HHsearch alignment for GI: 254780916 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=100.00 E-value=0 Score=704.82 Aligned_cols=319 Identities=28% Similarity=0.452 Sum_probs=280.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-C
Q ss_conf 111122222222222222223443204887327774367999999842675433210123465542100243311255-5
Q gi|254780916|r 139 LDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVD-L 217 (482)
Q Consensus 139 ~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~r~~~~fi~v~c~~~~~~~~e~~lFG~~~-~ 217 (482)
T Consensus 185 ~~elIG~S~~m~~l~~~i~~vA~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~kGa 264 (510)
T PRK05022 185 QGEMIGQSPAMQQLKKEIEVVAASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHVKGA 264 (510)
T ss_pred CCCEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 89752089999999999999968999889889898139999999996688789985788899998567899865977788
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 53221110012344667147516642001889998888776420011235532123431565214332111111233379
Q gi|254780916|r 218 QTKNSAQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKD 297 (482)
Q Consensus 218 ~~~~~~~~~g~~~~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~t~~~L~~~~~~g~fr~d 297 (482)
T Consensus 265 FtGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~D 344 (510)
T PRK05022 265 FTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRAD 344 (510)
T ss_pred CCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHH
T ss_conf 68865567881017789879875745499999999999984795885589946666689996078359999883963899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-
Q ss_conf 9988654334467787744222255667776410112233332111110001223389868999999999987438981-
Q gi|254780916|r 298 LYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQELKNILLRAVIGLKDSH- 376 (482)
Q Consensus 298 Ly~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvREL~n~i~r~~i~~~~~~- 376 (482)
T Consensus 345 LYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvIeRA~lla~~~~~ 424 (510)
T PRK05022 345 LYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVISRAALLARARRA 424 (510)
T ss_pred HHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99876204034808655554099999999999999829898988899999997099997899999999999997156667
Q ss_pred -----CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -----068895454212445432234322222233444321000000001123444543258999999999999999828
Q gi|254780916|r 377 -----LTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYR 451 (482)
Q Consensus 377 -----i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~E~~~I~~aL~~~~ 451 (482)
T Consensus 425 ~~~~~i~~~~l~~~~~~~~~~-------------~~-~~~--------~~~~~~~~~~~Lr~a~e~~Er~lI~~AL~~~~ 482 (510)
T PRK05022 425 GDIVTLEAQHLDLPEASAASV-------------PL-PPP--------EAAAAPVASQNLREATEAFQRQLIRQALAQHN 482 (510)
T ss_pred CCCCCCCHHHCCCCCCCCCCC-------------CC-CCC--------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 764425676648754455555-------------67-775--------54456767899999999999999999999919
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 7278999784899889999999818881
Q gi|254780916|r 452 AQMSEVARRLGIGRSTLYRKIREYNIEV 479 (482)
Q Consensus 452 Gn~~~aA~~LGIsR~tL~rKlk~~gi~~ 479 (482)
T Consensus 483 GN~s~AAr~LGIsRstLyRk~KrLGIk~ 510 (510)
T PRK05022 483 GNWAAAARALELDRANLHRLAKRLGLKD 510 (510)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 9899999997989999999999808999