HHsearch alignment for GI: 254780916 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.59 E-value=3e-07 Score=70.88 Aligned_cols=217 Identities=14% Similarity=0.158 Sum_probs=123.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----CCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 111111112222222222222222344320488732777436799999984267----54332101-2346554210024
Q gi|254780916|r 135 EHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK----RAFFPFFI-VNCGMIDQDKIEK 209 (482)
Q Consensus 135 ~~~~~~~LiG~S~~m~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~iH~~s~----r~~~~fi~-v~c~~~~~~~~e~ 209 (482)
T Consensus 11 RP~~f~dvvgQ~~v~~~L~n~i~~-~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~D 89 (541)
T PRK05563 11 RPRTFEDVVGQEHITTTLKNQIIN-NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMD 89 (541)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 899776624849999999999984-9932045303879958999999999995799988898575148899985689887
Q ss_pred HHHCCCCCCC--CCCCCCCCCCC-------CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 3311255553--22111001234-------46671475166420018899988887764200112355321234315652
Q gi|254780916|r 210 FLFGDVDLQT--KNSAQFLGKFI-------EANGGTIVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFL 280 (482)
Q Consensus 210 ~lFG~~~~~~--~~~~~~~g~~~-------~a~~Gtl~l~ei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiIa~ 280 (482)
T Consensus 90 v~--Eidaas~~gvd~iR-~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEeP-----------p~~~~Fila 155 (541)
T PRK05563 90 VI--EIDAASNNGVDDIR-EIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEP-----------PSNVIFILA 155 (541)
T ss_pred EE--EECCCCCCCHHHHH-HHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEE
T ss_conf 36--62444447889999-99976104876787059999772338999999999998548-----------777569997
Q ss_pred CCCCCC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 143321---1-111123337999886543344677877442222556677764101122333321111100012233898
Q gi|254780916|r 281 TEKNLL---P-QVKSHVFRKDLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356 (482)
Q Consensus 281 t~~~L~---~-~~~~g~fr~dLy~rL~~~~i~iPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ls~~a~~~L~~y~WPG 356 (482)
T Consensus 156 tte~~ki~~tI~SRcq~f~--------f~~i~~----------~~i~~~-L~~I~~~E~i---~~~~~al~lIa~~s-~G 212 (541)
T PRK05563 156 TTDPQKLPITILSRCQRFD--------FKRIKV----------KDIFKR-LRKIVEEQGI---FADDKSLNLIARMS-DG 212 (541)
T ss_pred CCCCCCCCHHHHHHEEEEE--------EEECCH----------HHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHC-CC
T ss_conf 6984427455674213577--------543899----------999999-9999998499---98789999999745-99
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 6899999999998743898106889545421244
Q gi|254780916|r 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREG 390 (482)
Q Consensus 357 NvREL~n~i~r~~i~~~~~~i~~~~~~~~l~~~~ 390 (482)
T Consensus 213 smRDAlslLdQ~is~~-~~~it~~~v~~~lG~~~ 245 (541)
T PRK05563 213 AMRDALSILDQAISMG-DGKVDYDDVVSMLGLVT 245 (541)
T ss_pred CHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCC
T ss_conf 7788999999999835-99866999999968999