIEFKRLSKR--S----IVPVLKRICRKEGI---ECEEEALREIAERS-GGDLRSAINDLQAI 207 (403)
T ss_pred HH--HHHH------HHHHCCCCCCCHH--H----HHHHHHHHHHHCCC---CCCHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 17--7997------6612217994999--9----99999999997699---99999999999987-97399999999999
Q ss_pred HHHCCCCCCCHHHHHH
Q ss_conf 8743898106889545
Q gi|254780916|r 369 VIGLKDSHLTEDRFVL 384 (482)
Q Consensus 369 ~i~~~~~~i~~~~~~~ 384 (482)
T Consensus 208 ~--~~~~~~~~~~~~~ 221 (403)
T PRK04195 208 A--EGGGRITLDDVKT 221 (403)
T ss_pred H--CCCCCCCHHHHHH
T ss_conf 7--4899775666664